mm9_v1_chr10_+_126500607_126500768	68.0088	bHLH_family.p2	BC046336|Cdk4|12567|cyclin-dependent kinase 4	NM_009870|Cdk4|12567|cyclin-dependent kinase 4	AK153465|Cdk4|12567|cyclin-dependent kinase 4	BC052694|Cdk4|12567|cyclin-dependent kinase 4	BC031599|Cdk4|12567|cyclin-dependent kinase 4	AK011871|Cdk4|12567|cyclin-dependent kinase 4	AK003804|Cdk4|12567|cyclin-dependent kinase 4	AK006918|Cdk4|12567|cyclin-dependent kinase 4	AK012064|Cdk4|12567|cyclin-dependent kinase 4	AK146107|Cdk4|12567|cyclin-dependent kinase 4	AK019380|Cdk4|12567|cyclin-dependent kinase 4	AK078440|Cdk4|12567|cyclin-dependent kinase 4	AK013400|Cdk4|12567|cyclin-dependent kinase 4	AK185090|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chr4_+_147965596_147965685	28.0234	bHLH_family.p2	AK028359|Srm|20810|spermidine synthase	NM_009272|Srm|20810|spermidine synthase	AK051101|Srm|20810|spermidine synthase	BC005566|Srm|20810|spermidine synthase	L19311|Srm|20810|spermidine synthase	AK146395|Srm|20810|spermidine synthase
mm9_v1_chr17_+_45701100_45701100	24.0883	bHLH_family.p2	AK167343|Slc35b2|73836|solute carrier family 35, member B2	NM_028662|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr11_+_117670970_117671053	23.861	bHLH_family.p2	NM_009304|Syngr2|20973|synaptogyrin 2	AK150234|Syngr2|20973|synaptogyrin 2	AK170681|Syngr2|20973|synaptogyrin 2	AF151985|Syngr2|20973|synaptogyrin 2	BC004829|Syngr2|20973|synaptogyrin 2	AF364049|Syngr2|20973|synaptogyrin 2	AK157343|Syngr2|20973|synaptogyrin 2	AJ002307|Syngr2|20973|synaptogyrin 2
mm9_v1_chr2_-_28771940_28771959	22.6999	bHLH_family.p2	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr19_+_7049425_7049555	22.2886	bHLH_family.p2	AK141152|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	X97490|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	BC082545|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	NM_008889|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm9_v1_chr11_-_60624592_60624671	22.0262	bHLH_family.p2	AF237702|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	X94478|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	X94479|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	BC026055|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	AK132342|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	AK010439|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)
mm9_v1_chr11_-_60624733_60624766	21.7429	bHLH_family.p2	NM_009171|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)
mm9_v1_chr11_-_99527240_99527273	21.4985	bHLH_family.p2	BC120646|Krtap4-6|68768|keratin associated protein 4-6	BC120648|Krtap4-6|68768|keratin associated protein 4-6	AK004258|Krtap4-6|68768|keratin associated protein 4-6	NM_026834|Krtap4-6|68768|keratin associated protein 4-6
mm9_v1_chr3_+_41368801_41368825	19.4905	bHLH_family.p2	NM_001130186|Phf17|269424|PHD finger protein 17
mm9_v1_chr15_+_59205752_59205871	19.2907	bHLH_family.p2	NM_001164604|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	NM_026746|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK003685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK051277|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	BC009125|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK188685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK211545|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK212165|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)
mm9_v1_chr17_-_45732442_45732540	19.0756	bHLH_family.p2	AK218485|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK180131|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK180168|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK183203|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK191284|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK197634|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK200370|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK205425|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK205461|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK206588|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK149483|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK170463|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK004756|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr19_-_60656627_60656934	18.9291	bHLH_family.p2	AK036606|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK169791|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK019216|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	BC026363|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK147382|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172096|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172097|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_030197|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene
mm9_v1_chr17_+_45700882_45700945	18.8712	bHLH_family.p2	AK155551|Slc35b2|73836|solute carrier family 35, member B2	AK144403|Slc35b2|73836|solute carrier family 35, member B2	AK003377|Slc35b2|73836|solute carrier family 35, member B2	AK090329|Slc35b2|73836|solute carrier family 35, member B2	AK152362|Slc35b2|73836|solute carrier family 35, member B2	BC025875|Slc35b2|73836|solute carrier family 35, member B2	BC036992|Slc35b2|73836|solute carrier family 35, member B2	AF414190|Slc35b2|73836|solute carrier family 35, member B2	AK154868|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chrX_-_131076136_131076235	18.6117	bHLH_family.p2	BC004796|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AF150081|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK088903|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK165573|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AB031055|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	BC094631|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	NM_013898|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK011402|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK090079|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)
mm9_v1_chr9_+_21172314_21172446	18.4898	bHLH_family.p2	AK150276|Ilf3|16201|interleukin enhancer binding factor 3	AK128936|Ilf3|16201|interleukin enhancer binding factor 3	AK048096|Ilf3|16201|interleukin enhancer binding factor 3	AK077560|Ilf3|16201|interleukin enhancer binding factor 3	BC047272|Ilf3|16201|interleukin enhancer binding factor 3	AF497751|Ilf3|16201|interleukin enhancer binding factor 3	AF497752|Ilf3|16201|interleukin enhancer binding factor 3	DQ104405|Ilf3|16201|interleukin enhancer binding factor 3	DQ104406|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042707|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042708|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042709|Ilf3|16201|interleukin enhancer binding factor 3	NM_010561|Ilf3|16201|interleukin enhancer binding factor 3
mm9_v1_chr10_+_79317316_79317391	18.298	bHLH_family.p2	AK151292|Ptbp1|19205|polypyrimidine tract binding protein 1	AK153561|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_001077363|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_008956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK163274|Ptbp1|19205|polypyrimidine tract binding protein 1	BC007472|Ptbp1|19205|polypyrimidine tract binding protein 1	AK082600|Ptbp1|19205|polypyrimidine tract binding protein 1	AK150840|Ptbp1|19205|polypyrimidine tract binding protein 1	AK168392|Ptbp1|19205|polypyrimidine tract binding protein 1	AK037607|Ptbp1|19205|polypyrimidine tract binding protein 1	AK172712|Ptbp1|19205|polypyrimidine tract binding protein 1	AK044956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK043824|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr11_+_99725789_99725789	18.27	bHLH_family.p2	AK017437|Gm11559|100415785|predicted gene 11559	NM_001177484|Gm11559|100415785|predicted gene 11559
mm9_v1_chr17_+_29627950_29627989	18.2544	bHLH_family.p2	BC053019|Pim1|18712|proviral integration site 1	BC055316|Pim1|18712|proviral integration site 1	NM_008842|Pim1|18712|proviral integration site 1
mm9_v1_chr19_+_7049639_7049662	17.0429	bHLH_family.p2	BC125654|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	BC125650|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm9_v1_chr17_-_35137799_35137902	16.862	bHLH_family.p2	AK088284|D17H6S56E-5|110956|DNA segment, Chr 17, human D6S56E 5
mm9_v1_chr14_+_51544629_51544699	16.8388	bHLH_family.p2	BC052401|Apex1|11792|apurinic/apyrimidinic endonuclease 1	AK013296|Apex1|11792|apurinic/apyrimidinic endonuclease 1	D90374|Apex1|11792|apurinic/apyrimidinic endonuclease 1	NM_009687|Apex1|11792|apurinic/apyrimidinic endonuclease 1
mm9_v1_chr9_+_107490100_107490219	16.8368	bHLH_family.p2	BC023486|Ifrd2|15983|interferon-related developmental regulator 2	BC037434|Ifrd2|15983|interferon-related developmental regulator 2	AY298860|Ifrd2|15983|interferon-related developmental regulator 2
mm9_v1_chr11_-_99489523_99489552	16.8276	bHLH_family.p2	BC147087|Krtap4-1|665891|keratin associated protein 4-1	BC147088|Krtap4-1|665891|keratin associated protein 4-1	AK137752|Krtap4-1|665891|keratin associated protein 4-1	NM_001048196|Krtap4-1|665891|keratin associated protein 4-1
mm9_v1_chr5_-_138613028_138613124	16.5307	bHLH_family.p2	BC066024|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC023232|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC065164|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150059|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150066|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK154052|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK133091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK149913|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	D26091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	NM_008568|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK144980|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)
mm9_v1_chr17_+_46633703_46633755	16.4872	bHLH_family.p2	BC082791|BC048355|381101|cDNA sequence BC048355	AK146723|BC048355|381101|cDNA sequence BC048355	NM_207161|BC048355|381101|cDNA sequence BC048355	BC048355|BC048355|381101|cDNA sequence BC048355	AK151589|BC048355|381101|cDNA sequence BC048355
mm9_v1_chr10_+_79317396_79317408	16.2648	bHLH_family.p2	BC066210|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr17_+_35137995_35138088	15.9913	bHLH_family.p2	AK157814|Vars|22321|valyl-tRNA synthetase	AK012123|Vars|22321|valyl-tRNA synthetase	AK154823|Vars|22321|valyl-tRNA synthetase	BC053703|Vars|22321|valyl-tRNA synthetase	AF087680|Vars|22321|valyl-tRNA synthetase
mm9_v1_chr9_-_43047862_43047949	15.8632	bHLH_family.p2	BC026022|Oaf|102644|OAF homolog (Drosophila)	BC034836|Oaf|102644|OAF homolog (Drosophila)	AK150279|Oaf|102644|OAF homolog (Drosophila)	BC025514|Oaf|102644|OAF homolog (Drosophila)	AK051349|Oaf|102644|OAF homolog (Drosophila)	NM_178644|Oaf|102644|OAF homolog (Drosophila)
mm9_v1_chr18_+_56867378_56867570	15.6608	bHLH_family.p2	AK079511|Lmnb1|16906|lamin B1	AK132252|Lmnb1|16906|lamin B1	NM_010721|Lmnb1|16906|lamin B1	AK089110|Lmnb1|16906|lamin B1	BC052729|Lmnb1|16906|lamin B1	BC058392|Lmnb1|16906|lamin B1	M35153|Lmnb1|16906|lamin B1	X16705|Lmnb1|16906|lamin B1
mm9_v1_chr2_+_31325763_31325817	15.5307	bHLH_family.p2	BC002074|Ass1|11898|argininosuccinate synthetase 1	NM_007494|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr8_+_87514471_87514552	15.3314	bHLH_family.p2	NM_001167991|Hook2|170833|hook homolog 2 (Drosophila)	NM_133255|Hook2|170833|hook homolog 2 (Drosophila)	AK030599|Hook2|170833|hook homolog 2 (Drosophila)	AK136069|Hook2|170833|hook homolog 2 (Drosophila)	AK042048|Hook2|170833|hook homolog 2 (Drosophila)	AK166954|Hook2|170833|hook homolog 2 (Drosophila)	BC080744|Hook2|170833|hook homolog 2 (Drosophila)	BC019486|Hook2|170833|hook homolog 2 (Drosophila)	AK145768|Hook2|170833|hook homolog 2 (Drosophila)	AK169073|Hook2|170833|hook homolog 2 (Drosophila)	AK161612|Hook2|170833|hook homolog 2 (Drosophila)	BC055881|Hook2|170833|hook homolog 2 (Drosophila)	BC029967|Hook2|170833|hook homolog 2 (Drosophila)
mm9_v1_chr1_-_188573165_188573236	15.3096	bHLH_family.p2	AK007616|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013217|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	BC006787|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK010658|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK087997|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013204|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK169088|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	NM_026041|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)
mm9_v1_chr11_-_76031013_76031165	15.1649	bHLH_family.p2	BC031425|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK028076|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK165864|Gemin4|276919|gem (nuclear organelle) associated protein 4	BC062157|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK141078|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK154061|Gemin4|276919|gem (nuclear organelle) associated protein 4	NM_177367|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK133821|Gemin4|276919|gem (nuclear organelle) associated protein 4
mm9_v1_chr15_-_38230397_38230491	15.103	bHLH_family.p2	BC003316|Klf10|21847|Kruppel-like factor 10	Z36270|Klf10|21847|Kruppel-like factor 10	AK154719|Klf10|21847|Kruppel-like factor 10	AF064088|Klf10|21847|Kruppel-like factor 10	AK043433|Klf10|21847|Kruppel-like factor 10	AK079679|Klf10|21847|Kruppel-like factor 10	AF049879|Klf10|21847|Kruppel-like factor 10	NM_013692|Klf10|21847|Kruppel-like factor 10	AK004906|Klf10|21847|Kruppel-like factor 10
mm9_v1_chr14_-_32643594_32643685	15.0832	bHLH_family.p2	BC051456|Ankrd28|105522|ankyrin repeat domain 28	BC094609|Ankrd28|105522|ankyrin repeat domain 28	NM_001024604|Ankrd28|105522|ankyrin repeat domain 28
mm9_v1_chr7_-_52722144_52722269	15.0483	bHLH_family.p2	AY095934|Bax|12028|BCL2-associated X protein	L22472|Bax|12028|BCL2-associated X protein	AK149994|Bax|12028|BCL2-associated X protein	AK013298|Bax|12028|BCL2-associated X protein	BC053380|Bax|12028|BCL2-associated X protein	BC018228|Bax|12028|BCL2-associated X protein	AK159233|Bax|12028|BCL2-associated X protein	NM_007527|Bax|12028|BCL2-associated X protein
mm9_v1_chr15_-_59205688_59205750	15.0052	bHLH_family.p2	BC067035|E430025E21Rik|223593|RIKEN cDNA E430025E21 gene	NM_153548|E430025E21Rik|223593|RIKEN cDNA E430025E21 gene	AK128970|E430025E21Rik|223593|RIKEN cDNA E430025E21 gene
mm9_v1_chr7_-_29096957_29097119	14.9902	bHLH_family.p2	AK010832|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	BC010303|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AY551342|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK088074|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK012977|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	BC037056|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK008340|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK008382|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	NM_025616|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK167473|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)
mm9_v1_chr9_+_35075447_35075515	14.9818	bHLH_family.p2	AK010322|Rpusd4|71989|RNA pseudouridylate synthase domain containing 4	AK156574|Rpusd4|71989|RNA pseudouridylate synthase domain containing 4	BC061256|Rpusd4|71989|RNA pseudouridylate synthase domain containing 4	NM_028040|Rpusd4|71989|RNA pseudouridylate synthase domain containing 4
mm9_v1_chr11_+_69814046_69814322	14.9094	bHLH_family.p2	AK144001|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC092396|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC021015|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK146822|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	NM_007888|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	U24160|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC053050|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK168376|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK159895|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK050614|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)
mm9_v1_chr16_+_20672847_20672848	14.8718	bHLH_family.p2	AK134557|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr3_+_41368846_41368849	14.694	bHLH_family.p2	AK129445|Phf17|269424|PHD finger protein 17
mm9_v1_chr7_+_54051432_54051635	14.5893	bHLH_family.p2	NM_008186|Gtf2h1|14884|general transcription factor II H, polypeptide 1	AK005065|Gtf2h1|14884|general transcription factor II H, polypeptide 1	AK182163|Gtf2h1|14884|general transcription factor II H, polypeptide 1	AK185521|Gtf2h1|14884|general transcription factor II H, polypeptide 1
mm9_v1_chr5_-_137755406_137755631	14.5003	bHLH_family.p2	AK146823|Trip6|22051|thyroid hormone receptor interactor 6	AK159387|Trip6|22051|thyroid hormone receptor interactor 6	AF116823|Trip6|22051|thyroid hormone receptor interactor 6	AK010435|Trip6|22051|thyroid hormone receptor interactor 6	NM_011639|Trip6|22051|thyroid hormone receptor interactor 6	AK166024|Trip6|22051|thyroid hormone receptor interactor 6
mm9_v1_chr11_+_74462965_74463046	14.4833	bHLH_family.p2	AK145708|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK157310|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154925|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	NM_001081158|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154146|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK036540|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK150045|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	BC072573|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene
mm9_v1_chr5_-_137755361_137755401	14.2592	bHLH_family.p2	AF097511|Trip6|22051|thyroid hormone receptor interactor 6	BC138685|Trip6|22051|thyroid hormone receptor interactor 6	BC138686|Trip6|22051|thyroid hormone receptor interactor 6
mm9_v1_chr13_-_104899571_104899748	14.2336	bHLH_family.p2	AK146364|Nln|75805|neurolysin (metallopeptidase M3 family)	BC016224|Nln|75805|neurolysin (metallopeptidase M3 family)	AK138399|Nln|75805|neurolysin (metallopeptidase M3 family)	AK170508|Nln|75805|neurolysin (metallopeptidase M3 family)	AK171432|Nln|75805|neurolysin (metallopeptidase M3 family)	AK079090|Nln|75805|neurolysin (metallopeptidase M3 family)	NM_029447|Nln|75805|neurolysin (metallopeptidase M3 family)
mm9_v1_chr17_+_35137851_35137869	14.2315	bHLH_family.p2	NM_011690|Vars|22321|valyl-tRNA synthetase
mm9_v1_chr19_+_46130978_46131205	14.2244	bHLH_family.p2	NM_001081214|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK147947|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK044522|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK122322|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	BC066048|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK180476|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm9_v1_chr4_-_41222121_41222174	14.0974	bHLH_family.p2	BC007179|Ubap2|68926|ubiquitin-associated protein 2	NM_026872|Ubap2|68926|ubiquitin-associated protein 2
mm9_v1_chr2_+_31325818_31325829	14.0485	bHLH_family.p2	AK149489|Ass1|11898|argininosuccinate synthetase 1	AK146635|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr9_+_107489981_107490091	13.6752	bHLH_family.p2	AK166130|Ifrd2|15983|interferon-related developmental regulator 2	AK007687|Ifrd2|15983|interferon-related developmental regulator 2	NM_025903|Ifrd2|15983|interferon-related developmental regulator 2	AK156625|Ifrd2|15983|interferon-related developmental regulator 2	AK165967|Ifrd2|15983|interferon-related developmental regulator 2	AK149496|Ifrd2|15983|interferon-related developmental regulator 2	AK166258|Ifrd2|15983|interferon-related developmental regulator 2
mm9_v1_chr2_-_164658954_164659095	13.6299	bHLH_family.p2	AK004524|Neurl2|415115|neuralized-like 2 (Drosophila)	NM_001082974|Neurl2|415115|neuralized-like 2 (Drosophila)
mm9_v1_chr17_-_12962478_12962617	13.6219	bHLH_family.p2	BC150817|Igf2r|16004|insulin-like growth factor 2 receptor	BC171973|Igf2r|16004|insulin-like growth factor 2 receptor	U04710|Igf2r|16004|insulin-like growth factor 2 receptor	NM_010515|Igf2r|16004|insulin-like growth factor 2 receptor
mm9_v1_chr6_-_49164952_49164952	13.5766	bHLH_family.p2	AK147140|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	NM_023670|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3
mm9_v1_chr17_+_29628249_29628310	13.3455	bHLH_family.p2	AK154669|Pim1|18712|proviral integration site 1
mm9_v1_chr4_-_118966829_118966902	13.2872	bHLH_family.p2	AK188049|Ybx1|22608|Y box protein 1	AF038994|Ybx1|22608|Y box protein 1
mm9_v1_chr4_+_122960527_122960606	13.2751	bHLH_family.p2	BC010345|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	NM_148917|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	BC003283|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4
mm9_v1_chr15_-_78603874_78603911	13.2004	bHLH_family.p2	NM_008595|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94349|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC010983|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK143523|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr10_-_62801726_62801784	13.1408	bHLH_family.p2	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr3_+_67386633_67386754	13.0977	bHLH_family.p2	AK075859|Mfsd1|66868|major facilitator superfamily domain containing 1	AK159554|Mfsd1|66868|major facilitator superfamily domain containing 1	AK152444|Mfsd1|66868|major facilitator superfamily domain containing 1	AK135235|Mfsd1|66868|major facilitator superfamily domain containing 1	NM_025813|Mfsd1|66868|major facilitator superfamily domain containing 1	AK004586|Mfsd1|66868|major facilitator superfamily domain containing 1	AK136108|Mfsd1|66868|major facilitator superfamily domain containing 1	AK166645|Mfsd1|66868|major facilitator superfamily domain containing 1	BC024891|Mfsd1|66868|major facilitator superfamily domain containing 1	AK032688|Mfsd1|66868|major facilitator superfamily domain containing 1
mm9_v1_chr8_+_77617514_77617529	13.065	bHLH_family.p2	AK159870|Hmox1|15368|heme oxygenase (decycling) 1	AK159959|Hmox1|15368|heme oxygenase (decycling) 1	NM_010442|Hmox1|15368|heme oxygenase (decycling) 1	AK154598|Hmox1|15368|heme oxygenase (decycling) 1	AK150934|Hmox1|15368|heme oxygenase (decycling) 1	AK153420|Hmox1|15368|heme oxygenase (decycling) 1	AK153516|Hmox1|15368|heme oxygenase (decycling) 1	AK159521|Hmox1|15368|heme oxygenase (decycling) 1	AK151005|Hmox1|15368|heme oxygenase (decycling) 1	AK153566|Hmox1|15368|heme oxygenase (decycling) 1	AK169227|Hmox1|15368|heme oxygenase (decycling) 1	AK151012|Hmox1|15368|heme oxygenase (decycling) 1
mm9_v1_chr19_-_24355054_24355107	12.9358	bHLH_family.p2	BC058533|Fxn|14297|frataxin	BC125337|Fxn|14297|frataxin	BC132337|Fxn|14297|frataxin	NM_008044|Fxn|14297|frataxin	U95736|Fxn|14297|frataxin	AK160458|Fxn|14297|frataxin	AK148147|Fxn|14297|frataxin
mm9_v1_chr1_+_71603729_71603816	12.8566	bHLH_family.p2	NM_026195|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	BC039925|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK010611|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK046353|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK028930|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK088701|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK010449|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK157739|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK012074|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	AK139235|Atic|108147|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
mm9_v1_chr15_+_34012415_34012599	12.6712	bHLH_family.p2	AK087486|Mtdh|67154|metadherin	AK156119|Mtdh|67154|metadherin	AK029915|Mtdh|67154|metadherin	NM_026002|Mtdh|67154|metadherin	AK011808|Mtdh|67154|metadherin	AK151810|Mtdh|67154|metadherin	AK171976|Mtdh|67154|metadherin	AK151269|Mtdh|67154|metadherin	AF501309|Mtdh|67154|metadherin	AK009253|Mtdh|67154|metadherin	BC023115|Mtdh|67154|metadherin
mm9_v1_chr2_-_104582953_104582979	12.4685	bHLH_family.p2	BC013499|Depdc7|211896|DEP domain containing 7	NM_144804|Depdc7|211896|DEP domain containing 7	AK144066|Depdc7|211896|DEP domain containing 7	AK165504|Depdc7|211896|DEP domain containing 7	AK134830|Depdc7|211896|DEP domain containing 7	AK162086|Depdc7|211896|DEP domain containing 7	AK162218|Depdc7|211896|DEP domain containing 7
mm9_v1_chr1_-_155179844_155179930	12.2941	bHLH_family.p2	J02930|Lamc1|226519|laminin, gamma 1	AK144233|Lamc1|226519|laminin, gamma 1	J03484|Lamc1|226519|laminin, gamma 1	NM_010683|Lamc1|226519|laminin, gamma 1
mm9_v1_chr17_-_25097542_25097636	12.1808	bHLH_family.p2	AK167223|Hn1l|52009|hematological and neurological expressed 1-like	BC057024|Hn1l|52009|hematological and neurological expressed 1-like	NM_198937|Hn1l|52009|hematological and neurological expressed 1-like	AK150226|Hn1l|52009|hematological and neurological expressed 1-like	AK152573|Hn1l|52009|hematological and neurological expressed 1-like	AK166213|Hn1l|52009|hematological and neurological expressed 1-like	AK152133|Hn1l|52009|hematological and neurological expressed 1-like	BC080740|Hn1l|52009|hematological and neurological expressed 1-like	AK169647|Hn1l|52009|hematological and neurological expressed 1-like
mm9_v1_chr8_+_77617542_77617574	12.1786	bHLH_family.p2	AK151627|Hmox1|15368|heme oxygenase (decycling) 1	BC010757|Hmox1|15368|heme oxygenase (decycling) 1	M33203|Hmox1|15368|heme oxygenase (decycling) 1	X13356|Hmox1|15368|heme oxygenase (decycling) 1
mm9_v1_chr9_-_107192018_107192146	12.1285	bHLH_family.p2	AK051962|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK078977|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK172578|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK172344|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK151881|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK144637|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chr12_+_17551678_17551699	12.1116	bHLH_family.p2	NM_013614|Odc1|18263|ornithine decarboxylase, structural 1
mm9_v1_chr4_-_133574655_133574730	12.0604	bHLH_family.p2	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr8_-_72498125_72498184	12.0065	bHLH_family.p2	BC038221|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr3_+_87710282_87710350	11.9745	bHLH_family.p2	AK017863|Hdgf|15191|hepatoma-derived growth factor	BC021654|Hdgf|15191|hepatoma-derived growth factor	BC005713|Hdgf|15191|hepatoma-derived growth factor	AF251787|Hdgf|15191|hepatoma-derived growth factor
mm9_v1_chr9_+_21216277_21216346	11.9166	bHLH_family.p2	NM_021888|Qtrt1|60507|queuine tRNA-ribosyltransferase 1	BC044811|Qtrt1|60507|queuine tRNA-ribosyltransferase 1	AK011586|Qtrt1|60507|queuine tRNA-ribosyltransferase 1	AB034632|Qtrt1|60507|queuine tRNA-ribosyltransferase 1
mm9_v1_chr10_+_122116022_122116053	11.8327	bHLH_family.p2	
mm9_v1_chr7_-_52241669_52241769	11.8055	bHLH_family.p2	BC051547|Prmt1|15469|protein arginine N-methyltransferase 1	BC002249|Prmt1|15469|protein arginine N-methyltransferase 1	AK182363|Prmt1|15469|protein arginine N-methyltransferase 1	AF232716|Prmt1|15469|protein arginine N-methyltransferase 1	AF232717|Prmt1|15469|protein arginine N-methyltransferase 1	AK088790|Prmt1|15469|protein arginine N-methyltransferase 1	NM_019830|Prmt1|15469|protein arginine N-methyltransferase 1	AK020120|Prmt1|15469|protein arginine N-methyltransferase 1	AK146927|Prmt1|15469|protein arginine N-methyltransferase 1	AK164421|Prmt1|15469|protein arginine N-methyltransferase 1	AK146975|Prmt1|15469|protein arginine N-methyltransferase 1	BC051953|Prmt1|15469|protein arginine N-methyltransferase 1	BC062964|Prmt1|15469|protein arginine N-methyltransferase 1	AK152342|Prmt1|15469|protein arginine N-methyltransferase 1
mm9_v1_chr11_+_120494714_120494741	11.6563	bHLH_family.p2	
mm9_v1_chr7_-_152125823_152125829	11.6351	bHLH_family.p2	EU600170|Ccnd1|12443|cyclin D1	NM_007631|Ccnd1|12443|cyclin D1
mm9_v1_chr16_-_5204078_5204121	11.6128	bHLH_family.p2	AK155450|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK159629|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK169539|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK170219|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK162633|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	BC039790|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK168830|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK138035|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK032158|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK087468|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	NM_013796|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
mm9_v1_chr16_-_5204069_5204073	11.608	bHLH_family.p2	BC019640|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
mm9_v1_chr17_+_35031503_35031575	11.5503	bHLH_family.p2	BC062159|Zbtb12|193736|zinc finger and BTB domain containing 12	NM_198886|Zbtb12|193736|zinc finger and BTB domain containing 12	BC020447|Zbtb12|193736|zinc finger and BTB domain containing 12
mm9_v1_chr17_-_53828596_53828657	11.5355	bHLH_family.p2	AK014357|Sgol1|72415|shugoshin-like 1 (S. pombe)	NM_028232|Sgol1|72415|shugoshin-like 1 (S. pombe)	AK154188|Sgol1|72415|shugoshin-like 1 (S. pombe)
mm9_v1_chr4_+_109349189_109349242	11.5304	bHLH_family.p2	BC065098|Faf1|14084|Fas-associated factor 1	NM_007983|Faf1|14084|Fas-associated factor 1
mm9_v1_chr4_-_86315874_86315968	11.4819	bHLH_family.p2	BC054766|Plin2|11520|perilipin 2	AK152896|Plin2|11520|perilipin 2	BC047124|Plin2|11520|perilipin 2	AK152263|Plin2|11520|perilipin 2	AK090277|Plin2|11520|perilipin 2	AK002911|Plin2|11520|perilipin 2	AK150177|Plin2|11520|perilipin 2	AK152081|Plin2|11520|perilipin 2	AK152877|Plin2|11520|perilipin 2	AK154582|Plin2|11520|perilipin 2	M93275|Plin2|11520|perilipin 2	AK167140|Plin2|11520|perilipin 2	AK153222|Plin2|11520|perilipin 2	AK152982|Plin2|11520|perilipin 2	NM_007408|Plin2|11520|perilipin 2
mm9_v1_chr3_-_89856250_89856452	11.467	bHLH_family.p2	AK030218|Ubap2l|74383|ubiquitin associated protein 2-like	AK031934|Ubap2l|74383|ubiquitin associated protein 2-like	BC023906|Ubap2l|74383|ubiquitin associated protein 2-like	BC029075|Ubap2l|74383|ubiquitin associated protein 2-like	AK088702|Ubap2l|74383|ubiquitin associated protein 2-like	AF276967|Ubap2l|74383|ubiquitin associated protein 2-like	AK048286|Ubap2l|74383|ubiquitin associated protein 2-like	AK079895|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165983|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165985|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165987|Ubap2l|74383|ubiquitin associated protein 2-like	NM_028475|Ubap2l|74383|ubiquitin associated protein 2-like	NM_153489|Ubap2l|74383|ubiquitin associated protein 2-like	AK014274|Ubap2l|74383|ubiquitin associated protein 2-like	AK152135|Ubap2l|74383|ubiquitin associated protein 2-like	AK040551|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165984|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165986|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165988|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr19_-_45824047_45824092	11.4488	bHLH_family.p2	AK011749|Npm3|18150|nucleoplasmin 3	NM_008723|Npm3|18150|nucleoplasmin 3	U64450|Npm3|18150|nucleoplasmin 3	AK146603|Npm3|18150|nucleoplasmin 3	AK171848|Npm3|18150|nucleoplasmin 3	AK157198|Npm3|18150|nucleoplasmin 3	BC048491|Npm3|18150|nucleoplasmin 3
mm9_v1_chr1_+_174430359_174430439	11.4153	bHLH_family.p2	AK151576|Tagln2|21346|transgelin 2	NM_178598|Tagln2|21346|transgelin 2	AK167395|Tagln2|21346|transgelin 2	BC009076|Tagln2|21346|transgelin 2	AK167922|Tagln2|21346|transgelin 2	AF149291|Tagln2|21346|transgelin 2	AK171088|Tagln2|21346|transgelin 2	AK172892|Tagln2|21346|transgelin 2	AF465519|Tagln2|21346|transgelin 2
mm9_v1_chr5_-_77380593_77380602	11.3776	bHLH_family.p2	AK159141|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK159859|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	NM_172146|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr16_+_20672854_20672888	11.349	bHLH_family.p2	AK053144|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK142399|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK133903|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK139371|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK162698|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066038|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr6_-_49164469_49164732	11.1988	bHLH_family.p2	AB046173|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	BC045138|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	BC049082|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK011797|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK088465|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK011689|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3
mm9_v1_chr4_+_109349259_109349419	11.0811	bHLH_family.p2	AK053752|Faf1|14084|Fas-associated factor 1	U39643|Faf1|14084|Fas-associated factor 1
mm9_v1_chr12_+_17551771_17551797	11.0713	bHLH_family.p2	AK166093|Odc1|18263|ornithine decarboxylase, structural 1	AK077679|Odc1|18263|ornithine decarboxylase, structural 1	AK139610|Odc1|18263|ornithine decarboxylase, structural 1	AK150283|Odc1|18263|ornithine decarboxylase, structural 1	AK150343|Odc1|18263|ornithine decarboxylase, structural 1	AK152525|Odc1|18263|ornithine decarboxylase, structural 1	AK168219|Odc1|18263|ornithine decarboxylase, structural 1	AK169214|Odc1|18263|ornithine decarboxylase, structural 1	AK172568|Odc1|18263|ornithine decarboxylase, structural 1	S64539|Odc1|18263|ornithine decarboxylase, structural 1	BC083122|Odc1|18263|ornithine decarboxylase, structural 1	BC033264|Odc1|18263|ornithine decarboxylase, structural 1	BC059826|Odc1|18263|ornithine decarboxylase, structural 1
mm9_v1_chr3_+_88336316_88336316	11.0697	bHLH_family.p2	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr19_-_4201541_4201648	11.0439	bHLH_family.p2	BC082556|Rad9|19367|RAD9 homolog (S. pombe)	AF045663|Rad9|19367|RAD9 homolog (S. pombe)	NM_011237|Rad9|19367|RAD9 homolog (S. pombe)	AK138973|Rad9|19367|RAD9 homolog (S. pombe)	AK134293|Rad9|19367|RAD9 homolog (S. pombe)	AK165833|Rad9|19367|RAD9 homolog (S. pombe)
mm9_v1_chr2_-_154394864_154394959	10.9306	bHLH_family.p2	AK220226|E2f1|13555|E2F transcription factor 1
mm9_v1_chr11_+_72254841_72254975	10.8844	bHLH_family.p2	AK143487|Mybbp1a|18432|MYB binding protein (P160) 1a	AK083908|Mybbp1a|18432|MYB binding protein (P160) 1a	AK166533|Mybbp1a|18432|MYB binding protein (P160) 1a	AK154016|Mybbp1a|18432|MYB binding protein (P160) 1a	AK143469|Mybbp1a|18432|MYB binding protein (P160) 1a	AK155074|Mybbp1a|18432|MYB binding protein (P160) 1a	BC052889|Mybbp1a|18432|MYB binding protein (P160) 1a	U63648|Mybbp1a|18432|MYB binding protein (P160) 1a	BC060167|Mybbp1a|18432|MYB binding protein (P160) 1a	BC048858|Mybbp1a|18432|MYB binding protein (P160) 1a	NM_016776|Mybbp1a|18432|MYB binding protein (P160) 1a	BC015070|Mybbp1a|18432|MYB binding protein (P160) 1a	AK208884|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr5_+_45884612_45884734	10.7863	bHLH_family.p2	BC016536|Lap3|66988|leucine aminopeptidase 3	NM_024434|Lap3|66988|leucine aminopeptidase 3	AK089023|Lap3|66988|leucine aminopeptidase 3	AF334160|Lap3|66988|leucine aminopeptidase 3	AK010502|Lap3|66988|leucine aminopeptidase 3	AK002819|Lap3|66988|leucine aminopeptidase 3	CT010237|Lap3|66988|leucine aminopeptidase 3	CT010301|Lap3|66988|leucine aminopeptidase 3	AK005334|Lap3|66988|leucine aminopeptidase 3	AK010384|Lap3|66988|leucine aminopeptidase 3	AK011604|Lap3|66988|leucine aminopeptidase 3	AK169032|Lap3|66988|leucine aminopeptidase 3	AK008600|Lap3|66988|leucine aminopeptidase 3	AK166958|Lap3|66988|leucine aminopeptidase 3
mm9_v1_chr1_+_59741800_59741942	10.7012	bHLH_family.p2	BC076604|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AK134286|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	NM_018868|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AK133959|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AK044216|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	BC085135|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AF053232|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)
mm9_v1_chr7_-_152125661_152125812	10.6418	bHLH_family.p2	AK170833|Ccnd1|12443|cyclin D1	BC060172|Ccnd1|12443|cyclin D1	BC044841|Ccnd1|12443|cyclin D1	AK149905|Ccnd1|12443|cyclin D1	S78355|Ccnd1|12443|cyclin D1	AK053348|Ccnd1|12443|cyclin D1	AK164997|Ccnd1|12443|cyclin D1	M64403|Ccnd1|12443|cyclin D1	AK017834|Ccnd1|12443|cyclin D1
mm9_v1_chr17_-_56419388_56419395	10.5456	bHLH_family.p2	AK003971|Plin3|66905|perilipin 3
mm9_v1_chr7_+_26444141_26444250	10.4811	bHLH_family.p2	NM_138586|Exosc5|27998|exosome component 5	AK007372|Exosc5|27998|exosome component 5	AK137780|Exosc5|27998|exosome component 5	AK006475|Exosc5|27998|exosome component 5	AK155228|Exosc5|27998|exosome component 5	BC092393|Exosc5|27998|exosome component 5	BC034358|Exosc5|27998|exosome component 5
mm9_v1_chr16_+_20672770_20672837	10.3681	bHLH_family.p2	AK081982|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	NM_001005331|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	NM_145941|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr1_-_55144637_55144685	10.3154	bHLH_family.p2	X55023|Hspd1|15510|heat shock protein 1 (chaperonin)	BC016400|Hspd1|15510|heat shock protein 1 (chaperonin)	AK143882|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chr2_-_72931338_72931457	10.3152	bHLH_family.p2	
mm9_v1_chr15_+_98860321_98860321	10.1226	bHLH_family.p2	BC094022|Tuba1c|22146|tubulin, alpha 1C	NM_009448|Tuba1c|22146|tubulin, alpha 1C
mm9_v1_chr2_-_104656852_104656885	10.0308	bHLH_family.p2	NM_001123327|Qser1|99003|glutamine and serine rich 1
mm9_v1_chr4_-_41688124_41688233	10.0152	bHLH_family.p2	AF226605|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390764|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390765|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390766|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390768|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AF030198|Sigmar1|18391|sigma non-opioid intracellular receptor 1	BC019930|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK159886|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK002718|Sigmar1|18391|sigma non-opioid intracellular receptor 1	BC002000|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AF004927|Sigmar1|18391|sigma non-opioid intracellular receptor 1	NM_011014|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK154300|Sigmar1|18391|sigma non-opioid intracellular receptor 1
mm9_v1_chr1_-_95375363_95375369	9.98459	bHLH_family.p2	BC023806|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr17_+_71965554_71965636	9.92592	bHLH_family.p2	NM_175639|Wdr43|72515|WD repeat domain 43	AK012043|Wdr43|72515|WD repeat domain 43	AK152321|Wdr43|72515|WD repeat domain 43	AK032907|Wdr43|72515|WD repeat domain 43	AK080660|Wdr43|72515|WD repeat domain 43	AK129031|Wdr43|72515|WD repeat domain 43
mm9_v1_chr2_-_103601232_103601426	9.91934	bHLH_family.p2	AK149825|Nat10|98956|N-acetyltransferase 10	AK036294|Nat10|98956|N-acetyltransferase 10	AK048552|Nat10|98956|N-acetyltransferase 10	AK040070|Nat10|98956|N-acetyltransferase 10	AK087445|Nat10|98956|N-acetyltransferase 10	BC034516|Nat10|98956|N-acetyltransferase 10	NM_153126|Nat10|98956|N-acetyltransferase 10	AK142682|Nat10|98956|N-acetyltransferase 10	AK054029|Nat10|98956|N-acetyltransferase 10
mm9_v1_chr3_+_80840575_80840591	9.89006	bHLH_family.p2	AK042767|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr11_+_3190334_3190510	9.86974	bHLH_family.p2	AK166189|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	BC043035|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	AB029397|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	NM_019574|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1
mm9_v1_chr16_-_30388534_30388615	9.67384	bHLH_family.p2	NM_001128094|Atp13a3|224088|ATPase type 13A3	NM_001128096|Atp13a3|224088|ATPase type 13A3
mm9_v1_chr9_-_106340536_106340558	9.51527	bHLH_family.p2	AK002423|Acy1|109652|aminoacylase 1	BC005631|Acy1|109652|aminoacylase 1
mm9_v1_chr11_-_69485842_69485924	9.47144	bHLH_family.p2	NM_001159375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	NM_144958|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr9_-_106340564_106340582	9.39474	bHLH_family.p2	AK003703|Acy1|109652|aminoacylase 1	NM_025371|Acy1|109652|aminoacylase 1
mm9_v1_chr16_-_57606866_57606989	9.39426	bHLH_family.p2	BC038891|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	BC038682|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019808|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK080386|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK003195|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019979|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK012168|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK136657|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	NM_025599|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene
mm9_v1_chr6_-_6167086_6167104	9.38198	bHLH_family.p2	AK029020|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr16_+_32608981_32609106	9.35464	bHLH_family.p2	NM_011638|Tfrc|22042|transferrin receptor	AK048228|Tfrc|22042|transferrin receptor	AK088961|Tfrc|22042|transferrin receptor	BC054522|Tfrc|22042|transferrin receptor
mm9_v1_chr11_-_69485800_69485832	9.33805	bHLH_family.p2	BC099392|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC012282|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC049915|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169030|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166527|Eif4a1|13681|eukaryotic translation initiation factor 4A1	X03039|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK159643|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167205|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168697|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169156|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK011529|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK077429|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135752|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135994|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK144850|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146464|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166439|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167003|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167083|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167988|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168780|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169023|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169057|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169279|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166572|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK088124|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145508|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146424|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK152694|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK162017|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166674|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167196|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167906|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK010644|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr6_-_6167113_6167172	9.29616	bHLH_family.p2	AK151180|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK152237|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AF164632|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK150496|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_001177572|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_015829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr5_+_93522440_93522507	9.29204	bHLH_family.p2	AK166517|Sept11|52398|septin 11	AK171368|Sept11|52398|septin 11	BC064466|Sept11|52398|septin 11	NM_001009818|Sept11|52398|septin 11
mm9_v1_chr11_-_115971327_115971329	9.26405	bHLH_family.p2	BC145059|Trim47|217333|tripartite motif-containing 47	BC132148|Trim47|217333|tripartite motif-containing 47	BC137953|Trim47|217333|tripartite motif-containing 47	NM_172570|Trim47|217333|tripartite motif-containing 47
mm9_v1_chr17_-_33783578_33783579	9.23445	bHLH_family.p2	AK150477|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr7_+_129210847_129210947	9.1444	bHLH_family.p2	AK017851|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr17_-_32525894_32525894	9.08942	bHLH_family.p2	NM_011717|Wiz|22404|widely-interspaced zinc finger motifs
mm9_v1_chr2_-_84510822_84510901	9.05855	bHLH_family.p2	AK167638|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK012609|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK142622|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK171972|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	BC056177|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	NM_001033166|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	NM_001037279|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene
mm9_v1_chr16_+_20672890_20672931	9.04789	bHLH_family.p2	AK150050|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066103|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC079675|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr17_-_45739015_45739052	9.00266	bHLH_family.p2	DQ190000|Gm7325|653016|predicted gene 7325	NM_001177468|Gm7325|653016|predicted gene 7325	NM_001177469|Gm7325|653016|predicted gene 7325
mm9_v1_chr10_+_17443024_17443226	8.98971	bHLH_family.p2	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chr17_-_45738863_45738863	8.96721	bHLH_family.p2	NM_001177470|Gm7325|653016|predicted gene 7325
mm9_v1_chr3_+_137527448_137527565	8.95893	bHLH_family.p2	AK088704|H2afz|51788|H2A histone family, member Z	AK146181|H2afz|51788|H2A histone family, member Z	BC079903|H2afz|51788|H2A histone family, member Z	AK143572|H2afz|51788|H2A histone family, member Z	AK151052|H2afz|51788|H2A histone family, member Z	AK151509|H2afz|51788|H2A histone family, member Z	AK152848|H2afz|51788|H2A histone family, member Z	AK168178|H2afz|51788|H2A histone family, member Z	AK169003|H2afz|51788|H2A histone family, member Z	AY074806|H2afz|51788|H2A histone family, member Z	AK028176|H2afz|51788|H2A histone family, member Z	AK150454|H2afz|51788|H2A histone family, member Z	AK151462|H2afz|51788|H2A histone family, member Z	AK151868|H2afz|51788|H2A histone family, member Z	AK152398|H2afz|51788|H2A histone family, member Z	NM_016750|H2afz|51788|H2A histone family, member Z	U70494|H2afz|51788|H2A histone family, member Z	AK212062|H2afz|51788|H2A histone family, member Z
mm9_v1_chr6_-_6167034_6167063	8.95618	bHLH_family.p2	AK002829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK012670|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr7_-_129164546_129164728	8.95001	bHLH_family.p2	AK187372|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK129280|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	BC062933|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK004632|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK154904|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK143691|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK159953|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK149798|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	NM_028758|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm9_v1_chr18_+_35713033_35713097	8.92089	bHLH_family.p2	AK012754|Matr3|17184|matrin 3	AK041908|Matr3|17184|matrin 3	AK080350|Matr3|17184|matrin 3
mm9_v1_chr7_+_148662315_148662353	8.86468	bHLH_family.p2	BC003482|Tspan4|64540|tetraspanin 4
mm9_v1_chr7_+_148662278_148662304	8.86313	bHLH_family.p2	AK172481|Tspan4|64540|tetraspanin 4
mm9_v1_chr17_-_35137690_35137738	8.83032	bHLH_family.p2	L78788|D17H6S56E-5|110956|DNA segment, Chr 17, human D6S56E 5	AK088743|D17H6S56E-5|110956|DNA segment, Chr 17, human D6S56E 5
mm9_v1_chr8_+_86247034_86247066	8.79898	bHLH_family.p2	
mm9_v1_chr15_-_102087673_102087947	8.77965	bHLH_family.p2	M34476|Rarg|19411|retinoic acid receptor, gamma	X15848|Rarg|19411|retinoic acid receptor, gamma	M32068|Rarg|19411|retinoic acid receptor, gamma	BC012923|Rarg|19411|retinoic acid receptor, gamma	NM_011244|Rarg|19411|retinoic acid receptor, gamma	AK148064|Rarg|19411|retinoic acid receptor, gamma
mm9_v1_chr19_+_6276885_6276962	8.7347	bHLH_family.p2	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chr11_-_95867076_95867257	8.70138	bHLH_family.p2	AF061569|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	AK044850|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	AK013940|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	BC051679|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1	NM_009951|Igf2bp1|140486|insulin-like growth factor 2 mRNA binding protein 1
mm9_v1_chr3_+_80840609_80840648	8.56684	bHLH_family.p2	AK033734|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr9_+_44134859_44135076	8.5603	bHLH_family.p2	BC010474|Dpagt1|13478|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	NM_007875|Dpagt1|13478|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	AK008246|Dpagt1|13478|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	AK008317|Dpagt1|13478|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	AK164129|Dpagt1|13478|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	X65603|Dpagt1|13478|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
mm9_v1_chr8_-_119517339_119517451	8.54916	bHLH_family.p2	AK003788|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	AK019983|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	NM_026572|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	BC014745|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	AK050373|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)
mm9_v1_chr4_-_55545337_55545348	8.54623	bHLH_family.p2	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr11_+_99734702_99734753	8.4971	bHLH_family.p2	NM_015741|Krtap9-1|16705|keratin associated protein 9-1	BC116210|Krtap9-1|16705|keratin associated protein 9-1
mm9_v1_chrX_+_156065141_156065596	8.49547	bHLH_family.p2	AK049182|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK172022|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK080930|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135727|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK038540|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK208632|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr15_+_34012606_34012790	8.45886	bHLH_family.p2	BC138858|Mtdh|67154|metadherin	BC138859|Mtdh|67154|metadherin	BC036994|Mtdh|67154|metadherin	AY553638|Mtdh|67154|metadherin
mm9_v1_chr1_-_13650563_13650617	8.36989	bHLH_family.p2	AK143912|Lactb2|212442|lactamase, beta 2	BC004045|Lactb2|212442|lactamase, beta 2	NM_145381|Lactb2|212442|lactamase, beta 2	AK088932|Lactb2|212442|lactamase, beta 2	AK090091|Lactb2|212442|lactamase, beta 2
mm9_v1_chr8_+_67471046_67471202	8.33793	bHLH_family.p2	AK013998|Tmem192|73067|transmembrane protein 192	NM_001163747|Tmem192|73067|transmembrane protein 192	NM_028427|Tmem192|73067|transmembrane protein 192	AK168146|Tmem192|73067|transmembrane protein 192	AK046181|Tmem192|73067|transmembrane protein 192	AK132619|Tmem192|73067|transmembrane protein 192	BC020157|Tmem192|73067|transmembrane protein 192
mm9_v1_chr15_-_102181072_102181189	8.3345	bHLH_family.p2	AK134406|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK034591|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	BC018191|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK083401|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK166118|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK165243|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK088247|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK083537|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK079849|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	BC025501|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK169523|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK087134|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	NM_153416|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia
mm9_v1_chr4_-_147462051_147462172	8.31034	bHLH_family.p2	AF102548|Agtrap|11610|angiotensin II, type I receptor-associated protein	BC057196|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK007502|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK036598|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK007383|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK152467|Agtrap|11610|angiotensin II, type I receptor-associated protein	NM_009642|Agtrap|11610|angiotensin II, type I receptor-associated protein
mm9_v1_chr8_+_120022149_120022210	8.30316	bHLH_family.p2	AK142173|Plcg2|234779|phospholipase C, gamma 2	AK170430|Plcg2|234779|phospholipase C, gamma 2	BC023877|Plcg2|234779|phospholipase C, gamma 2	NM_172285|Plcg2|234779|phospholipase C, gamma 2	AK151039|Plcg2|234779|phospholipase C, gamma 2
mm9_v1_chr2_+_132672645_132672700	8.297	bHLH_family.p2	AK004215|Crls1|66586|cardiolipin synthase 1
mm9_v1_chr11_+_57822347_57822565	8.2683	bHLH_family.p2	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr16_+_44139908_44140168	8.26593	bHLH_family.p2	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr8_-_126545208_126545336	8.26524	bHLH_family.p2	BC013550|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_133966|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK089463|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK154832|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr3_-_89197124_89197146	8.24238	bHLH_family.p2	BC091651|Zbtb7b|22724|zinc finger and BTB domain containing 7B	NM_009565|Zbtb7b|22724|zinc finger and BTB domain containing 7B
mm9_v1_chr3_+_152059620_152059689	8.24189	bHLH_family.p2	BC060614|Zzz3|108946|zinc finger, ZZ domain containing 3	NM_198416|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr11_-_99520272_99520272	8.23788	bHLH_family.p2	NM_001126320|Gm11563|100040248|predicted gene 11563
mm9_v1_chr7_+_129210948_129210953	8.22735	bHLH_family.p2	AK135258|Ubfd1|28018|ubiquitin family domain containing 1	AK140891|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr5_-_77380189_77380218	8.19215	bHLH_family.p2	BC006053|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK148034|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK164506|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	BC023841|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr19_+_6276685_6276733	8.17793	bHLH_family.p2	AK088980|Ehd1|13660|EH-domain containing 1	AK172669|Ehd1|13660|EH-domain containing 1
mm9_v1_chr7_+_129210954_129210978	8.12874	bHLH_family.p2	AK011862|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr11_-_120685418_120685622	8.12763	bHLH_family.p2	AK171499|Fasn|14104|fatty acid synthase	AK147214|Fasn|14104|fatty acid synthase	AK147694|Fasn|14104|fatty acid synthase
mm9_v1_chr11_+_72263260_72263300	8.12568	bHLH_family.p2	
mm9_v1_chr19_-_42203380_42203559	8.08189	bHLH_family.p2	AK009243|Avpi1|69534|arginine vasopressin-induced 1	NM_027106|Avpi1|69534|arginine vasopressin-induced 1	BC027646|Avpi1|69534|arginine vasopressin-induced 1
mm9_v1_chr10_+_43198945_43198945	8.06852	bHLH_family.p2	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr11_+_69393851_69393992	8.02918	bHLH_family.p2	NM_001127233|Trp53|22059|transformation related protein 53	NM_011640|Trp53|22059|transformation related protein 53	X01237|Trp53|22059|transformation related protein 53	AK086845|Trp53|22059|transformation related protein 53	BC005448|Trp53|22059|transformation related protein 53	AF151353|Trp53|22059|transformation related protein 53	AK083750|Trp53|22059|transformation related protein 53	AK079711|Trp53|22059|transformation related protein 53	AK087834|Trp53|22059|transformation related protein 53	AK138777|Trp53|22059|transformation related protein 53	AK147815|Trp53|22059|transformation related protein 53	M13872|Trp53|22059|transformation related protein 53	AY212017|Trp53|22059|transformation related protein 53	X00741|Trp53|22059|transformation related protein 53	AB021961|Trp53|22059|transformation related protein 53	AB017815|Trp53|22059|transformation related protein 53	AB017816|Trp53|22059|transformation related protein 53	AB020317|Trp53|22059|transformation related protein 53	M13873|Trp53|22059|transformation related protein 53	EU031806|Trp53|22059|transformation related protein 53	M13874|Trp53|22059|transformation related protein 53	AF051368|Trp53|22059|transformation related protein 53
mm9_v1_chr11_-_120685366_120685377	8.01095	bHLH_family.p2	AF127033|Fasn|14104|fatty acid synthase
mm9_v1_chr17_-_24300592_24300754	7.93426	bHLH_family.p2	AK168432|Amdhd2|245847|amidohydrolase domain containing 2	AK078259|Amdhd2|245847|amidohydrolase domain containing 2	AK077584|Amdhd2|245847|amidohydrolase domain containing 2	AK159860|Amdhd2|245847|amidohydrolase domain containing 2	AK090009|Amdhd2|245847|amidohydrolase domain containing 2	AK154209|Amdhd2|245847|amidohydrolase domain containing 2	NM_172935|Amdhd2|245847|amidohydrolase domain containing 2
mm9_v1_chr9_+_83728331_83728347	7.93218	bHLH_family.p2	AX775731|Ttk|22137|Ttk protein kinase	M86377|Ttk|22137|Ttk protein kinase
mm9_v1_chr8_+_87396009_87396156	7.89323	bHLH_family.p2	AK005954|Syce2|71846|synaptonemal complex central element protein 2	NM_001168246|Syce2|71846|synaptonemal complex central element protein 2	NM_027954|Syce2|71846|synaptonemal complex central element protein 2	BC132534|Syce2|71846|synaptonemal complex central element protein 2	BC094628|Syce2|71846|synaptonemal complex central element protein 2	AK167332|Syce2|71846|synaptonemal complex central element protein 2	NM_001168244|Syce2|71846|synaptonemal complex central element protein 2
mm9_v1_chr3_+_40754552_40754775	7.86374	bHLH_family.p2	AK160155|Larp1b|214048|La ribonucleoprotein domain family, member 1B	NM_001040399|Larp1b|214048|La ribonucleoprotein domain family, member 1B	AK076732|Larp1b|214048|La ribonucleoprotein domain family, member 1B	AK163348|Larp1b|214048|La ribonucleoprotein domain family, member 1B
mm9_v1_chr10_-_119913990_119913990	7.85976	bHLH_family.p2	NM_010441|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr9_+_83728295_83728324	7.84335	bHLH_family.p2	NM_001110265|Ttk|22137|Ttk protein kinase	NM_009445|Ttk|22137|Ttk protein kinase	AK164093|Ttk|22137|Ttk protein kinase	AK049200|Ttk|22137|Ttk protein kinase	AK041487|Ttk|22137|Ttk protein kinase	BC058851|Ttk|22137|Ttk protein kinase
mm9_v1_chr7_+_35904310_35904321	7.73747	bHLH_family.p2	NM_007678|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC011118|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC028890|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC051102|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC058161|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr1_-_55144687_55144775	7.69188	bHLH_family.p2	AK088844|Hspd1|15510|heat shock protein 1 (chaperonin)	AK146831|Hspd1|15510|heat shock protein 1 (chaperonin)	NM_010477|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chrX_+_12858142_12858215	7.66906	bHLH_family.p2	AK140990|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	NM_010028|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	Z38117|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	AK163250|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC150862|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC172016|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	L25126|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr4_-_133801438_133801522	7.63513	bHLH_family.p2	AK156931|Zfp593|68040|zinc finger protein 593	BC003465|Zfp593|68040|zinc finger protein 593	AK014081|Zfp593|68040|zinc finger protein 593	AK133585|Zfp593|68040|zinc finger protein 593	AK005247|Zfp593|68040|zinc finger protein 593	NM_024215|Zfp593|68040|zinc finger protein 593
mm9_v1_chr11_-_67735654_67735654	7.59203	bHLH_family.p2	AK042217|Usp43|216835|ubiquitin specific peptidase 43	NM_173754|Usp43|216835|ubiquitin specific peptidase 43
mm9_v1_chr17_+_46909583_46909583	7.56207	bHLH_family.p2	BC038674|2310039H08Rik|67101|RIKEN cDNA 2310039H08 gene	NM_025966|2310039H08Rik|67101|RIKEN cDNA 2310039H08 gene
mm9_v1_chr16_+_35770488_35770517	7.55212	bHLH_family.p2	AK028824|Hspbap1|66667|Hspb associated protein 1	AK138906|Hspbap1|66667|Hspb associated protein 1	AK049404|Hspbap1|66667|Hspb associated protein 1	AK076189|Hspbap1|66667|Hspb associated protein 1	AK017731|Hspbap1|66667|Hspb associated protein 1
mm9_v1_chr1_-_75176965_75176984	7.46936	bHLH_family.p2	AK151165|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm9_v1_chr2_+_132672362_132672442	7.4039	bHLH_family.p2	AK002408|Crls1|66586|cardiolipin synthase 1	AK018180|Crls1|66586|cardiolipin synthase 1	NM_001024385|Crls1|66586|cardiolipin synthase 1	BC048702|Crls1|66586|cardiolipin synthase 1	AK017718|Crls1|66586|cardiolipin synthase 1	BC086619|Crls1|66586|cardiolipin synthase 1
mm9_v1_chr7_+_148656507_148656708	7.40063	bHLH_family.p2	AK178760|Cd151|12476|CD151 antigen	AK187557|Cd151|12476|CD151 antigen	AK179098|Cd151|12476|CD151 antigen	AK183639|Cd151|12476|CD151 antigen	AK206440|Cd151|12476|CD151 antigen	AK209805|Cd151|12476|CD151 antigen	AK212781|Cd151|12476|CD151 antigen	AK214308|Cd151|12476|CD151 antigen	AK214748|Cd151|12476|CD151 antigen	AK218332|Cd151|12476|CD151 antigen	AK207853|Cd151|12476|CD151 antigen
mm9_v1_chr17_-_56256668_56256720	7.36079	bHLH_family.p2	AY919875|Plin5|66968|perilipin 5	NM_001077348|Plin5|66968|perilipin 5
mm9_v1_chr2_+_122060526_122060603	7.32759	bHLH_family.p2	AK152169|Sord|20322|sorbitol dehydrogenase	AK166996|Sord|20322|sorbitol dehydrogenase	AK004692|Sord|20322|sorbitol dehydrogenase	BC024124|Sord|20322|sorbitol dehydrogenase	BC092291|Sord|20322|sorbitol dehydrogenase	AK015059|Sord|20322|sorbitol dehydrogenase	NM_146126|Sord|20322|sorbitol dehydrogenase	AK166988|Sord|20322|sorbitol dehydrogenase	U27014|Sord|20322|sorbitol dehydrogenase	BC039957|Sord|20322|sorbitol dehydrogenase	BC030875|Sord|20322|sorbitol dehydrogenase
mm9_v1_chr13_+_73901101_73901259	7.32584	bHLH_family.p2	AK171498|Slc12a7|20499|solute carrier family 12, member 7	AF087436|Slc12a7|20499|solute carrier family 12, member 7	NM_011390|Slc12a7|20499|solute carrier family 12, member 7	BC059242|Slc12a7|20499|solute carrier family 12, member 7	BC060133|Slc12a7|20499|solute carrier family 12, member 7	AK143535|Slc12a7|20499|solute carrier family 12, member 7	AK149750|Slc12a7|20499|solute carrier family 12, member 7	AK166215|Slc12a7|20499|solute carrier family 12, member 7	AK169950|Slc12a7|20499|solute carrier family 12, member 7	BC051558|Slc12a7|20499|solute carrier family 12, member 7	BC053470|Slc12a7|20499|solute carrier family 12, member 7	BC141107|Slc12a7|20499|solute carrier family 12, member 7	AK083598|Slc12a7|20499|solute carrier family 12, member 7	BC079677|Slc12a7|20499|solute carrier family 12, member 7	AK131129|Slc12a7|20499|solute carrier family 12, member 7
mm9_v1_chr5_-_77380226_77380264	7.26759	bHLH_family.p2	AK160542|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK167057|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK147750|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr17_-_47748155_47748220	7.25353	bHLH_family.p2	BC017530|Bysl|53414|bystin-like	AK032993|Bysl|53414|bystin-like	AK019239|Bysl|53414|bystin-like	AK168301|Bysl|53414|bystin-like
mm9_v1_chr1_+_55145132_55145232	7.18269	bHLH_family.p2	AK088121|Hspe1|15528|heat shock protein 1 (chaperonin 10)	U09659|Hspe1|15528|heat shock protein 1 (chaperonin 10)	BC099385|Hspe1|15528|heat shock protein 1 (chaperonin 10)	AK151935|Hspe1|15528|heat shock protein 1 (chaperonin 10)	AK133876|Hspe1|15528|heat shock protein 1 (chaperonin 10)	BC024385|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr2_-_160191800_160191946	7.17678	bHLH_family.p2	AK131926|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm9_v1_chr2_-_92210955_92211192	7.1639	bHLH_family.p2	HM141800|Gyltl1b|228366|glycosyltransferase-like 1B	AK220181|Gyltl1b|228366|glycosyltransferase-like 1B	BC096655|Gyltl1b|228366|glycosyltransferase-like 1B	BC116715|Gyltl1b|228366|glycosyltransferase-like 1B	AK077630|Gyltl1b|228366|glycosyltransferase-like 1B	BC058199|Gyltl1b|228366|glycosyltransferase-like 1B	AK081797|Gyltl1b|228366|glycosyltransferase-like 1B	AY742914|Gyltl1b|228366|glycosyltransferase-like 1B	AY742915|Gyltl1b|228366|glycosyltransferase-like 1B	NM_001166633|Gyltl1b|228366|glycosyltransferase-like 1B	NM_172670|Gyltl1b|228366|glycosyltransferase-like 1B
mm9_v1_chr18_+_14941735_14941757	7.16106	bHLH_family.p2	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr14_-_99498905_99499000	7.13518	bHLH_family.p2	AK012840|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	BC027357|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	AK038313|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	NM_028315|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)
mm9_v1_chr14_-_31832165_31832254	7.11875	bHLH_family.p2	BC037996|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AY181025|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AY185498|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK087757|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK167183|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	BC018560|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK077523|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)
mm9_v1_chr15_-_10644312_10644406	7.11152	bHLH_family.p2	AK045733|Rai14|75646|retinoic acid induced 14	AK129333|Rai14|75646|retinoic acid induced 14	AK090343|Rai14|75646|retinoic acid induced 14	NM_001166408|Rai14|75646|retinoic acid induced 14
mm9_v1_chr9_-_103267697_103267728	7.09756	bHLH_family.p2	AB046372|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr15_-_79518160_79518352	7.0948	bHLH_family.p2	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr2_+_130100145_130100196	7.02204	bHLH_family.p2	NM_024193|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK009799|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK030730|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK011481|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK011744|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK013528|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK077795|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK139924|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK146243|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK150258|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK154024|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	BC021355|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)
mm9_v1_chr2_+_30141908_30141954	6.99728	bHLH_family.p2	BC028665|Nup188|227699|nucleoporin 188	AK052272|Nup188|227699|nucleoporin 188	BC032090|Nup188|227699|nucleoporin 188	BC096591|Nup188|227699|nucleoporin 188	AK129073|Nup188|227699|nucleoporin 188	NM_198304|Nup188|227699|nucleoporin 188
mm9_v1_chr3_-_27052794_27052801	6.99374	bHLH_family.p2	NM_001177626|Ect2|13605|ect2 oncogene
mm9_v1_chr5_-_66542161_66542216	6.96328	bHLH_family.p2	AK035620|Rbm47|245945|RNA binding motif protein 47	AK142584|Rbm47|245945|RNA binding motif protein 47	AK085733|Rbm47|245945|RNA binding motif protein 47	NM_178446|Rbm47|245945|RNA binding motif protein 47	BC112902|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr11_-_70796432_70796469	6.93904	bHLH_family.p2	AK010601|C1qbp|12261|complement component 1, q subcomponent binding protein	AF300619|C1qbp|12261|complement component 1, q subcomponent binding protein	AJ001101|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr8_+_3631116_3631169	6.92708	bHLH_family.p2	AK088364|Stxbp2|20911|syntaxin binding protein 2	BC008102|Stxbp2|20911|syntaxin binding protein 2	U19520|Stxbp2|20911|syntaxin binding protein 2	AF263345|Stxbp2|20911|syntaxin binding protein 2	AK133419|Stxbp2|20911|syntaxin binding protein 2	NM_011503|Stxbp2|20911|syntaxin binding protein 2	D42068|Stxbp2|20911|syntaxin binding protein 2	BC003477|Stxbp2|20911|syntaxin binding protein 2
mm9_v1_chr4_+_131830270_131830384	6.87179	bHLH_family.p2	AK132927|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025579|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007811|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK013133|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC019668|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK139748|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr3_-_27052733_27052775	6.82294	bHLH_family.p2	AK040174|Ect2|13605|ect2 oncogene	BC045614|Ect2|13605|ect2 oncogene	BC025565|Ect2|13605|ect2 oncogene	BC032155|Ect2|13605|ect2 oncogene	BC023881|Ect2|13605|ect2 oncogene	AK157718|Ect2|13605|ect2 oncogene	L11316|Ect2|13605|ect2 oncogene	AK220452|Ect2|13605|ect2 oncogene	NM_001177625|Ect2|13605|ect2 oncogene	NM_007900|Ect2|13605|ect2 oncogene
mm9_v1_chr5_+_28492235_28492251	6.81395	bHLH_family.p2	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr15_-_76444249_76444285	6.80528	bHLH_family.p2	AB052762|Slc39a4|72027|solute carrier family 39 (zinc transporter), member 4
mm9_v1_chrX_-_131135346_131135571	6.80155	bHLH_family.p2	AK040081|Gla|11605|galactosidase, alpha	AK164231|Gla|11605|galactosidase, alpha	AK166204|Gla|11605|galactosidase, alpha	U50716|Gla|11605|galactosidase, alpha	AK145011|Gla|11605|galactosidase, alpha	AK166245|Gla|11605|galactosidase, alpha	U34071|Gla|11605|galactosidase, alpha	AK054547|Gla|11605|galactosidase, alpha	BC009021|Gla|11605|galactosidase, alpha	AK145148|Gla|11605|galactosidase, alpha	NM_013463|Gla|11605|galactosidase, alpha
mm9_v1_chr14_-_51544362_51544454	6.79858	bHLH_family.p2	AK145181|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr7_-_134404120_134404235	6.78626	bHLH_family.p2	AK010606|Dctpp1|66422|dCTP pyrophosphatase 1	AK003643|Dctpp1|66422|dCTP pyrophosphatase 1	AK010508|Dctpp1|66422|dCTP pyrophosphatase 1	AF110764|Dctpp1|66422|dCTP pyrophosphatase 1	NM_023203|Dctpp1|66422|dCTP pyrophosphatase 1	BC004623|Dctpp1|66422|dCTP pyrophosphatase 1
mm9_v1_chr11_-_70796471_70796535	6.73923	bHLH_family.p2	AK010746|C1qbp|12261|complement component 1, q subcomponent binding protein	BC038075|C1qbp|12261|complement component 1, q subcomponent binding protein	AK169764|C1qbp|12261|complement component 1, q subcomponent binding protein	AK011868|C1qbp|12261|complement component 1, q subcomponent binding protein	NM_007573|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr14_-_51544484_51544489	6.73526	bHLH_family.p2	BC091757|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr1_-_75502814_75502969	6.72746	bHLH_family.p2	AK029863|Obsl1|98733|obscurin-like 1	AK162473|Obsl1|98733|obscurin-like 1	AK034852|Obsl1|98733|obscurin-like 1
mm9_v1_chr8_+_28370796_28370880	6.72536	bHLH_family.p2	NM_007918|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK167836|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	U28656|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	BC002045|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK170031|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK169979|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK013033|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1
mm9_v1_chr2_+_74520379_74520449	6.72145	bHLH_family.p2	BC138115|Hoxd11|15431|homeobox D11	NM_008273|Hoxd11|15431|homeobox D11
mm9_v1_chr16_+_16213397_16213405	6.71263	bHLH_family.p2	AK005020|Pkp2|67451|plakophilin 2
mm9_v1_chr4_+_151699834_151699937	6.67561	bHLH_family.p2	BC096390|Rpl22|19934|ribosomal protein L22
mm9_v1_chr6_-_131338282_131338457	6.64617	bHLH_family.p2	AF248546|Csda|56449|cold shock domain protein A	AF248547|Csda|56449|cold shock domain protein A	AF246224|Csda|56449|cold shock domain protein A	AK003145|Csda|56449|cold shock domain protein A	AK076041|Csda|56449|cold shock domain protein A	D14485|Csda|56449|cold shock domain protein A	BC048242|Csda|56449|cold shock domain protein A	BC062377|Csda|56449|cold shock domain protein A
mm9_v1_chr4_+_140257340_140257464	6.62171	bHLH_family.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr4_+_122960059_122960153	6.56996	bHLH_family.p2	BC058263|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	BC056432|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	NM_130881|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4
mm9_v1_chr5_+_53132801_53132856	6.56019	bHLH_family.p2	NM_025951|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	NM_028744|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK035523|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK170730|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK016754|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AY148879|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK011751|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chr14_+_31528034_31528081	6.52388	bHLH_family.p2	NM_019460|Sfmbt1|54650|Scm-like with four mbt domains 1	BC066188|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr3_+_137527575_137527613	6.52369	bHLH_family.p2	BC147478|H2afz|51788|H2A histone family, member Z	BC158035|H2afz|51788|H2A histone family, member Z	BC171999|H2afz|51788|H2A histone family, member Z
mm9_v1_chr11_+_99740500_99740500	6.51056	bHLH_family.p2	AK003994|Gm11567|670533|predicted gene 11567	NM_001101613|Gm11567|670533|predicted gene 11567
mm9_v1_chr5_+_38611707_38611872	6.49428	bHLH_family.p2	NM_025281|Lyar|17089|Ly1 antibody reactive clone	S60885|Lyar|17089|Ly1 antibody reactive clone	AK006373|Lyar|17089|Ly1 antibody reactive clone	AK211108|Lyar|17089|Ly1 antibody reactive clone	AK076727|Lyar|17089|Ly1 antibody reactive clone
mm9_v1_chr6_-_88848650_88848773	6.48969	bHLH_family.p2	AF004105|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK129039|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK077801|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088378|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	BC055318|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK145176|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088156|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146187|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	D86725|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146375|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK037751|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	NM_008564|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm9_v1_chr7_-_27981077_27981289	6.47933	bHLH_family.p2	L15447|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC096648|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK088550|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC094006|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK049541|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC003229|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK013886|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	NM_015782|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A
mm9_v1_chr14_-_70751120_70751274	6.45641	bHLH_family.p2	AK158096|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	AB177995|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	BC021530|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	NM_001135151|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	NM_144808|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14
mm9_v1_chr8_+_126545374_126545424	6.44298	bHLH_family.p2	AK133906|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm9_v1_chr6_-_52176102_52176188	6.4309	bHLH_family.p2	AB221551|Hoxa9|15405|homeobox A9	BC055059|Hoxa9|15405|homeobox A9
mm9_v1_chr16_-_33967064_33967149	6.41213	bHLH_family.p2	BC003887|Umps|22247|uridine monophosphate synthetase	BC095981|Umps|22247|uridine monophosphate synthetase	AK159808|Umps|22247|uridine monophosphate synthetase	AK159955|Umps|22247|uridine monophosphate synthetase	AK035821|Umps|22247|uridine monophosphate synthetase	AK035997|Umps|22247|uridine monophosphate synthetase	AK090102|Umps|22247|uridine monophosphate synthetase	AK135187|Umps|22247|uridine monophosphate synthetase	NM_009471|Umps|22247|uridine monophosphate synthetase
mm9_v1_chr17_-_26005680_26005704	6.41133	bHLH_family.p2	AK020614|Fam195a|68241|family with sequence similarity 195, member A	AK003564|Fam195a|68241|family with sequence similarity 195, member A	NM_026633|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr1_-_95375372_95375387	6.41084	bHLH_family.p2	BC027779|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC027788|Hdlbp|110611|high density lipoprotein (HDL) binding protein	NM_133808|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr9_-_35075338_35075393	6.38465	bHLH_family.p2	BC051180|Fam118b|109229|family with sequence similarity 118, member B	NM_194257|Fam118b|109229|family with sequence similarity 118, member B	AK079397|Fam118b|109229|family with sequence similarity 118, member B	AK168168|Fam118b|109229|family with sequence similarity 118, member B	AK009486|Fam118b|109229|family with sequence similarity 118, member B	AK081206|Fam118b|109229|family with sequence similarity 118, member B	AK153897|Fam118b|109229|family with sequence similarity 118, member B	AK169810|Fam118b|109229|family with sequence similarity 118, member B	NM_175411|Fam118b|109229|family with sequence similarity 118, member B
mm9_v1_chr11_-_69734709_69734796	6.38295	bHLH_family.p2	AK178863|Eif5a|276770|eukaryotic translation initiation factor 5A	AK188886|Eif5a|276770|eukaryotic translation initiation factor 5A	BC008093|Eif5a|276770|eukaryotic translation initiation factor 5A	BC003889|Eif5a|276770|eukaryotic translation initiation factor 5A	BC024899|Eif5a|276770|eukaryotic translation initiation factor 5A	AK011470|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166595|Eif5a|276770|eukaryotic translation initiation factor 5A	AK010183|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr11_-_70034477_70034547	6.38198	bHLH_family.p2	AK028143|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	AK028759|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	NM_172371|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm9_v1_chr2_-_32549637_32549722	6.37503	bHLH_family.p2	BC005484|Fpgs|14287|folylpolyglutamyl synthetase	U32197|Fpgs|14287|folylpolyglutamyl synthetase	AK041952|Fpgs|14287|folylpolyglutamyl synthetase	AK157040|Fpgs|14287|folylpolyglutamyl synthetase	U33557|Fpgs|14287|folylpolyglutamyl synthetase	NM_010236|Fpgs|14287|folylpolyglutamyl synthetase
mm9_v1_chr10_+_76729969_76729979	6.35185	bHLH_family.p2	AK190199|Pofut2|80294|protein O-fucosyltransferase 2	AK215796|Pofut2|80294|protein O-fucosyltransferase 2
mm9_v1_chr4_-_55545211_55545278	6.35172	bHLH_family.p2	BC010301|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr5_-_140290195_140290236	6.3517	bHLH_family.p2	BC026659|Tmem184a|231832|transmembrane protein 184a	AK050489|Tmem184a|231832|transmembrane protein 184a	NM_001161548|Tmem184a|231832|transmembrane protein 184a
mm9_v1_chr12_-_78063011_78063244	6.33375	bHLH_family.p2	S80521|Max|17187|Max protein	BC138671|Max|17187|Max protein	BC138672|Max|17187|Max protein	BC145369|Max|17187|Max protein	M63903|Max|17187|Max protein	AK080431|Max|17187|Max protein	NM_001146176|Max|17187|Max protein	NM_008558|Max|17187|Max protein
mm9_v1_chr9_-_20781133_20781171	6.33212	bHLH_family.p2	BC096760|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK159605|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK134275|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK151062|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK153398|S1pr2|14739|sphingosine-1-phosphate receptor 2
mm9_v1_chr2_+_164659268_164659347	6.32081	bHLH_family.p2	AK159150|Ctsa|19025|cathepsin A	AK032197|Ctsa|19025|cathepsin A	AK159766|Ctsa|19025|cathepsin A	BC018534|Ctsa|19025|cathepsin A
mm9_v1_chr5_+_145016060_145016213	6.31721	bHLH_family.p2	AK049027|Bri3|55950|brain protein I3	NM_018772|Bri3|55950|brain protein I3	AK080467|Bri3|55950|brain protein I3	BC005677|Bri3|55950|brain protein I3	BC095955|Bri3|55950|brain protein I3	BC021149|Bri3|55950|brain protein I3	AF106967|Bri3|55950|brain protein I3
mm9_v1_chr5_-_140865121_140865262	6.30163	bHLH_family.p2	AK045061|Snx8|231834|sorting nexin 8	AK082871|Snx8|231834|sorting nexin 8	AK148429|Snx8|231834|sorting nexin 8	NM_172277|Snx8|231834|sorting nexin 8	BC037599|Snx8|231834|sorting nexin 8
mm9_v1_chr8_+_108583449_108583790	6.29363	bHLH_family.p2	NM_010901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK147708|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK155087|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK051602|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK134054|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK039929|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK220187|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120900|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	D85612|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887629|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887630|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887631|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
mm9_v1_chr7_+_135052004_135052051	6.27743	bHLH_family.p2	
mm9_v1_chr2_+_144096600_144096679	6.26987	bHLH_family.p2	AK159286|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	BC063088|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr7_-_97278443_97278523	6.26479	bHLH_family.p2	AK019082|2310010J17Rik|78329|RIKEN cDNA 2310010J17 gene
mm9_v1_chr12_+_53198729_53198769	6.21448	bHLH_family.p2	NM_029760|Nubpl|76826|nucleotide binding protein-like	AK152377|Nubpl|76826|nucleotide binding protein-like	AK083643|Nubpl|76826|nucleotide binding protein-like	BC062175|Nubpl|76826|nucleotide binding protein-like	AK010827|Nubpl|76826|nucleotide binding protein-like	AK141257|Nubpl|76826|nucleotide binding protein-like
mm9_v1_chr10_-_94786634_94786766	6.20116	bHLH_family.p2	AK052304|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK136561|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AJ224738|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	NM_009950|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK163112|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK144648|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain
mm9_v1_chr8_-_72498210_72498309	6.19637	bHLH_family.p2	NM_001113346|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr17_+_84105481_84105596	6.17248	bHLH_family.p2	NM_001171052|Mta3|116871|metastasis associated 3	NM_001171053|Mta3|116871|metastasis associated 3	NM_001171054|Mta3|116871|metastasis associated 3	NM_054082|Mta3|116871|metastasis associated 3	BC022124|Mta3|116871|metastasis associated 3	AF288138|Mta3|116871|metastasis associated 3	AK146721|Mta3|116871|metastasis associated 3	AK146905|Mta3|116871|metastasis associated 3	AK147197|Mta3|116871|metastasis associated 3	AK154856|Mta3|116871|metastasis associated 3	AK158866|Mta3|116871|metastasis associated 3	AK129318|Mta3|116871|metastasis associated 3	AK145942|Mta3|116871|metastasis associated 3	BC099960|Mta3|116871|metastasis associated 3
mm9_v1_chr3_+_159158396_159158460	6.16999	bHLH_family.p2	NM_001172092|Depdc1a|76131|DEP domain containing 1a	NM_001172093|Depdc1a|76131|DEP domain containing 1a	NM_029523|Depdc1a|76131|DEP domain containing 1a	BC023934|Depdc1a|76131|DEP domain containing 1a	AK088719|Depdc1a|76131|DEP domain containing 1a	AK146458|Depdc1a|76131|DEP domain containing 1a	AK050456|Depdc1a|76131|DEP domain containing 1a
mm9_v1_chr15_+_99803329_99803358	6.16402	bHLH_family.p2	AK139909|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr15_+_102109859_102110015	6.15828	bHLH_family.p2	AK087550|Mfsd5|106073|major facilitator superfamily domain containing 5	AK089268|Mfsd5|106073|major facilitator superfamily domain containing 5	NM_134100|Mfsd5|106073|major facilitator superfamily domain containing 5	AK165774|Mfsd5|106073|major facilitator superfamily domain containing 5
mm9_v1_chr9_-_107191674_107191745	6.15428	bHLH_family.p2	DQ899946|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK087496|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chrX_-_159267249_159267385	6.15026	bHLH_family.p2	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr4_+_88783273_88783343	6.11019	bHLH_family.p2	AK167319|Mtap|66902|methylthioadenosine phosphorylase	NM_024433|Mtap|66902|methylthioadenosine phosphorylase	AK005064|Mtap|66902|methylthioadenosine phosphorylase	AK011421|Mtap|66902|methylthioadenosine phosphorylase	BC003858|Mtap|66902|methylthioadenosine phosphorylase	AK089916|Mtap|66902|methylthioadenosine phosphorylase
mm9_v1_chr17_-_48061354_48061450	6.10815	bHLH_family.p2	BC043702|Foxp4|74123|forkhead box P4	AY135029|Foxp4|74123|forkhead box P4	BC052407|Foxp4|74123|forkhead box P4	AK004693|Foxp4|74123|forkhead box P4	AB052766|Foxp4|74123|forkhead box P4	BC023368|Foxp4|74123|forkhead box P4	AK143194|Foxp4|74123|forkhead box P4
mm9_v1_chr10_-_88289526_88289560	6.08311	bHLH_family.p2	AK145554|Utp20|70683|UTP20, small subunit (SSU) processome component, homolog (yeast)	BC084586|Utp20|70683|UTP20, small subunit (SSU) processome component, homolog (yeast)	NM_175158|Utp20|70683|UTP20, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr17_+_57388873_57388970	6.0735	bHLH_family.p2	NM_134125|Trip10|106628|thyroid hormone receptor interactor 10	BC003249|Trip10|106628|thyroid hormone receptor interactor 10	AK149902|Trip10|106628|thyroid hormone receptor interactor 10	AY081142|Trip10|106628|thyroid hormone receptor interactor 10	AK088909|Trip10|106628|thyroid hormone receptor interactor 10	AF502565|Trip10|106628|thyroid hormone receptor interactor 10
mm9_v1_chr3_-_88717730_88717876	6.06821	bHLH_family.p2	AK163280|Msto1|229524|misato homolog 1 (Drosophila)	BC108354|Msto1|229524|misato homolog 1 (Drosophila)	AK167586|Msto1|229524|misato homolog 1 (Drosophila)	BC008103|Msto1|229524|misato homolog 1 (Drosophila)	AK166834|Msto1|229524|misato homolog 1 (Drosophila)	AK166236|Msto1|229524|misato homolog 1 (Drosophila)	AK170160|Msto1|229524|misato homolog 1 (Drosophila)	AK139708|Msto1|229524|misato homolog 1 (Drosophila)	NM_144898|Msto1|229524|misato homolog 1 (Drosophila)
mm9_v1_chr3_+_104442568_104442606	6.0528	bHLH_family.p2	AK033516|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK079379|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK088762|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK161701|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK162682|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK166606|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	NM_009196|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	BC014777|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AF058055|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1
mm9_v1_chr4_-_118966945_118967127	6.0288	bHLH_family.p2	X57621|Ybx1|22608|Y box protein 1	M62867|Ybx1|22608|Y box protein 1	U33196|Ybx1|22608|Y box protein 1	BC029747|Ybx1|22608|Y box protein 1	BC013620|Ybx1|22608|Y box protein 1	M60419|Ybx1|22608|Y box protein 1	BC061634|Ybx1|22608|Y box protein 1	BC031472|Ybx1|22608|Y box protein 1	BC049977|Ybx1|22608|Y box protein 1	BC013450|Ybx1|22608|Y box protein 1	AK011890|Ybx1|22608|Y box protein 1	AK150821|Ybx1|22608|Y box protein 1	NM_011732|Ybx1|22608|Y box protein 1
mm9_v1_chr19_-_3686441_3686567	6.01067	bHLH_family.p2	AF077847|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK220186|Lrp5|16973|low density lipoprotein receptor-related protein 5	BC011374|Lrp5|16973|low density lipoprotein receptor-related protein 5	BC094610|Lrp5|16973|low density lipoprotein receptor-related protein 5	AF064984|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147068|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147231|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147330|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK081025|Lrp5|16973|low density lipoprotein receptor-related protein 5	NM_008513|Lrp5|16973|low density lipoprotein receptor-related protein 5
mm9_v1_chr19_-_27504303_27504360	5.97916	bHLH_family.p2	AK088081|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	AK141893|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	BC145533|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	NM_177474|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	AK050829|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	BC016186|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed
mm9_v1_chr13_+_21272294_21272469	5.96426	bHLH_family.p2	BC003219|Trim27|19720|tripartite motif-containing 27	AK088180|Trim27|19720|tripartite motif-containing 27	X75343|Trim27|19720|tripartite motif-containing 27
mm9_v1_chr11_-_94515067_94515072	5.95277	bHLH_family.p2	AK078516|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)	NM_177752|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr9_-_20781206_20781236	5.92182	bHLH_family.p2	AK170436|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK085114|S1pr2|14739|sphingosine-1-phosphate receptor 2	NM_010333|S1pr2|14739|sphingosine-1-phosphate receptor 2
mm9_v1_chr11_-_69734131_69734131	5.91712	bHLH_family.p2	AY129324|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166590|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr2_+_144096696_144096740	5.91086	bHLH_family.p2	AK043140|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK018387|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK167919|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr11_-_84326869_84327030	5.90838	bHLH_family.p2	AY306199|Aatf|56321|apoptosis antagonizing transcription factor	BC025080|Aatf|56321|apoptosis antagonizing transcription factor	AK141334|Aatf|56321|apoptosis antagonizing transcription factor	AF222801|Aatf|56321|apoptosis antagonizing transcription factor	NM_019816|Aatf|56321|apoptosis antagonizing transcription factor	AK077789|Aatf|56321|apoptosis antagonizing transcription factor
mm9_v1_chr4_+_140258090_140258179	5.88841	bHLH_family.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr2_+_29921953_29922366	5.86565	bHLH_family.p2	AK019960|Set|56086|SET nuclear oncogene	AB015613|Set|56086|SET nuclear oncogene
mm9_v1_chr11_+_64792527_64792682	5.86293	bHLH_family.p2	AK156730|Elac2|68626|elaC homolog 2 (E. coli)	NM_023479|Elac2|68626|elaC homolog 2 (E. coli)	AK172604|Elac2|68626|elaC homolog 2 (E. coli)	BC023134|Elac2|68626|elaC homolog 2 (E. coli)	AF308696|Elac2|68626|elaC homolog 2 (E. coli)	BC048235|Elac2|68626|elaC homolog 2 (E. coli)
mm9_v1_chr9_-_107192203_107192207	5.85726	bHLH_family.p2	AK170456|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	BC031467|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	NM_178907|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chr11_+_69778907_69778927	5.85302	bHLH_family.p2	AK145504|Cldn7|53624|claudin 7	NM_016887|Cldn7|53624|claudin 7
mm9_v1_chr1_+_180117547_180117811	5.85208	bHLH_family.p2	AK029574|Pppde1|78825|PPPDE peptidase domain containing 1	NM_024282|Pppde1|78825|PPPDE peptidase domain containing 1	AK020014|Pppde1|78825|PPPDE peptidase domain containing 1	AK049579|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr14_-_47809063_47809127	5.83809	bHLH_family.p2	L09737|Gch1|14528|GTP cyclohydrolase 1	BC005643|Gch1|14528|GTP cyclohydrolase 1	NM_008102|Gch1|14528|GTP cyclohydrolase 1	BC069921|Gch1|14528|GTP cyclohydrolase 1	AK150657|Gch1|14528|GTP cyclohydrolase 1	AK152571|Gch1|14528|GTP cyclohydrolase 1
mm9_v1_chr12_+_72237834_72237834	5.83656	bHLH_family.p2	BC043104|2700049A03Rik|76967|RIKEN cDNA 2700049A03 gene	NM_001163378|2700049A03Rik|76967|RIKEN cDNA 2700049A03 gene	NM_029818|2700049A03Rik|76967|RIKEN cDNA 2700049A03 gene
mm9_v1_chrX_-_138159759_138159833	5.83175	bHLH_family.p2	BC060235|Irs4|16370|insulin receptor substrate 4	NM_010572|Irs4|16370|insulin receptor substrate 4	BC150782|Irs4|16370|insulin receptor substrate 4
mm9_v1_chr11_-_94515034_94515062	5.80687	bHLH_family.p2	BC089459|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr4_-_11313886_11313929	5.77727	bHLH_family.p2	AK140848|Esrp1|207920|epithelial splicing regulatory protein 1	NM_194055|Esrp1|207920|epithelial splicing regulatory protein 1
mm9_v1_chr6_+_125046576_125046586	5.7637	bHLH_family.p2	AK020564|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr17_-_56419161_56419235	5.7576	bHLH_family.p2	AK200250|Plin3|66905|perilipin 3	AK201044|Plin3|66905|perilipin 3	AK210643|Plin3|66905|perilipin 3	AK213759|Plin3|66905|perilipin 3
mm9_v1_chr11_-_100389196_100389291	5.75489	bHLH_family.p2	AK132755|Acly|104112|ATP citrate lyase	BC056378|Acly|104112|ATP citrate lyase	NM_134037|Acly|104112|ATP citrate lyase	AK149660|Acly|104112|ATP citrate lyase
mm9_v1_chr9_-_44150387_44150463	5.72563	bHLH_family.p2	AK028234|Hmbs|15288|hydroxymethylbilane synthase	AK143558|Hmbs|15288|hydroxymethylbilane synthase	AK158160|Hmbs|15288|hydroxymethylbilane synthase	NM_001110251|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr11_-_70034272_70034332	5.71599	bHLH_family.p2	BC039949|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm9_v1_chr1_+_174430081_174430179	5.71244	bHLH_family.p2	BC049861|Tagln2|21346|transgelin 2
mm9_v1_chr8_+_13338741_13338850	5.69672	bHLH_family.p2	AK019997|Tfdp1|21781|transcription factor Dp 1	AK154037|Tfdp1|21781|transcription factor Dp 1	AK030820|Tfdp1|21781|transcription factor Dp 1	BC058633|Tfdp1|21781|transcription factor Dp 1	AK013180|Tfdp1|21781|transcription factor Dp 1
mm9_v1_chr11_-_120494842_120494902	5.69623	bHLH_family.p2	BC052633|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	NM_010756|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chr11_-_120673433_120673522	5.69494	bHLH_family.p2	X13135|Fasn|14104|fatty acid synthase	BC059850|Fasn|14104|fatty acid synthase
mm9_v1_chr11_-_97560943_97560996	5.68601	bHLH_family.p2	NM_001163308|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr17_-_26005645_26005674	5.67065	bHLH_family.p2	BC024332|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr7_+_35904347_35904361	5.66856	bHLH_family.p2	AK155281|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr17_-_28623006_28623098	5.65665	bHLH_family.p2	U36220|Fkbp5|14229|FK506 binding protein 5	BC015260|Fkbp5|14229|FK506 binding protein 5	AK169795|Fkbp5|14229|FK506 binding protein 5	NM_010220|Fkbp5|14229|FK506 binding protein 5	U16959|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr14_-_68333397_68333419	5.64762	bHLH_family.p2	BC067009|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr19_-_7315495_7315711	5.6446	bHLH_family.p2	AK202154|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK035418|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033510|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK170548|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033896|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK089209|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK162625|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	BC020020|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK016504|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	NM_027643|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm9_v1_chr16_-_20302299_20302462	5.63724	bHLH_family.p2	AK039142|Parl|381038|presenilin associated, rhomboid-like	BC083153|Parl|381038|presenilin associated, rhomboid-like	AK151652|Parl|381038|presenilin associated, rhomboid-like	NM_001005767|Parl|381038|presenilin associated, rhomboid-like	AK150980|Parl|381038|presenilin associated, rhomboid-like	AK207637|Parl|381038|presenilin associated, rhomboid-like
mm9_v1_chr8_-_124431245_124431547	5.63632	bHLH_family.p2	AK148134|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB023409|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB017189|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr11_-_88725877_88725929	5.61094	bHLH_family.p2	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr17_+_24889931_24889960	5.5921	bHLH_family.p2	AK146974|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	AY574375|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	NM_001012402|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	BC132520|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	BC138814|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	BC145424|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6
mm9_v1_chr9_+_35366065_35366179	5.59118	bHLH_family.p2	AK030639|Pus3|67049|pseudouridine synthase 3
mm9_v1_chr11_-_115873976_115874034	5.58681	bHLH_family.p2	AB027012|Galk1|14635|galactokinase 1	AK168716|Galk1|14635|galactokinase 1	BC050151|Galk1|14635|galactokinase 1	AK045694|Galk1|14635|galactokinase 1	BC016602|Galk1|14635|galactokinase 1	AK010340|Galk1|14635|galactokinase 1	AK011103|Galk1|14635|galactokinase 1	AK088151|Galk1|14635|galactokinase 1	NM_016905|Galk1|14635|galactokinase 1
mm9_v1_chr18_-_61008391_61008636	5.57357	bHLH_family.p2	U81030|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	AF001794|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC057342|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC060105|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC046608|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC052669|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	AK089518|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC021514|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	NM_001198984|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	NM_011552|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog
mm9_v1_chr5_-_66542128_66542136	5.56685	bHLH_family.p2	AK089362|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr6_-_31513817_31513936	5.5511	bHLH_family.p2	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr4_-_34830178_34830200	5.5415	bHLH_family.p2	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr4_+_19935558_19935623	5.54047	bHLH_family.p2	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr16_-_18811669_18811731	5.53447	bHLH_family.p2	AF081537|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AF081538|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AK147013|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AJ223729|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	BC006856|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AF098068|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AK167850|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	BC028635|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	NM_001161623|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)
mm9_v1_chr7_-_87543749_87543798	5.52459	bHLH_family.p2	X54056|Furin|18550|furin (paired basic amino acid cleaving enzyme)	BC048234|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr2_-_37558794_37558806	5.52275	bHLH_family.p2	BC014710|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr15_+_101904203_101904238	5.49551	bHLH_family.p2	NM_145625|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr11_-_99665759_99665763	5.48584	bHLH_family.p2	AK009035|Krtap4-13|69464|keratin associated protein 4-13	NM_001099312|Gm11569|670472|predicted gene 11569	NM_001099313|Gm11554|670482|predicted gene 11554	NM_027087|Krtap4-13|69464|keratin associated protein 4-13
mm9_v1_chr17_-_56256950_56256977	5.48032	bHLH_family.p2	BC024138|Plin5|66968|perilipin 5	DQ473305|Plin5|66968|perilipin 5	AK075872|Plin5|66968|perilipin 5	AK010202|Plin5|66968|perilipin 5	NM_025874|Plin5|66968|perilipin 5
mm9_v1_chr11_-_99471502_99471502	5.45707	bHLH_family.p2	NM_001099346|Gm11937|100041488|predicted gene 11937
mm9_v1_chr6_-_52154325_52154433	5.44118	bHLH_family.p2	AK144356|Hoxa5|15402|homeobox A5	AB221550|Hoxa5|15402|homeobox A5	BC011063|Hoxa5|15402|homeobox A5
mm9_v1_chr9_+_106379599_106379678	5.42969	bHLH_family.p2	AK076113|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	BC014703|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	NM_145620|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	AK156199|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	AF368232|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr4_+_147314951_147315041	5.42786	bHLH_family.p2	AK011059|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK153761|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	NM_029841|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	BC012878|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK173332|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr14_-_31832274_31832280	5.42669	bHLH_family.p2	NM_153547|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK167094|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)
mm9_v1_chr4_-_116666956_116667029	5.41396	bHLH_family.p2	AK002844|Urod|22275|uroporphyrinogen decarboxylase	AK007470|Urod|22275|uroporphyrinogen decarboxylase	AK135090|Urod|22275|uroporphyrinogen decarboxylase	BC008109|Urod|22275|uroporphyrinogen decarboxylase	NM_009478|Urod|22275|uroporphyrinogen decarboxylase	AK172426|Urod|22275|uroporphyrinogen decarboxylase
mm9_v1_chr10_+_21878374_21878474	5.40872	bHLH_family.p2	AK131854|Raet1e|379043|retinoic acid early transcript 1E	AB284505|H60b|667281|histocompatibility 60b	D64160|Raet1a|19368|retinoic acid early transcript 1, alpha	NM_009016|Raet1a|19368|retinoic acid early transcript 1, alpha	FJ594065|Raet1e|379043|retinoic acid early transcript 1E	FJ594067|Raet1e|379043|retinoic acid early transcript 1E	FJ594068|Raet1e|379043|retinoic acid early transcript 1E
mm9_v1_chr5_+_31357119_31357185	5.4026	bHLH_family.p2	BC053097|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	NM_023525|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC060119|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr6_-_148779856_148779997	5.3968	bHLH_family.p2	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr7_-_149415875_149415881	5.39426	bHLH_family.p2	BC111113|Krtap5-5|114666|keratin associated protein 5-5	NM_001037822|Krtap5-5|114666|keratin associated protein 5-5	AK020690|Krtap5-5|114666|keratin associated protein 5-5
mm9_v1_chr1_+_72871060_72871146	5.38719	bHLH_family.p2	AK012703|Igfbp2|16008|insulin-like growth factor binding protein 2	BC012724|Igfbp2|16008|insulin-like growth factor binding protein 2	NM_008342|Igfbp2|16008|insulin-like growth factor binding protein 2	BC054473|Igfbp2|16008|insulin-like growth factor binding protein 2	X81580|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011784|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011790|Igfbp2|16008|insulin-like growth factor binding protein 2
mm9_v1_chr1_+_188791294_188791299	5.38473	bHLH_family.p2	AK029542|D1Pas1|110957|DNA segment, Chr 1, Pasteur Institute 1	NM_033077|D1Pas1|110957|DNA segment, Chr 1, Pasteur Institute 1	BC139286|D1Pas1|110957|DNA segment, Chr 1, Pasteur Institute 1	BC139287|D1Pas1|110957|DNA segment, Chr 1, Pasteur Institute 1
mm9_v1_chr14_-_52816830_52816940	5.37672	bHLH_family.p2	AK158116|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AK148506|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AF323667|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AK146529|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	NM_033618|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AK169561|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr6_+_125045998_125046234	5.37651	bHLH_family.p2	AK147695|Chd4|107932|chromodomain helicase DNA binding protein 4	AK040005|Chd4|107932|chromodomain helicase DNA binding protein 4	AK132004|Chd4|107932|chromodomain helicase DNA binding protein 4	BC058578|Chd4|107932|chromodomain helicase DNA binding protein 4	NM_145979|Chd4|107932|chromodomain helicase DNA binding protein 4	AK145532|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr3_+_105762363_105762420	5.37475	bHLH_family.p2	AK078856|Wdr77|70465|WD repeat domain 77	AK048488|Wdr77|70465|WD repeat domain 77	AK168752|Wdr77|70465|WD repeat domain 77	AK050391|Wdr77|70465|WD repeat domain 77	AK168006|Wdr77|70465|WD repeat domain 77	NM_027432|Wdr77|70465|WD repeat domain 77	AK169128|Wdr77|70465|WD repeat domain 77	AK163839|Wdr77|70465|WD repeat domain 77
mm9_v1_chr11_-_106993235_106993235	5.36333	bHLH_family.p2	NM_176850|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr17_+_33961535_33961572	5.3559	bHLH_family.p2	AK002476|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	AK003468|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	BC055698|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	BC052817|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	NM_023202|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	AK010299|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm9_v1_chr3_+_105762425_105762460	5.3463	bHLH_family.p2	AK012014|Wdr77|70465|WD repeat domain 77	AK161812|Wdr77|70465|WD repeat domain 77	BC005755|Wdr77|70465|WD repeat domain 77
mm9_v1_chr7_-_26035683_26035785	5.32358	bHLH_family.p2	BC063092|Erf|13875|Ets2 repressor factor	BC053045|Erf|13875|Ets2 repressor factor	BC059176|Erf|13875|Ets2 repressor factor	AK159225|Erf|13875|Ets2 repressor factor	NM_010155|Erf|13875|Ets2 repressor factor
mm9_v1_chr8_-_125075222_125075228	5.32106	bHLH_family.p2	NM_001037298|Fam38a|234839|family with sequence similarity 38, member A
mm9_v1_chr19_+_25685026_25685032	5.31818	bHLH_family.p2	AF541936|Dmrt3|240590|doublesex and mab-3 related transcription factor 3	NM_177360|Dmrt3|240590|doublesex and mab-3 related transcription factor 3	BC052041|Dmrt3|240590|doublesex and mab-3 related transcription factor 3
mm9_v1_chr13_-_114408704_114408818	5.2982	bHLH_family.p2	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr1_+_122499031_122499257	5.29365	bHLH_family.p2	NM_010133|En1|13798|engrailed 1	AK140408|En1|13798|engrailed 1	L12703|En1|13798|engrailed 1
mm9_v1_chr12_+_25336138_25336389	5.27941	bHLH_family.p2	AK038397|Klf11|194655|Kruppel-like factor 11	AK050156|Klf11|194655|Kruppel-like factor 11	NM_178357|Klf11|194655|Kruppel-like factor 11	BC060642|Klf11|194655|Kruppel-like factor 11	AK161233|Klf11|194655|Kruppel-like factor 11	AK082838|Klf11|194655|Kruppel-like factor 11	AK036618|Klf11|194655|Kruppel-like factor 11	AK089044|Klf11|194655|Kruppel-like factor 11	AK084913|Klf11|194655|Kruppel-like factor 11	AK085319|Klf11|194655|Kruppel-like factor 11	AK054170|Klf11|194655|Kruppel-like factor 11	AJ459773|Klf11|194655|Kruppel-like factor 11
mm9_v1_chr11_+_96132643_96132643	5.24756	bHLH_family.p2	NM_008270|Hoxb9|15417|homeobox B9
mm9_v1_chr11_-_100389160_100389193	5.24621	bHLH_family.p2	AK169703|Acly|104112|ATP citrate lyase	AK135528|Acly|104112|ATP citrate lyase	AK162364|Acly|104112|ATP citrate lyase
mm9_v1_chr1_+_61685397_61685574	5.23978	bHLH_family.p2	AK013352|Pard3b|72823|par-3 partitioning defective 3 homolog B (C. elegans)	NM_001081050|Pard3b|72823|par-3 partitioning defective 3 homolog B (C. elegans)	AK051398|Pard3b|72823|par-3 partitioning defective 3 homolog B (C. elegans)	AK031487|Pard3b|72823|par-3 partitioning defective 3 homolog B (C. elegans)	AK141451|Pard3b|72823|par-3 partitioning defective 3 homolog B (C. elegans)	AK008055|Pard3b|72823|par-3 partitioning defective 3 homolog B (C. elegans)
mm9_v1_chr7_-_4741145_4741257	5.23256	bHLH_family.p2	AK008900|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	NM_029384|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	BC132101|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	BC144965|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene
mm9_v1_chr16_+_20611637_20611755	5.23106	bHLH_family.p2	AK007407|Ece2|107522|endothelin converting enzyme 2	AK007791|Ece2|107522|endothelin converting enzyme 2	BC115541|Ece2|107522|endothelin converting enzyme 2	BC115542|Ece2|107522|endothelin converting enzyme 2	NM_025462|Ece2|107522|endothelin converting enzyme 2	NM_177940|Ece2|107522|endothelin converting enzyme 2	NM_177941|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr3_+_87710417_87710583	5.2027	bHLH_family.p2	AK076021|Hdgf|15191|hepatoma-derived growth factor	AK005359|Hdgf|15191|hepatoma-derived growth factor	D63707|Hdgf|15191|hepatoma-derived growth factor	AK029475|Hdgf|15191|hepatoma-derived growth factor
mm9_v1_chr9_+_61220162_61220251	5.19873	bHLH_family.p2	NM_001083927|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)	NM_001083928|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)	NM_009389|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm9_v1_chr19_-_4615180_4615322	5.18712	bHLH_family.p2	BC023156|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr19_-_10278231_10278434	5.17003	bHLH_family.p2	AK187493|Fen1|14156|flap structure specific endonuclease 1	BC010203|Fen1|14156|flap structure specific endonuclease 1	AK042942|Fen1|14156|flap structure specific endonuclease 1	AK153889|Fen1|14156|flap structure specific endonuclease 1	AK158431|Fen1|14156|flap structure specific endonuclease 1	AK166948|Fen1|14156|flap structure specific endonuclease 1	AK076977|Fen1|14156|flap structure specific endonuclease 1	AK161047|Fen1|14156|flap structure specific endonuclease 1	BC027295|Fen1|14156|flap structure specific endonuclease 1	AK078778|Fen1|14156|flap structure specific endonuclease 1	AK168731|Fen1|14156|flap structure specific endonuclease 1	AK046256|Fen1|14156|flap structure specific endonuclease 1	NM_007999|Fen1|14156|flap structure specific endonuclease 1
mm9_v1_chrX_-_7248403_7248534	5.16701	bHLH_family.p2	BC119088|Plp2|18824|proteolipid protein 2	BC119090|Plp2|18824|proteolipid protein 2	NM_019755|Plp2|18824|proteolipid protein 2	AB031292|Plp2|18824|proteolipid protein 2	BC092095|Plp2|18824|proteolipid protein 2	BC083078|Plp2|18824|proteolipid protein 2	AK011282|Plp2|18824|proteolipid protein 2	AK003522|Plp2|18824|proteolipid protein 2	AK154228|Plp2|18824|proteolipid protein 2	AK012816|Plp2|18824|proteolipid protein 2
mm9_v1_chr18_-_60908267_60908331	5.16069	bHLH_family.p2	AK147282|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AK035642|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr7_-_53086135_53086313	5.15753	bHLH_family.p2	BC008121|Grwd1|101612|glutamate-rich WD repeat containing 1	BC083143|Grwd1|101612|glutamate-rich WD repeat containing 1	BC028896|Grwd1|101612|glutamate-rich WD repeat containing 1	NM_153419|Grwd1|101612|glutamate-rich WD repeat containing 1	AK077611|Grwd1|101612|glutamate-rich WD repeat containing 1	AB001539|Grwd1|101612|glutamate-rich WD repeat containing 1
mm9_v1_chr9_+_14589122_14589203	5.15284	bHLH_family.p2	AK141214|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	BC065144|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	NM_018736|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK041248|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)
mm9_v1_chr6_+_52195030_52195080	5.15056	bHLH_family.p2	U20367|Hoxa11as|15397|HOXA11 antisense RNA (non-protein coding)
mm9_v1_chr4_-_109337891_109337976	5.1398	bHLH_family.p2	AK003933|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	BC027026|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	NM_007671|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm9_v1_chr12_+_77356170_77356369	5.13525	bHLH_family.p2	NM_138745|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK129012|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK042019|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr10_+_5914137_5914281	5.13132	bHLH_family.p2	NM_025343|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	AK169025|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	AK075603|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	BC027299|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)	AK007323|Rmnd1|66084|required for meiotic nuclear division 1 homolog (S. cerevisiae)
mm9_v1_chr10_-_39862004_39862094	5.11507	bHLH_family.p2	AK151636|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK036743|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK144135|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151290|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151704|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK157355|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165240|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165579|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_001114332|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_028247|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK050229|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK011813|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm9_v1_chr7_-_54051250_54051427	5.10935	bHLH_family.p2	BC082542|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005247|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005248|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001167864|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	BC046443|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)
mm9_v1_chr15_+_101904294_101904371	5.09763	bHLH_family.p2	BC147746|Eif4b|75705|eukaryotic translation initiation factor 4B	BC147748|Eif4b|75705|eukaryotic translation initiation factor 4B	AK077423|Eif4b|75705|eukaryotic translation initiation factor 4B	AK170256|Eif4b|75705|eukaryotic translation initiation factor 4B	AK148012|Eif4b|75705|eukaryotic translation initiation factor 4B	AK163266|Eif4b|75705|eukaryotic translation initiation factor 4B	AK166363|Eif4b|75705|eukaryotic translation initiation factor 4B	AK168425|Eif4b|75705|eukaryotic translation initiation factor 4B	AK168350|Eif4b|75705|eukaryotic translation initiation factor 4B	AK045250|Eif4b|75705|eukaryotic translation initiation factor 4B	BC036293|Eif4b|75705|eukaryotic translation initiation factor 4B	AK161693|Eif4b|75705|eukaryotic translation initiation factor 4B	AK170354|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr8_-_13890244_13890296	5.09116	bHLH_family.p2	BC029192|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK010573|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK008882|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	NM_025556|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene
mm9_v1_chr17_-_71201055_71201077	5.08755	bHLH_family.p2	BC012700|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164075|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr9_+_14589080_14589119	5.07583	bHLH_family.p2	U58987|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	U60318|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168208|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146234|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146370|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168180|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)
mm9_v1_chr8_+_94881868_94881901	5.07436	bHLH_family.p2	AK004747|Irx5|54352|Iroquois related homeobox 5 (Drosophila)	BC051959|Irx5|54352|Iroquois related homeobox 5 (Drosophila)
mm9_v1_chr12_+_77356412_77356500	5.06756	bHLH_family.p2	AK088700|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AF364579|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK180541|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr13_+_73764358_73764477	5.06685	bHLH_family.p2	AK133783|Tert|21752|telomerase reverse transcriptase	BC082327|Tert|21752|telomerase reverse transcriptase	AF051911|Tert|21752|telomerase reverse transcriptase	NM_009354|Tert|21752|telomerase reverse transcriptase	BC127068|Tert|21752|telomerase reverse transcriptase	AF073311|Tert|21752|telomerase reverse transcriptase
mm9_v1_chr8_-_87549120_87549191	5.06326	bHLH_family.p2	BC016453|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	BC083335|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AF039405|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	NM_019652|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK007827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK171690|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr8_+_87213209_87213224	5.06203	bHLH_family.p2	AK032945|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_144096582_144096606	5.03737	bHLH_family.p2	BC002242|Snx5|69178|sorting nexin 5
mm9_v1_chr13_-_94269616_94269653	5.03021	bHLH_family.p2	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr4_+_11118500_11118500	5.03017	bHLH_family.p2	NM_001037134|Ccne2|12448|cyclin E2
mm9_v1_chr11_+_98308333_98308404	5.02152	bHLH_family.p2	AK145996|Grb7|14786|growth factor receptor bound protein 7	BC081547|Grb7|14786|growth factor receptor bound protein 7	AK168438|Grb7|14786|growth factor receptor bound protein 7	AK220277|Grb7|14786|growth factor receptor bound protein 7	BC003295|Grb7|14786|growth factor receptor bound protein 7
mm9_v1_chr13_+_37917957_37918060	5.00901	bHLH_family.p2	BC080680|Rreb1|68750|ras responsive element binding protein 1
mm9_v1_chr9_+_114310181_114310275	5.00449	bHLH_family.p2	AK171593|Glb1|12091|galactosidase, beta 1	AK166473|Glb1|12091|galactosidase, beta 1	AK153218|Glb1|12091|galactosidase, beta 1	AK034049|Glb1|12091|galactosidase, beta 1	AK046107|Tmppe|100504715|transmembrane protein with metallophosphoesterase domain	AK034966|Glb1|12091|galactosidase, beta 1	AK076517|Glb1|12091|galactosidase, beta 1	AK171760|Glb1|12091|galactosidase, beta 1	AK042069|Glb1|12091|galactosidase, beta 1	M57734|Glb1|12091|galactosidase, beta 1	NM_009752|Glb1|12091|galactosidase, beta 1	AK048460|Glb1|12091|galactosidase, beta 1	AK167271|Glb1|12091|galactosidase, beta 1	BC028875|Glb1|12091|galactosidase, beta 1
mm9_v1_chr8_-_86222963_86223117	5.00405	bHLH_family.p2	AK134792|Pkn1|320795|protein kinase N1	BC052923|Pkn1|320795|protein kinase N1	NM_177262|Pkn1|320795|protein kinase N1	AK170556|Pkn1|320795|protein kinase N1	AK050643|Pkn1|320795|protein kinase N1
mm9_v1_chr7_+_134913327_134913502	5.00101	bHLH_family.p2	AK136955|Orai3|269999|ORAI calcium release-activated calcium modulator 3	NM_198424|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AK037138|Orai3|269999|ORAI calcium release-activated calcium modulator 3	BC061259|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AB271216|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AM712358|Orai3|269999|ORAI calcium release-activated calcium modulator 3
mm9_v1_chr5_+_120566489_120566582	5.00083	bHLH_family.p2	AK146493|Rbm19|74111|RNA binding motif protein 19	AK053511|Rbm19|74111|RNA binding motif protein 19	BC025619|Rbm19|74111|RNA binding motif protein 19	NM_028762|Rbm19|74111|RNA binding motif protein 19	AK167100|Rbm19|74111|RNA binding motif protein 19	BC034010|Rbm19|74111|RNA binding motif protein 19
mm9_v1_chr12_+_77356370_77356407	4.99915	bHLH_family.p2	AK042958|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK165951|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	BC008523|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK133848|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK159812|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr11_-_69734369_69734464	4.99666	bHLH_family.p2	AY129328|Eif5a|276770|eukaryotic translation initiation factor 5A	AY129329|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166592|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166594|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr11_+_69778998_69779009	4.99178	bHLH_family.p2	BC110485|Cldn7|53624|claudin 7	AK002924|Cldn7|53624|claudin 7	AK010558|Cldn7|53624|claudin 7	AK167250|Cldn7|53624|claudin 7	AK087296|Cldn7|53624|claudin 7	BC050007|Cldn7|53624|claudin 7
mm9_v1_chr15_-_97738692_97738754	4.99109	bHLH_family.p2	BC006716|Vdr|22337|vitamin D receptor	D31969|Vdr|22337|vitamin D receptor	AK154647|Vdr|22337|vitamin D receptor	AK030339|Vdr|22337|vitamin D receptor	NM_009504|Vdr|22337|vitamin D receptor	AK156789|Vdr|22337|vitamin D receptor
mm9_v1_chr17_-_56766191_56766343	4.99061	bHLH_family.p2	AY190302|Lonp1|74142|lon peptidase 1, mitochondrial	BC057365|Lonp1|74142|lon peptidase 1, mitochondrial	BC058735|Lonp1|74142|lon peptidase 1, mitochondrial	AK157474|Lonp1|74142|lon peptidase 1, mitochondrial	AK004820|Lonp1|74142|lon peptidase 1, mitochondrial	AK131910|Lonp1|74142|lon peptidase 1, mitochondrial	AK159302|Lonp1|74142|lon peptidase 1, mitochondrial	AK160071|Lonp1|74142|lon peptidase 1, mitochondrial	AK160076|Lonp1|74142|lon peptidase 1, mitochondrial	AK161983|Lonp1|74142|lon peptidase 1, mitochondrial	NM_028782|Lonp1|74142|lon peptidase 1, mitochondrial
mm9_v1_chr19_+_8810274_8810348	4.97797	bHLH_family.p2	AK145704|Wdr74|107071|WD repeat domain 74	AK077521|Wdr74|107071|WD repeat domain 74	BC019968|Wdr74|107071|WD repeat domain 74	NM_134139|Wdr74|107071|WD repeat domain 74
mm9_v1_chr17_-_26335980_26336160	4.96574	bHLH_family.p2	AK007743|Pdia2|69191|protein disulfide isomerase associated 2	BC116671|Pdia2|69191|protein disulfide isomerase associated 2	NM_001081070|Pdia2|69191|protein disulfide isomerase associated 2
mm9_v1_chr16_-_18812064_18812064	4.93735	bHLH_family.p2	AF081536|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	NM_009862|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)
mm9_v1_chr11_-_93747039_93747079	4.93129	bHLH_family.p2	BC119621|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	BC119622|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	AK167248|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	NM_001013375|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr7_-_16973112_16973224	4.92801	bHLH_family.p2	AK010313|Sae1|56459|SUMO1 activating enzyme subunit 1	AK090012|Sae1|56459|SUMO1 activating enzyme subunit 1	AK162789|Sae1|56459|SUMO1 activating enzyme subunit 1	AB024303|Sae1|56459|SUMO1 activating enzyme subunit 1	BC068164|Sae1|56459|SUMO1 activating enzyme subunit 1	NM_019748|Sae1|56459|SUMO1 activating enzyme subunit 1	AK087556|Sae1|56459|SUMO1 activating enzyme subunit 1	AK159672|Sae1|56459|SUMO1 activating enzyme subunit 1	AK011772|Sae1|56459|SUMO1 activating enzyme subunit 1	AK154139|Sae1|56459|SUMO1 activating enzyme subunit 1
mm9_v1_chr9_+_109778461_109778493	4.91524	bHLH_family.p2	BC046296|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	AK077609|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	U27323|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)
mm9_v1_chr15_+_73578455_73578455	4.91335	bHLH_family.p2	AK147489|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_008975|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr3_+_152058937_152059038	4.89124	bHLH_family.p2	NM_001080755|Zzz3|108946|zinc finger, ZZ domain containing 3	AK131150|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr13_+_37917906_37917945	4.88614	bHLH_family.p2	NM_026830|Rreb1|68750|ras responsive element binding protein 1	AK154980|Rreb1|68750|ras responsive element binding protein 1
mm9_v1_chr3_+_80840337_80840337	4.88023	bHLH_family.p2	AF266467|Pdgfc|54635|platelet-derived growth factor, C polypeptide	NM_019971|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr4_+_19935389_19935537	4.85941	bHLH_family.p2	BC026882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr5_+_123526279_123526440	4.85147	bHLH_family.p2	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr4_-_40216818_40216897	4.84691	bHLH_family.p2	AB072395|Topors|106021|topoisomerase I binding, arginine/serine-rich	BC019421|Topors|106021|topoisomerase I binding, arginine/serine-rich	BC037141|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK044564|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK143025|Topors|106021|topoisomerase I binding, arginine/serine-rich	AB104865|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK153743|Topors|106021|topoisomerase I binding, arginine/serine-rich	BC040797|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK134075|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK140250|Topors|106021|topoisomerase I binding, arginine/serine-rich	NM_134097|Topors|106021|topoisomerase I binding, arginine/serine-rich
mm9_v1_chr7_-_31758390_31758487	4.84591	bHLH_family.p2	AK167463|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_001164184|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_001164185|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_017405|Lsr|54135|lipolysis stimulated lipoprotein receptor
mm9_v1_chr6_+_52195241_52195300	4.83557	bHLH_family.p2	U20366|Hoxa11as|15397|HOXA11 antisense RNA (non-protein coding)
mm9_v1_chr1_-_79668530_79668546	4.82925	bHLH_family.p2	AK028013|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	BC054111|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	BC098237|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	NM_183027|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3
mm9_v1_chr14_+_121310342_121310481	4.82617	bHLH_family.p2	AK161668|Ipo5|70572|importin 5	NM_023579|Ipo5|70572|importin 5	AK079134|Ipo5|70572|importin 5	AK049422|Ipo5|70572|importin 5	AK169664|Ipo5|70572|importin 5	AK053681|Ipo5|70572|importin 5	AK017701|Ipo5|70572|importin 5	AK167303|Ipo5|70572|importin 5	AF294327|Ipo5|70572|importin 5	BC052392|Ipo5|70572|importin 5
mm9_v1_chr12_+_8778201_8778241	4.81595	bHLH_family.p2	NM_011519|Sdc1|20969|syndecan 1	BC010560|Sdc1|20969|syndecan 1	X15487|Sdc1|20969|syndecan 1	AK162092|Sdc1|20969|syndecan 1	AK132491|Sdc1|20969|syndecan 1
mm9_v1_chr17_+_29235731_29235767	4.8116	bHLH_family.p2	AK194916|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr8_+_113557763_113557896	4.80945	bHLH_family.p2	AK087291|Aars|234734|alanyl-tRNA synthetase	AK158139|Aars|234734|alanyl-tRNA synthetase	AK085725|Aars|234734|alanyl-tRNA synthetase	AY223875|Aars|234734|alanyl-tRNA synthetase	AK150227|Aars|234734|alanyl-tRNA synthetase	AK036738|Aars|234734|alanyl-tRNA synthetase	BC033273|Aars|234734|alanyl-tRNA synthetase	NM_146217|Aars|234734|alanyl-tRNA synthetase	AK183614|Aars|234734|alanyl-tRNA synthetase
mm9_v1_chr15_+_99803210_99803320	4.80637	bHLH_family.p2	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr11_-_100956699_100956725	4.8	bHLH_family.p2	FJ937967|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	AB000121|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	BC030169|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	NM_008949|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	AK133462|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	FJ937966|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm9_v1_chr13_-_94269673_94269706	4.79055	bHLH_family.p2	BC020052|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr11_-_45768992_45769003	4.78506	bHLH_family.p2	BC115560|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	BC115561|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	AK010876|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	NM_001080969|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm9_v1_chr7_+_135667095_135667183	4.78303	bHLH_family.p2	NM_013863|Bag3|29810|BCL2-associated athanogene 3	AB041583|Bag3|29810|BCL2-associated athanogene 3	AK171734|Bag3|29810|BCL2-associated athanogene 3	BC145765|Bag3|29810|BCL2-associated athanogene 3
mm9_v1_chr10_+_61111331_61111422	4.78204	bHLH_family.p2	AK020291|Ppa1|67895|pyrophosphatase (inorganic) 1	AK008575|Ppa1|67895|pyrophosphatase (inorganic) 1	AK033434|Ppa1|67895|pyrophosphatase (inorganic) 1	AK088397|Ppa1|67895|pyrophosphatase (inorganic) 1	NM_026438|Ppa1|67895|pyrophosphatase (inorganic) 1	AK151512|Ppa1|67895|pyrophosphatase (inorganic) 1	AK146300|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr11_-_17111582_17111598	4.76513	bHLH_family.p2	AK146152|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK168177|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	NM_025443|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr19_-_8860725_8860906	4.76269	bHLH_family.p2	BC028647|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK144881|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	BC020299|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_146092|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK077149|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_001177798|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr8_-_60131768_60131885	4.75809	bHLH_family.p2	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr2_+_118938549_118938606	4.74991	bHLH_family.p2	AK045050|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK011242|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK148165|Rad51|19361|RAD51 homolog (S. cerevisiae)	NM_011234|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK160282|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK151157|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK151177|Rad51|19361|RAD51 homolog (S. cerevisiae)	BC027384|Rad51|19361|RAD51 homolog (S. cerevisiae)	D13803|Rad51|19361|RAD51 homolog (S. cerevisiae)	D13473|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK076468|Rad51|19361|RAD51 homolog (S. cerevisiae)
mm9_v1_chr11_-_88725811_88725842	4.74903	bHLH_family.p2	BC065135|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr2_+_74535801_74535819	4.74574	bHLH_family.p2	NM_013555|Hoxd9|15438|homeobox D9
mm9_v1_chr6_-_83725683_83725774	4.74011	bHLH_family.p2	AK185442|Tex261|21766|testis expressed gene 261	AK201329|Tex261|21766|testis expressed gene 261	BC003802|Tex261|21766|testis expressed gene 261	X80426|Tex261|21766|testis expressed gene 261	X81058|Tex261|21766|testis expressed gene 261	AK149789|Tex261|21766|testis expressed gene 261
mm9_v1_chr18_-_38498564_38498663	4.73804	bHLH_family.p2	BC014800|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK084247|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF160355|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK080610|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK166069|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF088903|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	NM_011937|Gnpda1|26384|glucosamine-6-phosphate deaminase 1
mm9_v1_chr15_+_74551611_74551685	4.70804	bHLH_family.p2	BC047266|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene	NM_198607|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr7_+_108812560_108812681	4.69717	bHLH_family.p2	AK147772|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)
mm9_v1_chr3_-_105746659_105746682	4.6872	bHLH_family.p2	U29530|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr18_+_21119972_21120137	4.68023	bHLH_family.p2	AK016103|Rnf125|67664|ring finger protein 125	AB259692|Rnf125|67664|ring finger protein 125
mm9_v1_chr7_+_128061297_128061331	4.67384	bHLH_family.p2	AK012184|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK144721|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK146279|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK159723|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC037637|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC028924|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr3_+_96963195_96963222	4.67347	bHLH_family.p2	AF216223|Acp6|66659|acid phosphatase 6, lysophosphatidic
mm9_v1_chr11_-_93746982_93747028	4.66552	bHLH_family.p2	AK154637|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	AK032265|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr19_+_29175864_29175994	4.66513	bHLH_family.p2	AK009709|Rcl1|59028|RNA terminal phosphate cyclase-like 1	NM_021525|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK168153|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK012585|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK077751|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC053404|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC004574|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK153377|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AJ276895|Rcl1|59028|RNA terminal phosphate cyclase-like 1
mm9_v1_chr15_-_98711692_98711844	4.66442	bHLH_family.p2	AK007708|Rhebl1|69159|Ras homolog enriched in brain like 1	BC016521|Rhebl1|69159|Ras homolog enriched in brain like 1	AK135858|Rhebl1|69159|Ras homolog enriched in brain like 1	AY327413|Rhebl1|69159|Ras homolog enriched in brain like 1	NM_026967|Rhebl1|69159|Ras homolog enriched in brain like 1
mm9_v1_chr11_-_17111513_17111579	4.66429	bHLH_family.p2	AK165942|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK007324|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009146|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009896|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK017153|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	BC020037|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AF349950|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr5_+_53132872_53132957	4.65385	bHLH_family.p2	BC062144|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AF411321|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chr7_+_134356373_134356383	4.64675	bHLH_family.p2	U77943|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle
mm9_v1_chr17_+_26917976_26918037	4.64295	bHLH_family.p2	NM_172149|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	AK031208|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	AK170908|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	BC086888|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	AY547731|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1
mm9_v1_chr10_-_126467848_126467902	4.64164	bHLH_family.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr17_-_45736533_45736548	4.63763	bHLH_family.p2	AK050089|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr15_-_77599271_77599411	4.6323	bHLH_family.p2	BC006075|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC043703|Myh9|17886|myosin, heavy polypeptide 9, non-muscle
mm9_v1_chr4_+_15192892_15192977	4.62782	bHLH_family.p2	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr6_-_52108249_52108315	4.62756	bHLH_family.p2	BC138097|Hoxa1|15394|homeobox A1	BC138098|Hoxa1|15394|homeobox A1	M22115|Hoxa1|15394|homeobox A1	AK143943|Hoxa1|15394|homeobox A1	AK083575|Hoxa1|15394|homeobox A1	NM_010449|Hoxa1|15394|homeobox A1
mm9_v1_chr17_-_34764041_34764054	4.60865	bHLH_family.p2	BC013462|Ppt2|54397|palmitoyl-protein thioesterase 2	NM_019441|Ppt2|54397|palmitoyl-protein thioesterase 2
mm9_v1_chr4_+_99322989_99322989	4.60663	bHLH_family.p2	AF067421|Foxd3|15221|forkhead box D3	NM_010425|Foxd3|15221|forkhead box D3	U41047|Foxd3|15221|forkhead box D3
mm9_v1_chr1_-_72330767_72330887	4.60059	bHLH_family.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr3_-_115710131_115710328	4.59967	bHLH_family.p2	AF529196|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AF233322|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC050193|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC017136|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK075802|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK010008|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	NM_023214|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7
mm9_v1_chr5_+_110715337_110715402	4.58268	bHLH_family.p2	NM_011132|Pole|18973|polymerase (DNA directed), epsilon	AK165879|Pole|18973|polymerase (DNA directed), epsilon	AF123502|Pole|18973|polymerase (DNA directed), epsilon	AK141674|Pole|18973|polymerase (DNA directed), epsilon	BC048166|Pole|18973|polymerase (DNA directed), epsilon	BC063246|Pole|18973|polymerase (DNA directed), epsilon
mm9_v1_chr10_+_61111271_61111326	4.57534	bHLH_family.p2	AK145640|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr5_-_74927649_74927773	4.57336	bHLH_family.p2	AK088353|Scfd2|212986|Sec1 family domain containing 2	AK036637|Scfd2|212986|Sec1 family domain containing 2	AK047738|Scfd2|212986|Sec1 family domain containing 2	AK050673|Scfd2|212986|Sec1 family domain containing 2	AK054548|Scfd2|212986|Sec1 family domain containing 2	AK163028|Scfd2|212986|Sec1 family domain containing 2	AK089153|Scfd2|212986|Sec1 family domain containing 2	AK044408|Scfd2|212986|Sec1 family domain containing 2	AK143615|Scfd2|212986|Sec1 family domain containing 2	AK034000|Scfd2|212986|Sec1 family domain containing 2	BC042528|Scfd2|212986|Sec1 family domain containing 2	AK140246|Scfd2|212986|Sec1 family domain containing 2	AK153621|Scfd2|212986|Sec1 family domain containing 2	NM_001114660|Scfd2|212986|Sec1 family domain containing 2	NM_178672|Scfd2|212986|Sec1 family domain containing 2
mm9_v1_chr11_+_98799013_98799173	4.5714	bHLH_family.p2	S56656|Rara|19401|retinoic acid receptor, alpha	BC040383|Rara|19401|retinoic acid receptor, alpha	NM_001177302|Rara|19401|retinoic acid receptor, alpha	AK154623|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr10_-_126959397_126959444	4.55542	bHLH_family.p2	BC051396|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK012355|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK169192|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)
mm9_v1_chr11_-_95936914_95937007	4.53834	bHLH_family.p2	BC003854|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008191|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK009883|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_001161419|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011432|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008998|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011054|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK167884|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK010868|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_007506|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm9_v1_chr19_-_42055588_42055632	4.53002	bHLH_family.p2	BC018614|Mms19|72199|MMS19 (MET18 S. cerevisiae)	BC050817|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK036983|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AF319949|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK011754|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK078688|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK028317|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK030619|Mms19|72199|MMS19 (MET18 S. cerevisiae)	NM_028152|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK087633|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK010326|Mms19|72199|MMS19 (MET18 S. cerevisiae)
mm9_v1_chr11_+_88860710_88860807	4.52788	bHLH_family.p2	AK169562|Trim25|217069|tripartite motif-containing 25	NM_009546|Trim25|217069|tripartite motif-containing 25	AK154533|Trim25|217069|tripartite motif-containing 25	BC006908|Trim25|217069|tripartite motif-containing 25	BC034276|Trim25|217069|tripartite motif-containing 25	AK160898|Trim25|217069|tripartite motif-containing 25	AK172555|Trim25|217069|tripartite motif-containing 25	D63902|Trim25|217069|tripartite motif-containing 25
mm9_v1_chr6_-_83725776_83725818	4.52263	bHLH_family.p2	AK157834|Tex261|21766|testis expressed gene 261	NM_009357|Tex261|21766|testis expressed gene 261
mm9_v1_chr10_-_81063566_81063644	4.51898	bHLH_family.p2	BC023315|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)	AK135768|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)	AF145957|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)	NM_053254|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)
mm9_v1_chr7_+_108812146_108812327	4.51459	bHLH_family.p2	AK006072|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK138593|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK159314|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK154577|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK049768|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK028101|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK141383|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	U09874|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	BC048175|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	NM_009191|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK032421|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK145641|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)
mm9_v1_chr7_+_97278722_97279067	4.50581	bHLH_family.p2	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chrX_-_90877453_90877549	4.50543	bHLH_family.p2	AK139486|Pola1|18968|polymerase (DNA directed), alpha 1	AK037836|Pola1|18968|polymerase (DNA directed), alpha 1	D13543|Pola1|18968|polymerase (DNA directed), alpha 1	BC138047|Pola1|18968|polymerase (DNA directed), alpha 1	D17384|Pola1|18968|polymerase (DNA directed), alpha 1	NM_008892|Pola1|18968|polymerase (DNA directed), alpha 1
mm9_v1_chr5_+_31357245_31357300	4.49869	bHLH_family.p2	BC137856|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144972|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144973|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr12_-_80397239_80397289	4.49311	bHLH_family.p2	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chr10_-_126959446_126959510	4.48043	bHLH_family.p2	AK037339|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	BC004825|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK051207|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	NM_028230|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK162421|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)
mm9_v1_chr14_+_102053172_102053276	4.4734	bHLH_family.p2	AK050278|Uchl3|50933|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	NM_016723|Uchl3|50933|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	AB033370|Uchl3|50933|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	BC048481|Uchl3|50933|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	BC029242|Uchl3|50933|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	AF247358|Uchl3|50933|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
mm9_v1_chr11_+_105153956_105154033	4.45629	bHLH_family.p2	AK054150|Mrc2|17534|mannose receptor, C type 2	NM_008626|Mrc2|17534|mannose receptor, C type 2	AK028157|Mrc2|17534|mannose receptor, C type 2	U56734|Mrc2|17534|mannose receptor, C type 2	BC116642|Mrc2|17534|mannose receptor, C type 2
mm9_v1_chr14_-_52634206_52634316	4.45372	bHLH_family.p2	AK053445|Zfp219|69890|zinc finger protein 219
mm9_v1_chr13_+_23625779_23625779	4.45207	bHLH_family.p2	BC125011|Hist1h2af|319173|histone cluster 1, H2af	NM_175661|Hist1h2af|319173|histone cluster 1, H2af
mm9_v1_chr2_-_65962685_65962849	4.43746	bHLH_family.p2	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr11_+_53164267_53164268	4.42864	bHLH_family.p2	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr10_-_6373309_6373324	4.42841	bHLH_family.p2	BC058265|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr16_-_31081444_31081521	4.42678	bHLH_family.p2	BC031419|AI480653|268880|expressed sequence AI480653	AK166259|AI480653|268880|expressed sequence AI480653	AK154256|AI480653|268880|expressed sequence AI480653	NM_198626|AI480653|268880|expressed sequence AI480653
mm9_v1_chr7_+_87377748_87377824	4.41653	bHLH_family.p2	AK166345|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK143704|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK085577|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK086166|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	NM_178752|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK084531|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	BC037479|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene
mm9_v1_chr9_+_3532302_3532353	4.41486	bHLH_family.p2	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr2_-_75542552_75542719	4.40687	bHLH_family.p2	BC003340|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK144247|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK029360|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK142347|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	BC026943|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	NM_010902|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	U20532|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr10_+_68675404_68675423	4.40619	bHLH_family.p2	AK034826|Rhobtb1|69288|Rho-related BTB domain containing 1	NM_001081347|Rhobtb1|69288|Rho-related BTB domain containing 1	BC099973|Rhobtb1|69288|Rho-related BTB domain containing 1
mm9_v1_chr2_+_25227840_25227897	4.40365	bHLH_family.p2	NM_001081085|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK154143|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	BC070477|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK008577|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK164615|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK166625|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK077952|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene
mm9_v1_chr10_+_127759794_127759814	4.4036	bHLH_family.p2	AK179967|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr3_-_58329346_58329433	4.40137	bHLH_family.p2	AK178735|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK179107|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK185536|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK190535|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK194381|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK195463|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK209611|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr16_+_94085504_94085555	4.40043	bHLH_family.p2	NM_011377|Sim2|20465|single-minded homolog 2 (Drosophila)	D63383|Sim2|20465|single-minded homolog 2 (Drosophila)	D64135|Sim2|20465|single-minded homolog 2 (Drosophila)
mm9_v1_chr1_-_122161827_122161860	4.3987	bHLH_family.p2	AK003108|Steap3|68428|STEAP family member 3	AK028961|Steap3|68428|STEAP family member 3	AY029586|Steap3|68428|STEAP family member 3	BC027251|Steap3|68428|STEAP family member 3	BC037435|Steap3|68428|STEAP family member 3	NM_133186|Steap3|68428|STEAP family member 3	AK171237|Steap3|68428|STEAP family member 3
mm9_v1_chr19_-_4615460_4615508	4.39861	bHLH_family.p2	AK081560|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr8_+_87213179_87213195	4.39357	bHLH_family.p2	AK040715|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK078395|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK084775|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK159467|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK170412|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK155251|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK171002|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	AK139463|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr4_+_118293403_118293498	4.39178	bHLH_family.p2	NM_026932|Ebna1bp2|69072|EBNA1 binding protein 2	BC054723|Ebna1bp2|69072|EBNA1 binding protein 2	AK007491|Ebna1bp2|69072|EBNA1 binding protein 2	AK134732|Ebna1bp2|69072|EBNA1 binding protein 2	AK167070|Ebna1bp2|69072|EBNA1 binding protein 2	BC062876|Ebna1bp2|69072|EBNA1 binding protein 2	AK168269|Ebna1bp2|69072|EBNA1 binding protein 2
mm9_v1_chr3_-_86724093_86724302	4.38986	bHLH_family.p2	AY968049|Dclk2|70762|doublecortin-like kinase 2	AY968050|Dclk2|70762|doublecortin-like kinase 2	AY968051|Dclk2|70762|doublecortin-like kinase 2	BC060192|Dclk2|70762|doublecortin-like kinase 2	AB198721|Dclk2|70762|doublecortin-like kinase 2	AK049179|Dclk2|70762|doublecortin-like kinase 2	AK049126|Dclk2|70762|doublecortin-like kinase 2	AK082633|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chr9_-_88376937_88377419	4.38983	bHLH_family.p2	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr8_-_125222837_125223008	4.3869	bHLH_family.p2	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr3_+_138190223_138190257	4.3862	bHLH_family.p2	AK167097|Eif4e|13684|eukaryotic translation initiation factor 4E	M61731|Eif4e|13684|eukaryotic translation initiation factor 4E	AK082867|Eif4e|13684|eukaryotic translation initiation factor 4E	AK146757|Eif4e|13684|eukaryotic translation initiation factor 4E	BC010759|Eif4e|13684|eukaryotic translation initiation factor 4E	BC085087|Eif4e|13684|eukaryotic translation initiation factor 4E
mm9_v1_chr11_-_93817153_93817305	4.38569	bHLH_family.p2	X68193|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK169120|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	BC086893|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK012447|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK150419|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in
mm9_v1_chr18_-_35114004_35114004	4.38391	bHLH_family.p2	BC052727|Hspa9|15526|heat shock protein 9	BC057343|Hspa9|15526|heat shock protein 9	NM_010481|Hspa9|15526|heat shock protein 9
mm9_v1_chr1_-_64784316_64784324	4.37384	bHLH_family.p2	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr18_-_35114000_35114003	4.36292	bHLH_family.p2	AK165958|Hspa9|15526|heat shock protein 9
mm9_v1_chr11_-_93816916_93817051	4.36203	bHLH_family.p2	EF437324|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK151262|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	BC086892|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	NM_001077529|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in
mm9_v1_chr2_-_33286793_33286890	4.35911	bHLH_family.p2	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chrX_+_136991190_136991343	4.35795	bHLH_family.p2	BC054772|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1	AB025048|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1	AK168036|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1	AK185462|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1
mm9_v1_chr1_-_191746072_191746205	4.35273	bHLH_family.p2	AK197062|Smyd2|226830|SET and MYND domain containing 2	AK204951|Smyd2|226830|SET and MYND domain containing 2	AK164053|Smyd2|226830|SET and MYND domain containing 2	BC023119|Smyd2|226830|SET and MYND domain containing 2	NM_026796|Smyd2|226830|SET and MYND domain containing 2	AK145261|Smyd2|226830|SET and MYND domain containing 2	AK150857|Smyd2|226830|SET and MYND domain containing 2
mm9_v1_chr15_+_100058249_100058291	4.34338	bHLH_family.p2	AK144511|Atf1|11908|activating transcription factor 1	NM_007497|Atf1|11908|activating transcription factor 1
mm9_v1_chr11_-_50139023_50139176	4.334	bHLH_family.p2	BC012408|Canx|12330|calnexin	BC040244|Canx|12330|calnexin	AK028279|Canx|12330|calnexin	AK165508|Canx|12330|calnexin	AK084175|Canx|12330|calnexin	AK171868|Canx|12330|calnexin	AK159298|Canx|12330|calnexin	AK166649|Canx|12330|calnexin	NM_001110499|Canx|12330|calnexin	NM_001110500|Canx|12330|calnexin	NM_007597|Canx|12330|calnexin
mm9_v1_chr11_-_99496366_99496397	4.33207	bHLH_family.p2	BC140967|Krtap4-2|68673|keratin associated protein 4-2	AK004055|Krtap4-2|68673|keratin associated protein 4-2	NM_026807|Krtap4-2|68673|keratin associated protein 4-2
mm9_v1_chr7_+_20101391_20101436	4.32545	bHLH_family.p2	
mm9_v1_chr7_+_57033711_57033769	4.32283	bHLH_family.p2	AK010534|Prmt3|71974|protein arginine N-methyltransferase 3	AK031738|Prmt3|71974|protein arginine N-methyltransferase 3	NM_133740|Prmt3|71974|protein arginine N-methyltransferase 3	AK155236|Prmt3|71974|protein arginine N-methyltransferase 3	AK008118|Prmt3|71974|protein arginine N-methyltransferase 3	AK049836|Prmt3|71974|protein arginine N-methyltransferase 3	BC050775|Prmt3|71974|protein arginine N-methyltransferase 3	AK086646|Prmt3|71974|protein arginine N-methyltransferase 3
mm9_v1_chr3_-_104764503_104764638	4.32223	bHLH_family.p2	AF070988|Wnt2b|22414|wingless related MMTV integration site 2b	BC119276|Wnt2b|22414|wingless related MMTV integration site 2b	BC119278|Wnt2b|22414|wingless related MMTV integration site 2b	AK035653|Wnt2b|22414|wingless related MMTV integration site 2b	NM_009520|Wnt2b|22414|wingless related MMTV integration site 2b
mm9_v1_chr3_+_89049813_89049887	4.31763	bHLH_family.p2	BC043030|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr6_+_115742321_115742546	4.31411	bHLH_family.p2	AK170420|Cand2|67088|cullin-associated and neddylation-dissociated 2 (putative)
mm9_v1_chr17_-_48061577_48061752	4.31199	bHLH_family.p2	BC057110|Foxp4|74123|forkhead box P4	NM_001110824|Foxp4|74123|forkhead box P4	NM_001110825|Foxp4|74123|forkhead box P4	NM_028767|Foxp4|74123|forkhead box P4
mm9_v1_chr5_-_111209468_111209636	4.30887	bHLH_family.p2	BC021446|Pus1|56361|pseudouridine synthase 1	BC034359|Pus1|56361|pseudouridine synthase 1	AB041563|Pus1|56361|pseudouridine synthase 1	AK089258|Pus1|56361|pseudouridine synthase 1	NM_001025561|Pus1|56361|pseudouridine synthase 1	NM_019700|Pus1|56361|pseudouridine synthase 1	NM_001025562|Pus1|56361|pseudouridine synthase 1	AK161521|Pus1|56361|pseudouridine synthase 1
mm9_v1_chr11_-_99464621_99464621	4.30487	bHLH_family.p2	NM_001127354|Gm11938|100041412|predicted gene 11938
mm9_v1_chr9_+_108241754_108241796	4.30234	bHLH_family.p2	AK191208|Gpx1|14775|glutathione peroxidase 1	AK191913|Gpx1|14775|glutathione peroxidase 1	AK200043|Gpx1|14775|glutathione peroxidase 1	AK201721|Gpx1|14775|glutathione peroxidase 1	AK202661|Gpx1|14775|glutathione peroxidase 1	AK205185|Gpx1|14775|glutathione peroxidase 1
mm9_v1_chr10_+_61111426_61111478	4.29306	bHLH_family.p2	BC010468|Ppa1|67895|pyrophosphatase (inorganic) 1	CT010203|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr9_-_113563906_113564041	4.27872	bHLH_family.p2	AK199870|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr11_+_82594636_82594745	4.27651	bHLH_family.p2	NM_010716|Lig3|16882|ligase III, DNA, ATP-dependent	BC026143|Lig3|16882|ligase III, DNA, ATP-dependent	AK031540|Lig3|16882|ligase III, DNA, ATP-dependent	AK156018|Lig3|16882|ligase III, DNA, ATP-dependent	AK010719|Lig3|16882|ligase III, DNA, ATP-dependent	AK150644|Lig3|16882|ligase III, DNA, ATP-dependent	AK167363|Lig3|16882|ligase III, DNA, ATP-dependent	BC049240|Lig3|16882|ligase III, DNA, ATP-dependent	BC083500|Lig3|16882|ligase III, DNA, ATP-dependent	AK143531|Lig3|16882|ligase III, DNA, ATP-dependent
mm9_v1_chr11_+_101107691_101107706	4.27632	bHLH_family.p2	BC036348|Vps25|28084|vacuolar protein sorting 25 (yeast)
mm9_v1_chr16_+_16303044_16303113	4.27515	bHLH_family.p2	AK083653|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	AK008774|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	AK138504|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	BC060295|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	NM_198246|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr7_+_86040793_86040943	4.27352	bHLH_family.p2	AK031972|Aen|68048|apoptosis enhancing nuclease	NM_001162939|Aen|68048|apoptosis enhancing nuclease	NM_026531|Aen|68048|apoptosis enhancing nuclease	AK165708|Aen|68048|apoptosis enhancing nuclease	AK012555|Aen|68048|apoptosis enhancing nuclease	AK090056|Aen|68048|apoptosis enhancing nuclease	AK166806|Aen|68048|apoptosis enhancing nuclease	AK167042|Aen|68048|apoptosis enhancing nuclease	AK076421|Aen|68048|apoptosis enhancing nuclease	AK167658|Aen|68048|apoptosis enhancing nuclease	AK017644|Aen|68048|apoptosis enhancing nuclease	AK089090|Aen|68048|apoptosis enhancing nuclease	BC022614|Aen|68048|apoptosis enhancing nuclease
mm9_v1_chr3_-_142544883_142544984	4.2639	bHLH_family.p2	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr11_-_97643718_97643767	4.26272	bHLH_family.p2	NM_022891|Rpl23|65019|ribosomal protein L23
mm9_v1_chr13_+_109106530_109106573	4.26266	bHLH_family.p2	NM_178683|Depdc1b|218581|DEP domain containing 1B	AK077676|Depdc1b|218581|DEP domain containing 1B	BC152330|Depdc1b|218581|DEP domain containing 1B	BC152331|Depdc1b|218581|DEP domain containing 1B	AK083480|Depdc1b|218581|DEP domain containing 1B	AK036550|Depdc1b|218581|DEP domain containing 1B	AK043283|Depdc1b|218581|DEP domain containing 1B
mm9_v1_chr15_+_80778910_80778973	4.26022	bHLH_family.p2	AK171725|Adsl|11564|adenylosuccinate lyase	BC020187|Adsl|11564|adenylosuccinate lyase	U20225|Adsl|11564|adenylosuccinate lyase	AK049372|Adsl|11564|adenylosuccinate lyase	AK051111|Adsl|11564|adenylosuccinate lyase	AK152092|Adsl|11564|adenylosuccinate lyase	NM_009634|Adsl|11564|adenylosuccinate lyase	AK166019|Adsl|11564|adenylosuccinate lyase	AK168906|Adsl|11564|adenylosuccinate lyase	AK170216|Adsl|11564|adenylosuccinate lyase
mm9_v1_chr17_-_56856326_56856399	4.25963	bHLH_family.p2	BC026472|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	NM_178926|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	AK089265|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein
mm9_v1_chr15_+_102751533_102751620	4.23851	bHLH_family.p2	AY349616|Hoxc13|15422|homeobox C13	AF193796|Hoxc13|15422|homeobox C13	NM_010464|Hoxc13|15422|homeobox C13
mm9_v1_chr17_+_35035395_35035464	4.23679	bHLH_family.p2	BC058357|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2	AB077209|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2	NM_147151|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2
mm9_v1_chr8_+_96738448_96738479	4.22803	bHLH_family.p2	AK169693|Nup93|71805|nucleoporin 93
mm9_v1_chr18_-_35114005_35114028	4.22529	bHLH_family.p2	AK133501|Hspa9|15526|heat shock protein 9	AK159791|Hspa9|15526|heat shock protein 9	AK161587|Hspa9|15526|heat shock protein 9
mm9_v1_chr18_-_35113995_35113999	4.2226	bHLH_family.p2	AK030299|Hspa9|15526|heat shock protein 9	AK145965|Hspa9|15526|heat shock protein 9	AK167856|Hspa9|15526|heat shock protein 9
mm9_v1_chr3_+_51219882_51219968	4.21966	bHLH_family.p2	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr11_+_98798970_98799011	4.21441	bHLH_family.p2	X56572|Rara|19401|retinoic acid receptor, alpha	NM_009024|Rara|19401|retinoic acid receptor, alpha	BC010216|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr11_+_82724754_82724832	4.21043	bHLH_family.p2	NM_178680|Unc45b|217012|unc-45 homolog B (C. elegans)	AK084418|Unc45b|217012|unc-45 homolog B (C. elegans)	AK168968|Unc45b|217012|unc-45 homolog B (C. elegans)	AK081821|Unc45b|217012|unc-45 homolog B (C. elegans)	AK169274|Unc45b|217012|unc-45 homolog B (C. elegans)	AK052294|Unc45b|217012|unc-45 homolog B (C. elegans)	BC084585|Unc45b|217012|unc-45 homolog B (C. elegans)
mm9_v1_chr11_-_93817311_93817324	4.19532	bHLH_family.p2	NM_008705|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in
mm9_v1_chr19_+_37624879_37624965	4.19024	bHLH_family.p2	AK151524|Exoc6|107371|exocyst complex component 6	AK151838|Exoc6|107371|exocyst complex component 6	NM_175353|Exoc6|107371|exocyst complex component 6	AK082881|Exoc6|107371|exocyst complex component 6	BC026859|Exoc6|107371|exocyst complex component 6
mm9_v1_chr18_+_14864659_14864697	4.17685	bHLH_family.p2	AK010717|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	NM_001163609|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116990|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116992|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144771|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144772|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8
mm9_v1_chr4_-_62180914_62181170	4.17658	bHLH_family.p2	BC018236|Alad|17025|aminolevulinate, delta-, dehydratase	AK167673|Alad|17025|aminolevulinate, delta-, dehydratase	AK002300|Alad|17025|aminolevulinate, delta-, dehydratase	AK032908|Alad|17025|aminolevulinate, delta-, dehydratase	AK168119|Alad|17025|aminolevulinate, delta-, dehydratase	AK168132|Alad|17025|aminolevulinate, delta-, dehydratase	BC055930|Alad|17025|aminolevulinate, delta-, dehydratase	NM_008525|Alad|17025|aminolevulinate, delta-, dehydratase
mm9_v1_chr4_-_119094957_119095024	4.17617	bHLH_family.p2	BC021894|Ppcs|106564|phosphopantothenoylcysteine synthetase	AK006290|Ppcs|106564|phosphopantothenoylcysteine synthetase	AK018256|Ppcs|106564|phosphopantothenoylcysteine synthetase	AK159952|Ppcs|106564|phosphopantothenoylcysteine synthetase	NM_026494|Ppcs|106564|phosphopantothenoylcysteine synthetase
mm9_v1_chr11_-_116713532_116713613	4.17539	bHLH_family.p2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr3_+_96962930_96963018	4.16073	bHLH_family.p2	BC047276|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK089736|Acp6|66659|acid phosphatase 6, lysophosphatidic
mm9_v1_chr9_+_108849655_108849724	4.16008	bHLH_family.p2	AK178594|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK183917|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK189225|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK212551|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK214273|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK215619|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr2_-_126701791_126701996	4.15953	bHLH_family.p2	BC145122|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	BC150709|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AF376052|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK162483|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK014698|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AF149013|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AY032951|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK052823|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	NM_001164325|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	NM_021450|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7
mm9_v1_chr15_+_74552040_74552053	4.15663	bHLH_family.p2	AK019809|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr8_+_96738490_96738507	4.15642	bHLH_family.p2	AK010450|Nup93|71805|nucleoporin 93	AK167105|Nup93|71805|nucleoporin 93	AK028864|Nup93|71805|nucleoporin 93	NM_172410|Nup93|71805|nucleoporin 93	BC023140|Nup93|71805|nucleoporin 93
mm9_v1_chr11_+_120353150_120353163	4.15288	bHLH_family.p2	AK151645|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	NM_013770|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
mm9_v1_chr18_+_32996878_32997001	4.14736	bHLH_family.p2	AK156822|Wdr36|225348|WD repeat domain 36	NM_001110015|Wdr36|225348|WD repeat domain 36	NM_001110016|Wdr36|225348|WD repeat domain 36	NM_144863|Wdr36|225348|WD repeat domain 36	AK045396|Wdr36|225348|WD repeat domain 36	BC022132|Wdr36|225348|WD repeat domain 36	BC094453|Wdr36|225348|WD repeat domain 36	AK171683|Wdr36|225348|WD repeat domain 36	AK077545|Wdr36|225348|WD repeat domain 36	AK172377|Wdr36|225348|WD repeat domain 36	AK140019|Wdr36|225348|WD repeat domain 36	AK172054|Wdr36|225348|WD repeat domain 36	AK041763|Wdr36|225348|WD repeat domain 36	BC025809|Wdr36|225348|WD repeat domain 36	AK155965|Wdr36|225348|WD repeat domain 36
mm9_v1_chr16_+_35770431_35770480	4.1461	bHLH_family.p2	AK089941|Hspbap1|66667|Hspb associated protein 1	NM_175111|Hspbap1|66667|Hspb associated protein 1
mm9_v1_chr15_+_84753817_84753857	4.14199	bHLH_family.p2	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr16_-_22163264_22163371	4.13389	bHLH_family.p2	NM_183029|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2
mm9_v1_chrX_-_163820597_163820686	4.12849	bHLH_family.p2	AK019169|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK215156|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	BC024942|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK045007|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	NM_026662|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK029690|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK012819|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2
mm9_v1_chr15_-_76369126_76369196	4.12394	bHLH_family.p2	BC044784|Fbxl6|30840|F-box and leucine-rich repeat protein 6	BC054377|Fbxl6|30840|F-box and leucine-rich repeat protein 6	BC011485|Fbxl6|30840|F-box and leucine-rich repeat protein 6	BC026818|Fbxl6|30840|F-box and leucine-rich repeat protein 6	AB041571|Fbxl6|30840|F-box and leucine-rich repeat protein 6	AF176522|Fbxl6|30840|F-box and leucine-rich repeat protein 6	AK052585|Fbxl6|30840|F-box and leucine-rich repeat protein 6	AK040458|Fbxl6|30840|F-box and leucine-rich repeat protein 6	NM_013909|Fbxl6|30840|F-box and leucine-rich repeat protein 6
mm9_v1_chr10_-_61949345_61949552	4.12061	bHLH_family.p2	AK028096|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_001113355|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK086851|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK150244|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK151360|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC007148|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK149859|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC058236|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK147989|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK152424|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK165853|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	S41204|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK159783|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK167592|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168537|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168213|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_133672|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)
mm9_v1_chr3_+_89195758_89195785	4.09797	bHLH_family.p2	
mm9_v1_chr1_+_9535477_9535591	4.07995	bHLH_family.p2	AK142041|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	NM_021511|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	BC003481|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AB041589|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK122207|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	BC055925|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK017683|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK010178|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK019913|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK019257|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm9_v1_chr8_-_44226818_44226839	4.06597	bHLH_family.p2	BC141202|Triml1|244448|tripartite motif family-like 1	BC145531|Triml1|244448|tripartite motif family-like 1	AK077092|Triml1|244448|tripartite motif family-like 1	NM_177742|Triml1|244448|tripartite motif family-like 1
mm9_v1_chr7_-_134852110_134852201	4.05872	bHLH_family.p2	Y11905|Bcl7c|12055|B-cell CLL/lymphoma 7C	BC058530|Bcl7c|12055|B-cell CLL/lymphoma 7C	AK131935|Bcl7c|12055|B-cell CLL/lymphoma 7C
mm9_v1_chr11_+_102297953_102298100	4.05431	bHLH_family.p2	
mm9_v1_chr11_+_85646116_85646116	4.05276	bHLH_family.p2	NM_009324|Tbx2|21385|T-box 2
mm9_v1_chr5_-_122268520_122268549	4.04375	bHLH_family.p2	AK188457|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chr11_+_120534286_120534318	4.04202	bHLH_family.p2	NM_026877|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm9_v1_chr13_+_5860701_5860744	4.04021	bHLH_family.p2	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr8_+_72657386_72657401	4.03223	bHLH_family.p2	
mm9_v1_chr9_+_72655019_72655080	4.03151	bHLH_family.p2	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr14_-_21483775_21483797	4.01977	bHLH_family.p2	AK084541|Synpo2l|68760|synaptopodin 2-like
mm9_v1_chr2_+_143741050_143741074	4.01271	bHLH_family.p2	NM_019771|Dstn|56431|destrin
mm9_v1_chr5_+_77380332_77380435	4.0078	bHLH_family.p2	AK146722|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	BC052691|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	NM_025939|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr3_+_145239169_145239285	4.00487	bHLH_family.p2	NM_001081094|Znhit6|229937|zinc finger, HIT type 6	AK167835|Znhit6|229937|zinc finger, HIT type 6	AK148729|Znhit6|229937|zinc finger, HIT type 6	AK168844|Znhit6|229937|zinc finger, HIT type 6	AK010555|Znhit6|229937|zinc finger, HIT type 6	BC147498|Znhit6|229937|zinc finger, HIT type 6	BC150966|Znhit6|229937|zinc finger, HIT type 6	BC150967|Znhit6|229937|zinc finger, HIT type 6	BC151198|Znhit6|229937|zinc finger, HIT type 6
mm9_v1_chr17_+_45704145_45704512	3.99275	bHLH_family.p2	AK211181|Slc35b2|73836|solute carrier family 35, member B2	AK212100|Slc35b2|73836|solute carrier family 35, member B2	AK207266|Slc35b2|73836|solute carrier family 35, member B2	AK212091|Slc35b2|73836|solute carrier family 35, member B2	AK214463|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr10_+_87922331_87922408	3.97857	bHLH_family.p2	BC132079|Sycp3|20962|synaptonemal complex protein 3	BC138509|Sycp3|20962|synaptonemal complex protein 3	NM_011517|Sycp3|20962|synaptonemal complex protein 3	Y08485|Sycp3|20962|synaptonemal complex protein 3	AK131949|Sycp3|20962|synaptonemal complex protein 3	BC048483|Sycp3|20962|synaptonemal complex protein 3	BC089540|Sycp3|20962|synaptonemal complex protein 3	BC099552|Sycp3|20962|synaptonemal complex protein 3
mm9_v1_chr4_-_45120942_45121003	3.97626	bHLH_family.p2	AK003822|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001099675|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001134646|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm9_v1_chr15_-_75739695_75739776	3.97418	bHLH_family.p2	BC082536|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	BC079855|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	BC013059|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK017616|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK044934|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK054335|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AF304351|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK017796|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK010347|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	NM_023240|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	NM_029663|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm9_v1_chr18_-_35113903_35113993	3.97072	bHLH_family.p2	AK002634|Hspa9|15526|heat shock protein 9	AK004946|Hspa9|15526|heat shock protein 9	AK137109|Hspa9|15526|heat shock protein 9	D17556|Hspa9|15526|heat shock protein 9	L06896|Hspa9|15526|heat shock protein 9	D11089|Hspa9|15526|heat shock protein 9
mm9_v1_chr4_-_82531027_82531054	3.96462	bHLH_family.p2	AF035579|Cer1|12622|cerberus 1 homolog (Xenopus laevis)	BC145993|Cer1|12622|cerberus 1 homolog (Xenopus laevis)	BC132431|Cer1|12622|cerberus 1 homolog (Xenopus laevis)	AF031896|Cer1|12622|cerberus 1 homolog (Xenopus laevis)	NM_009887|Cer1|12622|cerberus 1 homolog (Xenopus laevis)
mm9_v1_chr5_+_147889105_147889239	3.96374	bHLH_family.p2	D86609|Polr1d|20018|polymerase (RNA) I polypeptide D	NM_009087|Polr1d|20018|polymerase (RNA) I polypeptide D	BC087884|Polr1d|20018|polymerase (RNA) I polypeptide D	AK003353|Polr1d|20018|polymerase (RNA) I polypeptide D	NM_181730|Polr1d|20018|polymerase (RNA) I polypeptide D	AK154241|Polr1d|20018|polymerase (RNA) I polypeptide D	AK002811|Polr1d|20018|polymerase (RNA) I polypeptide D	BC024394|Polr1d|20018|polymerase (RNA) I polypeptide D	BC002025|Polr1d|20018|polymerase (RNA) I polypeptide D	AK185352|Polr1d|20018|polymerase (RNA) I polypeptide D
mm9_v1_chr10_-_94878117_94878117	3.95982	bHLH_family.p2	NM_001168656|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr18_-_78006524_78006535	3.95542	bHLH_family.p2	AK147599|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr11_-_82721859_82721896	3.9501	bHLH_family.p2	BC018399|Nle1|217011|notchless homolog 1 (Drosophila)	BC035421|Nle1|217011|notchless homolog 1 (Drosophila)	AK170853|Nle1|217011|notchless homolog 1 (Drosophila)	AK141230|Nle1|217011|notchless homolog 1 (Drosophila)	NM_145431|Nle1|217011|notchless homolog 1 (Drosophila)
mm9_v1_chr18_-_78006491_78006518	3.94804	bHLH_family.p2	AK076912|Haus1|225745|HAUS augmin-like complex, subunit 1	AK146923|Haus1|225745|HAUS augmin-like complex, subunit 1	BC024400|Haus1|225745|HAUS augmin-like complex, subunit 1	NM_146089|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr15_+_84753875_84753883	3.943	bHLH_family.p2	AK133371|Nup50|18141|nucleoporin 50
mm9_v1_chr7_-_26443700_26443803	3.93807	bHLH_family.p2	L47335|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide	AK002435|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide	AK154734|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide	NM_007533|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide
mm9_v1_chr11_-_97643692_97643709	3.93737	bHLH_family.p2	AK012694|Rpl23|65019|ribosomal protein L23	AK018730|Rpl23|65019|ribosomal protein L23	AK150671|Rpl23|65019|ribosomal protein L23	AK002579|Rpl23|65019|ribosomal protein L23	AK010680|Rpl23|65019|ribosomal protein L23
mm9_v1_chr19_-_44476302_44476309	3.93544	bHLH_family.p2	AK135642|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr10_+_69559860_69560052	3.93161	bHLH_family.p2	NM_001111121|Ccdc6|76551|coiled-coil domain containing 6
mm9_v1_chrX_-_34404128_34404240	3.92847	bHLH_family.p2	BC085302|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	BC051144|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK032304|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK036910|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK084447|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK044209|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK034943|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK141615|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK035825|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK021190|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	NM_029951|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene
mm9_v1_chr12_+_113886150_113886156	3.92301	bHLH_family.p2	AK194303|Siva1|30954|SIVA1, apoptosis-inducing factor	AK207814|Siva1|30954|SIVA1, apoptosis-inducing factor	AK213981|Siva1|30954|SIVA1, apoptosis-inducing factor	AK218153|Siva1|30954|SIVA1, apoptosis-inducing factor
mm9_v1_chr1_-_66864088_66864173	3.91006	bHLH_family.p2	AK172645|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene	AK220534|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene	AK145440|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene	NM_001122738|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene	NM_177645|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene
mm9_v1_chr8_+_108660959_108660982	3.90944	bHLH_family.p2	AK007545|1810019D21Rik|69771|RIKEN cDNA 1810019D21 gene
mm9_v1_chr7_+_107307748_107307807	3.8966	bHLH_family.p2	AK011925|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115472|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	NM_026010|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115473|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK008917|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK013127|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)
mm9_v1_chr11_+_100931369_100931476	3.89631	bHLH_family.p2	AK143546|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	NM_013792|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK170758|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK158045|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK164125|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	BC055733|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	U85247|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
mm9_v1_chr8_+_54597026_54597158	3.89495	bHLH_family.p2	NM_001005847|Aga|11593|aspartylglucosaminidase	BC132227|Aga|11593|aspartylglucosaminidase	BC132229|Aga|11593|aspartylglucosaminidase	BC145297|Aga|11593|aspartylglucosaminidase	S81393|Aga|11593|aspartylglucosaminidase	BC048230|Aga|11593|aspartylglucosaminidase
mm9_v1_chr11_-_69734574_69734597	3.89481	bHLH_family.p2	NM_001166596|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr9_-_21564742_21564759	3.89357	bHLH_family.p2	AK153185|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK011728|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK167877|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr5_-_31210160_31210170	3.88646	bHLH_family.p2	NM_024460|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)
mm9_v1_chr7_+_52895346_52895362	3.88251	bHLH_family.p2	AK017382|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator	NM_172418|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator	DQ534901|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator
mm9_v1_chr8_-_73290529_73290564	3.88248	bHLH_family.p2	AF309649|Ifi30|65972|interferon gamma inducible protein 30	BC054852|Ifi30|65972|interferon gamma inducible protein 30	AF290973|Ifi30|65972|interferon gamma inducible protein 30	AK156914|Ifi30|65972|interferon gamma inducible protein 30	AK077725|Ifi30|65972|interferon gamma inducible protein 30	NM_023065|Ifi30|65972|interferon gamma inducible protein 30
mm9_v1_chr10_-_6373388_6373465	3.87784	bHLH_family.p2	AK075931|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK160025|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK036284|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK028211|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK038579|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170785|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170786|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_172308|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr9_+_108849434_108849501	3.87652	bHLH_family.p2	BC018405|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr16_-_96349292_96349333	3.87578	bHLH_family.p2	NM_008251|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr2_+_112399838_112399838	3.87539	bHLH_family.p2	NM_001165935|Aven|74268|apoptosis, caspase activation inhibitor
mm9_v1_chr11_+_101177524_101177765	3.86419	bHLH_family.p2	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr10_-_127962914_127963016	3.86417	bHLH_family.p2	BC011482|Esyt1|23943|extended synaptotagmin-like protein 1	NM_011843|Esyt1|23943|extended synaptotagmin-like protein 1	AK044656|Esyt1|23943|extended synaptotagmin-like protein 1	AK088421|Esyt1|23943|extended synaptotagmin-like protein 1	AK080094|Esyt1|23943|extended synaptotagmin-like protein 1	AK152482|Esyt1|23943|extended synaptotagmin-like protein 1	AK152554|Esyt1|23943|extended synaptotagmin-like protein 1
mm9_v1_chr11_-_97643570_97643598	3.85929	bHLH_family.p2	AK139855|Rpl23|65019|ribosomal protein L23
mm9_v1_chr16_+_87553574_87553800	3.85889	bHLH_family.p2	AY033899|ORF63|224419|open reading frame 63	NM_144854|ORF63|224419|open reading frame 63	AK041664|ORF63|224419|open reading frame 63	BC115624|ORF63|224419|open reading frame 63	BC115625|ORF63|224419|open reading frame 63
mm9_v1_chr13_-_120197722_120197851	3.85814	bHLH_family.p2	AK050478|Nnt|18115|nicotinamide nucleotide transhydrogenase	Z49204|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK052061|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK033282|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK040460|Nnt|18115|nicotinamide nucleotide transhydrogenase	BC008518|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK129006|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK084546|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK084604|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK087064|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK088044|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK159694|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK052234|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK054332|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK083413|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK085903|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK168736|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK090115|Nnt|18115|nicotinamide nucleotide transhydrogenase	NM_008710|Nnt|18115|nicotinamide nucleotide transhydrogenase
mm9_v1_chr1_-_75138905_75138941	3.85711	bHLH_family.p2	BC028815|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK029090|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	NM_026977|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene
mm9_v1_chr9_-_48288557_48288687	3.85491	bHLH_family.p2	AK178028|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK209299|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK212689|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK171619|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK150287|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	BC003445|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr5_+_147760198_147760451	3.84826	bHLH_family.p2	NM_025652|Gtf3a|66596|general transcription factor III A	AF391799|Gtf3a|66596|general transcription factor III A	AK008247|Gtf3a|66596|general transcription factor III A	AK011845|Gtf3a|66596|general transcription factor III A	AK143627|Gtf3a|66596|general transcription factor III A	AK012797|Gtf3a|66596|general transcription factor III A	AK017234|Gtf3a|66596|general transcription factor III A	AK183221|Gtf3a|66596|general transcription factor III A
mm9_v1_chr8_-_73905790_73905902	3.8464	bHLH_family.p2	AK131941|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	NM_010150|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr2_-_155649645_155649731	3.84187	bHLH_family.p2	AK212176|Eif6|16418|eukaryotic translation initiation factor 6	AK181580|Eif6|16418|eukaryotic translation initiation factor 6	AK177151|Eif6|16418|eukaryotic translation initiation factor 6	Y11460|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr11_+_51433236_51433386	3.84187	bHLH_family.p2	AK008766|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK019134|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	NM_026631|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	BC024944|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK007340|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK193298|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK199159|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)
mm9_v1_chr1_-_91827726_91827753	3.83892	bHLH_family.p2	L39770|Gbx2|14472|gastrulation brain homeobox 2	NM_010262|Gbx2|14472|gastrulation brain homeobox 2	Z48800|Gbx2|14472|gastrulation brain homeobox 2	BC050989|Gbx2|14472|gastrulation brain homeobox 2
mm9_v1_chr18_+_21160434_21160595	3.83802	bHLH_family.p2	AK136138|Rnf138|56515|ring finger protein 138	AK004238|Rnf138|56515|ring finger protein 138	AK010486|Rnf138|56515|ring finger protein 138	BC003712|Rnf138|56515|ring finger protein 138	AK013419|Rnf138|56515|ring finger protein 138
mm9_v1_chr4_-_136965705_136965705	3.83759	bHLH_family.p2	NM_001126318|Gm13011|242711|predicted gene 13011
mm9_v1_chr5_-_144076737_144077070	3.83392	bHLH_family.p2	AK054218|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC082321|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC058940|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK050733|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC079853|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK041667|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK172614|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK086571|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK144964|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK053801|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK087531|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	NM_172726|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene
mm9_v1_chr4_-_116793851_116793888	3.82459	bHLH_family.p2	AK020599|Btbd19|78611|BTB (POZ) domain containing 19
mm9_v1_chr8_+_13159112_13159277	3.81767	bHLH_family.p2	NM_010684|Lamp1|16783|lysosomal-associated membrane protein 1	BC049097|Lamp1|16783|lysosomal-associated membrane protein 1	AY069968|Lamp1|16783|lysosomal-associated membrane protein 1	AK172007|Lamp1|16783|lysosomal-associated membrane protein 1	AK159096|Lamp1|16783|lysosomal-associated membrane protein 1	AK004637|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chrX_-_20539095_20539142	3.81446	bHLH_family.p2	AK027917|Uxt|22294|ubiquitously expressed transcript	NM_013840|Uxt|22294|ubiquitously expressed transcript	AK086822|Uxt|22294|ubiquitously expressed transcript	AK163983|Uxt|22294|ubiquitously expressed transcript
mm9_v1_chr15_+_34425046_34425096	3.81189	bHLH_family.p2	NM_026340|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	NM_152894|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	AK016547|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	BC034742|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	AK018297|Pop1|67724|processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
mm9_v1_chr14_-_68333666_68333666	3.81167	bHLH_family.p2	NM_001110162|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr16_-_8672242_8672250	3.80854	bHLH_family.p2	AK170411|Carhsp1|52502|calcium regulated heat stable protein 1	AK002853|Carhsp1|52502|calcium regulated heat stable protein 1	AK004711|Carhsp1|52502|calcium regulated heat stable protein 1	AK143612|Carhsp1|52502|calcium regulated heat stable protein 1	AK154460|Carhsp1|52502|calcium regulated heat stable protein 1	AK168504|Carhsp1|52502|calcium regulated heat stable protein 1	NM_025821|Carhsp1|52502|calcium regulated heat stable protein 1	AK003926|Carhsp1|52502|calcium regulated heat stable protein 1	AK149875|Carhsp1|52502|calcium regulated heat stable protein 1	AK155318|Carhsp1|52502|calcium regulated heat stable protein 1	AK158112|Carhsp1|52502|calcium regulated heat stable protein 1	AK158252|Carhsp1|52502|calcium regulated heat stable protein 1	AK165373|Carhsp1|52502|calcium regulated heat stable protein 1	AK171282|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr1_+_173155184_173155238	3.78838	bHLH_family.p2	NM_013474|Apoa2|11807|apolipoprotein A-II	M79361|Apoa2|11807|apolipoprotein A-II	M79362|Apoa2|11807|apolipoprotein A-II	AK145823|Apoa2|11807|apolipoprotein A-II	X62772|Apoa2|11807|apolipoprotein A-II	BC031786|Apoa2|11807|apolipoprotein A-II
mm9_v1_chr3_-_98143778_98143903	3.7858	bHLH_family.p2	BC086668|Phgdh|236539|3-phosphoglycerate dehydrogenase	BC110673|Phgdh|236539|3-phosphoglycerate dehydrogenase	AK147946|Phgdh|236539|3-phosphoglycerate dehydrogenase	AK076815|Phgdh|236539|3-phosphoglycerate dehydrogenase	AK169684|Phgdh|236539|3-phosphoglycerate dehydrogenase	NM_016966|Phgdh|236539|3-phosphoglycerate dehydrogenase
mm9_v1_chr17_-_34258691_34258691	3.78477	bHLH_family.p2	AK158970|Brd2|14312|bromodomain containing 2	NM_010238|Brd2|14312|bromodomain containing 2
mm9_v1_chr10_-_114752600_114752678	3.78282	bHLH_family.p2	AK172891|Rab21|216344|RAB21, member RAS oncogene family	BC055042|Rab21|216344|RAB21, member RAS oncogene family	NM_024454|Rab21|216344|RAB21, member RAS oncogene family	BC040104|Rab21|216344|RAB21, member RAS oncogene family
mm9_v1_chr2_+_146838735_146838857	3.77918	bHLH_family.p2	AK168037|Xrn2|24128|5'-3' exoribonuclease 2	AK031247|Xrn2|24128|5'-3' exoribonuclease 2	AK167019|Xrn2|24128|5'-3' exoribonuclease 2	BC054743|Xrn2|24128|5'-3' exoribonuclease 2	NM_011917|Xrn2|24128|5'-3' exoribonuclease 2	AK011711|Xrn2|24128|5'-3' exoribonuclease 2	AK053643|Xrn2|24128|5'-3' exoribonuclease 2	AK133654|Xrn2|24128|5'-3' exoribonuclease 2	AK163899|Xrn2|24128|5'-3' exoribonuclease 2	BC052395|Xrn2|24128|5'-3' exoribonuclease 2	AK004800|Xrn2|24128|5'-3' exoribonuclease 2	BC052823|Xrn2|24128|5'-3' exoribonuclease 2	D38517|Xrn2|24128|5'-3' exoribonuclease 2
mm9_v1_chr2_-_30329717_30329736	3.7791	bHLH_family.p2	BC003464|Ier5l|72500|immediate early response 5-like	BC010234|Ier5l|72500|immediate early response 5-like	BC040084|Ier5l|72500|immediate early response 5-like	NM_030244|Ier5l|72500|immediate early response 5-like	AK012145|Ier5l|72500|immediate early response 5-like
mm9_v1_chr4_-_138908210_138908289	3.77272	bHLH_family.p2	AK011387|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC005734|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	NM_023536|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	AK171445|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC096556|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC138221|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC145205|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC145209|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm9_v1_chr14_-_68333897_68333897	3.75556	bHLH_family.p2	BC075682|Cdca2|108912|cell division cycle associated 2	NM_175384|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr11_-_97560651_97560697	3.75284	bHLH_family.p2	BC016419|Pcgf2|22658|polycomb group ring finger 2	NM_001163307|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr16_-_8672226_8672229	3.75015	bHLH_family.p2	AK150245|Carhsp1|52502|calcium regulated heat stable protein 1	BC086754|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr16_+_16213434_16213437	3.74919	bHLH_family.p2	AK004650|Pkp2|67451|plakophilin 2	AK004731|Pkp2|67451|plakophilin 2	AK049481|Pkp2|67451|plakophilin 2	AK162000|Pkp2|67451|plakophilin 2	AK167660|Pkp2|67451|plakophilin 2	BC138252|Pkp2|67451|plakophilin 2	BC138253|Pkp2|67451|plakophilin 2	NM_026163|Pkp2|67451|plakophilin 2
mm9_v1_chr11_+_94491055_94491166	3.74802	bHLH_family.p2	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr7_-_128850659_128850766	3.74574	bHLH_family.p2	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr11_-_77978936_77979062	3.74359	bHLH_family.p2	AK178796|Traf4|22032|TNF receptor associated factor 4	AF233449|Traf4|22032|TNF receptor associated factor 4	AK035056|Traf4|22032|TNF receptor associated factor 4	AK040877|Traf4|22032|TNF receptor associated factor 4	BC020455|Traf4|22032|TNF receptor associated factor 4	AK053900|Traf4|22032|TNF receptor associated factor 4	NM_009423|Traf4|22032|TNF receptor associated factor 4
mm9_v1_chr2_-_91035191_91035217	3.73585	bHLH_family.p2	AK159250|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3	NM_013839|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3	BC012646|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3	AK143904|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3
mm9_v1_chr9_+_15110657_15110715	3.73546	bHLH_family.p2	NM_027261|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	NM_029248|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK016109|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK050165|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK158208|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK161656|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK166329|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK166633|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK012662|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK014920|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	BC110660|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D
mm9_v1_chr2_-_75542535_75542545	3.72675	bHLH_family.p2	BC057948|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr7_+_20162604_20162709	3.72078	bHLH_family.p2	NM_022409|Zfp296|63872|zinc finger protein 296	AK008748|Zfp296|63872|zinc finger protein 296	BC099454|Zfp296|63872|zinc finger protein 296
mm9_v1_chr2_-_91035226_91035272	3.71907	bHLH_family.p2	AJ132601|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3	AY195870|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3	AY195871|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3	NM_001177730|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3
mm9_v1_chr2_+_27370649_27370751	3.71713	bHLH_family.p2	NM_080848|Wdr5|140858|WD repeat domain 5	BC025801|Wdr5|140858|WD repeat domain 5	AK075937|Wdr5|140858|WD repeat domain 5	AK144091|Wdr5|140858|WD repeat domain 5	BC016103|Wdr5|140858|WD repeat domain 5
mm9_v1_chr11_+_69749297_69749476	3.71628	bHLH_family.p2	BC141112|Ybx2|53422|Y box protein 2	BC100454|Ybx2|53422|Y box protein 2	NM_016875|Ybx2|53422|Y box protein 2	AK131786|Ybx2|53422|Y box protein 2	AF073954|Ybx2|53422|Y box protein 2
mm9_v1_chr16_-_11254052_11254466	3.71415	bHLH_family.p2	BC031640|Gspt1|14852|G1 to S phase transition 1	AK030760|Gspt1|14852|G1 to S phase transition 1	AK032059|Gspt1|14852|G1 to S phase transition 1	AK148603|Gspt1|14852|G1 to S phase transition 1	AK134128|Gspt1|14852|G1 to S phase transition 1	AK037929|Gspt1|14852|G1 to S phase transition 1	AK166626|Gspt1|14852|G1 to S phase transition 1	NM_001130008|Gspt1|14852|G1 to S phase transition 1	NM_146066|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr17_+_15841889_15842002	3.71409	bHLH_family.p2	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr11_+_120534337_120534436	3.71336	bHLH_family.p2	BC022115|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	BC019177|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	BC031153|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	AY349133|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	AK088197|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm9_v1_chr3_+_90417072_90417127	3.71304	bHLH_family.p2	AK008241|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK008941|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK151587|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	M37761|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	X52278|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK150408|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK151144|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AF549497|S100a6|20200|S100 calcium binding protein A6 (calcyclin)
mm9_v1_chr5_+_23356371_23356439	3.71224	bHLH_family.p2	AK002390|2700038G22Rik|67194|RIKEN cDNA 2700038G22 gene
mm9_v1_chr8_+_18846524_18846553	3.70908	bHLH_family.p2	AK152889|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK003649|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK170093|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK152709|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	BC031987|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm9_v1_chr15_+_59146590_59147021	3.70841	bHLH_family.p2	AK148419|Sqle|20775|squalene epoxidase	AK138457|Sqle|20775|squalene epoxidase	BC056361|Sqle|20775|squalene epoxidase	NM_009270|Sqle|20775|squalene epoxidase	AK161837|Sqle|20775|squalene epoxidase	AK163502|Sqle|20775|squalene epoxidase	D42048|Sqle|20775|squalene epoxidase	AK202136|Sqle|20775|squalene epoxidase
mm9_v1_chrX_+_93291377_93291457	3.70578	bHLH_family.p2	AK133819|Msn|17698|moesin	AK145746|Msn|17698|moesin	AK150869|Msn|17698|moesin	AK153210|Msn|17698|moesin	NM_010833|Msn|17698|moesin	AK031171|Msn|17698|moesin	S47577|Msn|17698|moesin	BC047366|Msn|17698|moesin	AK157701|Msn|17698|moesin	AK087001|Msn|17698|moesin	AK088336|Msn|17698|moesin
mm9_v1_chr19_-_45309725_45309963	3.69784	bHLH_family.p2	AB108497|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	NM_010691|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	BC119177|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)	BC120586|Lbx1|16814|ladybird homeobox homolog 1 (Drosophila)
mm9_v1_chr9_-_114690887_114691007	3.69511	bHLH_family.p2	AK151785|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AF188504|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168280|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	NM_133978|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC038633|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK167886|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC026773|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168024|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AY241869|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK040123|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7
mm9_v1_chr5_+_140019846_140019918	3.68913	bHLH_family.p2	AK082472|Uncx|22255|UNC homeobox	NM_013702|Uncx|22255|UNC homeobox	AF247550|Uncx|22255|UNC homeobox	Z96107|Uncx|22255|UNC homeobox	BC051973|Uncx|22255|UNC homeobox	AJ001116|Uncx|22255|UNC homeobox	S83543|Uncx|22255|UNC homeobox
mm9_v1_chr7_+_26449356_26449419	3.68549	bHLH_family.p2	AK189469|Exosc5|27998|exosome component 5
mm9_v1_chr2_-_154395469_154395650	3.68432	bHLH_family.p2	AF483514|E2f1|13555|E2F transcription factor 1	AF483515|E2f1|13555|E2F transcription factor 1	BC052160|E2f1|13555|E2F transcription factor 1	L21973|E2f1|13555|E2F transcription factor 1	NM_007891|E2f1|13555|E2F transcription factor 1	AK153968|E2f1|13555|E2F transcription factor 1
mm9_v1_chr3_+_89577436_89577810	3.68228	bHLH_family.p2	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr15_+_80629020_80629144	3.67617	bHLH_family.p2	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_-_43044241_43044275	3.67078	bHLH_family.p2	AK002793|Stoml2|66592|stomatin (Epb7.2)-like 2	BC069941|Stoml2|66592|stomatin (Epb7.2)-like 2	BC003425|Stoml2|66592|stomatin (Epb7.2)-like 2	NM_023231|Stoml2|66592|stomatin (Epb7.2)-like 2	AF323178|Stoml2|66592|stomatin (Epb7.2)-like 2
mm9_v1_chr6_+_128313041_128313108	3.66588	bHLH_family.p2	AK041638|Foxm1|14235|forkhead box M1	AK049177|Foxm1|14235|forkhead box M1	Y11245|Foxm1|14235|forkhead box M1
mm9_v1_chr13_-_74946095_74946207	3.65634	bHLH_family.p2	AB026997|Cast|12380|calpastatin
mm9_v1_chr11_+_120353171_120353266	3.65593	bHLH_family.p2	AK083831|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AK008038|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AF188712|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AK050282|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	BC003222|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
mm9_v1_chr11_-_96777696_96777844	3.65037	bHLH_family.p2	AK153951|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK077853|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	BC002318|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	NM_030248|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK075791|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK165494|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK075771|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK050014|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK149765|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK166476|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3
mm9_v1_chr2_-_144096164_144096250	3.65028	bHLH_family.p2	AK159904|Snx5|69178|sorting nexin 5	AK167362|Snx5|69178|sorting nexin 5
mm9_v1_chr15_+_102038697_102038697	3.64991	bHLH_family.p2	BC030410|Zfp740|68744|zinc finger protein 740	NM_153194|Zfp740|68744|zinc finger protein 740
mm9_v1_chr14_-_64127928_64127993	3.63955	bHLH_family.p2	BC058860|Tdh|58865|L-threonine dehydrogenase	NM_021480|Tdh|58865|L-threonine dehydrogenase
mm9_v1_chr17_+_24769624_24769711	3.63921	bHLH_family.p2	AK033701|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	NM_008743|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	Y09688|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	BC138852|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	BC138855|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	BC145443|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	AB006812|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)
mm9_v1_chr13_-_94269762_94269770	3.63483	bHLH_family.p2	AK141957|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr10_-_17742931_17743059	3.63389	bHLH_family.p2	BC039801|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK171138|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	BC098509|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK013984|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	NM_028440|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene
mm9_v1_chr5_+_137463446_137463548	3.63067	bHLH_family.p2	AK088948|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AF046783|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm9_v1_chr14_+_31528352_31528352	3.63052	bHLH_family.p2	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr2_-_155648591_155648734	3.62021	bHLH_family.p2	AK198737|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr1_+_187186933_187187054	3.61907	bHLH_family.p2	AK088974|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK160986|Eprs|107508|glutamyl-prolyl-tRNA synthetase	NM_029735|Eprs|107508|glutamyl-prolyl-tRNA synthetase	BC040802|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK010734|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK147995|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK148463|Eprs|107508|glutamyl-prolyl-tRNA synthetase	BC058337|Eprs|107508|glutamyl-prolyl-tRNA synthetase	BC141049|Eprs|107508|glutamyl-prolyl-tRNA synthetase
mm9_v1_chr17_+_45823255_45823356	3.61006	bHLH_family.p2	AK144153|Mrpl14|68463|mitochondrial ribosomal protein L14	BC027021|Mrpl14|68463|mitochondrial ribosomal protein L14	NM_026732|Mrpl14|68463|mitochondrial ribosomal protein L14	AK050273|Mrpl14|68463|mitochondrial ribosomal protein L14	AK003500|Mrpl14|68463|mitochondrial ribosomal protein L14
mm9_v1_chr15_+_103070840_103070935	3.59804	bHLH_family.p2	AK131999|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK136113|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146630|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_001039129|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_010447|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168531|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK135391|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK152684|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK161730|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166901|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167161|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167810|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167811|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168420|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168733|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK169216|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK007802|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK088308|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146126|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166989|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167820|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167913|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	M99167|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC052723|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC080675|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC092395|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC089340|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC083136|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86728|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86729|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1
mm9_v1_chr1_-_17087821_17087878	3.59754	bHLH_family.p2	AB024445|Jph1|57339|junctophilin 1	NM_020604|Jph1|57339|junctophilin 1
mm9_v1_chr10_-_94877824_94877916	3.5966	bHLH_family.p2	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr13_+_34254902_34254947	3.59182	bHLH_family.p2	AK009887|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4
mm9_v1_chr10_-_82085891_82085972	3.57861	bHLH_family.p2	NM_001135567|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	NM_001135568|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	NM_001135569|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene
mm9_v1_chr11_-_120685860_120685860	3.57721	bHLH_family.p2	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr17_+_64950988_64951003	3.57607	bHLH_family.p2	NM_008549|Man2a1|17158|mannosidase 2, alpha 1	X61172|Man2a1|17158|mannosidase 2, alpha 1	BC138371|Man2a1|17158|mannosidase 2, alpha 1	BC138372|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr13_-_58375469_58375564	3.57383	bHLH_family.p2	BC052347|Gkap1|56278|G kinase anchoring protein 1	NM_019832|Gkap1|56278|G kinase anchoring protein 1
mm9_v1_chr9_+_56786000_56786014	3.568	bHLH_family.p2	AK209259|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm9_v1_chr4_+_132686434_132686575	3.56578	bHLH_family.p2	AK150140|Wasf2|242687|WAS protein family, member 2	BC051488|Wasf2|242687|WAS protein family, member 2	AK172187|Wasf2|242687|WAS protein family, member 2	AK085458|Wasf2|242687|WAS protein family, member 2	NM_153423|Wasf2|242687|WAS protein family, member 2
mm9_v1_chr15_+_81494399_81494424	3.5629	bHLH_family.p2	BC023933|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	BC030864|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AK141810|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr5_+_140895245_140895309	3.55802	bHLH_family.p2	AK033722|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK170938|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	NM_133916|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK167618|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK089978|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC031704|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC023767|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC051065|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B
mm9_v1_chr11_+_109224104_109224273	3.55768	bHLH_family.p2	NM_010303|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK011851|Gna13|14674|guanine nucleotide binding protein, alpha 13	M63660|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK149766|Gna13|14674|guanine nucleotide binding protein, alpha 13	BC057665|Gna13|14674|guanine nucleotide binding protein, alpha 13
mm9_v1_chr4_+_15193231_15193387	3.55567	bHLH_family.p2	AK170682|Tmem64|100201|transmembrane protein 64	AK035894|Tmem64|100201|transmembrane protein 64	AK169861|Tmem64|100201|transmembrane protein 64
mm9_v1_chr17_-_85189859_85189891	3.54658	bHLH_family.p2	BC059862|Lrpprc|72416|leucine-rich PPR-motif containing
mm9_v1_chrX_-_20539072_20539089	3.54361	bHLH_family.p2	BC082294|Uxt|22294|ubiquitously expressed transcript	BC029258|Uxt|22294|ubiquitously expressed transcript	AF092738|Uxt|22294|ubiquitously expressed transcript
mm9_v1_chr2_+_18598644_18598801	3.53935	bHLH_family.p2	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr11_+_98308147_98308152	3.5374	bHLH_family.p2	NM_010346|Grb7|14786|growth factor receptor bound protein 7	AK057640|Grb7|14786|growth factor receptor bound protein 7
mm9_v1_chr2_+_24831548_24831624	3.53649	bHLH_family.p2	NM_146251|Pnpla7|241274|patatin-like phospholipase domain containing 7	AK148380|Pnpla7|241274|patatin-like phospholipase domain containing 7	AK088362|Pnpla7|241274|patatin-like phospholipase domain containing 7	AK170417|Pnpla7|241274|patatin-like phospholipase domain containing 7	BC021312|Pnpla7|241274|patatin-like phospholipase domain containing 7
mm9_v1_chr7_-_28118628_28118706	3.53469	bHLH_family.p2	AK054297|Ltbp4|108075|latent transforming growth factor beta binding protein 4	BC059016|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AF410799|Ltbp4|108075|latent transforming growth factor beta binding protein 4	BC032073|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AK147753|Ltbp4|108075|latent transforming growth factor beta binding protein 4	NM_001113549|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AK157031|Ltbp4|108075|latent transforming growth factor beta binding protein 4
mm9_v1_chr11_-_120685392_120685417	3.5242	bHLH_family.p2	BC046513|Fasn|14104|fatty acid synthase
mm9_v1_chr8_+_109417539_109417610	3.52227	bHLH_family.p2	NM_011574|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	BC068113|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK144455|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK146263|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK150862|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK168470|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK173318|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr11_-_62462024_62462096	3.51073	bHLH_family.p2	BC053455|BC046404|192976|cDNA sequence BC046404	NM_198861|BC046404|192976|cDNA sequence BC046404
mm9_v1_chr11_-_109334909_109334911	3.5002	bHLH_family.p2	NM_001029842|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	AK032026|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr7_+_104845148_104845302	3.49451	bHLH_family.p2	AK133981|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK151356|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK151944|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK011789|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK031877|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK011691|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	BC005575|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	NM_023671|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK169259|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK078050|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	U53455|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A	AK180965|Clns1a|12729|chloride channel, nucleotide-sensitive, 1A
mm9_v1_chr19_-_4615523_4615557	3.48594	bHLH_family.p2	AK163603|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr11_+_98801024_98801024	3.48523	bHLH_family.p2	AK042163|Rara|19401|retinoic acid receptor, alpha	NM_001177303|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr10_-_119638448_119638648	3.48516	bHLH_family.p2	AJ440757|Irak3|73914|interleukin-1 receptor-associated kinase 3	BC120829|Irak3|73914|interleukin-1 receptor-associated kinase 3	BC120831|Irak3|73914|interleukin-1 receptor-associated kinase 3	BC144835|Irak3|73914|interleukin-1 receptor-associated kinase 3	AF461763|Irak3|73914|interleukin-1 receptor-associated kinase 3	AK029057|Irak3|73914|interleukin-1 receptor-associated kinase 3	NM_028679|Irak3|73914|interleukin-1 receptor-associated kinase 3	AK049210|Irak3|73914|interleukin-1 receptor-associated kinase 3	AK014783|Irak3|73914|interleukin-1 receptor-associated kinase 3
mm9_v1_chr13_-_3892788_3892823	3.4809	bHLH_family.p2	AJ010045|Net1|56349|neuroepithelial cell transforming gene 1	AK020636|Net1|56349|neuroepithelial cell transforming gene 1	AK088632|Net1|56349|neuroepithelial cell transforming gene 1	AK139921|Net1|56349|neuroepithelial cell transforming gene 1	BC004699|Net1|56349|neuroepithelial cell transforming gene 1	AK082128|Net1|56349|neuroepithelial cell transforming gene 1	NM_001047159|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr7_-_149482973_149482973	3.48048	bHLH_family.p2	BC104355|Krtap5-1|50774|keratin associated protein 5-1	NM_015808|Krtap5-1|50774|keratin associated protein 5-1
mm9_v1_chr4_+_153331341_153331408	3.47234	bHLH_family.p2	AK039812|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	BC052148|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_001163019|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_175287|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene
mm9_v1_chr9_+_123022332_123022396	3.47029	bHLH_family.p2	BC132363|Exosc7|66446|exosome component 7	BC145675|Exosc7|66446|exosome component 7	NM_001081188|Exosc7|66446|exosome component 7	AK085426|Exosc7|66446|exosome component 7	AK011294|Exosc7|66446|exosome component 7	BC039655|Exosc7|66446|exosome component 7	BC052656|Exosc7|66446|exosome component 7	AK129057|Exosc7|66446|exosome component 7
mm9_v1_chr8_-_124431581_124431590	3.46889	bHLH_family.p2	AK142288|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	NM_011404|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr9_+_108241599_108241672	3.46882	bHLH_family.p2	AK150548|Gpx1|14775|glutathione peroxidase 1	AK002245|Gpx1|14775|glutathione peroxidase 1	AK010999|Gpx1|14775|glutathione peroxidase 1	AK011019|Gpx1|14775|glutathione peroxidase 1	AK028171|Gpx1|14775|glutathione peroxidase 1	AK154833|Gpx1|14775|glutathione peroxidase 1	AK160388|Gpx1|14775|glutathione peroxidase 1	NM_008160|Gpx1|14775|glutathione peroxidase 1	BC086649|Gpx1|14775|glutathione peroxidase 1
mm9_v1_chr8_-_26149352_26149433	3.46205	bHLH_family.p2	AK046614|Htra4|330723|HtrA serine peptidase 4	BC132380|Htra4|330723|HtrA serine peptidase 4	BC145842|Htra4|330723|HtrA serine peptidase 4	NM_001081187|Htra4|330723|HtrA serine peptidase 4
mm9_v1_chr2_+_153171730_153171874	3.46014	bHLH_family.p2	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr17_-_24346171_24346241	3.45556	bHLH_family.p2	AF128866|Ntn3|18209|netrin 3	AK141856|Ntn3|18209|netrin 3
mm9_v1_chr12_-_103057259_103057314	3.44114	bHLH_family.p2	AK090129|Fbln5|23876|fibulin 5	NM_011812|Fbln5|23876|fibulin 5	AF112151|Fbln5|23876|fibulin 5	AK157936|Fbln5|23876|fibulin 5	AK159960|Fbln5|23876|fibulin 5	AK159471|Fbln5|23876|fibulin 5
mm9_v1_chr19_-_60866516_60866617	3.44004	bHLH_family.p2	AK172899|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	U14172|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK149482|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK161634|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145629|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK082006|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK087340|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK167010|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK043609|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	NM_010123|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145132|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A
mm9_v1_chr17_+_83750246_83750339	3.43615	bHLH_family.p2	AK144604|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114361|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114362|Eml4|78798|echinoderm microtubule associated protein like 4	NM_199466|Eml4|78798|echinoderm microtubule associated protein like 4	BC067011|Eml4|78798|echinoderm microtubule associated protein like 4	BC070427|Eml4|78798|echinoderm microtubule associated protein like 4	BC065178|Eml4|78798|echinoderm microtubule associated protein like 4	BC066099|Eml4|78798|echinoderm microtubule associated protein like 4	BC079619|Eml4|78798|echinoderm microtubule associated protein like 4
mm9_v1_chr12_-_32746061_32746210	3.43509	bHLH_family.p2	BC048710|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK011647|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK138963|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK041013|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK135621|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	NM_011158|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta
mm9_v1_chr10_-_75395207_75395224	3.43507	bHLH_family.p2	NM_008606|Mmp11|17385|matrix metallopeptidase 11	Z12604|Mmp11|17385|matrix metallopeptidase 11	BC052854|Mmp11|17385|matrix metallopeptidase 11	AK142169|Mmp11|17385|matrix metallopeptidase 11	AK165778|Mmp11|17385|matrix metallopeptidase 11
mm9_v1_chr3_-_96531361_96531401	3.42014	bHLH_family.p2	BC147485|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	BC151028|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	NM_028925|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	BC026793|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK217858|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK016716|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK140296|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK043194|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C
mm9_v1_chr17_-_56856195_56856299	3.41993	bHLH_family.p2	AK145854|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	AK078549|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	AK170944|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein
mm9_v1_chr8_-_97437166_97437286	3.41927	bHLH_family.p2	BC107374|Ccdc102a|234582|coiled-coil domain containing 102A	BC107375|Ccdc102a|234582|coiled-coil domain containing 102A	BC114992|Ccdc102a|234582|coiled-coil domain containing 102A
mm9_v1_chr9_-_34983552_34983647	3.41653	bHLH_family.p2	AK171018|Dcps|69305|decapping enzyme, scavenger	AK005584|Dcps|69305|decapping enzyme, scavenger	NM_027030|Dcps|69305|decapping enzyme, scavenger	AY040775|Dcps|69305|decapping enzyme, scavenger	AK169641|Dcps|69305|decapping enzyme, scavenger	BC016273|Dcps|69305|decapping enzyme, scavenger	AK078253|Dcps|69305|decapping enzyme, scavenger
mm9_v1_chr5_+_64550623_64550689	3.4158	bHLH_family.p2	AK122445|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr11_-_53520771_53520798	3.40602	bHLH_family.p2	BC058180|Rad50|19360|RAD50 homolog (S. cerevisiae)	U66887|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr2_-_73418334_73418394	3.40588	bHLH_family.p2	AK132589|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	X03986|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	AK029177|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	NM_007389|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	BC125439|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	BC137678|Chrna1|11435|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm9_v1_chr3_-_50247306_50247534	3.40383	bHLH_family.p2	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr11_-_117641895_117641934	3.40131	bHLH_family.p2	AY236497|Tmc6|217353|transmembrane channel-like gene family 6	AY263158|Tmc6|217353|transmembrane channel-like gene family 6	BC004840|Tmc6|217353|transmembrane channel-like gene family 6	BC058195|Tmc6|217353|transmembrane channel-like gene family 6	AK052814|Tmc6|217353|transmembrane channel-like gene family 6	NM_181321|Tmc6|217353|transmembrane channel-like gene family 6
mm9_v1_chr11_-_97560852_97560873	3.39786	bHLH_family.p2	AK142837|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr4_-_84320976_84320992	3.39301	bHLH_family.p2	AK030323|Bnc2|242509|basonuclin 2	NM_172870|Bnc2|242509|basonuclin 2
mm9_v1_chr15_-_36538691_36538736	3.39038	bHLH_family.p2	AK152064|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	BC046233|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK159703|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK044829|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK160883|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK160968|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK161671|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK168466|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK089747|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK150839|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK159733|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK005009|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK133196|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	AK161123|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	NM_008774|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1
mm9_v1_chr15_-_102501463_102501513	3.38824	bHLH_family.p2	BC081437|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK002311|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK012279|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK007747|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK075793|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	NM_026468|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm9_v1_chr12_+_114336416_114336628	3.38774	bHLH_family.p2	BC112910|Mta1|116870|metastasis associated 1	NM_054081|Mta1|116870|metastasis associated 1	AF288137|Mta1|116870|metastasis associated 1	AF463504|Mta1|116870|metastasis associated 1
mm9_v1_chr4_-_11003327_11003375	3.38327	bHLH_family.p2	AK009547|2310030N02Rik|76947|RIKEN cDNA 2310030N02 gene	AK041507|2310030N02Rik|76947|RIKEN cDNA 2310030N02 gene	NM_001085493|2310030N02Rik|76947|RIKEN cDNA 2310030N02 gene
mm9_v1_chr19_+_8969711_8969726	3.38248	bHLH_family.p2	AK179191|Ints5|109077|integrator complex subunit 5	AK183632|Ints5|109077|integrator complex subunit 5
mm9_v1_chr8_+_113557991_113558130	3.36816	bHLH_family.p2	AK044451|Aars|234734|alanyl-tRNA synthetase
mm9_v1_chr7_+_31758808_31758842	3.36496	bHLH_family.p2	AK133706|Fam187b|76415|family with sequence similarity 187, member B	AK148492|Fam187b|76415|family with sequence similarity 187, member B	BC019737|Fam187b|76415|family with sequence similarity 187, member B
mm9_v1_chr10_+_79317409_79317433	3.36103	bHLH_family.p2	AK033319|Ptbp1|19205|polypyrimidine tract binding protein 1	AK041143|Ptbp1|19205|polypyrimidine tract binding protein 1	AK051669|Ptbp1|19205|polypyrimidine tract binding protein 1	AK088126|Ptbp1|19205|polypyrimidine tract binding protein 1	AK036745|Ptbp1|19205|polypyrimidine tract binding protein 1	AK050498|Ptbp1|19205|polypyrimidine tract binding protein 1	AK053926|Ptbp1|19205|polypyrimidine tract binding protein 1	AK088483|Ptbp1|19205|polypyrimidine tract binding protein 1	AK149941|Ptbp1|19205|polypyrimidine tract binding protein 1	AK168359|Ptbp1|19205|polypyrimidine tract binding protein 1	BC028848|Ptbp1|19205|polypyrimidine tract binding protein 1	X52101|Ptbp1|19205|polypyrimidine tract binding protein 1	BC086489|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr1_-_145549903_145549945	3.35792	bHLH_family.p2	BC027756|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK080861|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr17_-_47748405_47748448	3.35751	bHLH_family.p2	AK083033|Bysl|53414|bystin-like	AK051704|Bysl|53414|bystin-like	AK049195|Bysl|53414|bystin-like	AK143027|Bysl|53414|bystin-like	NM_016859|Bysl|53414|bystin-like
mm9_v1_chr11_-_102680467_102680523	3.35049	bHLH_family.p2	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr2_-_163245205_163245247	3.34852	bHLH_family.p2	BC005579|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	NM_025699|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK009708|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK014323|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK088622|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK153499|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK006969|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene
mm9_v1_chr3_-_130974850_130975000	3.34716	bHLH_family.p2	BC028833|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK148481|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK075609|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK167024|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK168877|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	D29639|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK148486|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	NM_008212|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	BC064712|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK168238|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK132260|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK169261|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase
mm9_v1_chr11_+_102297838_102297879	3.34693	bHLH_family.p2	
mm9_v1_chr4_+_98590457_98590500	3.34441	bHLH_family.p2	AK080882|Usp1|230484|ubiquitin specific peptidase 1	NM_146144|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr8_-_26212588_26212598	3.33938	bHLH_family.p2	AK088395|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr15_+_76175485_76175500	3.33788	bHLH_family.p2	
mm9_v1_chr8_+_107115349_107115367	3.33122	bHLH_family.p2	NM_001024606|Pdp2|382051|pyruvate dehyrogenase phosphatase catalytic subunit 2
mm9_v1_chr5_+_124199713_124199760	3.32861	bHLH_family.p2	NM_001042421|Kntc1|208628|kinetochore associated 1	AK172905|Kntc1|208628|kinetochore associated 1
mm9_v1_chr16_+_8830175_8830249	3.3286	bHLH_family.p2	AK007485|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	NM_001081400|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116778|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116780|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene
mm9_v1_chr4_-_147818818_147818893	3.32829	bHLH_family.p2	BC071203|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK004550|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK078442|Ubiad1|71707|UbiA prenyltransferase domain containing 1	NM_027873|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK034787|Ubiad1|71707|UbiA prenyltransferase domain containing 1
mm9_v1_chr14_-_22668093_22668141	3.32585	bHLH_family.p2	CT010388|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC019467|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC049670|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK007659|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK054334|Comtd1|69156|catechol-O-methyltransferase domain containing 1	NM_026965|Comtd1|69156|catechol-O-methyltransferase domain containing 1
mm9_v1_chr15_+_81494375_81494386	3.32527	bHLH_family.p2	AK145560|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237000|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237001|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237002|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr5_+_115461102_115461223	3.32519	bHLH_family.p2	BC086646|Sppl3|74585|signal peptide peptidase 3	AK014709|Sppl3|74585|signal peptide peptidase 3
mm9_v1_chr11_-_113571330_113571330	3.31759	bHLH_family.p2	AK005072|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	NM_029794|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like
mm9_v1_chr4_-_136512727_136512761	3.31227	bHLH_family.p2	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr6_+_117857771_117857856	3.30931	bHLH_family.p2	NM_001166428|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	NM_001166429|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F
mm9_v1_chr14_+_21748646_21748736	3.30691	bHLH_family.p2	BC008520|Vcl|22330|vinculin	NM_009502|Vcl|22330|vinculin	L18880|Vcl|22330|vinculin
mm9_v1_chr4_-_134323845_134323948	3.2938	bHLH_family.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr8_+_87213145_87213176	3.28836	bHLH_family.p2	NM_001164559|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	NM_001164560|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	NM_198020|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	BC027404|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr8_+_18846471_18846514	3.28396	bHLH_family.p2	AK089885|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK082137|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm9_v1_chr9_-_79566271_79566499	3.28218	bHLH_family.p2	U25652|Col12a1|12816|collagen, type XII, alpha 1	NM_007730|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr8_-_124431559_124431577	3.28143	bHLH_family.p2	BC026131|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr17_-_23814399_23814413	3.27792	bHLH_family.p2	BC025860|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AF156164|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AK005382|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AK005530|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a
mm9_v1_chr15_+_99409485_99409583	3.27555	bHLH_family.p2	AK002689|Aqp2|11827|aquaporin 2	AK142567|Aqp2|11827|aquaporin 2	NM_009699|Aqp2|11827|aquaporin 2	BC019966|Aqp2|11827|aquaporin 2	AF020519|Aqp2|11827|aquaporin 2
mm9_v1_chr6_-_82724366_82724447	3.27396	bHLH_family.p2	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr11_-_93829556_93829648	3.27017	bHLH_family.p2	AF033377|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	AK034899|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	M35970|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	BC005629|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	U85511|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in	AK136353|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr6_-_52154455_52154585	3.26903	bHLH_family.p2	M36604|Hoxa5|15402|homeobox A5	X16840|Hoxa5|15402|homeobox A5	M28021|Hoxa5|15402|homeobox A5	NM_010453|Hoxa5|15402|homeobox A5
mm9_v1_chr18_-_6490682_6490821	3.26546	bHLH_family.p2	BC138622|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	BC138623|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AK010295|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr17_+_29629987_29630031	3.26445	bHLH_family.p2	AK154127|Pim1|18712|proviral integration site 1
mm9_v1_chr7_-_87377430_87377540	3.26404	bHLH_family.p2	AF173010|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AB006463|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK165472|Cib1|23991|calcium and integrin binding 1 (calmyrin)	BC003714|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK010345|Cib1|23991|calcium and integrin binding 1 (calmyrin)	BC054385|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK027915|Cib1|23991|calcium and integrin binding 1 (calmyrin)	NM_011870|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK088450|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK152805|Cib1|23991|calcium and integrin binding 1 (calmyrin)
mm9_v1_chr14_+_21748602_21748628	3.26238	bHLH_family.p2	AK077850|Vcl|22330|vinculin	AK135530|Vcl|22330|vinculin
mm9_v1_chr8_-_72657402_72657524	3.25882	bHLH_family.p2	
mm9_v1_chr11_-_77707282_77707373	3.25872	bHLH_family.p2	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chr12_-_74147698_74147707	3.25792	bHLH_family.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr10_-_5913894_5914027	3.2566	bHLH_family.p2	BC138908|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC145732|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	AK038060|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC002139|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	NM_024261|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC099894|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene
mm9_v1_chr7_+_3655919_3655955	3.25528	bHLH_family.p2	BC012491|Rps9|76846|ribosomal protein S9
mm9_v1_chr12_-_70298068_70298133	3.25518	bHLH_family.p2	AK075648|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	AK172494|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	EU599049|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	AK012767|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	BC058344|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	AK154254|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene
mm9_v1_chr16_-_92826307_92826318	3.2523	bHLH_family.p2	AK165307|Runx1|12394|runt related transcription factor 1	AK145098|Runx1|12394|runt related transcription factor 1	NM_001111021|Runx1|12394|runt related transcription factor 1	NM_001111022|Runx1|12394|runt related transcription factor 1	AK040240|Runx1|12394|runt related transcription factor 1
mm9_v1_chr7_-_72017803_72017939	3.25125	bHLH_family.p2	AF319979|Ndnl2|66647|necdin-like 2	BC034892|Ndnl2|66647|necdin-like 2	AK131157|Ndnl2|66647|necdin-like 2	AK010294|Ndnl2|66647|necdin-like 2	AK018250|Ndnl2|66647|necdin-like 2	BC092289|Ndnl2|66647|necdin-like 2	AK049759|Ndnl2|66647|necdin-like 2	AK076471|Ndnl2|66647|necdin-like 2	AK017727|Ndnl2|66647|necdin-like 2	NM_023239|Ndnl2|66647|necdin-like 2
mm9_v1_chr6_+_128312987_128313011	3.24136	bHLH_family.p2	BC075723|Foxm1|14235|forkhead box M1	BC065067|Foxm1|14235|forkhead box M1	NM_008021|Foxm1|14235|forkhead box M1
mm9_v1_chr7_-_52749530_52749570	3.23483	bHLH_family.p2	AK179888|Nucb1|18220|nucleobindin 1	AK215214|Nucb1|18220|nucleobindin 1	AK216538|Nucb1|18220|nucleobindin 1	AK034944|Nucb1|18220|nucleobindin 1
mm9_v1_chrX_+_97170927_97171053	3.22519	bHLH_family.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr2_-_38781939_38781980	3.21429	bHLH_family.p2	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr11_+_103635438_103635563	3.21018	bHLH_family.p2	AK132516|Wnt3|22415|wingless-related MMTV integration site 3	NM_009521|Wnt3|22415|wingless-related MMTV integration site 3	M32502|Wnt3|22415|wingless-related MMTV integration site 3	BC152305|Wnt3|22415|wingless-related MMTV integration site 3	BC152537|Wnt3|22415|wingless-related MMTV integration site 3	BC152304|Wnt3|22415|wingless-related MMTV integration site 3	AK141154|Wnt3|22415|wingless-related MMTV integration site 3	BC141271|Wnt3|22415|wingless-related MMTV integration site 3	BC141274|Wnt3|22415|wingless-related MMTV integration site 3
mm9_v1_chr5_+_147042806_147042851	3.20958	bHLH_family.p2	AK131948|Cdk8|264064|cyclin-dependent kinase 8
mm9_v1_chr11_+_96205082_96205082	3.20912	bHLH_family.p2	NM_010458|Hoxb3|15410|homeobox B3	S35628|Hoxb3|15410|homeobox B3	X66177|Hoxb3|15410|homeobox B3
mm9_v1_chr14_+_22319075_22319102	3.20718	bHLH_family.p2	AK052307|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	NM_017479|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	AF222800|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chr11_-_101646571_101646623	3.20362	bHLH_family.p2	AK166136|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144590|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144538|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	NM_008815|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr19_-_24299471_24299519	3.20265	bHLH_family.p2	NM_011597|Tjp2|21873|tight junction protein 2
mm9_v1_chr5_-_138227888_138227970	3.20215	bHLH_family.p2	AK154415|Mepce|231803|methylphosphate capping enzyme	NM_144913|Mepce|231803|methylphosphate capping enzyme
mm9_v1_chr7_-_152125521_152125630	3.19084	bHLH_family.p2	AK005352|Ccnd1|12443|cyclin D1
mm9_v1_chr6_-_125263750_125263903	3.18828	bHLH_family.p2	BC138590|Ltbr|17000|lymphotoxin B receptor	BC138591|Ltbr|17000|lymphotoxin B receptor	AK146127|Ltbr|17000|lymphotoxin B receptor	L38423|Ltbr|17000|lymphotoxin B receptor	U29173|Ltbr|17000|lymphotoxin B receptor	NM_010736|Ltbr|17000|lymphotoxin B receptor
mm9_v1_chr11_-_115473816_115473816	3.18671	bHLH_family.p2	BC055812|Mif4gd|69674|MIF4G domain containing	NM_027162|Mif4gd|69674|MIF4G domain containing
mm9_v1_chr15_+_102844438_102844438	3.18306	bHLH_family.p2	AK078527|Hoxc5|15424|homeobox C5	BC115551|Hoxc5|15424|homeobox C5	BC115552|Hoxc5|15424|homeobox C5	NM_175730|Hoxc5|15424|homeobox C5
mm9_v1_chr5_+_77380762_77380839	3.18096	bHLH_family.p2	AK002669|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK079282|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK166264|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK013426|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK075949|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK010462|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	BC018153|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr7_+_117266253_117266328	3.17671	bHLH_family.p2	AK039572|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr10_-_82085802_82085872	3.17597	bHLH_family.p2	BC038652|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	BC065417|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	AK004515|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	AK045413|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene
mm9_v1_chr2_+_30812810_30812845	3.17552	bHLH_family.p2	AK011416|Tor1b|30934|torsin family 1, member B
mm9_v1_chr16_+_16983503_16983678	3.17218	bHLH_family.p2	BC058258|Mapk1|26413|mitogen-activated protein kinase 1	D10939|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr19_+_45080961_45081073	3.16857	bHLH_family.p2	BC071195|Peo1|226153|progressive external ophthalmoplegia 1 (human)	NM_153796|Peo1|226153|progressive external ophthalmoplegia 1 (human)
mm9_v1_chr6_+_88034524_88034527	3.16841	bHLH_family.p2	BC085483|Rpn1|103963|ribophorin I
mm9_v1_chr6_+_72305440_72305522	3.1668	bHLH_family.p2	NM_144916|Tmem150a|232086|transmembrane protein 150A	BC028825|Tmem150a|232086|transmembrane protein 150A
mm9_v1_chr2_+_18594027_18594125	3.16658	bHLH_family.p2	AK145999|Commd3|12238|COMM domain containing 3	AK145955|Commd3|12238|COMM domain containing 3	BC038077|Commd3|12238|COMM domain containing 3	BC048815|Commd3|12238|COMM domain containing 3	AK007318|Commd3|12238|COMM domain containing 3	AK041634|Commd3|12238|COMM domain containing 3	NM_147778|Commd3|12238|COMM domain containing 3
mm9_v1_chr2_+_90875783_90875847	3.16511	bHLH_family.p2	AK009672|Rapsn|19400|receptor-associated protein of the synapse	NM_009023|Rapsn|19400|receptor-associated protein of the synapse	X15788|Rapsn|19400|receptor-associated protein of the synapse	BC111863|Rapsn|19400|receptor-associated protein of the synapse	J03962|Rapsn|19400|receptor-associated protein of the synapse
mm9_v1_chr8_+_34887177_34887229	3.16453	bHLH_family.p2	AK178391|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)
mm9_v1_chr12_-_56087322_56087322	3.16263	bHLH_family.p2	AK135668|Baz1a|217578|bromodomain adjacent to zinc finger domain 1A	NM_013815|Baz1a|217578|bromodomain adjacent to zinc finger domain 1A
mm9_v1_chr4_-_125879832_125879953	3.16242	bHLH_family.p2	AK034044|Thrap3|230753|thyroid hormone receptor associated protein 3	AK079601|Thrap3|230753|thyroid hormone receptor associated protein 3	BC026580|Thrap3|230753|thyroid hormone receptor associated protein 3	BC092239|Thrap3|230753|thyroid hormone receptor associated protein 3	AK169008|Thrap3|230753|thyroid hormone receptor associated protein 3	BC048391|Thrap3|230753|thyroid hormone receptor associated protein 3	NM_146153|Thrap3|230753|thyroid hormone receptor associated protein 3
mm9_v1_chr3_+_89050340_89050434	3.15512	bHLH_family.p2	AK002479|Krtcap2|66059|keratinocyte associated protein 2	NM_025327|Krtcap2|66059|keratinocyte associated protein 2	AK003310|Krtcap2|66059|keratinocyte associated protein 2	BC031492|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr11_-_102680999_102681013	3.15029	bHLH_family.p2	BC071230|Gjc1|14615|gap junction protein, gamma 1	NM_001159383|Gjc1|14615|gap junction protein, gamma 1	AY390396|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr1_+_182865152_182865206	3.14975	bHLH_family.p2	D83921|Lefty1|13590|left right determination factor 1	AK131943|Lefty1|13590|left right determination factor 1	NM_010094|Lefty1|13590|left right determination factor 1	AJ000082|Lefty1|13590|left right determination factor 1	Z73151|Lefty1|13590|left right determination factor 1	BC050221|Lefty1|13590|left right determination factor 1
mm9_v1_chr19_+_47253626_47253646	3.13966	bHLH_family.p2	AK010787|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr5_-_124875921_124875965	3.13832	bHLH_family.p2	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr9_-_108166059_108166072	3.13699	bHLH_family.p2	AK038702|Dag1|13138|dystroglycan 1	NM_010017|Dag1|13138|dystroglycan 1
mm9_v1_chr17_-_85189893_85189897	3.13298	bHLH_family.p2	BC060199|Lrpprc|72416|leucine-rich PPR-motif containing
mm9_v1_chr18_+_77303959_77304054	3.13278	bHLH_family.p2	AK078813|Pias2|17344|protein inhibitor of activated STAT 2	AK149142|Pias2|17344|protein inhibitor of activated STAT 2	AK086653|Pias2|17344|protein inhibitor of activated STAT 2	AF201391|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chrX_-_71176073_71176206	3.12867	bHLH_family.p2	BC004830|Renbp|19703|renin binding protein	AK167648|Renbp|19703|renin binding protein	AK014347|Renbp|19703|renin binding protein	BC014821|Renbp|19703|renin binding protein	BC035455|Renbp|19703|renin binding protein	BC034846|Renbp|19703|renin binding protein	AK146652|Renbp|19703|renin binding protein	AY183138|Renbp|19703|renin binding protein	NM_001164704|Renbp|19703|renin binding protein	NM_023132|Renbp|19703|renin binding protein
mm9_v1_chr4_+_154843223_154843242	3.12704	bHLH_family.p2	BC144992|Tmem52|69671|transmembrane protein 52	NM_027161|Tmem52|69671|transmembrane protein 52	BC150685|Tmem52|69671|transmembrane protein 52	AK009779|Tmem52|69671|transmembrane protein 52
mm9_v1_chr15_-_88971039_88971132	3.1245	bHLH_family.p2	BC021640|Mapk12|29857|mitogen-activated protein kinase 12	Y13439|Mapk12|29857|mitogen-activated protein kinase 12	AK011286|Mapk12|29857|mitogen-activated protein kinase 12	AK165741|Mapk12|29857|mitogen-activated protein kinase 12	NM_013871|Mapk12|29857|mitogen-activated protein kinase 12
mm9_v1_chr2_-_26927606_26927684	3.12043	bHLH_family.p2	BC062145|Tmem8c|66139|transmembrane protein 8C	AK004477|Tmem8c|66139|transmembrane protein 8C	AK003298|Tmem8c|66139|transmembrane protein 8C	NM_025376|Tmem8c|66139|transmembrane protein 8C
mm9_v1_chrX_+_136145321_136145344	3.11427	bHLH_family.p2	AF426411|Rnf128|66889|ring finger protein 128
mm9_v1_chr18_-_36675458_36675463	3.11065	bHLH_family.p2	AK164309|Hbegf|15200|heparin-binding EGF-like growth factor	NM_010415|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr7_+_152047290_152047409	3.10862	bHLH_family.p2	AK082814|Fgf4|14175|fibroblast growth factor 4	NM_010202|Fgf4|14175|fibroblast growth factor 4	BC104312|Fgf4|14175|fibroblast growth factor 4	BC104313|Fgf4|14175|fibroblast growth factor 4	M30642|Fgf4|14175|fibroblast growth factor 4
mm9_v1_chr11_-_106781995_106782028	3.10094	bHLH_family.p2	AK012060|Smurf2|66313|SMAD specific E3 ubiquitin protein ligase 2	NM_025481|Smurf2|66313|SMAD specific E3 ubiquitin protein ligase 2
mm9_v1_chr2_-_26997842_26997961	3.10025	bHLH_family.p2	BC147286|Fam163b|109349|family with sequence similarity 163, member B	BC147287|Fam163b|109349|family with sequence similarity 163, member B
mm9_v1_chr10_+_57206184_57206291	3.09917	bHLH_family.p2	AK053976|Hsf2|15500|heat shock factor 2	NM_008297|Hsf2|15500|heat shock factor 2	BC018414|Hsf2|15500|heat shock factor 2	AK052270|Hsf2|15500|heat shock factor 2
mm9_v1_chr15_+_81494368_81494374	3.09901	bHLH_family.p2	AK029115|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr11_-_99671205_99671209	3.09651	bHLH_family.p2	AK009035|Krtap4-13|69464|keratin associated protein 4-13	BC104358|Gm11554|670482|predicted gene 11554	BC104359|Gm11554|670482|predicted gene 11554	BC119472|Gm11554|670482|predicted gene 11554	BC119473|Gm11554|670482|predicted gene 11554	NM_001099313|Gm11554|670482|predicted gene 11554	NM_027087|Krtap4-13|69464|keratin associated protein 4-13
mm9_v1_chr7_+_87331726_87331785	3.09451	bHLH_family.p2	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr1_+_145487825_145487990	3.09265	bHLH_family.p2	AK036141|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	NM_020025|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK034371|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK083168|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK080106|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	BC046322|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm9_v1_chr13_+_34254827_34254896	3.09034	bHLH_family.p2	NM_001101430|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4	NM_001110515|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4	BC070417|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4
mm9_v1_chr2_+_151907264_151907264	3.08753	bHLH_family.p2	NM_001160410|Scrt2|545474|scratch homolog 2, zinc finger protein (Drosophila)
mm9_v1_chr2_-_144096518_144096579	3.07857	bHLH_family.p2	AK031873|Snx5|69178|sorting nexin 5	AK144710|Snx5|69178|sorting nexin 5	AK169545|Snx5|69178|sorting nexin 5	AK049129|Snx5|69178|sorting nexin 5	AK078776|Snx5|69178|sorting nexin 5	AK169786|Snx5|69178|sorting nexin 5	AK088223|Snx5|69178|sorting nexin 5	AK152311|Snx5|69178|sorting nexin 5
mm9_v1_chr7_+_87169699_87169719	3.07429	bHLH_family.p2	AK154953|Zfp710|209225|zinc finger protein 710	NM_001145999|Zfp710|209225|zinc finger protein 710	NM_001146000|Zfp710|209225|zinc finger protein 710	AK154871|Zfp710|209225|zinc finger protein 710
mm9_v1_chr2_-_48804794_48804803	3.07398	bHLH_family.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr10_-_75322897_75322929	3.07364	bHLH_family.p2	L07607|Mif|17319|macrophage migration inhibitory factor	Z23048|Mif|17319|macrophage migration inhibitory factor
mm9_v1_chr1_-_60154406_60154526	3.07338	bHLH_family.p2	AF239765|Wdr12|57750|WD repeat domain 12	AK149085|Wdr12|57750|WD repeat domain 12	AY059431|Wdr12|57750|WD repeat domain 12	BC096651|Wdr12|57750|WD repeat domain 12	AK012022|Wdr12|57750|WD repeat domain 12	AK031436|Wdr12|57750|WD repeat domain 12	AK007500|Wdr12|57750|WD repeat domain 12
mm9_v1_chr10_+_110357230_110357257	3.06202	bHLH_family.p2	AF037208|Csrp2|13008|cysteine and glycine-rich protein 2	AK010626|Csrp2|13008|cysteine and glycine-rich protein 2	NM_007792|Csrp2|13008|cysteine and glycine-rich protein 2	AK003328|Csrp2|13008|cysteine and glycine-rich protein 2	AK012647|Csrp2|13008|cysteine and glycine-rich protein 2	BC012663|Csrp2|13008|cysteine and glycine-rich protein 2
mm9_v1_chr9_+_107471447_107471514	3.06119	bHLH_family.p2	AK133886|Hyal2|15587|hyaluronoglucosaminidase 2	AK088806|Hyal2|15587|hyaluronoglucosaminidase 2	AJ000059|Hyal2|15587|hyaluronoglucosaminidase 2	AK087358|Hyal2|15587|hyaluronoglucosaminidase 2	AF302843|Hyal2|15587|hyaluronoglucosaminidase 2	AF422177|Hyal2|15587|hyaluronoglucosaminidase 2	NM_010489|Hyal2|15587|hyaluronoglucosaminidase 2	AF302844|Hyal2|15587|hyaluronoglucosaminidase 2
mm9_v1_chr5_-_125821251_125821395	3.0562	bHLH_family.p2	CT010222|Scarb1|20778|scavenger receptor class B, member 1	U37799|Scarb1|20778|scavenger receptor class B, member 1	AK158122|Scarb1|20778|scavenger receptor class B, member 1	AK010622|Scarb1|20778|scavenger receptor class B, member 1	AK033114|Scarb1|20778|scavenger receptor class B, member 1	AK145588|Scarb1|20778|scavenger receptor class B, member 1
mm9_v1_chr13_+_6547412_6547442	3.05349	bHLH_family.p2	AK147837|Pitrm1|69617|pitrilysin metallepetidase 1	AK129292|Pitrm1|69617|pitrilysin metallepetidase 1	AK164235|Pitrm1|69617|pitrilysin metallepetidase 1
mm9_v1_chr4_+_11083585_11083598	3.05325	bHLH_family.p2	AJ131776|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034611|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034612|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	NM_021897|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK054214|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK142321|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1
mm9_v1_chr15_+_73578771_73578842	3.05113	bHLH_family.p2	AK143702|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK172192|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK014601|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr6_+_126965559_126965657	3.05071	bHLH_family.p2	NM_010204|Fgf6|14177|fibroblast growth factor 6	AK086530|Fgf6|14177|fibroblast growth factor 6	M92416|Fgf6|14177|fibroblast growth factor 6
mm9_v1_chr9_-_43013831_43013943	3.04675	bHLH_family.p2	Z18537|Pou2f3|18988|POU domain, class 2, transcription factor 3	L14677|Pou2f3|18988|POU domain, class 2, transcription factor 3	NM_011139|Pou2f3|18988|POU domain, class 2, transcription factor 3
mm9_v1_chr11_-_106992869_106992950	3.03971	bHLH_family.p2	BC037661|Bptf|207165|bromodomain PHD finger transcription factor	BC046973|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr9_-_50554613_50554673	3.02869	bHLH_family.p2	AK007929|2310030G06Rik|66952|RIKEN cDNA 2310030G06 gene	AK011526|2310030G06Rik|66952|RIKEN cDNA 2310030G06 gene	BC027409|2310030G06Rik|66952|RIKEN cDNA 2310030G06 gene	NM_025865|2310030G06Rik|66952|RIKEN cDNA 2310030G06 gene	AK009541|2310030G06Rik|66952|RIKEN cDNA 2310030G06 gene	AK007611|2310030G06Rik|66952|RIKEN cDNA 2310030G06 gene
mm9_v1_chr15_-_38008565_38008625	3.02691	bHLH_family.p2	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chr15_+_79521293_79521438	3.02065	bHLH_family.p2	AK150068|Gtpbp1|14904|GTP binding protein 1	AK150185|Gtpbp1|14904|GTP binding protein 1	AK158342|Gtpbp1|14904|GTP binding protein 1	AK004612|Gtpbp1|14904|GTP binding protein 1	AK147717|Gtpbp1|14904|GTP binding protein 1	AK170091|Gtpbp1|14904|GTP binding protein 1	BC046228|Gtpbp1|14904|GTP binding protein 1	NM_013818|Gtpbp1|14904|GTP binding protein 1	U87965|Gtpbp1|14904|GTP binding protein 1
mm9_v1_chr3_+_90416815_90416815	3.01604	bHLH_family.p2	NM_011313|S100a6|20200|S100 calcium binding protein A6 (calcyclin)
mm9_v1_chr11_-_76577056_76577075	3.01488	bHLH_family.p2	BC008542|Gosr1|53334|golgi SNAP receptor complex member 1	NM_016810|Gosr1|53334|golgi SNAP receptor complex member 1	AK134515|Gosr1|53334|golgi SNAP receptor complex member 1	AK133836|Gosr1|53334|golgi SNAP receptor complex member 1	AK161386|Gosr1|53334|golgi SNAP receptor complex member 1	AF079901|Gosr1|53334|golgi SNAP receptor complex member 1	BC051661|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr2_+_126378563_126378890	3.01008	bHLH_family.p2	AK165446|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	NM_011978|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144069|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC013442|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC024735|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC022170|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AJ223958|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144070|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF033031|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF072757|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2
mm9_v1_chr11_-_109334465_109334613	3.00923	bHLH_family.p2	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr19_-_5424473_5424593	3.00539	bHLH_family.p2	AK005445|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr16_-_4559511_4559853	3.00372	bHLH_family.p2	AK053091|Tcfap4|83383|transcription factor AP4	BC054777|Tcfap4|83383|transcription factor AP4	BC047270|Tcfap4|83383|transcription factor AP4	AF161262|Tcfap4|83383|transcription factor AP4	NM_031182|Tcfap4|83383|transcription factor AP4	AK166424|Tcfap4|83383|transcription factor AP4
mm9_v1_chr2_+_151969288_151969344	3.00141	bHLH_family.p2	U18658|Tcf15|21407|transcription factor 15	BC027533|Tcf15|21407|transcription factor 15	NM_009328|Tcf15|21407|transcription factor 15
mm9_v1_chr2_+_32631305_32631345	2.9994	bHLH_family.p2	AK132137|Ptrh1|329384|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)	BC098218|Ptrh1|329384|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)	AK075833|Ptrh1|329384|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)	NM_178595|Ptrh1|329384|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)
mm9_v1_chr8_-_123181945_123181993	2.99916	bHLH_family.p2	AK185099|Cox4nb|18117|COX4 neighbor
mm9_v1_chr19_-_6932673_6932702	2.9981	bHLH_family.p2	BC151001|Ccdc88b|78317|coiled-coil domain containing 88B	BC151009|Ccdc88b|78317|coiled-coil domain containing 88B	BC157946|Ccdc88b|78317|coiled-coil domain containing 88B	NM_001081291|Ccdc88b|78317|coiled-coil domain containing 88B
mm9_v1_chr11_-_102742230_102742316	2.99758	bHLH_family.p2	U97079|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK172875|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK052242|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC052674|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC054778|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK150158|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165624|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK153473|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK154878|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165151|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_001109995|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_011431|Eftud2|20624|elongation factor Tu GTP binding domain containing 2
mm9_v1_chr15_+_81494364_81494367	2.97746	bHLH_family.p2	AK132012|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AK156236|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	NM_145993|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AK036510|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr17_-_10512094_10512209	2.97693	bHLH_family.p2	BC053426|Qk|19317|quaking
mm9_v1_chr10_+_127759512_127759609	2.9753	bHLH_family.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr3_+_88420058_88420079	2.97487	bHLH_family.p2	AK158232|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr5_+_77380615_77380657	2.97251	bHLH_family.p2	AK159398|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr10_-_81060076_81060095	2.9715	bHLH_family.p2	AK154391|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)
mm9_v1_chr7_+_28233013_28233084	2.97144	bHLH_family.p2	BC006617|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))	AK153153|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))
mm9_v1_chr17_-_33918382_33918492	2.96913	bHLH_family.p2	AF169313|Angptl4|57875|angiopoietin-like 4	AB054540|Angptl4|57875|angiopoietin-like 4	AF123261|Angptl4|57875|angiopoietin-like 4	AF278699|Angptl4|57875|angiopoietin-like 4	BC025797|Angptl4|57875|angiopoietin-like 4	BC006611|Angptl4|57875|angiopoietin-like 4	BC021343|Angptl4|57875|angiopoietin-like 4	AK032491|Angptl4|57875|angiopoietin-like 4	AK132761|Angptl4|57875|angiopoietin-like 4	AK134419|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr2_+_90687308_90687523	2.96227	bHLH_family.p2	AK008712|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	NM_019758|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC028929|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK016000|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011814|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038899|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038916|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK162807|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AF176009|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC065145|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK164169|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011874|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK151553|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008487|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK161441|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK007757|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008463|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011785|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK075890|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK003100|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK184198|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK215565|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK217615|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)
mm9_v1_chr9_-_14916551_14916551	2.96082	bHLH_family.p2	AK132457|Hephl1|244698|hephaestin-like 1	NM_001164797|Hephl1|244698|hephaestin-like 1
mm9_v1_chr15_-_60656465_60656634	2.96002	bHLH_family.p2	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr15_+_102797295_102797295	2.9597	bHLH_family.p2	AK033186|Hoxc10|209448|homeobox C10	NM_010462|Hoxc10|209448|homeobox C10
mm9_v1_chr18_-_42110847_42110895	2.95549	bHLH_family.p2	BC119251|Prelid2|77619|PRELI domain containing 2	BC120711|Prelid2|77619|PRELI domain containing 2	BC145035|Prelid2|77619|PRELI domain containing 2	NM_029942|Prelid2|77619|PRELI domain containing 2	AK021193|Prelid2|77619|PRELI domain containing 2
mm9_v1_chr2_-_144096253_144096308	2.95534	bHLH_family.p2	AK007676|Snx5|69178|sorting nexin 5	AK029463|Snx5|69178|sorting nexin 5	NM_024225|Snx5|69178|sorting nexin 5
mm9_v1_chr7_+_3646102_3646199	2.94921	bHLH_family.p2	NM_024168|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK053916|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	BC091756|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK010759|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	BC002205|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK013253|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)
mm9_v1_chr2_+_84667196_84667249	2.9478	bHLH_family.p2	AF150090|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	BC031448|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	AK013546|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr11_-_78364173_78364273	2.94771	bHLH_family.p2	BC093511|Tmem97|69071|transmembrane protein 97	AK171954|Tmem97|69071|transmembrane protein 97	BC018156|Tmem97|69071|transmembrane protein 97	NM_133706|Tmem97|69071|transmembrane protein 97	AK155107|Tmem97|69071|transmembrane protein 97
mm9_v1_chr4_+_120712225_120712235	2.94625	bHLH_family.p2	BC029697|Col9a2|12840|collagen, type IX, alpha 2
mm9_v1_chr1_+_182823238_182823249	2.9415	bHLH_family.p2	AK031621|Lefty2|320202|left-right determination factor 2	AK131960|Lefty2|320202|left-right determination factor 2	BC066224|Lefty2|320202|left-right determination factor 2	NM_177099|Lefty2|320202|left-right determination factor 2
mm9_v1_chr19_+_45081114_45081218	2.94059	bHLH_family.p2	AK146244|Peo1|226153|progressive external ophthalmoplegia 1 (human)
mm9_v1_chr11_+_117652219_117652236	2.9392	bHLH_family.p2	AK136329|Tmc8|217356|transmembrane channel-like gene family 8
mm9_v1_chr1_-_192994532_192994569	2.9339	bHLH_family.p2	AK217100|Atf3|11910|activating transcription factor 3
mm9_v1_chr6_-_124662063_124662115	2.93162	bHLH_family.p2	BC002004|Emg1|14791|EMG1 nucleolar protein homolog (S. cerevisiae)
mm9_v1_chr10_-_75322941_75323054	2.92601	bHLH_family.p2	AK010691|Mif|17319|macrophage migration inhibitory factor	BC086928|Mif|17319|macrophage migration inhibitory factor	BC100605|Mif|17319|macrophage migration inhibitory factor	L02913|Mif|17319|macrophage migration inhibitory factor	AK152211|Mif|17319|macrophage migration inhibitory factor	BC024895|Mif|17319|macrophage migration inhibitory factor	L10613|Mif|17319|macrophage migration inhibitory factor	AK008939|Mif|17319|macrophage migration inhibitory factor	AK013328|Mif|17319|macrophage migration inhibitory factor	NM_010798|Mif|17319|macrophage migration inhibitory factor
mm9_v1_chr2_-_91035167_91035185	2.92177	bHLH_family.p2	AF085745|Nr1h3|22259|nuclear receptor subfamily 1, group H, member 3
mm9_v1_chr5_+_130417868_130418036	2.92031	bHLH_family.p2	BC085133|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1	NM_001001327|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1	NM_027121|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1	BC125315|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1	BC138132|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1	AK078942|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1	AY423046|Vkorc1l1|69568|vitamin K epoxide reductase complex, subunit 1-like 1
mm9_v1_chr9_-_103268075_103268109	2.91931	bHLH_family.p2	NM_001134426|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_175565|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_175833|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr15_+_76199307_76199353	2.9172	bHLH_family.p2	AB041552|Fam203a|59053|family with sequence similarity 203, member A	NM_021555|Fam203a|59053|family with sequence similarity 203, member A	AK085815|Fam203a|59053|family with sequence similarity 203, member A
mm9_v1_chr15_+_100058310_100058499	2.90096	bHLH_family.p2	BC006871|Atf1|11908|activating transcription factor 1	AK010428|Atf1|11908|activating transcription factor 1	M63725|Atf1|11908|activating transcription factor 1
mm9_v1_chr7_+_53631843_53631909	2.90001	bHLH_family.p2	AK076157|Myod1|17927|myogenic differentiation 1	NM_010866|Myod1|17927|myogenic differentiation 1	AK142859|Myod1|17927|myogenic differentiation 1	M84918|Myod1|17927|myogenic differentiation 1	M18779|Myod1|17927|myogenic differentiation 1	BC103613|Myod1|17927|myogenic differentiation 1	BC103618|Myod1|17927|myogenic differentiation 1	BC103619|Myod1|17927|myogenic differentiation 1
mm9_v1_chr12_+_88075318_88075318	2.89877	bHLH_family.p2	NM_001195767|Gm6772|627607|predicted gene 6772
mm9_v1_chr12_-_74147683_74147691	2.89464	bHLH_family.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr15_-_75751888_75752008	2.88414	bHLH_family.p2	BC026536|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK013214|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK002912|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK012519|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK019237|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK004291|Pycrl|66194|pyrroline-5-carboxylate reductase-like	NM_025412|Pycrl|66194|pyrroline-5-carboxylate reductase-like
mm9_v1_chrX_-_160465891_160465950	2.8817	bHLH_family.p2	BC034413|Car5b|56078|carbonic anhydrase 5b, mitochondrial	AK046691|Car5b|56078|carbonic anhydrase 5b, mitochondrial	AK085670|Car5b|56078|carbonic anhydrase 5b, mitochondrial	NM_181315|Car5b|56078|carbonic anhydrase 5b, mitochondrial
mm9_v1_chr9_-_110556645_110556664	2.88159	bHLH_family.p2	BC157956|Nbeal2|235627|neurobeachin-like 2	BC172118|Nbeal2|235627|neurobeachin-like 2	NM_183276|Nbeal2|235627|neurobeachin-like 2
mm9_v1_chr11_-_97643677_97643690	2.88062	bHLH_family.p2	AK168133|Rpl23|65019|ribosomal protein L23	AF287271|Rpl23|65019|ribosomal protein L23	BC025918|Rpl23|65019|ribosomal protein L23	BC081448|Rpl23|65019|ribosomal protein L23
mm9_v1_chr11_-_99712918_99712918	2.87917	bHLH_family.p2	BC016249|Krtap4-16|435285|keratin associated protein 4-16	NM_001013823|Krtap4-16|435285|keratin associated protein 4-16
mm9_v1_chr7_+_35697397_35697452	2.8779	bHLH_family.p2	AK145843|Pepd|18624|peptidase D	BC131945|Pepd|18624|peptidase D	BC131973|Pepd|18624|peptidase D	NM_008820|Pepd|18624|peptidase D	U51014|Pepd|18624|peptidase D	AK168384|Pepd|18624|peptidase D	AK010581|Pepd|18624|peptidase D	D82983|Pepd|18624|peptidase D	BC086644|Pepd|18624|peptidase D
mm9_v1_chr11_+_81849074_81849163	2.87566	bHLH_family.p2	AK150937|Ccl2|20296|chemokine (C-C motif) ligand 2	AK153468|Ccl2|20296|chemokine (C-C motif) ligand 2	AK153520|Ccl2|20296|chemokine (C-C motif) ligand 2	NM_011333|Ccl2|20296|chemokine (C-C motif) ligand 2	AK132590|Ccl2|20296|chemokine (C-C motif) ligand 2	AK151789|Ccl2|20296|chemokine (C-C motif) ligand 2	AK153443|Ccl2|20296|chemokine (C-C motif) ligand 2	BC055070|Ccl2|20296|chemokine (C-C motif) ligand 2	BC145867|Ccl2|20296|chemokine (C-C motif) ligand 2	BC145869|Ccl2|20296|chemokine (C-C motif) ligand 2	AF065929|Ccl2|20296|chemokine (C-C motif) ligand 2	AF065930|Ccl2|20296|chemokine (C-C motif) ligand 2	AF065931|Ccl2|20296|chemokine (C-C motif) ligand 2	AF065932|Ccl2|20296|chemokine (C-C motif) ligand 2	AF065933|Ccl2|20296|chemokine (C-C motif) ligand 2	CT010187|Ccl2|20296|chemokine (C-C motif) ligand 2
mm9_v1_chr12_-_74147370_74147450	2.86981	bHLH_family.p2	X80339|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK031122|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr19_+_37282150_37282364	2.86933	bHLH_family.p2	AK007511|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132455|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132457|March5|69104|membrane-associated ring finger (C3HC4) 5	BC064752|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107215|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107214|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr19_-_40662819_40662952	2.86637	bHLH_family.p2	BC037699|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK166459|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK166494|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AF056573|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AF056574|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK159610|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK147711|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK153946|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK168905|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK151072|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK134148|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	NM_019698|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	NM_153554|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1
mm9_v1_chr15_+_101858606_101858684	2.86292	bHLH_family.p2	NM_010664|Krt18|16668|keratin 18	M11686|Krt18|16668|keratin 18	AK167469|Krt18|16668|keratin 18	AK145413|Krt18|16668|keratin 18	AK167072|Krt18|16668|keratin 18	AK167676|Krt18|16668|keratin 18	AK167432|Krt18|16668|keratin 18	AK167265|Krt18|16668|keratin 18	M36376|Krt18|16668|keratin 18	BC020474|Krt18|16668|keratin 18	BC089022|Krt18|16668|keratin 18
mm9_v1_chr12_-_77278242_77278245	2.86098	bHLH_family.p2	AK054290|Esr2|13983|estrogen receptor 2 (beta)	AK054301|Esr2|13983|estrogen receptor 2 (beta)	AK054413|Esr2|13983|estrogen receptor 2 (beta)	NM_010157|Esr2|13983|estrogen receptor 2 (beta)	NM_207707|Esr2|13983|estrogen receptor 2 (beta)
mm9_v1_chr19_-_7070522_7070538	2.85926	bHLH_family.p2	AK002252|Nudt22|68323|nudix (nucleoside diphosphate linked moiety X)-type motif 22	NM_026675|Nudt22|68323|nudix (nucleoside diphosphate linked moiety X)-type motif 22
mm9_v1_chr2_+_143741243_143741349	2.85896	bHLH_family.p2	AK078898|Dstn|56431|destrin	AB025406|Dstn|56431|destrin	BC131926|Dstn|56431|destrin
mm9_v1_chr2_+_121275069_121275180	2.85689	bHLH_family.p2	AK010749|Serf2|378702|small EDRK-rich factor 2	BC092136|Serf2|378702|small EDRK-rich factor 2	AK012395|Serf2|378702|small EDRK-rich factor 2	AK132746|Serf2|378702|small EDRK-rich factor 2	AK151362|Serf2|378702|small EDRK-rich factor 2	AK008802|Serf2|378702|small EDRK-rich factor 2	BC081455|Serf2|378702|small EDRK-rich factor 2	AF073297|Serf2|378702|small EDRK-rich factor 2	AK169106|Serf2|378702|small EDRK-rich factor 2	AK012603|Serf2|378702|small EDRK-rich factor 2	AK168858|Serf2|378702|small EDRK-rich factor 2	AK002351|Serf2|378702|small EDRK-rich factor 2	AK018746|Serf2|378702|small EDRK-rich factor 2
mm9_v1_chr3_+_93324411_93324431	2.85628	bHLH_family.p2	AK164352|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)	NM_016740|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)	AK002490|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)	AK003889|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)	BC086903|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)
mm9_v1_chr3_+_51219971_51220063	2.85529	bHLH_family.p2	AF510858|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit	BC050017|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr2_-_25089722_25089726	2.855	bHLH_family.p2	AB054999|Slc34a3|142681|solute carrier family 34 (sodium phosphate), member 3	NM_080854|Slc34a3|142681|solute carrier family 34 (sodium phosphate), member 3
mm9_v1_chr2_+_74536030_74536036	2.85091	bHLH_family.p2	AK134427|Hoxd9|15438|homeobox D9
mm9_v1_chr9_-_14650214_14650214	2.85055	bHLH_family.p2	NM_001111330|Gm16379|100040259|predicted pseudogene 16379
mm9_v1_chr4_-_149356331_149356331	2.84643	bHLH_family.p2	AK169086|H6pd|100198|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm9_v1_chr10_-_76576422_76576449	2.8451	bHLH_family.p2	U11637|Col18a1|12822|collagen, type XVIII, alpha 1	BC043697|Col18a1|12822|collagen, type XVIII, alpha 1	NM_001109991|Col18a1|12822|collagen, type XVIII, alpha 1
mm9_v1_chr7_-_31900188_31900326	2.84185	bHLH_family.p2	BC138809|Hpn|15451|hepsin	BC145413|Hpn|15451|hepsin	AF030065|Hpn|15451|hepsin	AY234104|Hpn|15451|hepsin	AK002694|Hpn|15451|hepsin	NM_001110252|Hpn|15451|hepsin	NM_008281|Hpn|15451|hepsin
mm9_v1_chr12_+_77634546_77634606	2.83495	bHLH_family.p2	AK080928|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	NM_153804|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	BC096443|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	AK162025|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
mm9_v1_chr2_+_84667174_84667190	2.83261	bHLH_family.p2	AK008088|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	NM_013899|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr12_+_3426883_3427022	2.83066	bHLH_family.p2	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr10_-_117283020_117283117	2.83018	bHLH_family.p2	BC052480|Rap1b|215449|RAS related protein 1b	NM_024457|Rap1b|215449|RAS related protein 1b	AK163242|Rap1b|215449|RAS related protein 1b
mm9_v1_chr3_+_16083164_16083288	2.82795	bHLH_family.p2	NM_001145919|Ythdf3|229096|YTH domain family 3	NM_172677|Ythdf3|229096|YTH domain family 3	BC067040|Ythdf3|229096|YTH domain family 3	AK039176|Ythdf3|229096|YTH domain family 3	AK137245|Ythdf3|229096|YTH domain family 3	BC067042|Ythdf3|229096|YTH domain family 3	AK053736|Ythdf3|229096|YTH domain family 3	BC057158|Ythdf3|229096|YTH domain family 3
mm9_v1_chr19_-_34952377_34952406	2.82601	bHLH_family.p2	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr11_-_68787314_68787359	2.82511	bHLH_family.p2	BC087921|Rangrf|57785|RAN guanine nucleotide release factor	NM_001101644|Gm4535|100043585|predicted gene 4535	NM_021329|Rangrf|57785|RAN guanine nucleotide release factor	AF243512|Rangrf|57785|RAN guanine nucleotide release factor	BC038470|Rangrf|57785|RAN guanine nucleotide release factor	AK010288|Rangrf|57785|RAN guanine nucleotide release factor
mm9_v1_chr9_-_21564723_21564737	2.82443	bHLH_family.p2	AK031680|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK075950|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116238|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116239|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_026282|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC086683|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC056965|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC098472|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chrX_-_71526939_71526996	2.82343	bHLH_family.p2	DQ116784|Dnase1l1|69537|deoxyribonuclease 1-like 1	AK150242|Dnase1l1|69537|deoxyribonuclease 1-like 1
mm9_v1_chr11_-_43649708_43649999	2.82254	bHLH_family.p2	BC138653|Adra1b|11548|adrenergic receptor, alpha 1b	BC138654|Adra1b|11548|adrenergic receptor, alpha 1b	AK043877|Adra1b|11548|adrenergic receptor, alpha 1b	NM_007416|Adra1b|11548|adrenergic receptor, alpha 1b	AK139448|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chr5_-_100407613_100407631	2.81604	bHLH_family.p2	BC011172|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr6_-_124662155_124662210	2.8119	bHLH_family.p2	AK081757|Emg1|14791|EMG1 nucleolar protein homolog (S. cerevisiae)	NM_013536|Emg1|14791|EMG1 nucleolar protein homolog (S. cerevisiae)
mm9_v1_chr6_-_91066809_91066837	2.80416	bHLH_family.p2	AK157272|Nup210|54563|nucleoporin 210	BC052468|Nup210|54563|nucleoporin 210	AK053417|Nup210|54563|nucleoporin 210	NM_018815|Nup210|54563|nucleoporin 210
mm9_v1_chr8_+_128258102_128258213	2.79355	bHLH_family.p2	AK010823|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	NM_025636|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	AK019321|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	AK010229|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	AK019421|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	AK086714|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	AK006433|Ntpcr|66566|nucleoside-triphosphatase, cancer-related	BC025168|Ntpcr|66566|nucleoside-triphosphatase, cancer-related
mm9_v1_chr11_-_72225084_72225217	2.79349	bHLH_family.p2	AK085988|Smtnl2|276829|smoothelin-like 2	BC037993|Smtnl2|276829|smoothelin-like 2	AK051585|Smtnl2|276829|smoothelin-like 2	NM_177776|Smtnl2|276829|smoothelin-like 2
mm9_v1_chr8_+_73017009_73017206	2.79329	bHLH_family.p2	NM_018827|Crlf1|12931|cytokine receptor-like factor 1	AB040038|Crlf1|12931|cytokine receptor-like factor 1	BC107376|Crlf1|12931|cytokine receptor-like factor 1	BC107377|Crlf1|12931|cytokine receptor-like factor 1	BC114407|Crlf1|12931|cytokine receptor-like factor 1
mm9_v1_chr9_-_48288692_48288741	2.79208	bHLH_family.p2	AK007731|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	NM_024233|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK090202|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr13_+_6547402_6547410	2.79026	bHLH_family.p2	AF513714|Pitrm1|69617|pitrilysin metallepetidase 1	AY779273|Pitrm1|69617|pitrilysin metallepetidase 1	AY779274|Pitrm1|69617|pitrilysin metallepetidase 1	NM_145131|Pitrm1|69617|pitrilysin metallepetidase 1	AK141277|Pitrm1|69617|pitrilysin metallepetidase 1	AK167426|Pitrm1|69617|pitrilysin metallepetidase 1	AK168335|Pitrm1|69617|pitrilysin metallepetidase 1
mm9_v1_chr9_-_22193627_22193649	2.78819	bHLH_family.p2	NM_028390|Anln|68743|anillin, actin binding protein
mm9_v1_chr8_+_108384479_108384590	2.78435	bHLH_family.p2	BC083165|Nutf2|68051|nuclear transport factor 2	AK152212|Nutf2|68051|nuclear transport factor 2	BC003955|Nutf2|68051|nuclear transport factor 2	NM_026532|Nutf2|68051|nuclear transport factor 2	AK020512|Nutf2|68051|nuclear transport factor 2	AK028410|Nutf2|68051|nuclear transport factor 2	AK002461|Nutf2|68051|nuclear transport factor 2	AK012500|Nutf2|68051|nuclear transport factor 2	AK051049|Nutf2|68051|nuclear transport factor 2	AK168026|Nutf2|68051|nuclear transport factor 2	BC086773|Nutf2|68051|nuclear transport factor 2
mm9_v1_chr11_-_106134024_106134359	2.78375	bHLH_family.p2	AK166123|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	AK159259|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_001130187|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr9_+_107951572_107951664	2.78367	bHLH_family.p2	AK165816|Gmppb|331026|GDP-mannose pyrophosphorylase B	AK158470|Gmppb|331026|GDP-mannose pyrophosphorylase B	NM_177910|Gmppb|331026|GDP-mannose pyrophosphorylase B	AK148125|Gmppb|331026|GDP-mannose pyrophosphorylase B	AK088295|Gmppb|331026|GDP-mannose pyrophosphorylase B	BC061207|Gmppb|331026|GDP-mannose pyrophosphorylase B
mm9_v1_chr3_+_87710187_87710249	2.7823	bHLH_family.p2	NM_008231|Hdgf|15191|hepatoma-derived growth factor
mm9_v1_chrX_-_71167183_71167282	2.77962	bHLH_family.p2	BC027219|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK009697|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK014469|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK003806|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK078700|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AY183136|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AY183137|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	NM_001177965|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	NM_019870|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10
mm9_v1_chr16_-_95219189_95219332	2.77882	bHLH_family.p2	U51125|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC120794|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC125565|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51122|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51123|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51124|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U11859|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U37253|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK139056|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025584|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025585|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_010606|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK044218|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr13_-_10360048_10360092	2.77686	bHLH_family.p2	AK080950|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac	NM_033269|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac	AK051841|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac
mm9_v1_chr2_-_26788845_26789009	2.77669	bHLH_family.p2	AK216354|Surf4|20932|surfeit gene 4	AK150568|Surf4|20932|surfeit gene 4	AK151319|Surf4|20932|surfeit gene 4	BC027352|Surf4|20932|surfeit gene 4	AK151161|Surf4|20932|surfeit gene 4	BC003280|Surf4|20932|surfeit gene 4	AK152692|Surf4|20932|surfeit gene 4	AK004691|Surf4|20932|surfeit gene 4	AK128902|Surf4|20932|surfeit gene 4	AK145670|Surf4|20932|surfeit gene 4
mm9_v1_chr6_+_54766562_54766917	2.77454	bHLH_family.p2	AF513708|Znrf2|387524|zinc and ring finger 2	NM_199143|Znrf2|387524|zinc and ring finger 2	BC104316|Znrf2|387524|zinc and ring finger 2	BC104317|Znrf2|387524|zinc and ring finger 2	BC125242|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr7_+_148645664_148645872	2.77341	bHLH_family.p2	BC026807|Pnpla2|66853|patatin-like phospholipase domain containing 2
mm9_v1_chr11_+_120345915_120346014	2.76885	bHLH_family.p2	AK134816|Mrpl12|56282|mitochondrial ribosomal protein L12	AK166969|Mrpl12|56282|mitochondrial ribosomal protein L12	AK002757|Mrpl12|56282|mitochondrial ribosomal protein L12	AK028168|Mrpl12|56282|mitochondrial ribosomal protein L12	AK168337|Mrpl12|56282|mitochondrial ribosomal protein L12	BC005712|Mrpl12|56282|mitochondrial ribosomal protein L12	NM_027204|Mrpl12|56282|mitochondrial ribosomal protein L12	BC019565|Mrpl12|56282|mitochondrial ribosomal protein L12
mm9_v1_chr11_+_95528269_95528342	2.76739	bHLH_family.p2	NM_008831|Phb|18673|prohibitin	AK178178|Phb|18673|prohibitin	AK168248|Phb|18673|prohibitin	AK002714|Phb|18673|prohibitin	AK152933|Phb|18673|prohibitin	AK150956|Phb|18673|prohibitin	AK151073|Phb|18673|prohibitin	AK010619|Phb|18673|prohibitin	AK160490|Phb|18673|prohibitin	AK168656|Phb|18673|prohibitin	X78682|Phb|18673|prohibitin
mm9_v1_chr11_-_107050573_107050694	2.76644	bHLH_family.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr1_-_33814537_33814587	2.76414	bHLH_family.p2	AK083600|Bag2|213539|BCL2-associated athanogene 2	AK051352|Bag2|213539|BCL2-associated athanogene 2	BC028944|Bag2|213539|BCL2-associated athanogene 2	AK144720|Bag2|213539|BCL2-associated athanogene 2
mm9_v1_chr11_+_102294276_102294332	2.75769	bHLH_family.p2	BC037047|Grn|14824|granulin	X62321|Grn|14824|granulin	AK196399|Grn|14824|granulin	AK205747|Grn|14824|granulin
mm9_v1_chr5_+_20930720_20930881	2.75702	bHLH_family.p2	NM_177869|Fam185a|330050|family with sequence similarity 185, member A	AK030922|Fam185a|330050|family with sequence similarity 185, member A	AK076256|Fam185a|330050|family with sequence similarity 185, member A	BC055342|Fam185a|330050|family with sequence similarity 185, member A
mm9_v1_chr7_-_52071027_52071027	2.7552	bHLH_family.p2	AF375476|Atf5|107503|activating transcription factor 5	NM_030693|Atf5|107503|activating transcription factor 5
mm9_v1_chr3_+_40512792_40512804	2.75428	bHLH_family.p2	AK006599|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	AK132722|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	NM_178386|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
mm9_v1_chr14_+_55059217_55059253	2.75208	bHLH_family.p2	AY622974|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chrX_+_102275071_102275146	2.75137	bHLH_family.p2	AK007655|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK030507|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK076889|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	NM_026312|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC035042|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK011610|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC061070|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC044719|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene
mm9_v1_chr9_-_115219553_115219594	2.74077	bHLH_family.p2	AK152899|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr6_-_22306070_22306242	2.73807	bHLH_family.p2	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr7_-_148358709_148358768	2.73045	bHLH_family.p2	AK145173|Rnh1|107702|ribonuclease/angiogenin inhibitor 1	NM_001172100|Rnh1|107702|ribonuclease/angiogenin inhibitor 1
mm9_v1_chr6_+_7795223_7795332	2.72941	bHLH_family.p2	NM_052993|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	AF157962|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	BC064767|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm9_v1_chr15_+_99803786_99803821	2.72794	bHLH_family.p2	
mm9_v1_chr1_-_75139207_75139284	2.72566	bHLH_family.p2	AK169779|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK145962|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene
mm9_v1_chr4_+_151699954_151699986	2.72259	bHLH_family.p2	BC007139|Rpl22|19934|ribosomal protein L22	AK003022|Rpl22|19934|ribosomal protein L22	AK169731|Rpl22|19934|ribosomal protein L22	AK009094|Rpl22|19934|ribosomal protein L22	D17653|Rpl22|19934|ribosomal protein L22	AK168353|Rpl22|19934|ribosomal protein L22	AK169078|Rpl22|19934|ribosomal protein L22	BC021344|Rpl22|19934|ribosomal protein L22	NM_009079|Rpl22|19934|ribosomal protein L22
mm9_v1_chr2_+_32251776_32251794	2.72212	bHLH_family.p2	BC004846|Ptges2|96979|prostaglandin E synthase 2	AK050616|Ptges2|96979|prostaglandin E synthase 2	AK002798|Ptges2|96979|prostaglandin E synthase 2
mm9_v1_chr6_-_38249209_38249350	2.71663	bHLH_family.p2	AK084475|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	AK045287|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	AK051064|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	NM_172467|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	BC138180|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	BC138181|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like
mm9_v1_chr17_-_71202829_71202871	2.71639	bHLH_family.p2	AK160193|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164074|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr11_-_94103862_94104034	2.71482	bHLH_family.p2	AY308804|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	BC113144|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	NM_181819|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	AY100450|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm9_v1_chr11_+_3863948_3864033	2.71128	bHLH_family.p2	AK029075|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	NM_022889|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC004844|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC011142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK088831|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AF289539|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK220142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm9_v1_chr8_+_34807688_34807718	2.70957	bHLH_family.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr15_+_102797226_102797241	2.70727	bHLH_family.p2	BC053405|Hoxc10|209448|homeobox C10	AK138664|Hoxc10|209448|homeobox C10
mm9_v1_chr1_+_180117854_180117958	2.70682	bHLH_family.p2	BC002200|Pppde1|78825|PPPDE peptidase domain containing 1	AK160733|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr6_-_52141697_52141712	2.69897	bHLH_family.p2	AK076098|Hoxa4|15401|homeobox A4	BC107172|Hoxa4|15401|homeobox A4	NM_008265|Hoxa4|15401|homeobox A4
mm9_v1_chr3_-_68848588_68848638	2.69637	bHLH_family.p2	BC025430|Trim59|66949|tripartite motif-containing 59	BC006700|Trim59|66949|tripartite motif-containing 59	AK016642|Trim59|66949|tripartite motif-containing 59
mm9_v1_chr11_+_32105414_32105503	2.69295	bHLH_family.p2	AK019452|Snrnp25|78372|small nuclear ribonucleoprotein 25 (U11/U12)	NM_030093|Snrnp25|78372|small nuclear ribonucleoprotein 25 (U11/U12)	BC028766|Snrnp25|78372|small nuclear ribonucleoprotein 25 (U11/U12)
mm9_v1_chr8_+_94881694_94881780	2.69169	bHLH_family.p2	BC056994|Irx5|54352|Iroquois related homeobox 5 (Drosophila)	NM_018826|Irx5|54352|Iroquois related homeobox 5 (Drosophila)
mm9_v1_chrX_+_48194918_48194941	2.67544	bHLH_family.p2	BC132438|2610018G03Rik|70415|RIKEN cDNA 2610018G03 gene	BC138193|2610018G03Rik|70415|RIKEN cDNA 2610018G03 gene	BC145189|2610018G03Rik|70415|RIKEN cDNA 2610018G03 gene
mm9_v1_chr7_+_28954717_28954778	2.6751	bHLH_family.p2	BC092274|Fbl|14113|fibrillarin	BC003813|Fbl|14113|fibrillarin	NM_007991|Fbl|14113|fibrillarin	AK012620|Fbl|14113|fibrillarin	AK146328|Fbl|14113|fibrillarin	Z22593|Fbl|14113|fibrillarin
mm9_v1_chr19_-_4615661_4615689	2.6715	bHLH_family.p2	NM_153388|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr1_+_151947225_151947270	2.66647	bHLH_family.p2	AK144956|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK149820|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK166221|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK172161|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	M64291|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK144726|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	M94967|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	M88242|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	NM_011198|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	AK049923|Ptgs2|19225|prostaglandin-endoperoxide synthase 2	BC052900|Ptgs2|19225|prostaglandin-endoperoxide synthase 2
mm9_v1_chr9_-_53475610_53475616	2.66645	bHLH_family.p2	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr1_+_173155414_173155449	2.66478	bHLH_family.p2	X04119|Apoa2|11807|apolipoprotein A-II	S79794|Apoa2|11807|apolipoprotein A-II
mm9_v1_chr12_+_88488104_88488148	2.66178	bHLH_family.p2	AB041613|Gstz1|14874|glutathione transferase zeta 1 (maleylacetoacetate isomerase)
mm9_v1_chr11_-_117641951_117641998	2.65375	bHLH_family.p2	AK090179|Tmc6|217353|transmembrane channel-like gene family 6	NM_145439|Tmc6|217353|transmembrane channel-like gene family 6
mm9_v1_chr11_-_93829704_93829834	2.65176	bHLH_family.p2	NM_008704|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr12_-_72237590_72237690	2.64793	bHLH_family.p2	AK012712|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK171071|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AF150101|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	BC028435|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	BC024370|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK018764|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK165848|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	NM_001024853|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	NM_001024854|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	NM_013896|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK172179|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)
mm9_v1_chr1_-_75176703_75176874	2.64026	bHLH_family.p2	AF045562|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	BC006634|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	NM_023732|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AK040323|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AK164003|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm9_v1_chr2_+_31428244_31428356	2.63956	bHLH_family.p2	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr7_-_149763600_149763608	2.63801	bHLH_family.p2	X58196|H19|14955|H19 fetal liver mRNA
mm9_v1_chr3_+_87752614_87752658	2.63764	bHLH_family.p2	NM_007759|Crabp2|12904|cellular retinoic acid binding protein II	BC018397|Crabp2|12904|cellular retinoic acid binding protein II	M35523|Crabp2|12904|cellular retinoic acid binding protein II
mm9_v1_chr1_-_75503026_75503062	2.63753	bHLH_family.p2	AK031074|Obsl1|98733|obscurin-like 1	NM_178884|Obsl1|98733|obscurin-like 1
mm9_v1_chr19_+_5447546_5447754	2.633	bHLH_family.p2	AK144785|Fosl1|14283|fos-like antigen 1	NM_010235|Fosl1|14283|fos-like antigen 1	AK144839|Fosl1|14283|fos-like antigen 1	AK145035|Fosl1|14283|fos-like antigen 1	BC052917|Fosl1|14283|fos-like antigen 1	U34245|Fosl1|14283|fos-like antigen 1
mm9_v1_chr17_-_71351465_71351521	2.62906	bHLH_family.p2	BC089050|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	BC029180|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK028020|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr13_-_49063188_49063196	2.62734	bHLH_family.p2	BC158134|Fam120a|218236|family with sequence similarity 120, member A	NM_001033268|Fam120a|218236|family with sequence similarity 120, member A
mm9_v1_chr2_+_18598882_18599030	2.62733	bHLH_family.p2	BC053708|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr5_+_77380665_77380712	2.62709	bHLH_family.p2	AK012118|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr1_+_173367685_173367771	2.62505	bHLH_family.p2	AK033574|F11r|16456|F11 receptor	NM_172647|F11r|16456|F11 receptor	BC021876|F11r|16456|F11 receptor	CT010347|F11r|16456|F11 receptor
mm9_v1_chr17_-_81464406_81464435	2.62243	bHLH_family.p2	AK012806|Thumpd2|72167|THUMP domain containing 2	NM_028138|Thumpd2|72167|THUMP domain containing 2
mm9_v1_chr2_+_152737083_152737087	2.61889	bHLH_family.p2	AK079396|Mylk2|228785|myosin, light polypeptide kinase 2, skeletal muscle	NM_001081044|Mylk2|228785|myosin, light polypeptide kinase 2, skeletal muscle
mm9_v1_chr9_+_56958585_56958640	2.61471	bHLH_family.p2	AK136972|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr5_+_23907911_23908059	2.61116	bHLH_family.p2	AK212771|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr8_-_87956665_87956752	2.60874	bHLH_family.p2	BC050139|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK169408|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC027027|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK017512|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK014959|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	NM_025722|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr11_+_117193594_117193626	2.60494	bHLH_family.p2	NM_001113488|Sept9|53860|septin 9
mm9_v1_chr17_-_45823145_45823192	2.60401	bHLH_family.p2	NM_198167|Tmem63b|224807|transmembrane protein 63b	AK159673|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr9_-_108166100_108166104	2.60318	bHLH_family.p2	BC007150|Dag1|13138|dystroglycan 1
mm9_v1_chr11_+_69727693_69727762	2.59926	bHLH_family.p2	BC011317|Gps2|56310|G protein pathway suppressor 2	NM_019726|Gps2|56310|G protein pathway suppressor 2	BC138880|Gps2|56310|G protein pathway suppressor 2	BC138879|Gps2|56310|G protein pathway suppressor 2
mm9_v1_chr6_-_128312829_128312952	2.58894	bHLH_family.p2	AK156717|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene	BC027368|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene	AK146167|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene	AK168313|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene
mm9_v1_chr7_-_134170532_134170710	2.58381	bHLH_family.p2	BC004758|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr7_+_52104591_52104713	2.58333	bHLH_family.p2	AK003638|Akt1s1|67605|AKT1 substrate 1 (proline-rich)	NM_026270|Akt1s1|67605|AKT1 substrate 1 (proline-rich)	AK141771|Akt1s1|67605|AKT1 substrate 1 (proline-rich)	AK154110|Akt1s1|67605|AKT1 substrate 1 (proline-rich)	BC132372|Akt1s1|67605|AKT1 substrate 1 (proline-rich)	BC132374|Akt1s1|67605|AKT1 substrate 1 (proline-rich)	AK030571|Akt1s1|67605|AKT1 substrate 1 (proline-rich)
mm9_v1_chr15_-_9070066_9070213	2.58319	bHLH_family.p2	AF083215|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK204645|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC003468|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC092236|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK167677|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK037002|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK044212|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK166034|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK032979|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC098371|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_013787|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_145468|Skp2|27401|S-phase kinase-associated protein 2 (p45)
mm9_v1_chr2_+_160471623_160471632	2.58294	bHLH_family.p2	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr10_+_80102813_80103107	2.58114	bHLH_family.p2	AK180542|Csnk1g2|103236|casein kinase 1, gamma 2	AK182278|Csnk1g2|103236|casein kinase 1, gamma 2	AK184141|Csnk1g2|103236|casein kinase 1, gamma 2	AK184876|Csnk1g2|103236|casein kinase 1, gamma 2	AK013192|Csnk1g2|103236|casein kinase 1, gamma 2
mm9_v1_chr14_-_21000972_21001030	2.57971	bHLH_family.p2	BC051088|Kcnk5|16529|potassium channel, subfamily K, member 5	BC058164|Kcnk5|16529|potassium channel, subfamily K, member 5	AK085330|Kcnk5|16529|potassium channel, subfamily K, member 5	AK172608|Kcnk5|16529|potassium channel, subfamily K, member 5	NM_021542|Kcnk5|16529|potassium channel, subfamily K, member 5	BC034012|Kcnk5|16529|potassium channel, subfamily K, member 5	AK132172|Kcnk5|16529|potassium channel, subfamily K, member 5
mm9_v1_chr3_-_129534032_129534091	2.57795	bHLH_family.p2	AK075923|Gar1|68147|GAR1 ribonucleoprotein homolog (yeast)	AK167001|Gar1|68147|GAR1 ribonucleoprotein homolog (yeast)	AK021256|Gar1|68147|GAR1 ribonucleoprotein homolog (yeast)
mm9_v1_chr6_+_88415396_88415624	2.57361	bHLH_family.p2	NM_019685|Ruvbl1|56505|RuvB-like protein 1	AK146374|Ruvbl1|56505|RuvB-like protein 1	AK146258|Ruvbl1|56505|RuvB-like protein 1	AK132783|Ruvbl1|56505|RuvB-like protein 1	AK156078|Ruvbl1|56505|RuvB-like protein 1	BC004718|Ruvbl1|56505|RuvB-like protein 1	AK145062|Ruvbl1|56505|RuvB-like protein 1	AK012170|Ruvbl1|56505|RuvB-like protein 1
mm9_v1_chrX_+_45610055_45610110	2.57314	bHLH_family.p2	AK134348|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	BC062165|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK165575|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK165628|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK012492|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	BC082590|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK134784|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AY316163|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK172924|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	NM_028276|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
mm9_v1_chr11_-_63892874_63892978	2.56593	bHLH_family.p2	AK213695|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC038046|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC018301|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK149999|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK171661|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK010385|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK154668|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK156865|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK172718|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	NM_178379|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)
mm9_v1_chr10_-_126778634_126778717	2.56427	bHLH_family.p2	AF026305|Gli1|14632|GLI-Kruppel family member GLI1	NM_010296|Gli1|14632|GLI-Kruppel family member GLI1	AB025922|Gli1|14632|GLI-Kruppel family member GLI1
mm9_v1_chr9_-_48288689_48288691	2.56008	bHLH_family.p2	AK172641|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr3_+_80841086_80841191	2.55363	bHLH_family.p2	AK052947|Pdgfc|54635|platelet-derived growth factor, C polypeptide	BC029099|Pdgfc|54635|platelet-derived growth factor, C polypeptide	AF117608|Pdgfc|54635|platelet-derived growth factor, C polypeptide	BC037696|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr15_-_75901305_75901332	2.55321	bHLH_family.p2	AK178088|Puf60|67959|poly-U binding splicing factor 60	AK182094|Puf60|67959|poly-U binding splicing factor 60	AK207327|Puf60|67959|poly-U binding splicing factor 60
mm9_v1_chr3_+_129581477_129581610	2.54715	bHLH_family.p2	BC051117|Pla2g12a|66350|phospholipase A2, group XIIA	AK010011|Pla2g12a|66350|phospholipase A2, group XIIA	NM_023196|Pla2g12a|66350|phospholipase A2, group XIIA	AY007381|Pla2g12a|66350|phospholipase A2, group XIIA	AK010174|Pla2g12a|66350|phospholipase A2, group XIIA	BC026812|Pla2g12a|66350|phospholipase A2, group XIIA	AK003183|Pla2g12a|66350|phospholipase A2, group XIIA	AK012414|Pla2g12a|66350|phospholipase A2, group XIIA	AK163693|Pla2g12a|66350|phospholipase A2, group XIIA
mm9_v1_chr10_-_106922986_106923189	2.54009	bHLH_family.p2	X56182|Myf5|17877|myogenic factor 5	BC132144|Myf5|17877|myogenic factor 5	AK044894|Myf5|17877|myogenic factor 5	AK083402|Myf5|17877|myogenic factor 5	NM_008656|Myf5|17877|myogenic factor 5
mm9_v1_chr12_+_82127791_82127817	2.53757	bHLH_family.p2	AK040931|Smoc1|64075|SPARC related modular calcium binding 1	NM_001146217|Smoc1|64075|SPARC related modular calcium binding 1	NM_022316|Smoc1|64075|SPARC related modular calcium binding 1	BC031804|Smoc1|64075|SPARC related modular calcium binding 1	AF070470|Smoc1|64075|SPARC related modular calcium binding 1
mm9_v1_chrX_+_33868347_33868594	2.53688	bHLH_family.p2	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr15_+_76199357_76199385	2.53116	bHLH_family.p2	BC061251|Fam203a|59053|family with sequence similarity 203, member A
mm9_v1_chr15_-_38944066_38944183	2.52972	bHLH_family.p2	AK031187|Slc25a32|69906|solute carrier family 25, member 32	AK167501|Slc25a32|69906|solute carrier family 25, member 32	BC031874|Slc25a32|69906|solute carrier family 25, member 32
mm9_v1_chr19_+_47253657_47253740	2.50602	bHLH_family.p2	AF400063|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr2_+_32307683_32307754	2.50433	bHLH_family.p2	BC057613|Naif1|71254|nuclear apoptosis inducing factor 1
mm9_v1_chr6_+_124662387_124662454	2.50351	bHLH_family.p2	AK135729|Phb2|12034|prohibitin 2	AY319418|Phb2|12034|prohibitin 2
mm9_v1_chr17_+_25377114_25377187	2.49904	bHLH_family.p2	AK158743|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	NM_001163718|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	NM_026676|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK002309|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK003675|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK170074|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	BC089019|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK169072|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene
mm9_v1_chr7_+_52105323_52105411	2.49439	bHLH_family.p2	BC002180|Akt1s1|67605|AKT1 substrate 1 (proline-rich)
mm9_v1_chr1_+_64737918_64737918	2.49102	bHLH_family.p2	NM_001097644|Ccnyl1|227210|cyclin Y-like 1
mm9_v1_chr13_-_38750866_38750905	2.48942	bHLH_family.p2	AK009889|Eef1e1|66143|eukaryotic translation elongation factor 1 epsilon 1	AK003335|Eef1e1|66143|eukaryotic translation elongation factor 1 epsilon 1	AK160723|Eef1e1|66143|eukaryotic translation elongation factor 1 epsilon 1	BC048466|Eef1e1|66143|eukaryotic translation elongation factor 1 epsilon 1	NM_025380|Eef1e1|66143|eukaryotic translation elongation factor 1 epsilon 1
mm9_v1_chr19_+_10278684_10278739	2.48766	bHLH_family.p2	NM_026919|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK145833|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK007351|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	BC085316|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene
mm9_v1_chr9_+_108462759_108462899	2.48563	bHLH_family.p2	AK169129|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK169788|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK146362|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK151706|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK166667|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	M33934|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK002676|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK011777|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK143505|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK150713|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK151233|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK152691|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK160569|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK159822|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	BC052671|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	BC010314|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	NM_011830|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	M98333|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2
mm9_v1_chr7_+_109054350_109054514	2.48484	bHLH_family.p2	NM_025605|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK010247|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK013389|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC126973|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK144476|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC020142|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK003509|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC092062|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK009320|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC096412|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK019947|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK203171|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene
mm9_v1_chr4_-_48486214_48486324	2.48306	bHLH_family.p2	AK011904|Tex10|269536|testis expressed gene 10	BC151176|Tex10|269536|testis expressed gene 10	BC151177|Tex10|269536|testis expressed gene 10	AK132870|Tex10|269536|testis expressed gene 10	NM_172304|Tex10|269536|testis expressed gene 10	AK013375|Tex10|269536|testis expressed gene 10	AK141288|Tex10|269536|testis expressed gene 10
mm9_v1_chr9_+_53192102_53192318	2.47796	bHLH_family.p2	NM_212445|Kdelc2|68304|KDEL (Lys-Asp-Glu-Leu) containing 2	AK075811|Kdelc2|68304|KDEL (Lys-Asp-Glu-Leu) containing 2
mm9_v1_chr16_-_96349334_96349335	2.47	bHLH_family.p2	AK010763|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr8_-_26212614_26212665	2.46854	bHLH_family.p2	AK153117|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AK032325|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr3_+_93324437_93324454	2.46647	bHLH_family.p2	BC021916|S100a11|20195|S100 calcium binding protein A11 (calgizzarin)
mm9_v1_chr8_+_73063553_73063604	2.46586	bHLH_family.p2	NM_007924|Ell|13716|elongation factor RNA polymerase II	AK159027|Ell|13716|elongation factor RNA polymerase II	U80227|Ell|13716|elongation factor RNA polymerase II	BC014816|Ell|13716|elongation factor RNA polymerase II	BC024894|Ell|13716|elongation factor RNA polymerase II
mm9_v1_chr7_-_86993011_86993179	2.46426	bHLH_family.p2	AK171427|Anpep|16790|alanyl (membrane) aminopeptidase
mm9_v1_chr3_-_19164956_19164968	2.46133	bHLH_family.p2	U68171|Pde7a|18583|phosphodiesterase 7A	AK168957|Pde7a|18583|phosphodiesterase 7A	NM_008802|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr13_-_54788995_54789018	2.45972	bHLH_family.p2	AK160090|Rnf44|105239|ring finger protein 44	AK160115|Rnf44|105239|ring finger protein 44
mm9_v1_chr4_+_147413185_147413279	2.45629	bHLH_family.p2	AF404271|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_010840|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK030192|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404272|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr11_-_100644485_100644492	2.4538	bHLH_family.p2	AK004071|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr5_-_92392073_92392174	2.45247	bHLH_family.p2	BC057143|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	NM_026557|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr2_+_172847371_172847458	2.45152	bHLH_family.p2	AK166609|Rbm38|56190|RNA binding motif protein 38	NM_019547|Rbm38|56190|RNA binding motif protein 38	BC006687|Rbm38|56190|RNA binding motif protein 38	AK162141|Rbm38|56190|RNA binding motif protein 38	AK146026|Rbm38|56190|RNA binding motif protein 38	AK172625|Rbm38|56190|RNA binding motif protein 38	BC085307|Rbm38|56190|RNA binding motif protein 38
mm9_v1_chr12_-_114180283_114180368	2.44701	bHLH_family.p2	AK013174|Nudt14|66174|nudix (nucleoside diphosphate linked moiety X)-type motif 14	BC025444|Nudt14|66174|nudix (nucleoside diphosphate linked moiety X)-type motif 14	NM_025399|Nudt14|66174|nudix (nucleoside diphosphate linked moiety X)-type motif 14	AK003991|Nudt14|66174|nudix (nucleoside diphosphate linked moiety X)-type motif 14
mm9_v1_chr13_+_21272015_21272138	2.44689	bHLH_family.p2	AK031744|Trim27|19720|tripartite motif-containing 27	BC069924|Trim27|19720|tripartite motif-containing 27	BC085503|Trim27|19720|tripartite motif-containing 27
mm9_v1_chr11_+_85646309_85646316	2.44622	bHLH_family.p2	AK149348|Tbx2|21385|T-box 2
mm9_v1_chr14_-_70843185_70843279	2.44163	bHLH_family.p2	AK156587|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D	BC016102|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D	NM_025945|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr14_+_31832374_31832396	2.43849	bHLH_family.p2	AK030781|Pbrm1|66923|polybromo 1
mm9_v1_chr2_+_167906462_167906503	2.43101	bHLH_family.p2	NM_021409|Pard6b|58220|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm9_v1_chr4_+_154937914_154937943	2.42858	bHLH_family.p2	NM_001159637|Nadk|192185|NAD kinase	AK170608|Nadk|192185|NAD kinase	AK165510|Nadk|192185|NAD kinase	AK170095|Nadk|192185|NAD kinase	AK170960|Nadk|192185|NAD kinase
mm9_v1_chr6_-_100237390_100237463	2.42537	bHLH_family.p2	AK033024|Rybp|56353|RING1 and YY1 binding protein	AF101779|Rybp|56353|RING1 and YY1 binding protein	BC080287|Rybp|56353|RING1 and YY1 binding protein
mm9_v1_chr1_-_38186482_38186550	2.41842	bHLH_family.p2	BC058093|Rev1|56210|REV1 homolog (S. cerevisiae)	NM_019570|Rev1|56210|REV1 homolog (S. cerevisiae)	AK048838|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr10_-_85379640_85379767	2.41734	bHLH_family.p2	AK028414|Prdm4|72843|PR domain containing 4	NM_181650|Prdm4|72843|PR domain containing 4
mm9_v1_chr5_+_115994255_115994483	2.41213	bHLH_family.p2	AF293883|Pxn|19303|paxillin	AK191714|Pxn|19303|paxillin	AK209978|Pxn|19303|paxillin
mm9_v1_chr15_+_81494352_81494363	2.41039	bHLH_family.p2	AK146632|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr9_-_103267226_103267309	2.40629	bHLH_family.p2	AK172053|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC031362|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_001134427|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK048941|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr10_+_82092582_82092692	2.40369	bHLH_family.p2	NM_011561|Tdg|21665|thymine DNA glycosylase	NM_172552|Tdg|21665|thymine DNA glycosylase	AK089915|Gm9855|624784|thymine DNA glycosylase pseudogene	BC085471|Tdg|21665|thymine DNA glycosylase	AK164643|Tdg|21665|thymine DNA glycosylase	AK166357|Tdg|21665|thymine DNA glycosylase	AK164090|Tdg|21665|thymine DNA glycosylase	AF069519|Gm9855|624784|thymine DNA glycosylase pseudogene	BC085470|Tdg|21665|thymine DNA glycosylase	AK053870|Tdg|21665|thymine DNA glycosylase	AK169768|Tdg|21665|thymine DNA glycosylase	BC010315|Tdg|21665|thymine DNA glycosylase
mm9_v1_chr5_+_116010796_116010949	2.39729	bHLH_family.p2	BC030189|Rplp0|11837|ribosomal protein, large, P0	AK193996|Rplp0|11837|ribosomal protein, large, P0	AK205179|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr17_-_85190113_85190128	2.39666	bHLH_family.p2	NM_028233|Lrpprc|72416|leucine-rich PPR-motif containing	AK138527|Lrpprc|72416|leucine-rich PPR-motif containing
mm9_v1_chr19_-_33466561_33466800	2.3954	bHLH_family.p2	DQ788834|Rnls|67795|renalase, FAD-dependent amine oxidase	BC052355|Rnls|67795|renalase, FAD-dependent amine oxidase	AK014866|Rnls|67795|renalase, FAD-dependent amine oxidase	AK018322|Rnls|67795|renalase, FAD-dependent amine oxidase	AK170321|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001146342|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001167818|Rnls|67795|renalase, FAD-dependent amine oxidase
mm9_v1_chr19_+_56948738_56948999	2.39323	bHLH_family.p2	AK145058|Vwa2|240675|von Willebrand factor A domain containing 2	AK166339|Vwa2|240675|von Willebrand factor A domain containing 2	AK160971|Vwa2|240675|von Willebrand factor A domain containing 2	AJ536329|Vwa2|240675|von Willebrand factor A domain containing 2	NM_172840|Vwa2|240675|von Willebrand factor A domain containing 2	BC116636|Vwa2|240675|von Willebrand factor A domain containing 2	BC115868|Vwa2|240675|von Willebrand factor A domain containing 2	AK029297|Vwa2|240675|von Willebrand factor A domain containing 2	AK133486|Vwa2|240675|von Willebrand factor A domain containing 2
mm9_v1_chr6_+_124662272_124662375	2.38878	bHLH_family.p2	AK158423|Phb2|12034|prohibitin 2	NM_007531|Phb2|12034|prohibitin 2	AK151952|Phb2|12034|prohibitin 2	AK152375|Phb2|12034|prohibitin 2	AK153368|Phb2|12034|prohibitin 2	AK132058|Phb2|12034|prohibitin 2	AK002334|Phb2|12034|prohibitin 2	AK011107|Phb2|12034|prohibitin 2	AK132052|Phb2|12034|prohibitin 2	AY211613|Phb2|12034|prohibitin 2	X78683|Phb2|12034|prohibitin 2	AK090088|Phb2|12034|prohibitin 2	BC145875|Phb2|12034|prohibitin 2
mm9_v1_chr3_-_130412360_130412367	2.38638	bHLH_family.p2	NM_025509|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chr7_+_86058650_86058744	2.38435	bHLH_family.p2	NM_020583|Isg20|57444|interferon-stimulated protein	BC022751|Isg20|57444|interferon-stimulated protein	AK136756|Isg20|57444|interferon-stimulated protein
mm9_v1_chrX_-_151772899_151773055	2.38282	bHLH_family.p2	AK014651|Prdx4|53381|peroxiredoxin 4	AK029349|Prdx4|53381|peroxiredoxin 4	BC003349|Prdx4|53381|peroxiredoxin 4	AK005031|Prdx4|53381|peroxiredoxin 4	AK015920|Prdx4|53381|peroxiredoxin 4	AK152255|Prdx4|53381|peroxiredoxin 4	AK146402|Prdx4|53381|peroxiredoxin 4	NM_016764|Prdx4|53381|peroxiredoxin 4	U96746|Prdx4|53381|peroxiredoxin 4	BC019578|Prdx4|53381|peroxiredoxin 4	AK157829|Prdx4|53381|peroxiredoxin 4	AK165551|Prdx4|53381|peroxiredoxin 4
mm9_v1_chr11_+_11586215_11586246	2.38238	bHLH_family.p2	NM_001025597|Ikzf1|22778|IKAROS family zinc finger 1	NM_009578|Ikzf1|22778|IKAROS family zinc finger 1	AK036833|Ikzf1|22778|IKAROS family zinc finger 1	AK040268|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr8_-_126544907_126544994	2.37962	bHLH_family.p2	AK033477|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr18_+_60685851_60685863	2.37515	bHLH_family.p2	AK163240|Dctn4|67665|dynactin 4
mm9_v1_chr19_-_24299389_24299452	2.3751	bHLH_family.p2	AK028494|Tjp2|21873|tight junction protein 2
mm9_v1_chr15_-_10415578_10415691	2.37349	bHLH_family.p2	AK002985|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	BC014832|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	AK168325|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	AK088313|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	NM_026396|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)
mm9_v1_chr2_-_35960774_35960927	2.37193	bHLH_family.p2	AK090339|Lhx6|16874|LIM homeobox protein 6	AJ000337|Lhx6|16874|LIM homeobox protein 6	AK140987|Lhx6|16874|LIM homeobox protein 6	NM_001083125|Lhx6|16874|LIM homeobox protein 6	NM_008500|Lhx6|16874|LIM homeobox protein 6
mm9_v1_chr3_-_157686385_157686385	2.37008	bHLH_family.p2	NM_026989|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr4_-_132313025_132313152	2.36823	bHLH_family.p2	AK166253|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	BC009087|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	NM_133888|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	AK154599|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B
mm9_v1_chr17_-_33918179_33918224	2.36674	bHLH_family.p2	AK009161|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr9_-_13631343_13631398	2.36537	bHLH_family.p2	AY225093|Cep57|74360|centrosomal protein 57	AK028458|Cep57|74360|centrosomal protein 57	AK028408|Cep57|74360|centrosomal protein 57
mm9_v1_chr15_-_76487319_76487388	2.36488	bHLH_family.p2	BC062184|Cyhr1|54151|cysteine and histidine rich 1	BC082772|Cyhr1|54151|cysteine and histidine rich 1	AK080867|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr7_+_134005943_134005961	2.36444	bHLH_family.p2	AK135526|Hirip3|233876|HIRA interacting protein 3	AK045122|Hirip3|233876|HIRA interacting protein 3	AK161657|Hirip3|233876|HIRA interacting protein 3
mm9_v1_chr11_-_31270060_31270077	2.36392	bHLH_family.p2	AF031035|Stc2|20856|stanniocalcin 2	NM_011491|Stc2|20856|stanniocalcin 2
mm9_v1_chr8_-_42459932_42460052	2.3631	bHLH_family.p2	AK150567|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK151312|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK152811|Asah1|11886|N-acylsphingosine amidohydrolase 1	BC003204|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK153297|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK075666|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK159556|Asah1|11886|N-acylsphingosine amidohydrolase 1	AF157500|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK166757|Asah1|11886|N-acylsphingosine amidohydrolase 1	AF352179|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK090314|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK075919|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK077721|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK152305|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK152920|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK153101|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK151478|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK151208|Asah1|11886|N-acylsphingosine amidohydrolase 1	NM_019734|Asah1|11886|N-acylsphingosine amidohydrolase 1
mm9_v1_chr10_+_83006673_83006768	2.36289	bHLH_family.p2	NM_001033375|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK145000|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK166233|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK043911|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK038582|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene
mm9_v1_chr3_+_88981372_88981433	2.36268	bHLH_family.p2	AK146204|Scamp3|24045|secretory carrier membrane protein 3	NM_011886|Scamp3|24045|secretory carrier membrane protein 3	BC002021|Scamp3|24045|secretory carrier membrane protein 3	AK160549|Scamp3|24045|secretory carrier membrane protein 3	AK135335|Scamp3|24045|secretory carrier membrane protein 3
mm9_v1_chr19_+_8945985_8946174	2.35978	bHLH_family.p2	AK172428|Ubxn1|225896|UBX domain protein 1	BC006701|Ubxn1|225896|UBX domain protein 1	NM_146093|Ubxn1|225896|UBX domain protein 1	AK015468|Ubxn1|225896|UBX domain protein 1	AK150442|Ubxn1|225896|UBX domain protein 1	AK159708|Ubxn1|225896|UBX domain protein 1
mm9_v1_chr6_-_72185570_72185570	2.35903	bHLH_family.p2	AB046527|Atoh8|71093|atonal homolog 8 (Drosophila)	NM_153778|Atoh8|71093|atonal homolog 8 (Drosophila)
mm9_v1_chr3_-_108029499_108029565	2.35668	bHLH_family.p2	BC030038|Sypl2|17306|synaptophysin-like 2	AB010140|Sypl2|17306|synaptophysin-like 2	NM_008596|Sypl2|17306|synaptophysin-like 2	AK082471|Sypl2|17306|synaptophysin-like 2	AK162663|Sypl2|17306|synaptophysin-like 2	AK052749|Sypl2|17306|synaptophysin-like 2	AK083422|Sypl2|17306|synaptophysin-like 2
mm9_v1_chr8_+_87561055_87561132	2.35579	bHLH_family.p2	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr2_+_170111212_170111359	2.354	bHLH_family.p2	
mm9_v1_chr4_+_32744074_32744093	2.35384	bHLH_family.p2	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chr1_-_121318824_121318824	2.35375	bHLH_family.p2	AK132352|Inhbb|16324|inhibin beta-B	NM_008381|Inhbb|16324|inhibin beta-B
mm9_v1_chr7_-_51780003_51780038	2.35326	bHLH_family.p2	BC039184|Mybpc2|233199|myosin binding protein C, fast-type	BC029762|Mybpc2|233199|myosin binding protein C, fast-type	AK029282|Mybpc2|233199|myosin binding protein C, fast-type	AK132563|Mybpc2|233199|myosin binding protein C, fast-type	AK161146|Mybpc2|233199|myosin binding protein C, fast-type	NM_146189|Mybpc2|233199|myosin binding protein C, fast-type
mm9_v1_chr14_-_55272452_55272539	2.35046	bHLH_family.p2	AF124725|Acin1|56215|apoptotic chromatin condensation inducer 1	AF124729|Acin1|56215|apoptotic chromatin condensation inducer 1	BC019127|Acin1|56215|apoptotic chromatin condensation inducer 1	BC094217|Acin1|56215|apoptotic chromatin condensation inducer 1	NM_019567|Acin1|56215|apoptotic chromatin condensation inducer 1	AK012099|Acin1|56215|apoptotic chromatin condensation inducer 1	NM_001085472|Acin1|56215|apoptotic chromatin condensation inducer 1
mm9_v1_chr5_+_74489078_74489151	2.34989	bHLH_family.p2	AK045300|2700023E23Rik|70036|RIKEN cDNA 2700023E23 gene	AK172090|2700023E23Rik|70036|RIKEN cDNA 2700023E23 gene	AK012278|2700023E23Rik|70036|RIKEN cDNA 2700023E23 gene	AK172703|2700023E23Rik|70036|RIKEN cDNA 2700023E23 gene
mm9_v1_chr1_+_154597680_154597706	2.34834	bHLH_family.p2	BC100465|Apobec4|71281|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	NM_001081197|Apobec4|71281|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	AK017014|Apobec4|71281|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm9_v1_chr10_+_121176978_121177017	2.34792	bHLH_family.p2	BC065058|BC048403|270802|cDNA sequence BC048403	NM_173022|BC048403|270802|cDNA sequence BC048403	AK166238|BC048403|270802|cDNA sequence BC048403	AK138662|BC048403|270802|cDNA sequence BC048403	AK162911|BC048403|270802|cDNA sequence BC048403	AK087110|BC048403|270802|cDNA sequence BC048403	AK169891|BC048403|270802|cDNA sequence BC048403
mm9_v1_chr2_+_92215590_92215711	2.34524	bHLH_family.p2	BC010822|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr11_+_102291635_102291708	2.34301	bHLH_family.p2	NM_008175|Grn|14824|granulin
mm9_v1_chr8_+_109127245_109127278	2.33681	bHLH_family.p2	AK076369|Cdh1|12550|cadherin 1	AK166267|Cdh1|12550|cadherin 1	NM_009864|Cdh1|12550|cadherin 1	BC098501|Cdh1|12550|cadherin 1
mm9_v1_chr17_-_53828547_53828590	2.33383	bHLH_family.p2	AB193067|Sgol1|72415|shugoshin-like 1 (S. pombe)	AB193068|Sgol1|72415|shugoshin-like 1 (S. pombe)	AK196456|Sgol1|72415|shugoshin-like 1 (S. pombe)
mm9_v1_chr4_+_46463917_46464167	2.32635	bHLH_family.p2	AK165807|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC003489|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC005628|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	NM_130889|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC093506|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	AK136648|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	AB025582|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
mm9_v1_chr9_-_63868311_63868311	2.32584	bHLH_family.p2	AK004671|Smad6|17130|MAD homolog 6 (Drosophila)
mm9_v1_chr2_+_24831667_24831768	2.32447	bHLH_family.p2	AK038505|Pnpla7|241274|patatin-like phospholipase domain containing 7	BC141365|Pnpla7|241274|patatin-like phospholipase domain containing 7	BC141366|Pnpla7|241274|patatin-like phospholipase domain containing 7
mm9_v1_chr13_+_73468441_73468488	2.31932	bHLH_family.p2	AK160778|Mrpl36|94066|mitochondrial ribosomal protein L36	BC009166|Mrpl36|94066|mitochondrial ribosomal protein L36	NM_053163|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131597|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131601|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131604|Mrpl36|94066|mitochondrial ribosomal protein L36	AK075780|Mrpl36|94066|mitochondrial ribosomal protein L36	AB049655|Mrpl36|94066|mitochondrial ribosomal protein L36
mm9_v1_chr9_-_53475563_53475590	2.31631	bHLH_family.p2	BC019661|Cul5|75717|cullin 5	AK046030|Cul5|75717|cullin 5
mm9_v1_chr13_+_73397944_73397944	2.3118	bHLH_family.p2	AK132571|Irx4|50916|Iroquois related homeobox 4 (Drosophila)	NM_018885|Irx4|50916|Iroquois related homeobox 4 (Drosophila)
mm9_v1_chr18_-_66162268_66162297	2.31017	bHLH_family.p2	AK170799|Lman1|70361|lectin, mannose-binding, 1	AK011495|Lman1|70361|lectin, mannose-binding, 1	AK151599|Lman1|70361|lectin, mannose-binding, 1	AK151949|Lman1|70361|lectin, mannose-binding, 1	AK153554|Lman1|70361|lectin, mannose-binding, 1	NM_001172062|Lman1|70361|lectin, mannose-binding, 1	NM_027400|Lman1|70361|lectin, mannose-binding, 1
mm9_v1_chr14_-_104921839_104921882	2.30942	bHLH_family.p2	BC029231|Rnf219|72486|ring finger protein 219	AK020974|Rnf219|72486|ring finger protein 219	AK013314|Rnf219|72486|ring finger protein 219	NM_026047|Rnf219|72486|ring finger protein 219
mm9_v1_chr8_+_13757654_13757836	2.30837	bHLH_family.p2	AK147938|Cdc16|69957|CDC16 cell division cycle 16 homolog (S. cerevisiae)	AK167965|Cdc16|69957|CDC16 cell division cycle 16 homolog (S. cerevisiae)	AK158014|Cdc16|69957|CDC16 cell division cycle 16 homolog (S. cerevisiae)	BC026606|Cdc16|69957|CDC16 cell division cycle 16 homolog (S. cerevisiae)	NM_027276|Cdc16|69957|CDC16 cell division cycle 16 homolog (S. cerevisiae)	AK168978|Cdc16|69957|CDC16 cell division cycle 16 homolog (S. cerevisiae)
mm9_v1_chr5_+_139626176_139626194	2.30478	bHLH_family.p2	NM_001081265|Heatr2|433956|HEAT repeat containing 2	BC147492|Heatr2|433956|HEAT repeat containing 2	BC158066|Heatr2|433956|HEAT repeat containing 2
mm9_v1_chr11_-_60230506_60230604	2.30453	bHLH_family.p2	BC013607|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2	AK078500|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2	NM_145427|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2
mm9_v1_chr7_+_117265568_117265624	2.30231	bHLH_family.p2	NM_009516|Wee1|22390|WEE 1 homolog 1 (S. pombe)	BC006852|Wee1|22390|WEE 1 homolog 1 (S. pombe)	D30743|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr11_-_70817905_70817971	2.30095	bHLH_family.p2	BC027842|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	BC052172|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK035177|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	NM_178367|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK087592|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33
mm9_v1_chr7_+_19735155_19735219	2.30086	bHLH_family.p2	BC043014|Snrpd2|107686|small nuclear ribonucleoprotein D2	NM_026943|Snrpd2|107686|small nuclear ribonucleoprotein D2	BC116858|Snrpd2|107686|small nuclear ribonucleoprotein D2	BC116860|Snrpd2|107686|small nuclear ribonucleoprotein D2	AK007389|Snrpd2|107686|small nuclear ribonucleoprotein D2	AK088105|Snrpd2|107686|small nuclear ribonucleoprotein D2	AK045968|Snrpd2|107686|small nuclear ribonucleoprotein D2	BC051208|Snrpd2|107686|small nuclear ribonucleoprotein D2
mm9_v1_chr16_-_92826239_92826287	2.30004	bHLH_family.p2	BC069929|Runx1|12394|runt related transcription factor 1	AK137493|Runx1|12394|runt related transcription factor 1
mm9_v1_chr14_-_56254424_56254541	2.29933	bHLH_family.p2	AK202276|Ipo4|75751|importin 4	AF123388|Ipo4|75751|importin 4	AK018399|Ipo4|75751|importin 4	AK147086|Ipo4|75751|importin 4	AK142138|Ipo4|75751|importin 4	BC075690|Ipo4|75751|importin 4	AK171031|Ipo4|75751|importin 4	NM_024267|Ipo4|75751|importin 4	AK030490|Ipo4|75751|importin 4
mm9_v1_chr2_+_33071451_33071671	2.2973	bHLH_family.p2	AK155464|Angptl2|26360|angiopoietin-like 2	NM_011923|Angptl2|26360|angiopoietin-like 2	AK037265|Angptl2|26360|angiopoietin-like 2	AK011976|Angptl2|26360|angiopoietin-like 2	BC138609|Angptl2|26360|angiopoietin-like 2	BC138610|Angptl2|26360|angiopoietin-like 2
mm9_v1_chr17_+_46909737_46909786	2.29543	bHLH_family.p2	AK009696|2310039H08Rik|67101|RIKEN cDNA 2310039H08 gene	AK003321|2310039H08Rik|67101|RIKEN cDNA 2310039H08 gene
mm9_v1_chr3_-_68848657_68848670	2.29472	bHLH_family.p2	AK012269|Trim59|66949|tripartite motif-containing 59	NM_025863|Trim59|66949|tripartite motif-containing 59
mm9_v1_chr19_+_4125894_4126113	2.28845	bHLH_family.p2	AK009263|Tmem134|66990|transmembrane protein 134	AK010323|Tmem134|66990|transmembrane protein 134	AK166519|Tmem134|66990|transmembrane protein 134	NM_001078649|Tmem134|66990|transmembrane protein 134	NM_025889|Tmem134|66990|transmembrane protein 134	AK002220|Tmem134|66990|transmembrane protein 134	BC026765|Tmem134|66990|transmembrane protein 134	AK009745|Tmem134|66990|transmembrane protein 134	AK129014|Tmem134|66990|transmembrane protein 134	AK008515|Tmem134|66990|transmembrane protein 134
mm9_v1_chr12_-_77810949_77811009	2.28711	bHLH_family.p2	S66283|Spnb1|20741|spectrin beta 1
mm9_v1_chr11_-_101645834_101645863	2.28387	bHLH_family.p2	DQ832277|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr13_+_73398198_73398306	2.28344	bHLH_family.p2	AF124732|Irx4|50916|Iroquois related homeobox 4 (Drosophila)	BC126942|Irx4|50916|Iroquois related homeobox 4 (Drosophila)
mm9_v1_chr9_+_119311561_119311618	2.27689	bHLH_family.p2	BC106189|Acvr2b|11481|activin receptor IIB	M84120|Acvr2b|11481|activin receptor IIB	NM_007397|Acvr2b|11481|activin receptor IIB
mm9_v1_chr7_+_88202481_88202485	2.27633	bHLH_family.p2	AF338872|Alpk3|116904|alpha-kinase 3	NM_054085|Alpk3|116904|alpha-kinase 3
mm9_v1_chr11_+_117193738_117193767	2.2754	bHLH_family.p2	AK164581|Sept9|53860|septin 9	AK031757|Sept9|53860|septin 9
mm9_v1_chr4_+_120712170_120712207	2.26877	bHLH_family.p2	NM_007741|Col9a2|12840|collagen, type IX, alpha 2
mm9_v1_chr8_-_125135240_125135386	2.26533	bHLH_family.p2	BC004002|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK220245|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK033946|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AF111346|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK159592|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	NM_001193645|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	NM_016722|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase
mm9_v1_chr16_-_35490849_35490973	2.2646	bHLH_family.p2	BC009151|Pdia5|72599|protein disulfide isomerase associated 5	NM_028295|Pdia5|72599|protein disulfide isomerase associated 5
mm9_v1_chr15_-_75839859_75839950	2.25781	bHLH_family.p2	AK030392|Fam83h|105732|family with sequence similarity 83, member H	NM_001168253|Fam83h|105732|family with sequence similarity 83, member H
mm9_v1_chr9_-_110526866_110526924	2.25168	bHLH_family.p2	BC039808|Nradd|67169|neurotrophin receptor associated death domain	AK160222|Nradd|67169|neurotrophin receptor associated death domain	BC069856|Nradd|67169|neurotrophin receptor associated death domain	NM_026012|Nradd|67169|neurotrophin receptor associated death domain
mm9_v1_chr15_-_102076706_102076930	2.2505	bHLH_family.p2	M34475|Rarg|19411|retinoic acid receptor, gamma	AK155911|Rarg|19411|retinoic acid receptor, gamma	NM_001042727|Rarg|19411|retinoic acid receptor, gamma	M32069|Rarg|19411|retinoic acid receptor, gamma
mm9_v1_chr10_+_79611013_79611064	2.24546	bHLH_family.p2	AK164324|Midn|59090|midnolin	AK164651|Midn|59090|midnolin	AB036882|Midn|59090|midnolin	NM_021565|Midn|59090|midnolin	BC034719|Midn|59090|midnolin
mm9_v1_chr13_+_5860749_5860918	2.24148	bHLH_family.p2	AK147904|Klf6|23849|Kruppel-like factor 6	AK053584|Klf6|23849|Kruppel-like factor 6	AK146615|Klf6|23849|Kruppel-like factor 6	BC020042|Klf6|23849|Kruppel-like factor 6	AK159420|Klf6|23849|Kruppel-like factor 6	AK144137|Klf6|23849|Kruppel-like factor 6	AK151769|Klf6|23849|Kruppel-like factor 6	AF072403|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr1_+_90062617_90062631	2.23509	bHLH_family.p2	AB094481|Ugt1a5|394433|UDP glucuronosyltransferase 1 family, polypeptide A5
mm9_v1_chr16_-_16869309_16869347	2.23041	bHLH_family.p2	BC117051|Vpreb1|22362|pre-B lymphocyte gene 1	BC119175|Vpreb1|22362|pre-B lymphocyte gene 1	BC144850|Vpreb1|22362|pre-B lymphocyte gene 1	AK010843|Vpreb1|22362|pre-B lymphocyte gene 1	AK010879|Vpreb1|22362|pre-B lymphocyte gene 1	X05556|Vpreb1|22362|pre-B lymphocyte gene 1	NM_016982|Vpreb1|22362|pre-B lymphocyte gene 1
mm9_v1_chr7_-_31514445_31514522	2.22873	bHLH_family.p2	AK008089|Tmem147|69804|transmembrane protein 147	AK007753|Tmem147|69804|transmembrane protein 147	BC147300|Tmem147|69804|transmembrane protein 147	BC147301|Tmem147|69804|transmembrane protein 147
mm9_v1_chr11_+_69812965_69813148	2.22335	bHLH_family.p2	Y17676|Phf23|78246|PHD finger protein 23
mm9_v1_chr2_-_154395076_154395154	2.21861	bHLH_family.p2	AK017841|E2f1|13555|E2F transcription factor 1
mm9_v1_chr4_+_118100682_118100801	2.21788	bHLH_family.p2	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr3_-_142058595_142058659	2.21712	bHLH_family.p2	AK147999|Pdlim5|56376|PDZ and LIM domain 5	AK003194|Pdlim5|56376|PDZ and LIM domain 5	AK089779|Pdlim5|56376|PDZ and LIM domain 5	NM_001190852|Pdlim5|56376|PDZ and LIM domain 5	NM_001190853|Pdlim5|56376|PDZ and LIM domain 5	NM_001190854|Pdlim5|56376|PDZ and LIM domain 5	NM_001190855|Pdlim5|56376|PDZ and LIM domain 5	NM_001190856|Pdlim5|56376|PDZ and LIM domain 5	NM_019808|Pdlim5|56376|PDZ and LIM domain 5	NM_019809|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr10_+_34018323_34018472	2.21712	bHLH_family.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr6_-_119338677_119338775	2.21075	bHLH_family.p2	AK148295|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr1_-_137001804_137001852	2.20927	bHLH_family.p2	BC141210|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	AK085901|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	AK137380|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	NM_001033409|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6
mm9_v1_chr10_-_75236102_75236123	2.20648	bHLH_family.p2	BC010753|Ddt|13202|D-dopachrome tautomerase	NM_010027|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr15_+_103103286_103103332	2.20563	bHLH_family.p2	AK083824|Copz1|56447|coatomer protein complex, subunit zeta 1	AK168382|Copz1|56447|coatomer protein complex, subunit zeta 1	AK168471|Copz1|56447|coatomer protein complex, subunit zeta 1	AK079205|Copz1|56447|coatomer protein complex, subunit zeta 1	AK156758|Copz1|56447|coatomer protein complex, subunit zeta 1
mm9_v1_chr10_-_77927652_77927763	2.20427	bHLH_family.p2	BC032171|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK145470|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166464|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK080846|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK039194|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166078|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	NM_172134|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	BC027745|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase
mm9_v1_chr9_-_53475591_53475593	2.20149	bHLH_family.p2	AK018437|Cul5|75717|cullin 5
mm9_v1_chr7_-_19985204_19985226	2.1991	bHLH_family.p2	BC017147|Klc3|232943|kinesin light chain 3	NM_146182|Klc3|232943|kinesin light chain 3	BC020422|Klc3|232943|kinesin light chain 3
mm9_v1_chr15_-_76028594_76028638	2.19729	bHLH_family.p2	AF188020|Plec|18810|plectin	AY480042|Plec|18810|plectin	NM_201393|Plec|18810|plectin
mm9_v1_chr7_+_89797101_89797158	2.19696	bHLH_family.p2	NM_001159672|Eftud1|101592|elongation factor Tu GTP binding domain containing 1	NM_175317|Eftud1|101592|elongation factor Tu GTP binding domain containing 1	AK031647|Eftud1|101592|elongation factor Tu GTP binding domain containing 1	AK049698|Eftud1|101592|elongation factor Tu GTP binding domain containing 1	BC045616|Eftud1|101592|elongation factor Tu GTP binding domain containing 1	AK028676|Eftud1|101592|elongation factor Tu GTP binding domain containing 1
mm9_v1_chr2_-_130985746_130985825	2.19486	bHLH_family.p2	AK003406|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	NM_026091|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	BC071212|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	AK006622|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene
mm9_v1_chr5_-_138086925_138086941	2.18787	bHLH_family.p2	AK040947|Irs3|16369|insulin receptor substrate 3	AK030311|Irs3|16369|insulin receptor substrate 3	NM_010571|Irs3|16369|insulin receptor substrate 3
mm9_v1_chr1_+_157887985_157888091	2.187	bHLH_family.p2	NM_001160181|Tor1aip2|240832|torsin A interacting protein 2	NM_022329|Tor1aip2|240832|torsin A interacting protein 2	AK152137|Tor1aip2|240832|torsin A interacting protein 2	AK080959|Tor1aip2|240832|torsin A interacting protein 2	AK150303|Tor1aip2|240832|torsin A interacting protein 2	AK151453|Tor1aip2|240832|torsin A interacting protein 2	AJ251363|Tor1aip2|240832|torsin A interacting protein 2	BC064017|Tor1aip2|240832|torsin A interacting protein 2	BC092059|Tor1aip2|240832|torsin A interacting protein 2	AK216254|Tor1aip2|240832|torsin A interacting protein 2	BC039927|Tor1aip2|240832|torsin A interacting protein 2	AK003852|Tor1aip2|240832|torsin A interacting protein 2	AK032697|Tor1aip2|240832|torsin A interacting protein 2	BC053726|Tor1aip2|240832|torsin A interacting protein 2	AK182358|Tor1aip2|240832|torsin A interacting protein 2	AK203799|Tor1aip2|240832|torsin A interacting protein 2	AK212068|Tor1aip2|240832|torsin A interacting protein 2	AK212760|Tor1aip2|240832|torsin A interacting protein 2	AK214292|Tor1aip2|240832|torsin A interacting protein 2	AK218632|Tor1aip2|240832|torsin A interacting protein 2	AK219881|Tor1aip2|240832|torsin A interacting protein 2	AK177027|Tor1aip2|240832|torsin A interacting protein 2
mm9_v1_chr1_-_163181313_163181346	2.18604	bHLH_family.p2	AK157820|Prdx6|11758|peroxiredoxin 6	Y12883|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr3_-_107949028_107949092	2.18079	bHLH_family.p2	AK077490|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	NM_010306|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	BC020009|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK169285|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK004566|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm9_v1_chr1_-_138856866_138857085	2.18019	bHLH_family.p2	AB221629|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	BC137845|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	M81385|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2	NM_030676|Nr5a2|26424|nuclear receptor subfamily 5, group A, member 2
mm9_v1_chr11_-_50105794_50105864	2.17945	bHLH_family.p2	AY442299|Maml1|103806|mastermind like 1 (Drosophila)	AK129088|Maml1|103806|mastermind like 1 (Drosophila)	NM_175334|Maml1|103806|mastermind like 1 (Drosophila)
mm9_v1_chr19_+_43764161_43764183	2.1793	bHLH_family.p2	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr3_-_107135939_107136206	2.17832	bHLH_family.p2	BC080828|Rbm15|229700|RNA binding motif protein 15	AK048987|Rbm15|229700|RNA binding motif protein 15	BC051409|Rbm15|229700|RNA binding motif protein 15	AK168242|Rbm15|229700|RNA binding motif protein 15	AK166271|Rbm15|229700|RNA binding motif protein 15	BC057038|Rbm15|229700|RNA binding motif protein 15	AK220162|Rbm15|229700|RNA binding motif protein 15	AK168936|Rbm15|229700|RNA binding motif protein 15	BC120590|Rbm15|229700|RNA binding motif protein 15	BC137741|Rbm15|229700|RNA binding motif protein 15	NM_001045807|Rbm15|229700|RNA binding motif protein 15
mm9_v1_chr3_-_142058569_142058593	2.17753	bHLH_family.p2	AK009464|Pdlim5|56376|PDZ and LIM domain 5	AB016586|Pdlim5|56376|PDZ and LIM domain 5	AB016588|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr4_-_133523750_133523927	2.17411	bHLH_family.p2	X12944|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC084680|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090837|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC092060|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC083085|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090836|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC103792|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK078413|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK002374|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK151383|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK152857|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK153881|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK169050|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146285|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146999|Hmgn2|15331|high mobility group nucleosomal binding domain 2	NM_016957|Hmgn2|15331|high mobility group nucleosomal binding domain 2
mm9_v1_chr18_-_14131046_14131241	2.17215	bHLH_family.p2	BC021376|Zfp521|225207|zinc finger protein 521	AK052655|Zfp521|225207|zinc finger protein 521	AY147406|Zfp521|225207|zinc finger protein 521	NM_145492|Zfp521|225207|zinc finger protein 521
mm9_v1_chr15_-_43114220_43114328	2.17191	bHLH_family.p2	BC029177|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	U54563|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK011436|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK161650|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK146936|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK002576|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK165929|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK088269|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK088104|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	AK145059|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	BC010252|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E	NM_008388|Eif3e|16341|eukaryotic translation initiation factor 3, subunit E
mm9_v1_chr11_-_69828831_69828933	2.17099	bHLH_family.p2	Z71189|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	AK076037|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	BC026559|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	NM_017366|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain
mm9_v1_chr6_+_57531124_57531158	2.16912	bHLH_family.p2	AK017888|Herc6|67138|hect domain and RLD 6
mm9_v1_chr4_+_133130651_133130679	2.16485	bHLH_family.p2	AK050179|Gpatch3|242691|G patch domain containing 3	AK053051|Gpatch3|242691|G patch domain containing 3	BC121828|Gpatch3|242691|G patch domain containing 3	BC121829|Gpatch3|242691|G patch domain containing 3	NM_172876|Gpatch3|242691|G patch domain containing 3	BC096468|Gpatch3|242691|G patch domain containing 3
mm9_v1_chr11_+_120809797_120809809	2.16371	bHLH_family.p2	BC046525|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	NM_030696|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3
mm9_v1_chr2_+_84679564_84679595	2.16225	bHLH_family.p2	NM_001081349|Slc43a1|72401|solute carrier family 43, member 1	AK011417|Slc43a1|72401|solute carrier family 43, member 1	AK046758|Slc43a1|72401|solute carrier family 43, member 1	AK165374|Slc43a1|72401|solute carrier family 43, member 1	AB103034|Slc43a1|72401|solute carrier family 43, member 1
mm9_v1_chr10_+_80639393_80639464	2.1606	bHLH_family.p2	AK146947|Eef2|13629|eukaryotic translation elongation factor 2	AK169013|Eef2|13629|eukaryotic translation elongation factor 2	AK028938|Eef2|13629|eukaryotic translation elongation factor 2	AK168874|Eef2|13629|eukaryotic translation elongation factor 2	BC007152|Eef2|13629|eukaryotic translation elongation factor 2	BC013263|Eef2|13629|eukaryotic translation elongation factor 2	AK200555|Eef2|13629|eukaryotic translation elongation factor 2	AK151812|Eef2|13629|eukaryotic translation elongation factor 2	AK185912|Eef2|13629|eukaryotic translation elongation factor 2	AK214133|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr9_-_96264446_96264498	2.15704	bHLH_family.p2	AK196817|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr14_+_31832323_31832337	2.15362	bHLH_family.p2	AK165182|Pbrm1|66923|polybromo 1	NM_001081251|Pbrm1|66923|polybromo 1
mm9_v1_chr7_-_85992096_85992145	2.15209	bHLH_family.p2	BC031930|Det1|76375|de-etiolated homolog 1 (Arabidopsis)	NM_029585|Det1|76375|de-etiolated homolog 1 (Arabidopsis)	AK011666|Det1|76375|de-etiolated homolog 1 (Arabidopsis)
mm9_v1_chr11_+_100721765_100721860	2.15051	bHLH_family.p2	NM_001164062|Stat5a|20850|signal transducer and activator of transcription 5A	AK090254|Stat5a|20850|signal transducer and activator of transcription 5A	BC056647|Stat5a|20850|signal transducer and activator of transcription 5A	Z48538|Stat5a|20850|signal transducer and activator of transcription 5A	AY299491|Stat5a|20850|signal transducer and activator of transcription 5A	AY299492|Stat5a|20850|signal transducer and activator of transcription 5A	EU249543|Stat5a|20850|signal transducer and activator of transcription 5A	AK154070|Stat5a|20850|signal transducer and activator of transcription 5A	BC008998|Stat5a|20850|signal transducer and activator of transcription 5A
mm9_v1_chr9_-_50411898_50411953	2.15045	bHLH_family.p2	AK135970|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	BC145731|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	BC145733|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	AK013503|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	AK013962|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	NM_025848|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein
mm9_v1_chr19_+_5601857_5601905	2.15005	bHLH_family.p2	NM_026616|Rnaseh2c|68209|ribonuclease H2, subunit C	AF346604|Rnaseh2c|68209|ribonuclease H2, subunit C	AK018776|Rnaseh2c|68209|ribonuclease H2, subunit C	AK011556|Rnaseh2c|68209|ribonuclease H2, subunit C	BC024333|Rnaseh2c|68209|ribonuclease H2, subunit C
mm9_v1_chr14_+_70945429_70945513	2.14744	bHLH_family.p2	BC033929|Reep4|72549|receptor accessory protein 4	NM_180588|Reep4|72549|receptor accessory protein 4	AK187453|Reep4|72549|receptor accessory protein 4	AY562232|Reep4|72549|receptor accessory protein 4
mm9_v1_chr12_-_32635399_32635399	2.14509	bHLH_family.p2	AK133127|Hbp1|73389|high mobility group box transcription factor 1	NM_153198|Hbp1|73389|high mobility group box transcription factor 1	NM_177993|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr5_-_138721164_138721212	2.14381	bHLH_family.p2	AK049639|Gpc2|71951|glypican 2 (cerebroglycan)	NM_172412|Gpc2|71951|glypican 2 (cerebroglycan)	BC083180|Gpc2|71951|glypican 2 (cerebroglycan)	AK048605|Gpc2|71951|glypican 2 (cerebroglycan)	AK010515|Gpc2|71951|glypican 2 (cerebroglycan)	AK160959|Gpc2|71951|glypican 2 (cerebroglycan)	BC056941|Gpc2|71951|glypican 2 (cerebroglycan)
mm9_v1_chr17_+_56850731_56850957	2.14248	bHLH_family.p2	AK204937|Ranbp3|71810|RAN binding protein 3
mm9_v1_chr5_+_64551449_64551546	2.1423	bHLH_family.p2	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr8_-_26127376_26127404	2.14224	bHLH_family.p2	AK122188|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	NM_007404|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr15_-_89204248_89204287	2.14182	bHLH_family.p2	BC019554|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	NM_001111288|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	AK013765|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)
mm9_v1_chr17_-_45710161_45710212	2.14132	bHLH_family.p2	AK184233|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK191250|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK194406|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK195161|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK195294|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK196279|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK196368|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK197826|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK198614|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK216006|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK146809|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	M36829|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	BC002167|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	BC088985|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	M18186|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AF465639|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	NM_008302|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr5_+_116081897_116082155	2.14074	bHLH_family.p2	BC056466|Rab35|77407|RAB35, member RAS oncogene family	NM_198163|Rab35|77407|RAB35, member RAS oncogene family	AK156576|Rab35|77407|RAB35, member RAS oncogene family	AB232631|Rab35|77407|RAB35, member RAS oncogene family
mm9_v1_chr15_+_103103335_103103351	2.13907	bHLH_family.p2	BC085314|Copz1|56447|coatomer protein complex, subunit zeta 1	AK003302|Copz1|56447|coatomer protein complex, subunit zeta 1	AK167636|Copz1|56447|coatomer protein complex, subunit zeta 1	BC002246|Copz1|56447|coatomer protein complex, subunit zeta 1	BC025041|Copz1|56447|coatomer protein complex, subunit zeta 1	BC039920|Copz1|56447|coatomer protein complex, subunit zeta 1	BC062203|Copz1|56447|coatomer protein complex, subunit zeta 1	AB037370|Copz1|56447|coatomer protein complex, subunit zeta 1	NM_019817|Copz1|56447|coatomer protein complex, subunit zeta 1	BC052891|Copz1|56447|coatomer protein complex, subunit zeta 1	BC058524|Copz1|56447|coatomer protein complex, subunit zeta 1
mm9_v1_chr5_+_137960107_137960139	2.13875	bHLH_family.p2	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr11_-_77979070_77979090	2.13781	bHLH_family.p2	AK046015|Traf4|22032|TNF receptor associated factor 4
mm9_v1_chr9_+_60642248_60642431	2.13778	bHLH_family.p2	AK148900|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	AK087466|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	BC042415|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	NM_028283|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	BC033470|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats
mm9_v1_chr4_-_132818988_132819001	2.13704	bHLH_family.p2	AK078868|Sytl1|269589|synaptotagmin-like 1	AK154176|Sytl1|269589|synaptotagmin-like 1	BC005623|Sytl1|269589|synaptotagmin-like 1	NM_031393|Sytl1|269589|synaptotagmin-like 1
mm9_v1_chr10_+_80639371_80639387	2.13551	bHLH_family.p2	NM_007907|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chrX_+_34335651_34335798	2.12924	bHLH_family.p2	BC004570|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	BC086756|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	U10404|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK188826|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK195999|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr3_+_102273849_102273853	2.12635	bHLH_family.p2	AK144588|Ngf|18049|nerve growth factor	NM_001112698|Ngf|18049|nerve growth factor	NM_013609|Ngf|18049|nerve growth factor	M35075|Ngf|18049|nerve growth factor	V00836|Ngf|18049|nerve growth factor
mm9_v1_chr11_+_34934995_34935016	2.12176	bHLH_family.p2	AF144629|Slit3|20564|slit homolog 3 (Drosophila)
mm9_v1_chr17_+_24857007_24857051	2.11268	bHLH_family.p2	NM_008503|Rps2|16898|ribosomal protein S2
mm9_v1_chr19_-_5424856_5425071	2.11186	bHLH_family.p2	BC002090|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	NM_024176|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	AK010152|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr13_+_38437584_38437664	2.10925	bHLH_family.p2	NM_007556|Bmp6|12161|bone morphogenetic protein 6	X80992|Bmp6|12161|bone morphogenetic protein 6	BC138593|Bmp6|12161|bone morphogenetic protein 6	BC138595|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr15_+_102865094_102865153	2.10389	bHLH_family.p2	D11329|Hoxc4|15423|homeobox C4	AB221549|Hoxc4|15423|homeobox C4
mm9_v1_chr19_-_34952328_34952347	2.10089	bHLH_family.p2	BC023496|Pank1|75735|pantothenate kinase 1
mm9_v1_chr10_-_117147068_117147083	2.1002	bHLH_family.p2	AK150530|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK152685|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK160069|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr5_-_114358647_114358779	2.09977	bHLH_family.p2	BC099671|Coro1c|23790|coronin, actin binding protein 1C	AK037801|Coro1c|23790|coronin, actin binding protein 1C	BC085498|Coro1c|23790|coronin, actin binding protein 1C	AF143957|Coro1c|23790|coronin, actin binding protein 1C	BC019444|Coro1c|23790|coronin, actin binding protein 1C	BC087553|Coro1c|23790|coronin, actin binding protein 1C	AK169262|Coro1c|23790|coronin, actin binding protein 1C	AK151017|Coro1c|23790|coronin, actin binding protein 1C	AK151749|Coro1c|23790|coronin, actin binding protein 1C	AK167089|Coro1c|23790|coronin, actin binding protein 1C	AK159506|Coro1c|23790|coronin, actin binding protein 1C	AK169404|Coro1c|23790|coronin, actin binding protein 1C	BC009126|Coro1c|23790|coronin, actin binding protein 1C	AK082986|Coro1c|23790|coronin, actin binding protein 1C	NM_011779|Coro1c|23790|coronin, actin binding protein 1C	AK088101|Coro1c|23790|coronin, actin binding protein 1C	AK077552|Coro1c|23790|coronin, actin binding protein 1C	AK079327|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr7_+_51251248_51251248	2.09822	bHLH_family.p2	BC013660|Klk1b11|16613|kallikrein 1-related peptidase b11	NM_010640|Klk1b11|16613|kallikrein 1-related peptidase b11
mm9_v1_chr4_-_138281162_138281179	2.09771	bHLH_family.p2	AK133185|Ubxn10|212190|UBX domain protein 10	AK161245|Ubxn10|212190|UBX domain protein 10	NM_178671|Ubxn10|212190|UBX domain protein 10	AK077656|Ubxn10|212190|UBX domain protein 10
mm9_v1_chr14_+_31832340_31832345	2.09538	bHLH_family.p2	AK166588|Pbrm1|66923|polybromo 1
mm9_v1_chr11_-_113427050_113427128	2.09186	bHLH_family.p2	AK192534|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK007986|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK170673|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK049368|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK036999|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	BC019647|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	BC031751|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	NM_001166503|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	NM_027216|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11
mm9_v1_chr10_+_80639388_80639392	2.08928	bHLH_family.p2	AK032997|Eef2|13629|eukaryotic translation elongation factor 2	AK040474|Eef2|13629|eukaryotic translation elongation factor 2	AK077866|Eef2|13629|eukaryotic translation elongation factor 2	AK087985|Eef2|13629|eukaryotic translation elongation factor 2	AK128976|Eef2|13629|eukaryotic translation elongation factor 2	AK134195|Eef2|13629|eukaryotic translation elongation factor 2	AK144874|Eef2|13629|eukaryotic translation elongation factor 2	AK145509|Eef2|13629|eukaryotic translation elongation factor 2	AK145545|Eef2|13629|eukaryotic translation elongation factor 2	AK146508|Eef2|13629|eukaryotic translation elongation factor 2	AK149659|Eef2|13629|eukaryotic translation elongation factor 2	AK150136|Eef2|13629|eukaryotic translation elongation factor 2	AK150902|Eef2|13629|eukaryotic translation elongation factor 2	AK151487|Eef2|13629|eukaryotic translation elongation factor 2	AK151945|Eef2|13629|eukaryotic translation elongation factor 2	AK152146|Eef2|13629|eukaryotic translation elongation factor 2	AK152447|Eef2|13629|eukaryotic translation elongation factor 2	AK152587|Eef2|13629|eukaryotic translation elongation factor 2	AK152826|Eef2|13629|eukaryotic translation elongation factor 2	AK153275|Eef2|13629|eukaryotic translation elongation factor 2	AK153936|Eef2|13629|eukaryotic translation elongation factor 2	AK155325|Eef2|13629|eukaryotic translation elongation factor 2	AK159155|Eef2|13629|eukaryotic translation elongation factor 2	AK159421|Eef2|13629|eukaryotic translation elongation factor 2	AK159514|Eef2|13629|eukaryotic translation elongation factor 2	AK159806|Eef2|13629|eukaryotic translation elongation factor 2	AK159829|Eef2|13629|eukaryotic translation elongation factor 2	AK163063|Eef2|13629|eukaryotic translation elongation factor 2	AK166212|Eef2|13629|eukaryotic translation elongation factor 2	AK166595|Eef2|13629|eukaryotic translation elongation factor 2	AK166596|Eef2|13629|eukaryotic translation elongation factor 2	AK166719|Eef2|13629|eukaryotic translation elongation factor 2	AK166747|Eef2|13629|eukaryotic translation elongation factor 2	AK166758|Eef2|13629|eukaryotic translation elongation factor 2	AK166788|Eef2|13629|eukaryotic translation elongation factor 2	AK166815|Eef2|13629|eukaryotic translation elongation factor 2	AK166829|Eef2|13629|eukaryotic translation elongation factor 2	AK166968|Eef2|13629|eukaryotic translation elongation factor 2	AK167081|Eef2|13629|eukaryotic translation elongation factor 2	AK167093|Eef2|13629|eukaryotic translation elongation factor 2	AK167109|Eef2|13629|eukaryotic translation elongation factor 2	AK167115|Eef2|13629|eukaryotic translation elongation factor 2	AK167199|Eef2|13629|eukaryotic translation elongation factor 2	AK167221|Eef2|13629|eukaryotic translation elongation factor 2	AK167230|Eef2|13629|eukaryotic translation elongation factor 2	AK168527|Eef2|13629|eukaryotic translation elongation factor 2	AK168615|Eef2|13629|eukaryotic translation elongation factor 2	AK168638|Eef2|13629|eukaryotic translation elongation factor 2	AK168659|Eef2|13629|eukaryotic translation elongation factor 2	AK168794|Eef2|13629|eukaryotic translation elongation factor 2	AK168827|Eef2|13629|eukaryotic translation elongation factor 2	AK166851|Eef2|13629|eukaryotic translation elongation factor 2	AK167208|Eef2|13629|eukaryotic translation elongation factor 2	AK167281|Eef2|13629|eukaryotic translation elongation factor 2	AK166751|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr19_-_10752469_10752560	2.08837	bHLH_family.p2	AF240776|Pga5|58803|pepsinogen 5, group I	AK004109|Pga5|58803|pepsinogen 5, group I	AK168924|Pga5|58803|pepsinogen 5, group I	BC119523|Pga5|58803|pepsinogen 5, group I	AK053965|Pga5|58803|pepsinogen 5, group I	NM_021453|Pga5|58803|pepsinogen 5, group I
mm9_v1_chr16_-_17928270_17928336	2.08745	bHLH_family.p2	AK159289|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	AK170191|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	NM_153150|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr15_-_71558142_71558267	2.08675	bHLH_family.p2	BC125645|Fam135b|70363|family with sequence similarity 135, member B	BC125647|Fam135b|70363|family with sequence similarity 135, member B	AK043571|Fam135b|70363|family with sequence similarity 135, member B	NM_177819|Fam135b|70363|family with sequence similarity 135, member B
mm9_v1_chr13_-_72101161_72101175	2.08531	bHLH_family.p2	AK133937|Irx1|16371|Iroquois related homeobox 1 (Drosophila)	NM_010573|Irx1|16371|Iroquois related homeobox 1 (Drosophila)
mm9_v1_chr9_+_108239210_108239322	2.08347	bHLH_family.p2	AK177758|Rhoa|11848|ras homolog gene family, member A
mm9_v1_chr2_+_29917543_29917687	2.08272	bHLH_family.p2	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr4_+_43970559_43970608	2.081	bHLH_family.p2	BC031750|Glipr2|384009|GLI pathogenesis-related 2	NM_027450|Glipr2|384009|GLI pathogenesis-related 2	AK167595|Glipr2|384009|GLI pathogenesis-related 2	AK141459|Glipr2|384009|GLI pathogenesis-related 2	AK154433|Glipr2|384009|GLI pathogenesis-related 2	AK089960|Glipr2|384009|GLI pathogenesis-related 2	AK017557|Glipr2|384009|GLI pathogenesis-related 2
mm9_v1_chr11_+_109224275_109224393	2.07991	bHLH_family.p2	
mm9_v1_chr8_+_87604829_87604904	2.07965	bHLH_family.p2	AK010893|BC056474|414077|cDNA sequence BC056474	BC089623|BC056474|414077|cDNA sequence BC056474	NM_001001493|BC056474|414077|cDNA sequence BC056474	BC024937|BC056474|414077|cDNA sequence BC056474	BC091742|BC056474|414077|cDNA sequence BC056474	BC056474|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr8_+_98239780_98239831	2.07887	bHLH_family.p2	BC139198|Setd6|66083|SET domain containing 6	BC139199|Setd6|66083|SET domain containing 6	AK075597|Setd6|66083|SET domain containing 6	AK010304|Setd6|66083|SET domain containing 6	NM_001035123|Setd6|66083|SET domain containing 6	AK167753|Setd6|66083|SET domain containing 6
mm9_v1_chr6_+_72306146_72306241	2.07653	bHLH_family.p2	BC014685|Tmem150a|232086|transmembrane protein 150A
mm9_v1_chr19_-_45634998_45635032	2.07273	bHLH_family.p2	AK133087|Poll|56626|polymerase (DNA directed), lambda	AJ131889|Poll|56626|polymerase (DNA directed), lambda	NM_020032|Poll|56626|polymerase (DNA directed), lambda
mm9_v1_chr3_+_51028714_51028729	2.07141	bHLH_family.p2	BC139369|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	BC139370|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr15_-_67008433_67008465	2.06907	bHLH_family.p2	AK171719|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	NM_009177|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm9_v1_chr4_+_108000728_108000805	2.06665	bHLH_family.p2	AK081388|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK044999|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	NM_027250|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK008518|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168902|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168344|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	BC012391|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene
mm9_v1_chr14_+_56372605_56372670	2.06224	bHLH_family.p2	AK208092|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene
mm9_v1_chr8_+_113406022_113406076	2.0602	bHLH_family.p2	
mm9_v1_chr14_+_56097682_56097776	2.05956	bHLH_family.p2	AB045132|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK018788|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK146988|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC003484|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr3_+_88981440_88981554	2.05323	bHLH_family.p2	AK170115|Scamp3|24045|secretory carrier membrane protein 3	AF005036|Scamp3|24045|secretory carrier membrane protein 3	AF295403|Scamp3|24045|secretory carrier membrane protein 3
mm9_v1_chr10_+_23614493_23614678	2.05249	bHLH_family.p2	NM_011704|Vnn1|22361|vanin 1	AK145984|Vnn1|22361|vanin 1	AK002773|Vnn1|22361|vanin 1	AK167427|Vnn1|22361|vanin 1	AJ132098|Vnn1|22361|vanin 1	BC019203|Vnn1|22361|vanin 1
mm9_v1_chr9_-_53475167_53475249	2.05241	bHLH_family.p2	AK014894|Cul5|75717|cullin 5	BC037054|Cul5|75717|cullin 5
mm9_v1_chr5_+_31554072_31554103	2.05234	bHLH_family.p2	BC016516|Krtcap3|69815|keratinocyte associated protein 3	NM_027221|Krtcap3|69815|keratinocyte associated protein 3	AK007999|Krtcap3|69815|keratinocyte associated protein 3	BC107024|Krtcap3|69815|keratinocyte associated protein 3	BC107025|Krtcap3|69815|keratinocyte associated protein 3	BC027812|Krtcap3|69815|keratinocyte associated protein 3
mm9_v1_chr17_+_27693518_27693641	2.05024	bHLH_family.p2	NM_001025427|Hmga1|15361|high mobility group AT-hook 1	NM_001039356|Hmga1|15361|high mobility group AT-hook 1	NM_001166535|Hmga1|15361|high mobility group AT-hook 1	NM_001166536|Hmga1|15361|high mobility group AT-hook 1	NM_001166539|Hmga1|15361|high mobility group AT-hook 1	NM_001166540|Hmga1|15361|high mobility group AT-hook 1	NM_001166541|Hmga1|15361|high mobility group AT-hook 1	NM_001166542|Hmga1|15361|high mobility group AT-hook 1	NM_001166543|Hmga1|15361|high mobility group AT-hook 1	NM_001166544|Hmga1|15361|high mobility group AT-hook 1	NM_001166545|Hmga1|15361|high mobility group AT-hook 1	NM_001166546|Hmga1|15361|high mobility group AT-hook 1	NM_001166537|Hmga1|15361|high mobility group AT-hook 1	NM_016660|Hmga1|15361|high mobility group AT-hook 1	AK171334|Hmga1|15361|high mobility group AT-hook 1	AK155661|Hmga1|15361|high mobility group AT-hook 1	BC013455|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK010617|Hmga1|15361|high mobility group AT-hook 1	AK169783|Hmga1|15361|high mobility group AT-hook 1	NM_001166476|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	NM_001166477|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK154957|Hmga1|15361|high mobility group AT-hook 1	AK160036|Hmga1|15361|high mobility group AT-hook 1	BC008125|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	BC093496|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1
mm9_v1_chr9_-_123022207_123022342	2.0487	bHLH_family.p2	BC052464|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK169197|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC018334|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK018755|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK080541|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK007355|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC005531|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC025126|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK046166|Zdhhc3|69035|zinc finger, DHHC domain containing 3	NM_026917|Zdhhc3|69035|zinc finger, DHHC domain containing 3
mm9_v1_chr4_-_108506131_108506262	2.04823	bHLH_family.p2	BC024920|Btf3l4|70533|basic transcription factor 3-like 4	BC058282|Btf3l4|70533|basic transcription factor 3-like 4	AK011367|Btf3l4|70533|basic transcription factor 3-like 4	AK167256|Btf3l4|70533|basic transcription factor 3-like 4	BC138215|Btf3l4|70533|basic transcription factor 3-like 4	BC138216|Btf3l4|70533|basic transcription factor 3-like 4	BC024612|Btf3l4|70533|basic transcription factor 3-like 4	AK013120|Btf3l4|70533|basic transcription factor 3-like 4	AK076283|Btf3l4|70533|basic transcription factor 3-like 4	NM_027453|Btf3l4|70533|basic transcription factor 3-like 4	AK004239|Btf3l4|70533|basic transcription factor 3-like 4
mm9_v1_chr9_+_64025147_64025147	2.04435	bHLH_family.p2	AJ844648|Rpl4|67891|ribosomal protein L4
mm9_v1_chr19_-_5424694_5424744	2.04371	bHLH_family.p2	CT010290|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr13_-_100785524_100785589	2.04236	bHLH_family.p2	BC027640|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146865|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK145564|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146844|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141193|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141194|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK132265|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr3_-_10208480_10208567	2.04113	bHLH_family.p2	M28726|Fabp4|11770|fatty acid binding protein 4, adipocyte	U96149|Fabp9|21884|fatty acid binding protein 9, testis	CT010390|Fabp4|11770|fatty acid binding protein 4, adipocyte	K02109|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC018558|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC054426|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr17_-_84586361_84586476	2.04083	bHLH_family.p2	M58564|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr11_+_53246787_53246879	2.04031	bHLH_family.p2	NM_008110|Gdf9|14566|growth differentiation factor 9	AK136145|Gdf9|14566|growth differentiation factor 9	BC052667|Gdf9|14566|growth differentiation factor 9	L06444|Gdf9|14566|growth differentiation factor 9
mm9_v1_chr2_+_170336930_170336945	2.03955	bHLH_family.p2	AK007940|Pfdn4|109054|prefoldin 4	BC048510|Pfdn4|109054|prefoldin 4
mm9_v1_chr11_+_4167080_4167097	2.03903	bHLH_family.p2	AK042018|Lif|16878|leukemia inhibitory factor	NM_001039537|Lif|16878|leukemia inhibitory factor
mm9_v1_chr7_+_50862538_50862594	2.03782	bHLH_family.p2	AK015213|Zfp819|74400|zinc finger protein 819	NM_028913|Zfp819|74400|zinc finger protein 819	AK016669|Zfp819|74400|zinc finger protein 819
mm9_v1_chr11_+_97888023_97888023	2.03781	bHLH_family.p2	NM_001159483|Rpl19|19921|ribosomal protein L19
mm9_v1_chr5_+_97426665_97426877	2.03369	bHLH_family.p2	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr9_-_119488133_119488133	2.03282	bHLH_family.p2	AK147254|Scn5a|20271|sodium channel, voltage-gated, type V, alpha	AK147517|Scn5a|20271|sodium channel, voltage-gated, type V, alpha	NM_021544|Scn5a|20271|sodium channel, voltage-gated, type V, alpha
mm9_v1_chr4_+_139178802_139178820	2.03072	bHLH_family.p2	BC060650|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	NM_175438|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr8_-_129469710_129469776	2.02827	bHLH_family.p2	AK160168|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)	BC099449|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)	BC002087|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)	NM_024214|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)	AK002902|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)	AK141367|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)
mm9_v1_chr8_-_87956606_87956658	2.02761	bHLH_family.p2	AK007050|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK013123|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC040087|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr16_+_20717922_20717989	2.02652	bHLH_family.p2	BC092087|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H
mm9_v1_chr17_+_57201623_57201743	2.02634	bHLH_family.p2	AK077528|Crb3|224912|crumbs homolog 3 (Drosophila)	AK167279|Crb3|224912|crumbs homolog 3 (Drosophila)	BC024462|Crb3|224912|crumbs homolog 3 (Drosophila)	NM_177638|Crb3|224912|crumbs homolog 3 (Drosophila)
mm9_v1_chrX_+_55283804_55283819	2.02409	bHLH_family.p2	AK139364|Zic3|22773|zinc finger protein of the cerebellum 3	NM_009575|Zic3|22773|zinc finger protein of the cerebellum 3
mm9_v1_chr4_-_139523940_139523940	2.01911	bHLH_family.p2	AK045732|Klhdc7a|242721|kelch domain containing 7A	NM_173427|Klhdc7a|242721|kelch domain containing 7A
mm9_v1_chr10_-_128142007_128142106	2.01794	bHLH_family.p2	AJ223732|Cdk2|12566|cyclin-dependent kinase 2	U63337|Cdk2|12566|cyclin-dependent kinase 2	AK148017|Cdk2|12566|cyclin-dependent kinase 2	AK042462|Cdk2|12566|cyclin-dependent kinase 2	AK151979|Cdk2|12566|cyclin-dependent kinase 2	AK153983|Cdk2|12566|cyclin-dependent kinase 2	AK154997|Cdk2|12566|cyclin-dependent kinase 2	AK036589|Cdk2|12566|cyclin-dependent kinase 2	AK152922|Cdk2|12566|cyclin-dependent kinase 2	BC005654|Cdk2|12566|cyclin-dependent kinase 2	BC026145|Cdk2|12566|cyclin-dependent kinase 2	AK146845|Cdk2|12566|cyclin-dependent kinase 2	NM_016756|Cdk2|12566|cyclin-dependent kinase 2	NM_183417|Cdk2|12566|cyclin-dependent kinase 2
mm9_v1_chr4_+_154937946_154937994	2.01537	bHLH_family.p2	AK147917|Nadk|192185|NAD kinase
mm9_v1_chr19_+_29218114_29218256	2.00975	bHLH_family.p2	
mm9_v1_chr7_-_20158687_20158791	2.00694	bHLH_family.p2	BC028527|Gemin7|69731|gem (nuclear organelle) associated protein 7	AK010303|Gemin7|69731|gem (nuclear organelle) associated protein 7	NM_027189|Gemin7|69731|gem (nuclear organelle) associated protein 7
mm9_v1_chr1_+_168931547_168931719	2.00467	bHLH_family.p2	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr8_-_114535165_114535257	2.00246	bHLH_family.p2	BC027356|Kars|85305|lysyl-tRNA synthetase	BC035324|Kars|85305|lysyl-tRNA synthetase	AK153236|Kars|85305|lysyl-tRNA synthetase	AK089053|Kars|85305|lysyl-tRNA synthetase	AK090203|Kars|85305|lysyl-tRNA synthetase	AK167693|Kars|85305|lysyl-tRNA synthetase	NM_001130868|Kars|85305|lysyl-tRNA synthetase	NM_053092|Kars|85305|lysyl-tRNA synthetase	BC036289|Kars|85305|lysyl-tRNA synthetase
mm9_v1_chr8_-_107784507_107784581	2.00145	bHLH_family.p2	BC028542|Tradd|71609|TNFRSF1A-associated via death domain
mm9_v1_chr3_-_105762117_105762217	2.00131	bHLH_family.p2	AK169634|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	BC089574|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK162311|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK149176|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK167626|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK168590|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK151574|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK081249|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK002960|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	BC049640|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK011312|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK168028|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK168041|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK019459|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK037892|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK152253|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK152829|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK167480|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK169137|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK150730|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK151250|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK158569|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK157544|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr8_+_86239094_86239097	2.00055	bHLH_family.p2	NM_197982|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr9_-_53475519_53475552	2.0005	bHLH_family.p2	BC075710|Cul5|75717|cullin 5
mm9_v1_chr19_+_7131234_7131258	1.9979	bHLH_family.p2	NM_134147|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr3_-_137644466_137644512	1.99687	bHLH_family.p2	AF163255|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK145745|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK146180|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AF186023|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK079794|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK169584|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	BC014759|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	NM_011932|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1
mm9_v1_chr4_+_114732112_114732131	1.99577	bHLH_family.p2	AK144164|Tal1|21349|T-cell acute lymphocytic leukemia 1	M59764|Tal1|21349|T-cell acute lymphocytic leukemia 1	NM_011527|Tal1|21349|T-cell acute lymphocytic leukemia 1
mm9_v1_chr7_+_148033703_148033814	1.99427	bHLH_family.p2	AK005883|Odf3|69287|outer dense fiber of sperm tails 3	AB067773|Odf3|69287|outer dense fiber of sperm tails 3	BC104105|Odf3|69287|outer dense fiber of sperm tails 3	BC104106|Odf3|69287|outer dense fiber of sperm tails 3	BC106806|Odf3|69287|outer dense fiber of sperm tails 3	NM_027019|Odf3|69287|outer dense fiber of sperm tails 3
mm9_v1_chr4_-_147504787_147504806	1.99204	bHLH_family.p2	BC060239|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene	AK086198|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene	NM_027426|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene
mm9_v1_chr5_-_138040961_138040963	1.99167	bHLH_family.p2	AK004495|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr11_+_79806552_79806633	1.99003	bHLH_family.p2	AK141264|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	BC064461|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_001163018|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_199196|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr9_+_110666191_110666214	1.98776	bHLH_family.p2	AK011518|Myl3|17897|myosin, light polypeptide 3
mm9_v1_chrX_-_136406046_136406192	1.98522	bHLH_family.p2	BC132153|Morc4|75746|microrchidia 4	BC132497|Morc4|75746|microrchidia 4	BC098483|Morc4|75746|microrchidia 4	AK017472|Morc4|75746|microrchidia 4	AK048519|Morc4|75746|microrchidia 4	AK164017|Morc4|75746|microrchidia 4	AK053895|Morc4|75746|microrchidia 4	AK032807|Morc4|75746|microrchidia 4	NM_001193309|Morc4|75746|microrchidia 4	NM_029413|Morc4|75746|microrchidia 4
mm9_v1_chrX_+_54296250_54296269	1.98519	bHLH_family.p2	AK038616|Brs3|12209|bombesin-like receptor 3	NM_009766|Brs3|12209|bombesin-like receptor 3	BC106961|Brs3|12209|bombesin-like receptor 3	BC106962|Brs3|12209|bombesin-like receptor 3
mm9_v1_chr7_+_19679892_19679978	1.98503	bHLH_family.p2	NM_011383|Six5|20475|sine oculis-related homeobox 5 homolog (Drosophila)
mm9_v1_chr2_+_90519527_90519582	1.98434	bHLH_family.p2	AK171218|Nup160|59015|nucleoporin 160	AK155492|Nup160|59015|nucleoporin 160	BC052450|Nup160|59015|nucleoporin 160	BC054523|Nup160|59015|nucleoporin 160	AK160685|Nup160|59015|nucleoporin 160	AK164802|Nup160|59015|nucleoporin 160
mm9_v1_chr8_+_107115389_107115400	1.98274	bHLH_family.p2	BC094946|Pdp2|382051|pyruvate dehyrogenase phosphatase catalytic subunit 2
mm9_v1_chr7_+_51471844_51471850	1.98035	bHLH_family.p2	BC094281|Klk1b5|16622|kallikrein 1-related peptidase b5	NM_008456|Klk1b5|16622|kallikrein 1-related peptidase b5	BC013659|Klk1b5|16622|kallikrein 1-related peptidase b5
mm9_v1_chr7_-_149763980_149764029	1.97942	bHLH_family.p2	AK135234|H19|14955|H19 fetal liver mRNA	AK145379|H19|14955|H19 fetal liver mRNA
mm9_v1_chr14_-_56331924_56331924	1.97886	bHLH_family.p2	BC026422|Tgm1|21816|transglutaminase 1, K polypeptide	NM_019984|Tgm1|21816|transglutaminase 1, K polypeptide
mm9_v1_chr2_-_29949088_29949167	1.97494	bHLH_family.p2	AK004475|Zdhhc12|66220|zinc finger, DHHC domain containing 12	BC021432|Zdhhc12|66220|zinc finger, DHHC domain containing 12	AK013074|Zdhhc12|66220|zinc finger, DHHC domain containing 12	NM_001037762|Zdhhc12|66220|zinc finger, DHHC domain containing 12	NM_025428|Zdhhc12|66220|zinc finger, DHHC domain containing 12	AK087676|Zdhhc12|66220|zinc finger, DHHC domain containing 12
mm9_v1_chr17_-_13185324_13185414	1.97425	bHLH_family.p2	AK076111|Wtap|60532|Wilms' tumour 1-associating protein	NM_175394|Wtap|60532|Wilms' tumour 1-associating protein	AK031965|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr2_+_119177025_119177036	1.97338	bHLH_family.p2	AK007378|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	BC025169|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr16_-_17928207_17928265	1.97201	bHLH_family.p2	AK005070|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	BC037087|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr2_-_127618207_127618237	1.97174	bHLH_family.p2	AK165423|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC048556|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK008527|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK027942|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC116797|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC116799|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK005218|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene
mm9_v1_chr3_+_104583973_104584035	1.96864	bHLH_family.p2	AY184802|Ppm1j|71887|protein phosphatase 1J	NM_027982|Ppm1j|71887|protein phosphatase 1J	BC117498|Ppm1j|71887|protein phosphatase 1J	BC121788|Ppm1j|71887|protein phosphatase 1J	AK009235|Ppm1j|71887|protein phosphatase 1J
mm9_v1_chr3_-_58496285_58496330	1.96828	bHLH_family.p2	AK139626|Siah2|20439|seven in absentia 2	BC058400|Siah2|20439|seven in absentia 2	NM_009174|Siah2|20439|seven in absentia 2	AK149316|Siah2|20439|seven in absentia 2
mm9_v1_chr2_+_74560034_74560034	1.96749	bHLH_family.p2	NM_010469|Hoxd4|15436|homeobox D4
mm9_v1_chr4_+_133109291_133109339	1.96641	bHLH_family.p2	AK004930|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	BC019540|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	NM_011850|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	AY360323|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2	AY360324|Nr0b2|23957|nuclear receptor subfamily 0, group B, member 2
mm9_v1_chr2_+_84680782_84680813	1.96591	bHLH_family.p2	AK031215|Slc43a1|72401|solute carrier family 43, member 1	NM_001083809|Slc43a1|72401|solute carrier family 43, member 1
mm9_v1_chr18_+_74938827_74938895	1.96479	bHLH_family.p2	AK146007|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK050101|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK167567|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK169359|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	NM_177470|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK167715|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK002555|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	BC028901|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
mm9_v1_chr6_+_116288075_116288140	1.96366	bHLH_family.p2	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr5_-_137463661_137463751	1.96355	bHLH_family.p2	AK080799|Znhit1|70103|zinc finger, HIT domain containing 1	NM_027318|Znhit1|70103|zinc finger, HIT domain containing 1
mm9_v1_chr2_-_34678700_34678700	1.96199	bHLH_family.p2	AF140683|Fbxw2|30050|F-box and WD-40 domain protein 2	NM_001164768|Fbxw2|30050|F-box and WD-40 domain protein 2
mm9_v1_chr8_-_108231924_108232089	1.95936	bHLH_family.p2	AK087475|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC026993|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC018168|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC052498|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	NM_198299|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC023921|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene
mm9_v1_chr1_+_159436875_159436945	1.95816	bHLH_family.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr8_-_87370656_87370769	1.95698	bHLH_family.p2	EU639407|Calr|12317|calreticulin	BC003453|Calr|12317|calreticulin	AK136191|Calr|12317|calreticulin	AK160197|Calr|12317|calreticulin	M92988|Calr|12317|calreticulin	X14926|Calr|12317|calreticulin	AK075605|Calr|12317|calreticulin
mm9_v1_chr15_-_103181862_103181866	1.95536	bHLH_family.p2	X15203|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)
mm9_v1_chr15_+_54964990_54964990	1.95311	bHLH_family.p2	AK139888|Deptor|97998|DEP domain containing MTOR-interacting protein	NM_001037937|Deptor|97998|DEP domain containing MTOR-interacting protein
mm9_v1_chr3_-_94590356_94590436	1.95214	bHLH_family.p2	BC052941|Cgn|70737|cingulin	AK018143|Cgn|70737|cingulin	BC108378|Cgn|70737|cingulin	BC042459|Cgn|70737|cingulin	BC064474|Cgn|70737|cingulin	BC087546|Cgn|70737|cingulin	AK173148|Cgn|70737|cingulin	NM_001037711|Cgn|70737|cingulin
mm9_v1_chr6_+_133985988_133986050	1.94596	bHLH_family.p2	AK078773|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK035231|Etv6|14011|ets variant gene 6 (TEL oncogene)	BC052163|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK157265|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr5_-_100929644_100929677	1.94529	bHLH_family.p2	AK220225|Lin54|231506|lin-54 homolog (C. elegans)	AK134320|Lin54|231506|lin-54 homolog (C. elegans)	AK029288|Lin54|231506|lin-54 homolog (C. elegans)	NM_172714|Lin54|231506|lin-54 homolog (C. elegans)
mm9_v1_chr1_-_121401236_121401390	1.94436	bHLH_family.p2	AK159993|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AF174296|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	NM_022327|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)
mm9_v1_chr8_+_26895748_26895788	1.94407	bHLH_family.p2	BC021460|Lsm1|67207|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr10_-_117147722_117147744	1.94401	bHLH_family.p2	X58876|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC050902|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004881|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK088638|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chrX_-_7258126_7258153	1.94283	bHLH_family.p2	BC132580|Magix|54634|MAGI family member, X-linked	BC132582|Magix|54634|MAGI family member, X-linked
mm9_v1_chr17_+_47767638_47767638	1.94248	bHLH_family.p2	BC060712|Usp49|224836|ubiquitin specific peptidase 49	NM_198421|Usp49|224836|ubiquitin specific peptidase 49
mm9_v1_chr9_-_99776467_99776588	1.94246	bHLH_family.p2	BC069948|Sox14|20669|SRY-box containing gene 14	AK138208|Sox14|20669|SRY-box containing gene 14	BC055767|Sox14|20669|SRY-box containing gene 14	BC083360|Sox14|20669|SRY-box containing gene 14	BC100555|Sox14|20669|SRY-box containing gene 14	NM_011440|Sox14|20669|SRY-box containing gene 14
mm9_v1_chr10_+_57834201_57834235	1.94175	bHLH_family.p2	NM_201242|Lims1|110829|LIM and senescent cell antigen-like domains 1	EU122953|Lims1|110829|LIM and senescent cell antigen-like domains 1
mm9_v1_chr3_+_99057679_99057682	1.94018	bHLH_family.p2	AK132578|Tbx15|21384|T-box 15	NM_009323|Tbx15|21384|T-box 15
mm9_v1_chr11_-_94937951_94938027	1.93927	bHLH_family.p2	BC053031|Itga3|16400|integrin alpha 3	NM_013565|Itga3|16400|integrin alpha 3
mm9_v1_chr13_-_74945368_74945386	1.93758	bHLH_family.p2	AK028843|Cast|12380|calpastatin	NM_009817|Cast|12380|calpastatin	AK028841|Cast|12380|calpastatin
mm9_v1_chr14_-_70842971_70843070	1.93489	bHLH_family.p2	NM_001164082|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr11_-_100831909_100831946	1.93442	bHLH_family.p2	BC110698|Ptrf|19285|polymerase I and transcript release factor	AK169463|Ptrf|19285|polymerase I and transcript release factor	NM_008986|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr6_+_85967184_85967184	1.93337	bHLH_family.p2	NM_012013|Figla|26910|folliculogenesis specific basic helix-loop-helix	U91840|Figla|26910|folliculogenesis specific basic helix-loop-helix
mm9_v1_chr5_+_31224206_31224267	1.92531	bHLH_family.p2	BC013464|Khk|16548|ketohexokinase	NM_008439|Khk|16548|ketohexokinase
mm9_v1_chr2_-_33496030_33496127	1.92372	bHLH_family.p2	AB221651|Lmx1b|16917|LIM homeobox transcription factor 1 beta	AF078166|Lmx1b|16917|LIM homeobox transcription factor 1 beta	NM_010725|Lmx1b|16917|LIM homeobox transcription factor 1 beta	BC119169|Lmx1b|16917|LIM homeobox transcription factor 1 beta	BC125469|Lmx1b|16917|LIM homeobox transcription factor 1 beta
mm9_v1_chr12_-_86715324_86715411	1.92337	bHLH_family.p2	AK186798|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr1_-_165242552_165242739	1.92121	bHLH_family.p2	AK165914|Prrx1|18933|paired related homeobox 1	AK019503|Prrx1|18933|paired related homeobox 1
mm9_v1_chr16_+_20498889_20499013	1.92109	bHLH_family.p2	AK145801|Eif2b5|224045|eukaryotic translation initiation factor 2B, subunit 5 epsilon	NM_172265|Eif2b5|224045|eukaryotic translation initiation factor 2B, subunit 5 epsilon	BC038620|Eif2b5|224045|eukaryotic translation initiation factor 2B, subunit 5 epsilon	BC027268|Eif2b5|224045|eukaryotic translation initiation factor 2B, subunit 5 epsilon	AK160985|Eif2b5|224045|eukaryotic translation initiation factor 2B, subunit 5 epsilon	BC085255|Eif2b5|224045|eukaryotic translation initiation factor 2B, subunit 5 epsilon
mm9_v1_chr15_-_31522411_31522489	1.9179	bHLH_family.p2	AK219685|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK216446|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK213471|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)
mm9_v1_chr2_-_131005549_131005768	1.91608	bHLH_family.p2	BC075733|Cenpb|12616|centromere protein B	BC006628|Cenpb|12616|centromere protein B	BC053333|Cenpb|12616|centromere protein B	NM_007682|Cenpb|12616|centromere protein B
mm9_v1_chr1_+_182499015_182499087	1.91418	bHLH_family.p2	AK135977|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK159433|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK166104|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	X14206|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK028042|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK146677|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK165158|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK169326|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK152360|Parp1|11545|poly (ADP-ribose) polymerase family, member 1
mm9_v1_chr4_+_130125682_130125774	1.91391	bHLH_family.p2	NM_025998|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	AK011850|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	BC116391|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	BC116392|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr4_-_132818978_132818980	1.91156	bHLH_family.p2	AB050741|Sytl1|269589|synaptotagmin-like 1
mm9_v1_chr9_+_110666178_110666184	1.91045	bHLH_family.p2	AK146943|Myl3|17897|myosin, light polypeptide 3	BC061222|Myl3|17897|myosin, light polypeptide 3	AK002312|Myl3|17897|myosin, light polypeptide 3	NM_010859|Myl3|17897|myosin, light polypeptide 3
mm9_v1_chr8_-_24348082_24348154	1.91036	bHLH_family.p2	BC002156|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	AK076104|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	NM_024240|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)
mm9_v1_chr11_+_70246079_70246238	1.90941	bHLH_family.p2	AK150389|Arrb2|216869|arrestin, beta 2	AK170647|Arrb2|216869|arrestin, beta 2	AK089542|Arrb2|216869|arrestin, beta 2	AK162889|Arrb2|216869|arrestin, beta 2	AK159317|Arrb2|216869|arrestin, beta 2	NM_145429|Arrb2|216869|arrestin, beta 2	AK154874|Arrb2|216869|arrestin, beta 2	AK170889|Arrb2|216869|arrestin, beta 2	BC016642|Arrb2|216869|arrestin, beta 2
mm9_v1_chr18_+_77303920_77303957	1.90801	bHLH_family.p2	AK029716|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164167|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164169|Pias2|17344|protein inhibitor of activated STAT 2	NM_008602|Pias2|17344|protein inhibitor of activated STAT 2	AK014871|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr4_-_135129534_135129534	1.90693	bHLH_family.p2	BC089372|Grhl3|230824|grainyhead-like 3 (Drosophila)	NM_001013756|Grhl3|230824|grainyhead-like 3 (Drosophila)
mm9_v1_chr6_+_97941776_97941914	1.90687	bHLH_family.p2	NM_008601|Mitf|17342|microphthalmia-associated transcription factor	U19875|Mitf|17342|microphthalmia-associated transcription factor	Z23066|Mitf|17342|microphthalmia-associated transcription factor	BC108976|Mitf|17342|microphthalmia-associated transcription factor	BC108977|Mitf|17342|microphthalmia-associated transcription factor	AB221657|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr8_-_87370795_87370829	1.90485	bHLH_family.p2	NM_007591|Calr|12317|calreticulin
mm9_v1_chr6_-_145024451_145024466	1.90456	bHLH_family.p2	AK012821|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr5_+_112705715_112705772	1.90377	bHLH_family.p2	AK149379|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK036436|Tpst2|22022|protein-tyrosine sulfotransferase 2	NM_009419|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK075672|Tpst2|22022|protein-tyrosine sulfotransferase 2	BC003721|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK163461|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK149502|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK150082|Tpst2|22022|protein-tyrosine sulfotransferase 2
mm9_v1_chr9_-_13631432_13631439	1.90239	bHLH_family.p2	AK019414|Cep57|74360|centrosomal protein 57	AK167523|Cep57|74360|centrosomal protein 57
mm9_v1_chr3_-_107024646_107024651	1.89649	bHLH_family.p2	BC147477|Cym|229697|chymosin	BC171994|Cym|229697|chymosin	NM_001111143|Cym|229697|chymosin
mm9_v1_chr9_-_97011440_97011575	1.89463	bHLH_family.p2	BC008171|Slc25a36|192287|solute carrier family 25, member 36	AK078779|Slc25a36|192287|solute carrier family 25, member 36	NM_138756|Slc25a36|192287|solute carrier family 25, member 36	AK042075|Slc25a36|192287|solute carrier family 25, member 36	AK053646|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr2_+_17976897_17976897	1.89402	bHLH_family.p2	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr17_-_56439695_56439708	1.89176	bHLH_family.p2	BC100496|Arrdc5|76920|arrestin domain containing 5	NM_029799|Arrdc5|76920|arrestin domain containing 5
mm9_v1_chr19_+_11844839_11844928	1.89056	bHLH_family.p2	AK165616|Mrpl16|94063|mitochondrial ribosomal protein L16	BC044721|Mrpl16|94063|mitochondrial ribosomal protein L16	AK011971|Mrpl16|94063|mitochondrial ribosomal protein L16	BC029009|Mrpl16|94063|mitochondrial ribosomal protein L16	AB049643|Mrpl16|94063|mitochondrial ribosomal protein L16	NM_025606|Mrpl16|94063|mitochondrial ribosomal protein L16	AK004034|Mrpl16|94063|mitochondrial ribosomal protein L16	AK009687|Mrpl16|94063|mitochondrial ribosomal protein L16
mm9_v1_chr9_-_20703010_20703071	1.89043	bHLH_family.p2	U70733|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	BC008511|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	NM_016876|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AF108214|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AK168362|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AK038249|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G
mm9_v1_chr5_-_144670646_144670709	1.88955	bHLH_family.p2	BC026958|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC024410|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC026972|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	BC024480|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	NM_001172146|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	NM_146165|Aimp2|231872|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm9_v1_chr19_+_53674862_53674958	1.88783	bHLH_family.p2	AK165878|Smc3|13006|structural maintenace of chromosomes 3	NM_007790|Smc3|13006|structural maintenace of chromosomes 3	AK164387|Smc3|13006|structural maintenace of chromosomes 3	AK143996|Smc3|13006|structural maintenace of chromosomes 3	AK140705|Smc3|13006|structural maintenace of chromosomes 3	BC062935|Smc3|13006|structural maintenace of chromosomes 3	AF141294|Smc3|13006|structural maintenace of chromosomes 3	AF047601|Smc3|13006|structural maintenace of chromosomes 3
mm9_v1_chr1_+_90034940_90035048	1.88695	bHLH_family.p2	AY227197|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	U09930|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	D87867|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A
mm9_v1_chr8_-_26127211_26127343	1.88581	bHLH_family.p2	U41765|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC052710|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC047156|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK148174|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK155672|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK161778|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr5_+_76569257_76569352	1.8844	bHLH_family.p2	AK075635|Srd5a3|57357|steroid 5 alpha-reductase 3	AK139290|Srd5a3|57357|steroid 5 alpha-reductase 3	BC145647|Srd5a3|57357|steroid 5 alpha-reductase 3	NM_020611|Srd5a3|57357|steroid 5 alpha-reductase 3	AK138681|Srd5a3|57357|steroid 5 alpha-reductase 3	BC014771|Srd5a3|57357|steroid 5 alpha-reductase 3	AK040198|Srd5a3|57357|steroid 5 alpha-reductase 3	AK162527|Srd5a3|57357|steroid 5 alpha-reductase 3	BC039564|Srd5a3|57357|steroid 5 alpha-reductase 3
mm9_v1_chr2_+_109516053_109516053	1.88338	bHLH_family.p2	AY057909|Bdnf|12064|brain derived neurotrophic factor	AY057910|Bdnf|12064|brain derived neurotrophic factor	AY057911|Bdnf|12064|brain derived neurotrophic factor	EF125670|Bdnf|12064|brain derived neurotrophic factor	EF125671|Bdnf|12064|brain derived neurotrophic factor	EF125672|Bdnf|12064|brain derived neurotrophic factor	NM_001048139|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr15_+_78813524_78813616	1.88195	bHLH_family.p2	AK053194|Triobp|110253|TRIO and F-actin binding protein	AK170390|Triobp|110253|TRIO and F-actin binding protein	BC042760|Triobp|110253|TRIO and F-actin binding protein	AK197781|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr4_-_132818944_132818958	1.87973	bHLH_family.p2	AK131162|Sytl1|269589|synaptotagmin-like 1
mm9_v1_chr9_+_51855254_51855279	1.87917	bHLH_family.p2	NM_001104616|Rdx|19684|radixin	AK162204|Rdx|19684|radixin
mm9_v1_chr3_+_85378033_85378116	1.87836	bHLH_family.p2	AK166231|Pet112l|229487|PET112-like (yeast)	AK053978|Pet112l|229487|PET112-like (yeast)	AK081800|Pet112l|229487|PET112-like (yeast)	BC005709|Pet112l|229487|PET112-like (yeast)	AK034702|Pet112l|229487|PET112-like (yeast)	NM_144896|Pet112l|229487|PET112-like (yeast)	AK028193|Pet112l|229487|PET112-like (yeast)	AK134831|Pet112l|229487|PET112-like (yeast)
mm9_v1_chr11_+_97888269_97888292	1.87747	bHLH_family.p2	BC089549|Rpl19|19921|ribosomal protein L19	AK010440|Rpl19|19921|ribosomal protein L19	AK075817|Rpl19|19921|ribosomal protein L19	BC087961|Rpl19|19921|ribosomal protein L19	BC092539|Rpl19|19921|ribosomal protein L19	BC083131|Rpl19|19921|ribosomal protein L19	BC010710|Rpl19|19921|ribosomal protein L19
mm9_v1_chr2_+_32251409_32251409	1.8771	bHLH_family.p2	NM_133783|Ptges2|96979|prostaglandin E synthase 2
mm9_v1_chr2_+_153567020_153567113	1.87557	bHLH_family.p2	NM_007896|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	BC043333|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	AK154245|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	AK013626|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	U51196|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	AK146206|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	BC052728|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1	BC064444|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1
mm9_v1_chr6_-_87931475_87931614	1.87508	bHLH_family.p2	BC048709|H1fx|243529|H1 histone family, member X	NM_198622|H1fx|243529|H1 histone family, member X
mm9_v1_chr7_-_135039020_135039157	1.87451	bHLH_family.p2	AK008509|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK008578|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK002742|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	BC031732|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK013996|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK003237|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	NM_178600|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1
mm9_v1_chr10_-_121063321_121063512	1.87431	bHLH_family.p2	NM_001081056|Xpot|73192|exportin, tRNA (nuclear export receptor for tRNAs)
mm9_v1_chr2_+_30808463_30808542	1.87408	bHLH_family.p2	AK054404|Tor1b|30934|torsin family 1, member B	AK169692|Tor1b|30934|torsin family 1, member B	AK017290|Tor1b|30934|torsin family 1, member B	AK149754|Tor1b|30934|torsin family 1, member B	AJ297743|Tor1b|30934|torsin family 1, member B	NM_133673|Tor1b|30934|torsin family 1, member B	BC018456|Tor1b|30934|torsin family 1, member B	AK159843|Tor1b|30934|torsin family 1, member B
mm9_v1_chr1_+_92949986_92950162	1.87012	bHLH_family.p2	AK077637|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_001111311|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_008515|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK134120|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK133661|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AF045573|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144955|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144956|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC145642|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr1_-_181476342_181476404	1.87007	bHLH_family.p2	BC138836|Tfb2m|15278|transcription factor B2, mitochondrial	BC138837|Tfb2m|15278|transcription factor B2, mitochondrial	AK167930|Tfb2m|15278|transcription factor B2, mitochondrial	M74555|Tfb2m|15278|transcription factor B2, mitochondrial	AK090106|Tfb2m|15278|transcription factor B2, mitochondrial	AK168970|Tfb2m|15278|transcription factor B2, mitochondrial	AK169138|Tfb2m|15278|transcription factor B2, mitochondrial	AK166717|Tfb2m|15278|transcription factor B2, mitochondrial	AK146563|Tfb2m|15278|transcription factor B2, mitochondrial	NM_008249|Tfb2m|15278|transcription factor B2, mitochondrial
mm9_v1_chr7_+_19680105_19680141	1.86835	bHLH_family.p2	D83146|Six5|20475|sine oculis-related homeobox 5 homolog (Drosophila)
mm9_v1_chr6_-_124915407_124915438	1.86694	bHLH_family.p2	NM_012003|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr13_-_54789148_54789168	1.86657	bHLH_family.p2	AK147349|Rnf44|105239|ring finger protein 44	NM_001146025|Rnf44|105239|ring finger protein 44	NM_001146026|Rnf44|105239|ring finger protein 44	NM_134064|Rnf44|105239|ring finger protein 44
mm9_v1_chr1_+_154613622_154613679	1.86493	bHLH_family.p2	NM_026369|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr11_-_83462722_83462879	1.86396	bHLH_family.p2	AK153155|Ccl3|20302|chemokine (C-C motif) ligand 3	EU366956|Ccl3|20302|chemokine (C-C motif) ligand 3	BC111443|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065939|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065940|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065941|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065942|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065943|Ccl3|20302|chemokine (C-C motif) ligand 3	J04491|Ccl3|20302|chemokine (C-C motif) ligand 3	X12531|Ccl3|20302|chemokine (C-C motif) ligand 3	M23447|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150590|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150634|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150698|Ccl3|20302|chemokine (C-C motif) ligand 3	AK151581|Ccl3|20302|chemokine (C-C motif) ligand 3	AK152648|Ccl3|20302|chemokine (C-C motif) ligand 3	AK155058|Ccl3|20302|chemokine (C-C motif) ligand 3	NM_011337|Ccl3|20302|chemokine (C-C motif) ligand 3
mm9_v1_chr16_-_96349235_96349291	1.85997	bHLH_family.p2	X53476|Hmgn1|15312|high mobility group nucleosomal binding domain 1	BC088834|Hmgn1|15312|high mobility group nucleosomal binding domain 1	BC083138|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr1_-_60154977_60155020	1.85871	bHLH_family.p2	NM_001199061|Wdr12|57750|WD repeat domain 12	AK161299|Wdr12|57750|WD repeat domain 12	BC004748|Wdr12|57750|WD repeat domain 12	AK016611|Wdr12|57750|WD repeat domain 12
mm9_v1_chr17_-_57170896_57170957	1.85811	bHLH_family.p2	AK077415|Khsrp|16549|KH-type splicing regulatory protein	AK156541|Khsrp|16549|KH-type splicing regulatory protein	NM_010613|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr2_+_160706405_160706468	1.85695	bHLH_family.p2	AK220228|Lpin3|64899|lipin 3	AF286724|Lpin3|64899|lipin 3	NM_022883|Lpin3|64899|lipin 3
mm9_v1_chrX_-_71470766_71470914	1.85514	bHLH_family.p2	BC099506|Flna|192176|filamin, alpha
mm9_v1_chr7_-_149573693_149573841	1.85395	bHLH_family.p2	X53337|Ctsd|13033|cathepsin D	AK167867|Ctsd|13033|cathepsin D	AK150622|Ctsd|13033|cathepsin D	AK089294|Ctsd|13033|cathepsin D	AK150364|Ctsd|13033|cathepsin D	AK150579|Ctsd|13033|cathepsin D	AK150636|Ctsd|13033|cathepsin D	AK150694|Ctsd|13033|cathepsin D	AK150768|Ctsd|13033|cathepsin D	AK151256|Ctsd|13033|cathepsin D	AK151275|Ctsd|13033|cathepsin D	AK151276|Ctsd|13033|cathepsin D	AK151374|Ctsd|13033|cathepsin D	AK151829|Ctsd|13033|cathepsin D	AK152168|Ctsd|13033|cathepsin D	AK152187|Ctsd|13033|cathepsin D	AK152188|Ctsd|13033|cathepsin D	AK152458|Ctsd|13033|cathepsin D	AK152567|Ctsd|13033|cathepsin D	AK152578|Ctsd|13033|cathepsin D	AK152680|Ctsd|13033|cathepsin D	AK152828|Ctsd|13033|cathepsin D	AK152881|Ctsd|13033|cathepsin D	AK152892|Ctsd|13033|cathepsin D	AK153191|Ctsd|13033|cathepsin D	AK153291|Ctsd|13033|cathepsin D	AK159097|Ctsd|13033|cathepsin D	AK159209|Ctsd|13033|cathepsin D	AK159490|Ctsd|13033|cathepsin D	AK159580|Ctsd|13033|cathepsin D	AK159896|Ctsd|13033|cathepsin D	AK167698|Ctsd|13033|cathepsin D	AK171195|Ctsd|13033|cathepsin D	AK172583|Ctsd|13033|cathepsin D	AK150363|Ctsd|13033|cathepsin D	AK151962|Ctsd|13033|cathepsin D	AK152406|Ctsd|13033|cathepsin D	AK159743|Ctsd|13033|cathepsin D	AK152036|Ctsd|13033|cathepsin D	AK166864|Ctsd|13033|cathepsin D	AK167750|Ctsd|13033|cathepsin D	AK152593|Ctsd|13033|cathepsin D	BC048900|Ctsd|13033|cathepsin D	BC053937|Ctsd|13033|cathepsin D	BC053940|Ctsd|13033|cathepsin D	AK152638|Ctsd|13033|cathepsin D	BC057931|Ctsd|13033|cathepsin D	AK167143|Ctsd|13033|cathepsin D	AK159512|Ctsd|13033|cathepsin D	NM_009983|Ctsd|13033|cathepsin D	X52886|Ctsd|13033|cathepsin D	AK166938|Ctsd|13033|cathepsin D	AK159440|Ctsd|13033|cathepsin D	AK159970|Ctsd|13033|cathepsin D	AK150946|Ctsd|13033|cathepsin D	AK152045|Ctsd|13033|cathepsin D	AK169139|Ctsd|13033|cathepsin D	AK165227|Ctsd|13033|cathepsin D	AK167366|Ctsd|13033|cathepsin D	AK093885|Ctsd|13033|cathepsin D	BC054758|Ctsd|13033|cathepsin D
mm9_v1_chr19_+_9052495_9052648	1.85372	bHLH_family.p2	AK011087|Eef1g|67160|eukaryotic translation elongation factor 1 gamma
mm9_v1_chr5_+_115224911_115225148	1.85269	bHLH_family.p2	AK039432|Ankrd13a|68420|ankyrin repeat domain 13a	AK156539|Ankrd13a|68420|ankyrin repeat domain 13a	BC049187|Ankrd13a|68420|ankyrin repeat domain 13a	BC061692|Ankrd13a|68420|ankyrin repeat domain 13a	NM_026718|Ankrd13a|68420|ankyrin repeat domain 13a
mm9_v1_chr8_+_74659107_74659219	1.85181	bHLH_family.p2	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr11_-_100831819_100831899	1.85091	bHLH_family.p2	AK154132|Ptrf|19285|polymerase I and transcript release factor	BC116701|Ptrf|19285|polymerase I and transcript release factor	BC117527|Ptrf|19285|polymerase I and transcript release factor	AF036249|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr4_-_46402288_46402309	1.8492	bHLH_family.p2	AK044073|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK153576|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	NM_029086|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	BC092543|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK017931|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK052584|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene
mm9_v1_chr11_+_75465651_75465651	1.84802	bHLH_family.p2	AK166638|Myo1c|17913|myosin IC	NM_001080774|Myo1c|17913|myosin IC
mm9_v1_chr13_-_100785593_100785609	1.84772	bHLH_family.p2	AK143233|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	NM_030026|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr15_+_59480204_59480213	1.84468	bHLH_family.p2	AK033358|Trib1|211770|tribbles homolog 1 (Drosophila)	AK028626|Trib1|211770|tribbles homolog 1 (Drosophila)	AK040738|Trib1|211770|tribbles homolog 1 (Drosophila)	AK041212|Trib1|211770|tribbles homolog 1 (Drosophila)	AK162876|Trib1|211770|tribbles homolog 1 (Drosophila)	NM_144549|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chrX_-_98280689_98280743	1.84457	bHLH_family.p2	BC050195|Slc7a3|11989|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	NM_007515|Slc7a3|11989|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	U70859|Slc7a3|11989|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	AK165931|Slc7a3|11989|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	AK077593|Slc7a3|11989|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	AK141558|Slc7a3|11989|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
mm9_v1_chr5_-_114292851_114293254	1.84399	bHLH_family.p2	AK201602|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr1_-_186635140_186635191	1.84188	bHLH_family.p2	NM_001081361|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1
mm9_v1_chr11_+_78325715_78325934	1.84091	bHLH_family.p2	AK165703|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	BC012879|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	BC006833|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	NM_026389|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	AK196491|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2
mm9_v1_chr2_-_131005791_131005843	1.8402	bHLH_family.p2	BC071269|Cenpb|12616|centromere protein B
mm9_v1_chrX_-_132706705_132706789	1.83818	bHLH_family.p2	AK137039|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK012030|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK027927|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK083347|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK156414|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK014459|Tceal8|66684|transcription elongation factor A (SII)-like 8	BC027269|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK076203|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_001168578|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_025703|Tceal8|66684|transcription elongation factor A (SII)-like 8
mm9_v1_chr10_-_94879435_94879509	1.83672	bHLH_family.p2	AK160537|Socs2|216233|suppressor of cytokine signaling 2	AK162591|Socs2|216233|suppressor of cytokine signaling 2	BC106153|Socs2|216233|suppressor of cytokine signaling 2	NM_007706|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr11_-_88816679_88816773	1.83619	bHLH_family.p2	AK050181|Scpep1|74617|serine carboxypeptidase 1	AK153485|Scpep1|74617|serine carboxypeptidase 1	BC021399|Scpep1|74617|serine carboxypeptidase 1	AF330052|Scpep1|74617|serine carboxypeptidase 1	AK153225|Scpep1|74617|serine carboxypeptidase 1	BC004847|Scpep1|74617|serine carboxypeptidase 1	AK014680|Scpep1|74617|serine carboxypeptidase 1	NM_029023|Scpep1|74617|serine carboxypeptidase 1
mm9_v1_chr11_-_84632935_84633016	1.83488	bHLH_family.p2	AK156416|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	AK041034|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	AK164059|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	AK163986|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	BC005625|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	NM_145433|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr7_-_59117613_59117656	1.83148	bHLH_family.p2	NM_001115087|Fancf|100040608|Fanconi anemia, complementation group F
mm9_v1_chr4_-_136986432_136986438	1.83102	bHLH_family.p2	AK008858|Cela3b|67868|chymotrypsin-like elastase family, member 3B	AK009129|Cela3b|67868|chymotrypsin-like elastase family, member 3B	AK010149|Cela3b|67868|chymotrypsin-like elastase family, member 3B	BC061066|Cela3b|67868|chymotrypsin-like elastase family, member 3B	NM_026419|Cela3b|67868|chymotrypsin-like elastase family, member 3B
mm9_v1_chr16_-_8738377_8738512	1.82976	bHLH_family.p2	AF548565|Usp7|252870|ubiquitin specific peptidase 7	NM_001003918|Usp7|252870|ubiquitin specific peptidase 7	BC046963|Usp7|252870|ubiquitin specific peptidase 7
mm9_v1_chr11_-_76577079_76577091	1.82975	bHLH_family.p2	AK147799|Gosr1|53334|golgi SNAP receptor complex member 1	AK154972|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr4_+_135502353_135502412	1.8273	bHLH_family.p2	NM_008254|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK144768|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK145251|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK077842|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK132035|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK154033|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	S65036|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	BC025440|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase
mm9_v1_chr9_-_106794266_106794289	1.82506	bHLH_family.p2	AK167580|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK131997|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	NM_029103|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC022761|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr7_-_35437859_35437910	1.82013	bHLH_family.p2	BC031749|Kctd15|233107|potassium channel tetramerisation domain containing 15	NM_146188|Kctd15|233107|potassium channel tetramerisation domain containing 15
mm9_v1_chr3_+_58219610_58219610	1.81996	bHLH_family.p2	NM_001081229|Tsc22d2|72033|TSC22 domain family, member 2
mm9_v1_chr7_-_106289567_106289603	1.81927	bHLH_family.p2	AK030814|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr6_+_6906033_6906087	1.81813	bHLH_family.p2	AK002229|Acn9|71238|ACN9 homolog (S. cerevisiae)	AK028031|Acn9|71238|ACN9 homolog (S. cerevisiae)	AK004417|Acn9|71238|ACN9 homolog (S. cerevisiae)
mm9_v1_chr4_+_98590642_98590668	1.81743	bHLH_family.p2	BC020007|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr10_+_53316720_53316974	1.81446	bHLH_family.p2	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chr9_-_106794158_106794229	1.81291	bHLH_family.p2	AK176996|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr7_+_51443605_51443632	1.8127	bHLH_family.p2	BC146015|Klk1b24|16617|kallikrein 1-related peptidase b24	BC146019|Klk1b24|16617|kallikrein 1-related peptidase b24	AB039277|Klk1b24|16617|kallikrein 1-related peptidase b24	NM_010643|Klk1b24|16617|kallikrein 1-related peptidase b24
mm9_v1_chr13_-_76194247_76194443	1.81064	bHLH_family.p2	AY255541|Gpr150|238725|G protein-coupled receptor 150	BC118612|Gpr150|238725|G protein-coupled receptor 150	BC118614|Gpr150|238725|G protein-coupled receptor 150	AK047609|Gpr150|238725|G protein-coupled receptor 150	NM_175495|Gpr150|238725|G protein-coupled receptor 150
mm9_v1_chr7_+_53040723_53040749	1.81036	bHLH_family.p2	BC083185|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chr4_-_124359695_124359773	1.8091	bHLH_family.p2	AK008801|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)
mm9_v1_chr1_+_82313139_82313186	1.80831	bHLH_family.p2	NM_029777|Rhbdd1|76867|rhomboid domain containing 1	AK142277|Rhbdd1|76867|rhomboid domain containing 1	AK029751|Rhbdd1|76867|rhomboid domain containing 1
mm9_v1_chr19_-_41922577_41922621	1.80551	bHLH_family.p2	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr8_-_11478364_11478498	1.80087	bHLH_family.p2	AK217678|Rab20|19332|RAB20, member RAS oncogene family	AB232614|Rab20|19332|RAB20, member RAS oncogene family	M79310|Rab20|19332|RAB20, member RAS oncogene family	NM_011227|Rab20|19332|RAB20, member RAS oncogene family	X80332|Rab20|19332|RAB20, member RAS oncogene family
mm9_v1_chr10_+_127759711_127759783	1.80082	bHLH_family.p2	AK213625|Cnpy2|56530|canopy 2 homolog (zebrafish)	BC008261|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK007914|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK013568|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK180663|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr18_-_80348164_80348258	1.80054	bHLH_family.p2	AB093268|Adnp2|240442|ADNP homeobox 2	NM_175028|Adnp2|240442|ADNP homeobox 2
mm9_v1_chr11_+_120392016_120392056	1.80001	bHLH_family.p2	NM_008101|Gcgr|14527|glucagon receptor
mm9_v1_chr4_-_137352181_137352292	1.79844	bHLH_family.p2	X13409|Alpl|11647|alkaline phosphatase, liver/bone/kidney	BC065175|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK167481|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK166732|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK076459|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK161780|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK167023|Alpl|11647|alkaline phosphatase, liver/bone/kidney	J02980|Alpl|11647|alkaline phosphatase, liver/bone/kidney	NM_007431|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK164002|Alpl|11647|alkaline phosphatase, liver/bone/kidney
mm9_v1_chr16_-_17891608_17891820	1.79152	bHLH_family.p2	AK153026|Dgcr2|13356|DiGeorge syndrome critical region gene 2	X95480|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC062978|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK145495|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK042786|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK161022|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163903|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK088131|Dgcr2|13356|DiGeorge syndrome critical region gene 2	D78641|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC060636|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163872|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK141594|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_001109750|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_010048|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr4_-_141155782_141155838	1.79092	bHLH_family.p2	X66903|Fblim1|74202|filamin binding LIM protein 1	NM_001163256|Fblim1|74202|filamin binding LIM protein 1
mm9_v1_chr11_-_57981970_57982020	1.78909	bHLH_family.p2	AK049216|Gemin5|216766|gem (nuclear organelle) associated protein 5	BC137802|Gemin5|216766|gem (nuclear organelle) associated protein 5	BC144921|Gemin5|216766|gem (nuclear organelle) associated protein 5	BC144922|Gemin5|216766|gem (nuclear organelle) associated protein 5	AK143536|Gemin5|216766|gem (nuclear organelle) associated protein 5	AK131137|Gemin5|216766|gem (nuclear organelle) associated protein 5
mm9_v1_chr3_-_75073981_75073999	1.78628	bHLH_family.p2	AF251276|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK007347|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	AK008931|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2	NM_026460|Serpini2|67931|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm9_v1_chr1_+_90003410_90003436	1.78399	bHLH_family.p2	AY227198|Ugt1a6b|394435|UDP glucuronosyltransferase 1 family, polypeptide A6B
mm9_v1_chr18_+_46757333_46757491	1.7828	bHLH_family.p2	AK019451|Eif1a|13664|eukaryotic translation initiation factor 1A	NM_010120|Eif1a|13664|eukaryotic translation initiation factor 1A	AK013268|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150651|Eif1a|13664|eukaryotic translation initiation factor 1A	AF026481|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150673|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150677|Eif1a|13664|eukaryotic translation initiation factor 1A	AK009026|Eif1a|13664|eukaryotic translation initiation factor 1A	AK166368|Eif1a|13664|eukaryotic translation initiation factor 1A	BC027437|Eif1a|13664|eukaryotic translation initiation factor 1A	AK167333|Eif1a|13664|eukaryotic translation initiation factor 1A
mm9_v1_chr17_+_47760252_47760265	1.78013	bHLH_family.p2	AK003617|Med20|56771|mediator complex subunit 20
mm9_v1_chr3_-_88288055_88288076	1.78003	bHLH_family.p2	AK003174|Lmna|16905|lamin A	AK210233|Lmna|16905|lamin A
mm9_v1_chr6_-_134516930_134517009	1.77939	bHLH_family.p2	BC060704|Lrp6|16974|low density lipoprotein receptor-related protein 6	NM_008514|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chr15_-_65743815_65743958	1.77888	bHLH_family.p2	BC048716|Oc90|18256|otoconin 90	AK012981|Oc90|18256|otoconin 90	NM_010953|Oc90|18256|otoconin 90	AF093591|Oc90|18256|otoconin 90
mm9_v1_chr13_-_76081142_76081219	1.77854	bHLH_family.p2	AK139158|Rhobtb3|73296|Rho-related BTB domain containing 3	AK020938|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr4_+_130125551_130125648	1.77626	bHLH_family.p2	AK011164|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	EF058048|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr15_+_79178408_79178527	1.77472	bHLH_family.p2	AK145835|Maff|17133|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
mm9_v1_chr17_+_37139856_37139982	1.77463	bHLH_family.p2	D21850|Zfp57|22715|zinc finger protein 57
mm9_v1_chr14_+_56097594_56097633	1.77409	bHLH_family.p2	NM_001037938|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	NM_030686|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC054361|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr11_-_86621130_86621161	1.7701	bHLH_family.p2	AK029935|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK010512|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	NM_026191|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm9_v1_chr4_-_106979732_106979773	1.76858	bHLH_family.p2	AK002549|Dio1|13370|deiodinase, iodothyronine, type I	BC089608|Dio1|13370|deiodinase, iodothyronine, type I	NM_007860|Dio1|13370|deiodinase, iodothyronine, type I	U49861|Dio1|13370|deiodinase, iodothyronine, type I	BC019786|Dio1|13370|deiodinase, iodothyronine, type I	BC037080|Dio1|13370|deiodinase, iodothyronine, type I
mm9_v1_chr11_-_99505377_99505402	1.76829	bHLH_family.p2	BC115508|Krtap4-7|76444|keratin associated protein 4-7	BC115509|Krtap4-7|76444|keratin associated protein 4-7	AK009665|Krtap4-7|76444|keratin associated protein 4-7	NM_029613|Krtap4-7|76444|keratin associated protein 4-7
mm9_v1_chr5_+_77403725_77403746	1.76722	bHLH_family.p2	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr5_+_123844794_123844938	1.7667	bHLH_family.p2	AK047475|Mlxip|208104|MLX interacting protein	NM_133917|Mlxip|208104|MLX interacting protein	NM_177582|Mlxip|208104|MLX interacting protein	BC137770|Mlxip|208104|MLX interacting protein	AY968204|Mlxip|208104|MLX interacting protein
mm9_v1_chr18_+_21103125_21103125	1.76666	bHLH_family.p2	AK050395|Rnf125|67664|ring finger protein 125	NM_026301|Rnf125|67664|ring finger protein 125
mm9_v1_chr4_+_119487105_119487332	1.76643	bHLH_family.p2	AY454348|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC058336|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	NM_010657|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454345|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr16_+_44724394_44724433	1.76621	bHLH_family.p2	NM_145972|BC027231|212547|cDNA sequence BC027231	BC027231|BC027231|212547|cDNA sequence BC027231	AK144612|BC027231|212547|cDNA sequence BC027231
mm9_v1_chr19_-_53465036_53465068	1.76481	bHLH_family.p2	AK168575|Smndc1|76479|survival motor neuron domain containing 1	BC058779|Smndc1|76479|survival motor neuron domain containing 1	AK010395|Smndc1|76479|survival motor neuron domain containing 1	AK078834|Smndc1|76479|survival motor neuron domain containing 1	AK090047|Smndc1|76479|survival motor neuron domain containing 1	NM_172429|Smndc1|76479|survival motor neuron domain containing 1
mm9_v1_chr2_+_119176963_119176993	1.76282	bHLH_family.p2	NM_026929|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	AK032218|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr2_-_180069255_180069417	1.76161	bHLH_family.p2	BC105656|Gata5|14464|GATA binding protein 5	BC105653|Gata5|14464|GATA binding protein 5	BC105654|Gata5|14464|GATA binding protein 5	BC105655|Gata5|14464|GATA binding protein 5	U84725|Gata5|14464|GATA binding protein 5	AK142213|Gata5|14464|GATA binding protein 5	NM_008093|Gata5|14464|GATA binding protein 5	AK132020|Gata5|14464|GATA binding protein 5
mm9_v1_chr17_-_24346280_24346475	1.7616	bHLH_family.p2	BC094362|Ntn3|18209|netrin 3	NM_010947|Ntn3|18209|netrin 3	AK083904|Ntn3|18209|netrin 3	BC053038|Ntn3|18209|netrin 3	AK031199|Ntn3|18209|netrin 3
mm9_v1_chr1_+_90062550_90062608	1.75968	bHLH_family.p2	AY227196|Ugt1a5|394433|UDP glucuronosyltransferase 1 family, polypeptide A5	NM_201643|Ugt1a5|394433|UDP glucuronosyltransferase 1 family, polypeptide A5	BC139093|Ugt1a5|394433|UDP glucuronosyltransferase 1 family, polypeptide A5	BC139094|Ugt1a5|394433|UDP glucuronosyltransferase 1 family, polypeptide A5
mm9_v1_chr11_+_35583304_35583391	1.75601	bHLH_family.p2	AK136305|Pank3|211347|pantothenate kinase 3	BC027089|Pank3|211347|pantothenate kinase 3
mm9_v1_chr6_+_116288073_116288073	1.75416	bHLH_family.p2	AK165647|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr7_-_104566013_104566047	1.7537	bHLH_family.p2	BC009165|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	NM_009381|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	AK050300|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)
mm9_v1_chr16_-_4997855_4997944	1.75361	bHLH_family.p2	BC115618|Sept12|71089|septin 12	BC115619|Sept12|71089|septin 12	AK016798|Sept12|71089|septin 12	NM_027669|Sept12|71089|septin 12	AK006458|Sept12|71089|septin 12	AK077091|Sept12|71089|septin 12
mm9_v1_chr18_+_85020742_85020795	1.75263	bHLH_family.p2	AK132102|Cyb5|109672|cytochrome b-5
mm9_v1_chr15_-_83000931_83000939	1.75216	bHLH_family.p2	AK010858|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr8_-_108660711_108660729	1.75176	bHLH_family.p2	BC096581|Esrp2|77411|epithelial splicing regulatory protein 2	AK168488|Esrp2|77411|epithelial splicing regulatory protein 2
mm9_v1_chr11_-_70223517_70223527	1.75154	bHLH_family.p2	BC090620|Pelp1|75273|proline, glutamic acid and leucine rich protein 1
mm9_v1_chr10_-_75236129_75236158	1.74946	bHLH_family.p2	AK144193|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr11_+_76485971_76485971	1.74934	bHLH_family.p2	BC048728|Bhlha9|320522|basic helix-loop-helix family, member a9	NM_177182|Bhlha9|320522|basic helix-loop-helix family, member a9
mm9_v1_chr14_-_119105434_119105469	1.7485	bHLH_family.p2	NM_001033336|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	NM_001163676|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr5_+_151755181_151755278	1.74729	bHLH_family.p2	BC138258|Kl|16591|klotho	BC138259|Kl|16591|klotho	NM_013823|Kl|16591|klotho	AB005141|Kl|16591|klotho	AB010088|Kl|16591|klotho
mm9_v1_chr14_-_68333427_68333447	1.74321	bHLH_family.p2	AK160223|Cdca2|108912|cell division cycle associated 2	AK031083|Cdca2|108912|cell division cycle associated 2	AK166952|Cdca2|108912|cell division cycle associated 2	BC037136|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr11_-_97490456_97490494	1.74188	bHLH_family.p2	BC006054|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr19_+_7131270_7131299	1.74029	bHLH_family.p2	AK052998|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr11_-_53236630_53236639	1.73899	bHLH_family.p2	BC089593|Leap2|259301|liver-expressed antimicrobial peptide 2	AJ409055|Leap2|259301|liver-expressed antimicrobial peptide 2	NM_153069|Leap2|259301|liver-expressed antimicrobial peptide 2
mm9_v1_chr17_-_45823086_45823135	1.73856	bHLH_family.p2	AK090200|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr5_-_124134289_124134379	1.73731	bHLH_family.p2	BC007191|Clip1|56430|CAP-GLY domain containing linker protein 1	NM_019765|Clip1|56430|CAP-GLY domain containing linker protein 1	AK220172|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr15_-_89256252_89256259	1.73643	bHLH_family.p2	BC018270|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle
mm9_v1_chr19_+_46379216_46379289	1.73405	bHLH_family.p2	NM_001177369|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK144994|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK137680|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK148160|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK150012|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AF155372|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
mm9_v1_chr11_+_96164825_96164850	1.73384	bHLH_family.p2	M26283|Hoxb5|15413|homeobox B5	NM_008268|Hoxb5|15413|homeobox B5
mm9_v1_chr17_+_24857052_24857220	1.73285	bHLH_family.p2	AK012360|Rps2|16898|ribosomal protein S2	AK146259|Rps2|16898|ribosomal protein S2	AK166664|Rps2|16898|ribosomal protein S2	BC087956|Rps2|16898|ribosomal protein S2	AK004568|Rps2|16898|ribosomal protein S2	AK019265|Rps2|16898|ribosomal protein S2	AK151119|Rps2|16898|ribosomal protein S2	AK151985|Rps2|16898|ribosomal protein S2	AK152299|Rps2|16898|ribosomal protein S2	AK159121|Rps2|16898|ribosomal protein S2	AK159138|Rps2|16898|ribosomal protein S2	AK163821|Rps2|16898|ribosomal protein S2	AK166549|Rps2|16898|ribosomal protein S2	AK166726|Rps2|16898|ribosomal protein S2	AK167799|Rps2|16898|ribosomal protein S2	AK167974|Rps2|16898|ribosomal protein S2	AK168307|Rps2|16898|ribosomal protein S2	AK168528|Rps2|16898|ribosomal protein S2	AK169119|Rps2|16898|ribosomal protein S2	AK167033|Rps2|16898|ribosomal protein S2	AK168630|Rps2|16898|ribosomal protein S2	BC002186|Rps2|16898|ribosomal protein S2	BC091730|Rps2|16898|ribosomal protein S2	BC091755|Rps2|16898|ribosomal protein S2	BC092286|Rps2|16898|ribosomal protein S2	BC094058|Rps2|16898|ribosomal protein S2	BC094273|Rps2|16898|ribosomal protein S2	BC106136|Rps2|16898|ribosomal protein S2	BC110678|Rps2|16898|ribosomal protein S2	BC116446|Rps2|16898|ribosomal protein S2	BC093493|Rps2|16898|ribosomal protein S2	BC117558|Rps2|16898|ribosomal protein S2	AF283559|Rps2|16898|ribosomal protein S2
mm9_v1_chr8_+_18595130_18595172	1.73194	bHLH_family.p2	AK083572|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK138858|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK042026|Mcph1|244329|microcephaly, primary autosomal recessive 1	BC056924|Mcph1|244329|microcephaly, primary autosomal recessive 1	NM_173189|Mcph1|244329|microcephaly, primary autosomal recessive 1
mm9_v1_chr7_+_86956134_86956146	1.7316	bHLH_family.p2	AK146740|Mesp2|17293|mesoderm posterior 2
mm9_v1_chr1_+_34529567_34529633	1.73068	bHLH_family.p2	AK014043|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr2_-_154718506_154718641	1.72966	bHLH_family.p2	BC113766|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC003848|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK019156|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK143553|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166862|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145401|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK012338|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC100539|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK076056|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK011503|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK042004|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166866|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145434|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	NM_026030|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm9_v1_chr1_-_36996371_36996496	1.72923	bHLH_family.p2	AK139317|Tmem131|56030|transmembrane protein 131	NM_018872|Tmem131|56030|transmembrane protein 131
mm9_v1_chr11_+_68702054_68702054	1.72851	bHLH_family.p2	AK028294|Rnf222|320040|ring finger protein 222	NM_177060|Rnf222|320040|ring finger protein 222
mm9_v1_chr11_-_96168185_96168223	1.72715	bHLH_family.p2	AK002860|0610040B09Rik|75395|RIKEN cDNA 0610040B09 gene
mm9_v1_chr3_+_88420105_88420182	1.72644	bHLH_family.p2	NM_001198911|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK144972|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr14_+_21522248_21522292	1.72257	bHLH_family.p2	NM_025366|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC052720|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC064310|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	AK027907|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC049582|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC092216|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	AK003263|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	AK011261|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1
mm9_v1_chr13_-_35998160_35998229	1.7166	bHLH_family.p2	BC024607|Rpp40|208366|ribonuclease P 40 subunit (human)	BC037666|Rpp40|208366|ribonuclease P 40 subunit (human)	AK048810|Rpp40|208366|ribonuclease P 40 subunit (human)	NM_145938|Rpp40|208366|ribonuclease P 40 subunit (human)
mm9_v1_chr2_+_101726413_101726444	1.7162	bHLH_family.p2	AK154731|Commd9|76501|COMM domain containing 9	AK007640|Commd9|76501|COMM domain containing 9	NM_029635|Commd9|76501|COMM domain containing 9	BC060058|Commd9|76501|COMM domain containing 9	BC030374|Commd9|76501|COMM domain containing 9	BC040688|Commd9|76501|COMM domain containing 9	BC043684|Commd9|76501|COMM domain containing 9
mm9_v1_chr1_+_120218430_120218469	1.71497	bHLH_family.p2	AK019209|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	BC058559|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK011340|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AY030275|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK009440|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK081486|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AB056870|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chrX_-_101396356_101396482	1.71492	bHLH_family.p2	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr11_+_97888237_97888268	1.71289	bHLH_family.p2	NM_009078|Rpl19|19921|ribosomal protein L19	AK168232|Rpl19|19921|ribosomal protein L19	AK168481|Rpl19|19921|ribosomal protein L19
mm9_v1_chr9_-_103267867_103268006	1.71249	bHLH_family.p2	AF215660|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AF320340|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	L22067|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC096479|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC062156|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC052770|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK010956|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr19_+_43827485_43827551	1.71207	bHLH_family.p2	AK009702|Cutc|66388|cutC copper transporter homolog (E.coli)	NM_001113562|Cutc|66388|cutC copper transporter homolog (E.coli)	NM_025530|Cutc|66388|cutC copper transporter homolog (E.coli)
mm9_v1_chr11_+_97564712_97564785	1.71132	bHLH_family.p2	AK153162|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK002331|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	NM_011971|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK050108|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK080755|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK010488|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	BC014783|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AF060092|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3
mm9_v1_chr10_-_61912352_61912501	1.71078	bHLH_family.p2	AK031911|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	BC049796|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	NM_181423|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	AJ968954|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	AK143755|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)
mm9_v1_chr19_-_5424751_5424826	1.71014	bHLH_family.p2	AK087456|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	AK154251|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr6_-_146582942_146583021	1.70932	bHLH_family.p2	AK204708|Tm7sf3|67623|transmembrane 7 superfamily member 3	AK010720|Tm7sf3|67623|transmembrane 7 superfamily member 3	BC049960|Tm7sf3|67623|transmembrane 7 superfamily member 3
mm9_v1_chr2_+_32092184_32092232	1.70598	bHLH_family.p2	AK053326|Pomt1|99011|protein-O-mannosyltransferase 1	BC027325|Pomt1|99011|protein-O-mannosyltransferase 1	NM_145145|Pomt1|99011|protein-O-mannosyltransferase 1	AK053889|Pomt1|99011|protein-O-mannosyltransferase 1	AK200298|Pomt1|99011|protein-O-mannosyltransferase 1
mm9_v1_chr5_-_46247789_46247790	1.70418	bHLH_family.p2	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr3_+_87847020_87847078	1.70408	bHLH_family.p2	AK011617|Gpatch4|66614|G patch domain containing 4	NM_001110809|Gpatch4|66614|G patch domain containing 4	NM_025663|Gpatch4|66614|G patch domain containing 4	AK078828|Gpatch4|66614|G patch domain containing 4	AK169111|Gpatch4|66614|G patch domain containing 4	BC019490|Gpatch4|66614|G patch domain containing 4	BC080676|Gpatch4|66614|G patch domain containing 4	AK018306|Gpatch4|66614|G patch domain containing 4	BC002265|Gpatch4|66614|G patch domain containing 4	AK017310|Gpatch4|66614|G patch domain containing 4
mm9_v1_chr8_-_11312686_11312717	1.6986	bHLH_family.p2	BC072650|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr3_-_107563372_107563394	1.69799	bHLH_family.p2	AK154261|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113529|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113530|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_007778|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr1_+_182834384_182834472	1.69776	bHLH_family.p2	NM_133705|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2	AK007535|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2	AK165618|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2	BC006882|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2	AK167622|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2	AK150756|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2	AK152302|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2
mm9_v1_chr7_+_51453560_51453599	1.69575	bHLH_family.p2	BC132657|Klk1b3|18050|kallikrein 1-related peptidase b3	BC132659|Klk1b3|18050|kallikrein 1-related peptidase b3	NM_008693|Klk1b3|18050|kallikrein 1-related peptidase b3	X01389|Klk1b3|18050|kallikrein 1-related peptidase b3
mm9_v1_chr7_-_106289639_106289648	1.69516	bHLH_family.p2	AK165015|Uvrag|78610|UV radiation resistance associated gene	AK078085|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr11_+_100948587_100948649	1.69495	bHLH_family.p2	NM_001159384|Mlx|21428|MAX-like protein X	NM_001159385|Mlx|21428|MAX-like protein X	NM_011550|Mlx|21428|MAX-like protein X	AK011478|Mlx|21428|MAX-like protein X	BC031380|Mlx|21428|MAX-like protein X	U43607|Mlx|21428|MAX-like protein X	BC038004|Mlx|21428|MAX-like protein X	AK142605|Mlx|21428|MAX-like protein X	AF213670|Mlx|21428|MAX-like protein X	AF213671|Mlx|21428|MAX-like protein X	AF213672|Mlx|21428|MAX-like protein X	U43548|Mlx|21428|MAX-like protein X	AK177451|Mlx|21428|MAX-like protein X
mm9_v1_chr11_-_99476128_99476159	1.6943	bHLH_family.p2	NM_001177537|Gm11562|100041477|predicted gene 11562	AK017442|Krtap2-4|71453|keratin associated protein 2-4	NM_027800|Krtap2-4|71453|keratin associated protein 2-4
mm9_v1_chr11_-_99412144_99412178	1.69326	bHLH_family.p2	BC120760|Krtap3-3|66380|keratin associated protein 3-3	BC120762|Krtap3-3|66380|keratin associated protein 3-3	AK009410|Krtap3-3|66380|keratin associated protein 3-3	AK010142|Krtap3-3|66380|keratin associated protein 3-3	NM_025524|Krtap3-3|66380|keratin associated protein 3-3	AK009052|Krtap3-3|66380|keratin associated protein 3-3
mm9_v1_chr14_+_55059393_55059736	1.69185	bHLH_family.p2	AK212295|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK186724|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK183589|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK218925|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK212401|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr13_-_99086890_99086960	1.69128	bHLH_family.p2	BC080837|Btf3|218490|basic transcription factor 3	BC008233|Btf3|218490|basic transcription factor 3	BC064010|Btf3|218490|basic transcription factor 3	NM_145455|Btf3|218490|basic transcription factor 3	AK160227|Btf3|218490|basic transcription factor 3	AK139664|Btf3|218490|basic transcription factor 3	AK147171|Btf3|218490|basic transcription factor 3	AK146332|Btf3|218490|basic transcription factor 3	NM_001170540|Btf3|218490|basic transcription factor 3
mm9_v1_chr18_+_10325174_10325177	1.69121	bHLH_family.p2	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr9_+_20692618_20692740	1.68968	bHLH_family.p2	NM_145610|Ppan|235036|peter pan homolog (Drosophila)	BC014688|Ppan|235036|peter pan homolog (Drosophila)	AK085695|Ppan|235036|peter pan homolog (Drosophila)	AK039027|Ppan|235036|peter pan homolog (Drosophila)	AK172615|Ppan|235036|peter pan homolog (Drosophila)	AK171672|Ppan|235036|peter pan homolog (Drosophila)	BC059277|Ppan|235036|peter pan homolog (Drosophila)
mm9_v1_chr5_-_125821418_125821488	1.68861	bHLH_family.p2	AK169906|Scarb1|20778|scavenger receptor class B, member 1	AK171602|Scarb1|20778|scavenger receptor class B, member 1	BC004656|Scarb1|20778|scavenger receptor class B, member 1	NM_016741|Scarb1|20778|scavenger receptor class B, member 1	AK028191|Scarb1|20778|scavenger receptor class B, member 1	AK154933|Scarb1|20778|scavenger receptor class B, member 1
mm9_v1_chr1_+_75165201_75165358	1.68823	bHLH_family.p2	NM_001159905|Zfand2b|68818|zinc finger, AN1 type domain 2B	NM_001159906|Zfand2b|68818|zinc finger, AN1 type domain 2B	BC011495|Zfand2b|68818|zinc finger, AN1 type domain 2B	AK151430|Zfand2b|68818|zinc finger, AN1 type domain 2B	NM_026846|Zfand2b|68818|zinc finger, AN1 type domain 2B	AK004332|Zfand2b|68818|zinc finger, AN1 type domain 2B
mm9_v1_chr10_+_36694322_36694389	1.68572	bHLH_family.p2	AK165734|Hdac2|15182|histone deacetylase 2	NM_008229|Hdac2|15182|histone deacetylase 2	AK051753|Hdac2|15182|histone deacetylase 2	BC138517|Hdac2|15182|histone deacetylase 2	U31758|Hdac2|15182|histone deacetylase 2
mm9_v1_chr1_-_53841997_53842058	1.68306	bHLH_family.p2	AK029551|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK165291|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AY092028|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK153108|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	BC006579|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK035693|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK076932|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK083332|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	NM_133810|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)
mm9_v1_chr9_-_114753191_114753285	1.68252	bHLH_family.p2	BC027554|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK012262|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	NM_027294|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK137729|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK161079|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8
mm9_v1_chr1_+_193730645_193730708	1.68182	bHLH_family.p2	AK145100|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	NM_009579|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	BC052166|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1
mm9_v1_chr1_-_75206018_75206068	1.68073	bHLH_family.p2	BC021773|Glb1l|74577|galactosidase, beta 1-like	AK014667|Glb1l|74577|galactosidase, beta 1-like
mm9_v1_chr11_+_11586273_11586432	1.6795	bHLH_family.p2	BC138789|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chrX_-_7258190_7258376	1.67845	bHLH_family.p2	BC099459|Magix|54634|MAGI family member, X-linked	NM_018832|Magix|54634|MAGI family member, X-linked	AK158091|Magix|54634|MAGI family member, X-linked	AK077898|Magix|54634|MAGI family member, X-linked
mm9_v1_chr5_-_31522889_31523027	1.67713	bHLH_family.p2	BC009004|Ppm1g|14208|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	NM_008014|Ppm1g|14208|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
mm9_v1_chrX_-_101609169_101609195	1.67706	bHLH_family.p2	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr11_-_70465629_70465690	1.67658	bHLH_family.p2	AJ279848|Pfn1|18643|profilin 1
mm9_v1_chr3_-_79646568_79646600	1.67548	bHLH_family.p2	AK079384|Tmem144|70652|transmembrane protein 144	NM_027495|Tmem144|70652|transmembrane protein 144	AK017808|Tmem144|70652|transmembrane protein 144
mm9_v1_chr8_-_11478623_11478709	1.67474	bHLH_family.p2	AK152454|Rab20|19332|RAB20, member RAS oncogene family	BC089570|Rab20|19332|RAB20, member RAS oncogene family	AK163743|Rab20|19332|RAB20, member RAS oncogene family	AK164541|Rab20|19332|RAB20, member RAS oncogene family	AK145566|Rab20|19332|RAB20, member RAS oncogene family	BC051569|Rab20|19332|RAB20, member RAS oncogene family
mm9_v1_chr14_-_104867215_104867215	1.67167	bHLH_family.p2	AY706205|Pou4f1|18996|POU domain, class 4, transcription factor 1	NM_011143|Pou4f1|18996|POU domain, class 4, transcription factor 1
mm9_v1_chr18_+_48204988_48204988	1.67164	bHLH_family.p2	BC089539|Gm5506|433182|predicted gene 5506	NM_001025388|Gm5506|433182|predicted gene 5506
mm9_v1_chr3_+_95392855_95392908	1.66756	bHLH_family.p2	NM_001177669|Golph3l|229593|golgi phosphoprotein 3-like	NM_001177670|Golph3l|229593|golgi phosphoprotein 3-like	NM_146133|Golph3l|229593|golgi phosphoprotein 3-like	BC047147|Golph3l|229593|golgi phosphoprotein 3-like	AK008434|Golph3l|229593|golgi phosphoprotein 3-like	AK089547|Golph3l|229593|golgi phosphoprotein 3-like	AK160454|Golph3l|229593|golgi phosphoprotein 3-like	AK169724|Golph3l|229593|golgi phosphoprotein 3-like	AK167675|Golph3l|229593|golgi phosphoprotein 3-like
mm9_v1_chr10_-_80259390_80259483	1.66557	bHLH_family.p2	AK188371|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK177003|Plekhj1|78670|pleckstrin homology domain containing, family J member 1
mm9_v1_chr9_-_21092394_21092412	1.66473	bHLH_family.p2	BC021438|Kri1|215194|KRI1 homolog (S. cerevisiae)	AK051997|Kri1|215194|KRI1 homolog (S. cerevisiae)	NM_145416|Kri1|215194|KRI1 homolog (S. cerevisiae)
mm9_v1_chr18_-_80348125_80348161	1.66447	bHLH_family.p2	BC044898|Adnp2|240442|ADNP homeobox 2	BC047352|Adnp2|240442|ADNP homeobox 2
mm9_v1_chr4_-_116228531_116228547	1.66409	bHLH_family.p2	AK041960|Tmem69|230657|transmembrane protein 69	BC106178|Tmem69|230657|transmembrane protein 69	NM_177670|Tmem69|230657|transmembrane protein 69
mm9_v1_chr4_+_139178924_139178962	1.6618	bHLH_family.p2	BC056226|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr14_-_47010184_47010343	1.66067	bHLH_family.p2	X56848|Bmp4|12159|bone morphogenetic protein 4	BC034053|Bmp4|12159|bone morphogenetic protein 4	BC013459|Bmp4|12159|bone morphogenetic protein 4	AK136527|Bmp4|12159|bone morphogenetic protein 4	NM_007554|Bmp4|12159|bone morphogenetic protein 4	AK145359|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chr10_-_79785786_79785871	1.65846	bHLH_family.p2	BC052535|Pcsk4|18551|proprotein convertase subtilisin/kexin type 4
mm9_v1_chr3_-_107563049_107563194	1.65742	bHLH_family.p2	M21149|Csf1|12977|colony stimulating factor 1 (macrophage)	M15692|Csf1|12977|colony stimulating factor 1 (macrophage)	AK170154|Csf1|12977|colony stimulating factor 1 (macrophage)	M21952|Csf1|12977|colony stimulating factor 1 (macrophage)	S78392|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066187|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066200|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066205|Csf1|12977|colony stimulating factor 1 (macrophage)	X05010|Csf1|12977|colony stimulating factor 1 (macrophage)	AK136808|Csf1|12977|colony stimulating factor 1 (macrophage)	AK138489|Csf1|12977|colony stimulating factor 1 (macrophage)	AK154872|Csf1|12977|colony stimulating factor 1 (macrophage)	AK160995|Csf1|12977|colony stimulating factor 1 (macrophage)	AK166370|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr18_+_85020800_85020860	1.65689	bHLH_family.p2	BC024341|Cyb5|109672|cytochrome b-5	AK002426|Cyb5|109672|cytochrome b-5	AK013210|Cyb5|109672|cytochrome b-5	NM_025797|Cyb5|109672|cytochrome b-5
mm9_v1_chr2_+_28696131_28696288	1.65596	bHLH_family.p2	AK144739|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	BC132351|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	AK166327|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	BC066017|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm9_v1_chr11_-_101327431_101327547	1.65377	bHLH_family.p2	BC085504|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK159310|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	BC025496|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK170371|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	BC099678|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK154965|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK154178|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK159315|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK160891|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK034795|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK155342|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	NM_012037|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK145193|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr8_-_26127346_26127364	1.65095	bHLH_family.p2	AK155582|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr9_-_106794234_106794259	1.6506	bHLH_family.p2	AB009291|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK165646|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK014338|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC038901|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr18_+_77304212_77304557	1.64938	bHLH_family.p2	NM_001164168|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164170|Pias2|17344|protein inhibitor of activated STAT 2	BC034711|Pias2|17344|protein inhibitor of activated STAT 2	BC005596|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr1_+_120218417_120218424	1.64842	bHLH_family.p2	NM_026472|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK077770|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr4_+_123594712_123594800	1.6482	bHLH_family.p2	BC071245|Rragc|54170|Ras-related GTP binding C	AK150792|Rragc|54170|Ras-related GTP binding C	AK159434|Rragc|54170|Ras-related GTP binding C	BC005417|Rragc|54170|Ras-related GTP binding C	AK166658|Rragc|54170|Ras-related GTP binding C	AK159355|Rragc|54170|Ras-related GTP binding C	AB017616|Rragc|54170|Ras-related GTP binding C
mm9_v1_chr17_-_45710213_45710219	1.64703	bHLH_family.p2	AK030768|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK084097|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK135366|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK146205|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr12_-_55304761_55304805	1.64549	bHLH_family.p2	AF421882|Egln3|112407|EGL nine homolog 3 (C. elegans)	BC044926|Egln3|112407|EGL nine homolog 3 (C. elegans)	BC069893|Egln3|112407|EGL nine homolog 3 (C. elegans)	BC058278|Egln3|112407|EGL nine homolog 3 (C. elegans)	AK033509|Egln3|112407|EGL nine homolog 3 (C. elegans)	AK165972|Egln3|112407|EGL nine homolog 3 (C. elegans)	AK170732|Egln3|112407|EGL nine homolog 3 (C. elegans)
mm9_v1_chr1_-_164478475_164478591	1.64536	bHLH_family.p2	BC014872|Mettl13|71449|methyltransferase like 13	NM_144877|Mettl13|71449|methyltransferase like 13
mm9_v1_chr11_+_60230646_60230770	1.64394	bHLH_family.p2	AK017120|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	NM_025757|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK039435|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr16_-_32079317_32079415	1.64332	bHLH_family.p2	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr14_-_58364879_58364959	1.64231	bHLH_family.p2	AK164789|Lats2|50523|large tumor suppressor 2	BC053028|Lats2|50523|large tumor suppressor 2	AK029966|Lats2|50523|large tumor suppressor 2	AK029242|Lats2|50523|large tumor suppressor 2	AK029870|Lats2|50523|large tumor suppressor 2	AK163607|Lats2|50523|large tumor suppressor 2	BC024819|Lats2|50523|large tumor suppressor 2	AK081190|Lats2|50523|large tumor suppressor 2	NM_015771|Lats2|50523|large tumor suppressor 2
mm9_v1_chr8_-_97125577_97125635	1.64017	bHLH_family.p2	AK151603|Fam192a|102122|family with sequence similarity 192, member A	BC025472|Fam192a|102122|family with sequence similarity 192, member A	BC040818|Fam192a|102122|family with sequence similarity 192, member A	BC027060|Fam192a|102122|family with sequence similarity 192, member A	AK010053|Fam192a|102122|family with sequence similarity 192, member A	NM_028221|Fam192a|102122|family with sequence similarity 192, member A
mm9_v1_chr19_-_40261753_40261779	1.63737	bHLH_family.p2	BC022151|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC023894|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AY227736|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC034831|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC016494|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AK050082|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	NM_145499|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70
mm9_v1_chr2_-_179960563_179960563	1.63554	bHLH_family.p2	AJ293593|Lama5|16776|laminin, alpha 5	NM_001081171|Lama5|16776|laminin, alpha 5
mm9_v1_chr11_+_120645606_120645625	1.63473	bHLH_family.p2	BC103782|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr15_+_101303908_101304071	1.6321	bHLH_family.p2	AK161149|Krt86|16679|keratin 86	NM_010667|Krt86|16679|keratin 86	BC139222|Krt86|16679|keratin 86	X99143|Krt86|16679|keratin 86
mm9_v1_chr17_+_66472859_66472952	1.63178	bHLH_family.p2	BC079656|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	NM_001003919|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK076357|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK049419|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK152868|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
mm9_v1_chr9_-_58160063_58160199	1.63106	bHLH_family.p2	BC003973|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr1_+_82313187_82313198	1.62808	bHLH_family.p2	AK079448|Rhbdd1|76867|rhomboid domain containing 1	AK161153|Rhbdd1|76867|rhomboid domain containing 1
mm9_v1_chrX_-_34529689_34529693	1.62622	bHLH_family.p2	NM_001177324|Sept6|56526|septin 6	NM_019942|Sept6|56526|septin 6
mm9_v1_chr10_-_117282901_117283016	1.62621	bHLH_family.p2	BC147390|Rap1b|215449|RAS related protein 1b	BC147391|Rap1b|215449|RAS related protein 1b	AK178034|Rap1b|215449|RAS related protein 1b	AK196093|Rap1b|215449|RAS related protein 1b	AK199293|Rap1b|215449|RAS related protein 1b	AK218552|Rap1b|215449|RAS related protein 1b	BC033382|Rap1b|215449|RAS related protein 1b	BC094066|Rap1b|215449|RAS related protein 1b	AK167548|Rap1b|215449|RAS related protein 1b	AK153870|Rap1b|215449|RAS related protein 1b	AK143910|Rap1b|215449|RAS related protein 1b
mm9_v1_chr19_+_46380107_46380288	1.62584	bHLH_family.p2	AF155373|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	NM_019408|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK145312|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
mm9_v1_chr8_+_73118329_73118423	1.62429	bHLH_family.p2	AF288525|Isyna1|71780|myo-inositol 1-phosphate synthase A1	NM_023627|Isyna1|71780|myo-inositol 1-phosphate synthase A1	AK137089|Isyna1|71780|myo-inositol 1-phosphate synthase A1	BC003458|Isyna1|71780|myo-inositol 1-phosphate synthase A1	AK005029|Isyna1|71780|myo-inositol 1-phosphate synthase A1	AK079323|Isyna1|71780|myo-inositol 1-phosphate synthase A1
mm9_v1_chr8_-_83262881_83263070	1.6224	bHLH_family.p2	AF325921|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	BC009130|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	AF375046|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm9_v1_chr7_+_85928194_85928291	1.62031	bHLH_family.p2	AK002993|Mrps11|67994|mitochondrial ribosomal protein S11	AK152027|Mrps11|67994|mitochondrial ribosomal protein S11	AK166241|Mrps11|67994|mitochondrial ribosomal protein S11	BC028279|Mrps11|67994|mitochondrial ribosomal protein S11	AK160207|Mrps11|67994|mitochondrial ribosomal protein S11	BC005701|Mrps11|67994|mitochondrial ribosomal protein S11	AB049945|Mrps11|67994|mitochondrial ribosomal protein S11
mm9_v1_chr8_+_36438761_36438794	1.61937	bHLH_family.p2	AK052438|Ppp1r3b|244416|protein phosphatase 1, regulatory (inhibitor) subunit 3B	BC079666|Ppp1r3b|244416|protein phosphatase 1, regulatory (inhibitor) subunit 3B	NM_177741|Ppp1r3b|244416|protein phosphatase 1, regulatory (inhibitor) subunit 3B
mm9_v1_chr1_-_182186429_182186434	1.61903	bHLH_family.p2	AK148111|Psen2|19165|presenilin 2	NM_001128605|Psen2|19165|presenilin 2
mm9_v1_chr13_-_112599181_112599204	1.61727	bHLH_family.p2	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr12_-_103196366_103196464	1.6165	bHLH_family.p2	AF537188|Atxn3|110616|ataxin 3	AK030842|Atxn3|110616|ataxin 3	AK008675|Atxn3|110616|ataxin 3	BC087880|Atxn3|110616|ataxin 3	BC049743|Atxn3|110616|ataxin 3	NM_001167914|Atxn3|110616|ataxin 3	NM_029705|Atxn3|110616|ataxin 3
mm9_v1_chrX_+_83437113_83437125	1.61632	bHLH_family.p2	AK133411|Nr0b1|11614|nuclear receptor subfamily 0, group B, member 1	AK141239|Nr0b1|11614|nuclear receptor subfamily 0, group B, member 1	NM_007430|Nr0b1|11614|nuclear receptor subfamily 0, group B, member 1	U41568|Nr0b1|11614|nuclear receptor subfamily 0, group B, member 1
mm9_v1_chr6_+_125081890_125081965	1.61626	bHLH_family.p2	NM_138747|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	AK079914|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	AK154006|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	AK156568|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	BC007151|Nop2|110109|NOP2 nucleolar protein homolog (yeast)
mm9_v1_chr18_-_34166859_34166859	1.61523	bHLH_family.p2	NM_013512|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr9_-_15110567_15110606	1.61482	bHLH_family.p2	AK016432|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	AK088123|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	AK147073|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr10_-_23506981_23507073	1.61329	bHLH_family.p2	BC090257|Rps12|20042|ribosomal protein S12	BC089339|Rps12|20042|ribosomal protein S12	BC092044|Rps12|20042|ribosomal protein S12	BC002079|Rps12|20042|ribosomal protein S12	BC099377|Rps12|20042|ribosomal protein S12	BC089338|Rps12|20042|ribosomal protein S12	AK132208|Rps12|20042|ribosomal protein S12	AK166923|Rps12|20042|ribosomal protein S12	AK166992|Rps12|20042|ribosomal protein S12	BC096653|Rps12|20042|ribosomal protein S12	AK002848|Rps12|20042|ribosomal protein S12	AK008057|Rps12|20042|ribosomal protein S12	AK032757|Rps12|20042|ribosomal protein S12	AK168324|Rps12|20042|ribosomal protein S12	AK169215|Rps12|20042|ribosomal protein S12	NM_011295|Rps12|20042|ribosomal protein S12
mm9_v1_chr11_-_90548862_90548939	1.61238	bHLH_family.p2	AK181527|Tom1l1|71943|target of myb1-like 1 (chicken)	AJ505007|Tom1l1|71943|target of myb1-like 1 (chicken)	AK009826|Tom1l1|71943|target of myb1-like 1 (chicken)	AK083630|Tom1l1|71943|target of myb1-like 1 (chicken)	AF395837|Tom1l1|71943|target of myb1-like 1 (chicken)	AK033712|Tom1l1|71943|target of myb1-like 1 (chicken)	NM_028011|Tom1l1|71943|target of myb1-like 1 (chicken)
mm9_v1_chr19_+_55328356_55328506	1.60891	bHLH_family.p2	AK151378|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	BC031544|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK161024|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr1_-_82287990_82288082	1.60667	bHLH_family.p2	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr8_+_87604638_87604668	1.60629	bHLH_family.p2	AK147129|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr11_+_96668506_96668525	1.60302	bHLH_family.p2	AK080243|Cbx1|12412|chromobox homolog 1 (Drosophila HP1 beta)	AK088236|Cbx1|12412|chromobox homolog 1 (Drosophila HP1 beta)
mm9_v1_chr1_-_130488785_130488878	1.60249	bHLH_family.p2	Z80112|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	U59760|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	BC098322|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	AB000803|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	BC031665|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	Z80111|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	NM_009911|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	X99582|Cxcr4|12767|chemokine (C-X-C motif) receptor 4
mm9_v1_chr1_+_39592594_39592679	1.60095	bHLH_family.p2	AK144692|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK010503|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC049091|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	NM_028043|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK167440|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC050812|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed
mm9_v1_chr11_+_100981384_100981545	1.60011	bHLH_family.p2	AK160125|Tubg1|103733|tubulin, gamma 1	BC006581|Tubg1|103733|tubulin, gamma 1	NM_134024|Tubg1|103733|tubulin, gamma 1	AK183189|Tubg1|103733|tubulin, gamma 1	AK192509|Tubg1|103733|tubulin, gamma 1	AK154019|Tubg1|103733|tubulin, gamma 1	AK196283|Tubg1|103733|tubulin, gamma 1
mm9_v1_chr12_+_70473032_70473193	1.60002	bHLH_family.p2	BC083112|Arf6|11845|ADP-ribosylation factor 6	NM_007481|Arf6|11845|ADP-ribosylation factor 6	AK156960|Arf6|11845|ADP-ribosylation factor 6	BC003478|Arf6|11845|ADP-ribosylation factor 6	D87903|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr2_-_26459777_26459815	1.59827	bHLH_family.p2	BC125530|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	BC137840|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
mm9_v1_chr7_+_51462804_51462808	1.59718	bHLH_family.p2	BC034518|Klk1b4|18048|kallikrein 1-related pepidase b4	NM_010915|Klk1b4|18048|kallikrein 1-related pepidase b4	M11434|Klk1b4|18048|kallikrein 1-related pepidase b4
mm9_v1_chr8_-_69010394_69010447	1.59503	bHLH_family.p2	BC016246|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	BC034844|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK007637|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	NM_025465|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK009167|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK011532|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK051835|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK031875|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene
mm9_v1_chr3_+_116265890_116265995	1.59427	bHLH_family.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr15_+_99421458_99421594	1.59209	bHLH_family.p2	NM_009701|Aqp5|11830|aquaporin 5	AK009302|Aqp5|11830|aquaporin 5	AK004736|Aqp5|11830|aquaporin 5
mm9_v1_chr3_-_138152336_138152369	1.59116	bHLH_family.p2	BC096469|Metap1|75624|methionyl aminopeptidase 1	AK077694|Metap1|75624|methionyl aminopeptidase 1	NM_175224|Metap1|75624|methionyl aminopeptidase 1	AK153944|Metap1|75624|methionyl aminopeptidase 1	AK165034|Metap1|75624|methionyl aminopeptidase 1	AK152138|Metap1|75624|methionyl aminopeptidase 1	AK153231|Metap1|75624|methionyl aminopeptidase 1
mm9_v1_chr13_-_96661704_96661910	1.58928	bHLH_family.p2	BC094939|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC052916|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK080384|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK147360|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC150958|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK142813|Iqgap2|544963|IQ motif containing GTPase activating protein 2	NM_027711|Iqgap2|544963|IQ motif containing GTPase activating protein 2
mm9_v1_chr2_+_158620555_158620616	1.5892	bHLH_family.p2	BC029709|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	NM_145742|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK156955|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK155482|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK170952|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK004665|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35
mm9_v1_chr11_-_88579517_88579542	1.5882	bHLH_family.p2	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr16_+_17406078_17406185	1.58809	bHLH_family.p2	NM_023348|Snap29|67474|synaptosomal-associated protein 29	AY008722|Snap29|67474|synaptosomal-associated protein 29	AK007065|Snap29|67474|synaptosomal-associated protein 29	AK039203|Snap29|67474|synaptosomal-associated protein 29	AK005042|Snap29|67474|synaptosomal-associated protein 29	BC030066|Snap29|67474|synaptosomal-associated protein 29	AK147845|Snap29|67474|synaptosomal-associated protein 29
mm9_v1_chr6_-_34860807_34860883	1.58604	bHLH_family.p2	BC055046|Wdr91|101240|WD repeat domain 91	NM_001013366|Wdr91|101240|WD repeat domain 91
mm9_v1_chr11_-_34597324_34597373	1.58596	bHLH_family.p2	AY027438|Dock2|94176|dedicator of cyto-kinesis 2	NM_033374|Dock2|94176|dedicator of cyto-kinesis 2
mm9_v1_chr13_-_62959751_62959781	1.58548	bHLH_family.p2	AK168374|Fbp2|14120|fructose bisphosphatase 2	AK146946|Fbp2|14120|fructose bisphosphatase 2
mm9_v1_chr2_+_32092104_32092162	1.58435	bHLH_family.p2	AK153984|Pomt1|99011|protein-O-mannosyltransferase 1	AK050680|Pomt1|99011|protein-O-mannosyltransferase 1	AY494857|Pomt1|99011|protein-O-mannosyltransferase 1	AK134770|Pomt1|99011|protein-O-mannosyltransferase 1	AY007238|Pomt1|99011|protein-O-mannosyltransferase 1
mm9_v1_chr8_-_13253995_13254161	1.58434	bHLH_family.p2	AK081786|Adprhl1|234072|ADP-ribosylhydrolase like 1	AJ427360|Adprhl1|234072|ADP-ribosylhydrolase like 1	BC063759|Adprhl1|234072|ADP-ribosylhydrolase like 1	AK084501|Adprhl1|234072|ADP-ribosylhydrolase like 1	NM_172750|Adprhl1|234072|ADP-ribosylhydrolase like 1
mm9_v1_chr3_+_40512853_40512857	1.58415	bHLH_family.p2	AY550241|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	BC050810|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	BC139243|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	BC139245|Slc25a31|73333|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
mm9_v1_chr10_+_127520319_127520396	1.58321	bHLH_family.p2	AK166525|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK002621|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK011035|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK083276|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK145684|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK148891|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK150599|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK151081|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152788|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152976|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159737|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK160608|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK166603|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK166979|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167119|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK168941|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK169184|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK010314|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159978|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167764|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	NM_016774|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK151600|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK152730|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK159444|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167728|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK167160|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK084009|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK153099|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK160199|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK164383|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK168692|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC037127|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC046616|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AF030559|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	BC013253|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr11_-_119971500_119971623	1.57985	bHLH_family.p2	AK195379|Slc38a10|72055|solute carrier family 38, member 10	AK176940|Slc38a10|72055|solute carrier family 38, member 10	AK182790|Slc38a10|72055|solute carrier family 38, member 10	BC055017|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr11_+_77845840_77845855	1.57978	bHLH_family.p2	AK011939|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	BC115881|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	AK046465|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr2_+_51928350_51928369	1.57769	bHLH_family.p2	AY428571|Rif1|51869|Rap1 interacting factor 1 homolog (yeast)	NM_175238|Rif1|51869|Rap1 interacting factor 1 homolog (yeast)	AY585206|Rif1|51869|Rap1 interacting factor 1 homolog (yeast)
mm9_v1_chr5_-_147888037_147888155	1.57766	bHLH_family.p2	AK140320|Lnx2|140887|ligand of numb-protein X 2	AK170146|Lnx2|140887|ligand of numb-protein X 2	BC117938|Lnx2|140887|ligand of numb-protein X 2	BC117937|Lnx2|140887|ligand of numb-protein X 2	AF401681|Lnx2|140887|ligand of numb-protein X 2	BC090665|Lnx2|140887|ligand of numb-protein X 2	AK047053|Lnx2|140887|ligand of numb-protein X 2	AK036218|Lnx2|140887|ligand of numb-protein X 2	NM_080795|Lnx2|140887|ligand of numb-protein X 2
mm9_v1_chr11_+_73012929_73013003	1.57379	bHLH_family.p2	AK015273|Shpk|74637|sedoheptulokinase	AK171027|Shpk|74637|sedoheptulokinase	BC054721|Shpk|74637|sedoheptulokinase	BC056433|Shpk|74637|sedoheptulokinase	NM_029031|Shpk|74637|sedoheptulokinase
mm9_v1_chr19_+_52338812_52338967	1.57262	bHLH_family.p2	NM_008386|Ins1|16333|insulin I	AK007345|Ins1|16333|insulin I	AK008358|Ins1|16333|insulin I	AK148541|Ins1|16333|insulin I	AK007482|Ins1|16333|insulin I	BC098468|Ins1|16333|insulin I	BC145868|Ins1|16333|insulin I	BC145870|Ins1|16333|insulin I
mm9_v1_chrX_-_50467567_50467581	1.57043	bHLH_family.p2	BC051666|Plac1|56096|placental specific protein 1	AF234653|Plac1|56096|placental specific protein 1	AF250838|Plac1|56096|placental specific protein 1	AK005501|Plac1|56096|placental specific protein 1	NM_019538|Plac1|56096|placental specific protein 1
mm9_v1_chr4_-_43669315_43669362	1.57038	bHLH_family.p2	AK004497|Hint2|68917|histidine triad nucleotide binding protein 2	BC086940|Hint2|68917|histidine triad nucleotide binding protein 2	NM_026871|Hint2|68917|histidine triad nucleotide binding protein 2	AK170135|Hint2|68917|histidine triad nucleotide binding protein 2	AF356874|Hint2|68917|histidine triad nucleotide binding protein 2
mm9_v1_chr1_-_137064124_137064257	1.57035	bHLH_family.p2	AK158275|Gpr37l1|171469|G protein-coupled receptor 37-like 1	NM_134438|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr11_+_77992183_77992219	1.57024	bHLH_family.p2	BC039182|Tlcd1|68385|TLC domain containing 1	AK165432|Tlcd1|68385|TLC domain containing 1
mm9_v1_chr11_-_70223528_70223535	1.56713	bHLH_family.p2	AK005027|Pelp1|75273|proline, glutamic acid and leucine rich protein 1	AK016197|Pelp1|75273|proline, glutamic acid and leucine rich protein 1	AK128966|Pelp1|75273|proline, glutamic acid and leucine rich protein 1	NM_029231|Pelp1|75273|proline, glutamic acid and leucine rich protein 1
mm9_v1_chr5_+_31224275_31224288	1.56644	bHLH_family.p2	Y09335|Khk|16548|ketohexokinase
mm9_v1_chr17_+_47573557_47573589	1.56622	bHLH_family.p2	BC006605|AI661453|224833|expressed sequence AI661453	NM_145489|AI661453|224833|expressed sequence AI661453
mm9_v1_chr14_+_79880952_79881000	1.56533	bHLH_family.p2	BC057134|Elf1|13709|E74-like factor 1	NM_007920|Elf1|13709|E74-like factor 1
mm9_v1_chr7_-_106289616_106289631	1.56419	bHLH_family.p2	BC034176|Uvrag|78610|UV radiation resistance associated gene	AK020590|Uvrag|78610|UV radiation resistance associated gene	AK043084|Uvrag|78610|UV radiation resistance associated gene	AK165185|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr9_+_46076832_46076883	1.56257	bHLH_family.p2	BC011198|Apoa5|66113|apolipoprotein A-V
mm9_v1_chr4_-_149072713_149072721	1.5613	bHLH_family.p2	AK149935|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK150649|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK151482|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK152661|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr4_-_49694854_49694888	1.56033	bHLH_family.p2	AK029998|Ppp3r2|19059|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	NM_001004025|Ppp3r2|19059|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	AK161263|Ppp3r2|19059|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	S43865|Ppp3r2|19059|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	AK132760|Ppp3r2|19059|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	BC100409|Ppp3r2|19059|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)
mm9_v1_chr10_+_79635688_79635690	1.55834	bHLH_family.p2	AK005397|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	AK168176|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	NM_027207|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	AK050606|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	BC146018|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	BC146020|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene
mm9_v1_chr19_+_23215704_23215723	1.55647	bHLH_family.p2	AK028544|Klf9|16601|Kruppel-like factor 9	NM_010638|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr13_+_3537514_3537611	1.55552	bHLH_family.p2	L36314|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr4_-_148800458_148800500	1.55519	bHLH_family.p2	BC067402|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr2_+_155436947_155436947	1.55415	bHLH_family.p2	NM_001085378|Myh7b|668940|myosin, heavy chain 7B, cardiac muscle, beta
mm9_v1_chr16_-_92697567_92697590	1.54835	bHLH_family.p2	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr11_+_52578152_52578230	1.54713	bHLH_family.p2	AK046350|Fstl4|320027|follistatin-like 4	AK081114|Fstl4|320027|follistatin-like 4	AF374459|Fstl4|320027|follistatin-like 4	NM_177059|Fstl4|320027|follistatin-like 4	BC132353|Fstl4|320027|follistatin-like 4	BC144824|Fstl4|320027|follistatin-like 4
mm9_v1_chr1_-_44175585_44175667	1.54656	bHLH_family.p2	BC023141|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK079701|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK007835|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK035391|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK053315|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK035899|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	NM_023645|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK077468|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1	AK170300|Kdelc1|72050|KDEL (Lys-Asp-Glu-Leu) containing 1
mm9_v1_chr5_+_28397902_28397951	1.54602	bHLH_family.p2	AK135941|Insig1|231070|insulin induced gene 1	AK135989|Insig1|231070|insulin induced gene 1	AK139913|Insig1|231070|insulin induced gene 1	AK151186|Insig1|231070|insulin induced gene 1	AK088380|Insig1|231070|insulin induced gene 1	AF527630|Insig1|231070|insulin induced gene 1	BC132167|Insig1|231070|insulin induced gene 1	BC132499|Insig1|231070|insulin induced gene 1	BC079559|Insig1|231070|insulin induced gene 1	NM_153526|Insig1|231070|insulin induced gene 1
mm9_v1_chr14_-_119105340_119105428	1.54487	bHLH_family.p2	BC150822|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	BC171974|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	AK157723|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr1_+_75356876_75356905	1.54336	bHLH_family.p2	AK132391|Des|13346|desmin
mm9_v1_chr5_+_98683202_98683430	1.54311	bHLH_family.p2	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr1_-_129998984_129999039	1.54223	bHLH_family.p2	BC066035|Zranb3|226409|zinc finger, RAN-binding domain containing 3	NM_027678|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK042139|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK083641|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK084943|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK085488|Zranb3|226409|zinc finger, RAN-binding domain containing 3
mm9_v1_chr9_-_89599660_89599893	1.54116	bHLH_family.p2	BC023338|Tmed3|66111|transmembrane emp24 domain containing 3	AK007544|Tmed3|66111|transmembrane emp24 domain containing 3	AK002698|Tmed3|66111|transmembrane emp24 domain containing 3	AK004545|Tmed3|66111|transmembrane emp24 domain containing 3	NM_025360|Tmed3|66111|transmembrane emp24 domain containing 3
mm9_v1_chr4_+_151413427_151413471	1.5407	bHLH_family.p2	AK047599|Nol9|74035|nucleolar protein 9	AK164493|Nol9|74035|nucleolar protein 9	NM_001159599|Nol9|74035|nucleolar protein 9	NM_028727|Nol9|74035|nucleolar protein 9	BC024877|Nol9|74035|nucleolar protein 9	AK172043|Nol9|74035|nucleolar protein 9	AK014568|Nol9|74035|nucleolar protein 9	AK050948|Nol9|74035|nucleolar protein 9	AK157956|Nol9|74035|nucleolar protein 9	BC125432|Nol9|74035|nucleolar protein 9	BC132099|Nol9|74035|nucleolar protein 9	AK157398|Nol9|74035|nucleolar protein 9	AK079935|Nol9|74035|nucleolar protein 9	AK046761|Nol9|74035|nucleolar protein 9	BC096599|Nol9|74035|nucleolar protein 9	AK042581|Nol9|74035|nucleolar protein 9	BC051109|Nol9|74035|nucleolar protein 9
mm9_v1_chr9_+_44187572_44187715	1.53844	bHLH_family.p2	NM_021395|Hyou1|12282|hypoxia up-regulated 1	AK128937|Hyou1|12282|hypoxia up-regulated 1	AK155721|Hyou1|12282|hypoxia up-regulated 1	AK145857|Hyou1|12282|hypoxia up-regulated 1	AK171769|Hyou1|12282|hypoxia up-regulated 1	BC058255|Hyou1|12282|hypoxia up-regulated 1	AK157949|Hyou1|12282|hypoxia up-regulated 1	BC019785|Hyou1|12282|hypoxia up-regulated 1	BC050107|Hyou1|12282|hypoxia up-regulated 1
mm9_v1_chr1_-_155396839_155396845	1.53809	bHLH_family.p2	BC022734|Npl|74091|N-acetylneuraminate pyruvate lyase	AK154216|F630010C12Rik|100038670|RIKEN cDNA F630010C12 gene	AK002734|Npl|74091|N-acetylneuraminate pyruvate lyase	NM_028749|Npl|74091|N-acetylneuraminate pyruvate lyase	AK088859|Npl|74091|N-acetylneuraminate pyruvate lyase
mm9_v1_chr11_-_115353104_115353170	1.53775	bHLH_family.p2	AF078840|Nt5c|50773|5',3'-nucleotidase, cytosolic	NM_015807|Nt5c|50773|5',3'-nucleotidase, cytosolic	BC024368|Nt5c|50773|5',3'-nucleotidase, cytosolic	AK007418|Nt5c|50773|5',3'-nucleotidase, cytosolic
mm9_v1_chr7_+_52071438_52071457	1.53764	bHLH_family.p2	AK171455|Nup62|18226|nucleoporin 62	AK171611|Nup62|18226|nucleoporin 62
mm9_v1_chr10_-_80363422_80363432	1.53535	bHLH_family.p2	AK176965|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr11_+_40547368_40547508	1.53507	bHLH_family.p2	AK031779|Nudcd2|52653|NudC domain containing 2	AK012388|Nudcd2|52653|NudC domain containing 2	BC005646|Nudcd2|52653|NudC domain containing 2
mm9_v1_chr17_-_34764290_34764395	1.5349	bHLH_family.p2	BC052330|Ppt2|54397|palmitoyl-protein thioesterase 2
mm9_v1_chr6_+_56952293_56952348	1.53427	bHLH_family.p2	BC125532|Vmn1r6|171193|vomeronasal 1 receptor 6	BC125534|Vmn1r6|171193|vomeronasal 1 receptor 6	NM_134175|Vmn1r6|171193|vomeronasal 1 receptor 6
mm9_v1_chr4_+_106233690_106233781	1.53379	bHLH_family.p2	BC019797|Dhcr24|74754|24-dehydrocholesterol reductase	AY039762|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr15_+_9001154_9001214	1.53361	bHLH_family.p2	BC115776|1110020G09Rik|68646|RIKEN cDNA 1110020G09 gene
mm9_v1_chr5_+_142877419_142877473	1.53205	bHLH_family.p2	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr2_-_84662710_84662808	1.5319	bHLH_family.p2	AK003989|Smtnl1|68678|smoothelin-like 1	BC002317|Smtnl1|68678|smoothelin-like 1	NM_024230|Smtnl1|68678|smoothelin-like 1
mm9_v1_chr11_-_102559011_102559087	1.53143	bHLH_family.p2	AK166820|Ccdc43|52715|coiled-coil domain containing 43	AK009319|Ccdc43|52715|coiled-coil domain containing 43	AK011254|Ccdc43|52715|coiled-coil domain containing 43	NM_025918|Ccdc43|52715|coiled-coil domain containing 43	AK028834|Ccdc43|52715|coiled-coil domain containing 43	AK161543|Ccdc43|52715|coiled-coil domain containing 43	BC058520|Ccdc43|52715|coiled-coil domain containing 43	BC061076|Ccdc43|52715|coiled-coil domain containing 43
mm9_v1_chr11_+_53333270_53333474	1.53143	bHLH_family.p2	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr18_-_34166572_34166697	1.53051	bHLH_family.p2	BC007166|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a	BC013557|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a	AK161182|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr15_-_79158526_79158679	1.53035	bHLH_family.p2	BC049778|Pla2g6|53357|phospholipase A2, group VI	BC003487|Pla2g6|53357|phospholipase A2, group VI	AK153333|Pla2g6|53357|phospholipase A2, group VI	BC052845|Pla2g6|53357|phospholipase A2, group VI	AK144495|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr7_-_50745358_50745392	1.52929	bHLH_family.p2	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr6_+_120786323_120786357	1.52822	bHLH_family.p2	AK195055|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC027307|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr16_-_91647216_91647232	1.52768	bHLH_family.p2	NM_010256|Gart|14450|phosphoribosylglycinamide formyltransferase
mm9_v1_chr10_-_94879369_94879430	1.52162	bHLH_family.p2	AK137403|Socs2|216233|suppressor of cytokine signaling 2	AK144810|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr11_-_5344795_5344912	1.5213	bHLH_family.p2	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chr10_-_93352428_93352466	1.5202	bHLH_family.p2	AB003144|Metap2|56307|methionine aminopeptidase 2	AK090323|Metap2|56307|methionine aminopeptidase 2	AK076804|Metap2|56307|methionine aminopeptidase 2
mm9_v1_chr17_-_31649139_31649255	1.51964	bHLH_family.p2	AK213574|Wdr4|57773|WD repeat domain 4	AK164160|Wdr4|57773|WD repeat domain 4	AJ271892|Wdr4|57773|WD repeat domain 4	AJ271893|Wdr4|57773|WD repeat domain 4	AK035125|Wdr4|57773|WD repeat domain 4	BC039272|Wdr4|57773|WD repeat domain 4	AK152271|Wdr4|57773|WD repeat domain 4	AK153161|Wdr4|57773|WD repeat domain 4	AK144821|Wdr4|57773|WD repeat domain 4
mm9_v1_chr3_+_129235284_129235325	1.51941	bHLH_family.p2	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr10_-_128063522_128063566	1.51796	bHLH_family.p2	BC100456|Rps26|27370|ribosomal protein S26	AK010689|Rps26|27370|ribosomal protein S26	AK008301|Rps26|27370|ribosomal protein S26	AK012722|Rps26|27370|ribosomal protein S26	AK018702|Rps26|27370|ribosomal protein S26	AK152132|Rps26|27370|ribosomal protein S26	NM_013765|Rps26|27370|ribosomal protein S26
mm9_v1_chr7_-_15208414_15208414	1.51682	bHLH_family.p2	AK140342|Vmn1r90|627280|vomeronasal 1 receptor 90	NM_001039146|Vmn1r90|627280|vomeronasal 1 receptor 90
mm9_v1_chr11_+_95198329_95198359	1.51613	bHLH_family.p2	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr2_-_130732079_130732106	1.51588	bHLH_family.p2	AK166222|A730017L22Rik|613258|RIKEN cDNA A730017L22 gene	AK042707|A730017L22Rik|613258|RIKEN cDNA A730017L22 gene
mm9_v1_chrX_-_71527052_71527074	1.51289	bHLH_family.p2	AK009174|Dnase1l1|69537|deoxyribonuclease 1-like 1	NM_027109|Dnase1l1|69537|deoxyribonuclease 1-like 1
mm9_v1_chr7_-_105509797_105509909	1.51064	bHLH_family.p2	AK035461|Tsku|244152|tsukushin	AK053973|Tsku|244152|tsukushin	AK137208|Tsku|244152|tsukushin	NM_001024619|Tsku|244152|tsukushin	NM_001168540|Tsku|244152|tsukushin	NM_001168541|Tsku|244152|tsukushin	NM_001168539|Tsku|244152|tsukushin
mm9_v1_chr13_+_99124196_99124209	1.50927	bHLH_family.p2	AK164408|Foxd1|15229|forkhead box D1	AK142034|Foxd1|15229|forkhead box D1	AK132390|Foxd1|15229|forkhead box D1	AK142838|Foxd1|15229|forkhead box D1	NM_008242|Foxd1|15229|forkhead box D1	L38607|Foxd1|15229|forkhead box D1
mm9_v1_chr1_+_182499091_182499136	1.50923	bHLH_family.p2	AK030889|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK088679|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	BC012041|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	NM_007415|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK167699|Parp1|11545|poly (ADP-ribose) polymerase family, member 1
mm9_v1_chr7_-_29766721_29766882	1.5073	bHLH_family.p2	AK037834|Eif3k|73830|eukaryotic translation initiation factor 3, subunit K	BC027638|Eif3k|73830|eukaryotic translation initiation factor 3, subunit K	BC091749|Eif3k|73830|eukaryotic translation initiation factor 3, subunit K	AK004664|Eif3k|73830|eukaryotic translation initiation factor 3, subunit K	NM_028659|Eif3k|73830|eukaryotic translation initiation factor 3, subunit K	AK158875|Eif3k|73830|eukaryotic translation initiation factor 3, subunit K
mm9_v1_chr8_+_72426082_72426113	1.5072	bHLH_family.p2	BC049542|Tssk6|83984|testis-specific serine kinase 6	AF329484|Tssk6|83984|testis-specific serine kinase 6	NM_032004|Tssk6|83984|testis-specific serine kinase 6
mm9_v1_chr11_-_45768976_45768987	1.50577	bHLH_family.p2	BC092541|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	AK017532|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm9_v1_chr6_-_95668770_95668830	1.5055	bHLH_family.p2	BC080781|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK045176|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK042987|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK156263|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK167136|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172363|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172561|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172633|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	NM_011507|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit
mm9_v1_chr13_+_100894802_100894858	1.50503	bHLH_family.p2	NM_011420|Smn1|20595|survival motor neuron 1	AK144778|Smn1|20595|survival motor neuron 1	AK167832|Smn1|20595|survival motor neuron 1	Y12835|Smn1|20595|survival motor neuron 1	U63294|Smn1|20595|survival motor neuron 1	AK152495|Smn1|20595|survival motor neuron 1	AK012698|Smn1|20595|survival motor neuron 1	BC045158|Smn1|20595|survival motor neuron 1	AY821785|Smn1|20595|survival motor neuron 1	AY821786|Smn1|20595|survival motor neuron 1	AY821787|Smn1|20595|survival motor neuron 1	U77714|Smn1|20595|survival motor neuron 1
mm9_v1_chrX_-_92640149_92640178	1.50367	bHLH_family.p2	BC053442|Fam123b|72345|family with sequence similarity 123, member B	AK012651|Fam123b|72345|family with sequence similarity 123, member B	AK049774|Fam123b|72345|family with sequence similarity 123, member B	NM_175179|Fam123b|72345|family with sequence similarity 123, member B
mm9_v1_chr19_+_42120340_42120387	1.50223	bHLH_family.p2	AK002457|Hoga1|67432|4-hydroxy-2-oxoglutarate aldolase 1	NM_026152|Hoga1|67432|4-hydroxy-2-oxoglutarate aldolase 1	BC016430|Hoga1|67432|4-hydroxy-2-oxoglutarate aldolase 1	AK010857|Hoga1|67432|4-hydroxy-2-oxoglutarate aldolase 1
mm9_v1_chr4_+_108507258_108507370	1.50074	bHLH_family.p2	BC006857|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	NM_025334|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	AK002862|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	AK003481|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	AY548113|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)
mm9_v1_chr19_+_23216035_23216244	1.49541	bHLH_family.p2	CT010185|Klf9|16601|Kruppel-like factor 9	Y14296|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr1_+_134088010_134088033	1.49173	bHLH_family.p2	AK144269|Lemd1|213409|LEM domain containing 1	NM_001033250|Lemd1|213409|LEM domain containing 1	BC115462|Lemd1|213409|LEM domain containing 1	BC115463|Lemd1|213409|LEM domain containing 1	BC066109|Lemd1|213409|LEM domain containing 1
mm9_v1_chr5_-_31210054_31210143	1.49065	bHLH_family.p2	BC082316|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK002453|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK005413|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK009384|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK010297|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	NM_001134692|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	BC002177|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK019285|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK002224|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)	AK003569|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)
mm9_v1_chr5_+_106128934_106129078	1.49022	bHLH_family.p2	AK137459|Lrrc8d|231549|leucine rich repeat containing 8D	NM_001122768|Lrrc8d|231549|leucine rich repeat containing 8D	AK046249|Lrrc8d|231549|leucine rich repeat containing 8D	AK080722|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr14_+_21522300_21522310	1.49021	bHLH_family.p2	AK010311|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1
mm9_v1_chr5_+_92391921_92391932	1.48911	bHLH_family.p2	AK039179|Thap6|381650|THAP domain containing 6	AK080650|Thap6|381650|THAP domain containing 6
mm9_v1_chrX_+_68809163_68809181	1.48862	bHLH_family.p2	NM_008253|Hmgb3|15354|high mobility group box 3	AK032163|Hmgb3|15354|high mobility group box 3
mm9_v1_chr11_+_103032358_103032714	1.48814	bHLH_family.p2	NM_001077698|Fmnl1|57778|formin-like 1	NM_019679|Fmnl1|57778|formin-like 1	AF215666|Fmnl1|57778|formin-like 1	AF006466|Fmnl1|57778|formin-like 1
mm9_v1_chr11_+_110927475_110927548	1.48742	bHLH_family.p2	AK044915|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	NM_008425|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	X73052|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2
mm9_v1_chr9_+_55937776_55937786	1.48604	bHLH_family.p2	X96700|Pstpip1|19200|proline-serine-threonine phosphatase-interacting protein 1	AK037936|Pstpip1|19200|proline-serine-threonine phosphatase-interacting protein 1	AK088150|Pstpip1|19200|proline-serine-threonine phosphatase-interacting protein 1	NM_011193|Pstpip1|19200|proline-serine-threonine phosphatase-interacting protein 1
mm9_v1_chr1_+_75356913_75356925	1.48564	bHLH_family.p2	BC031760|Des|13346|desmin	NM_010043|Des|13346|desmin
mm9_v1_chr16_-_18248701_18248813	1.4853	bHLH_family.p2	AK008276|Ranbp1|19385|RAN binding protein 1	AK002989|Ranbp1|19385|RAN binding protein 1	AK151167|Ranbp1|19385|RAN binding protein 1	AK153074|Ranbp1|19385|RAN binding protein 1	AK167053|Ranbp1|19385|RAN binding protein 1	AK088781|Ranbp1|19385|RAN binding protein 1	AK166642|Ranbp1|19385|RAN binding protein 1	NM_011239|Ranbp1|19385|RAN binding protein 1	X56045|Ranbp1|19385|RAN binding protein 1	X56046|Ranbp1|19385|RAN binding protein 1	BC061140|Ranbp1|19385|RAN binding protein 1
mm9_v1_chr7_-_108971734_108971860	1.48076	bHLH_family.p2	
mm9_v1_chr5_-_23897960_23897960	1.48046	bHLH_family.p2	AY495541|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)	AY515313|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)	NM_001002897|Atg9b|213948|ATG9 autophagy related 9 homolog B (S. cerevisiae)
mm9_v1_chr5_-_30848154_30848208	1.47934	bHLH_family.p2	BC099558|Cib4|73259|calcium and integrin binding family member 4	BC118938|Cib4|73259|calcium and integrin binding family member 4	AK006670|Cib4|73259|calcium and integrin binding family member 4	NM_028483|Cib4|73259|calcium and integrin binding family member 4
mm9_v1_chr13_-_38085986_38086062	1.47768	bHLH_family.p2	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr3_+_107397948_107398023	1.47668	bHLH_family.p2	NM_007441|Alx3|11694|aristaless-like homeobox 3	U96109|Alx3|11694|aristaless-like homeobox 3	AK142019|Alx3|11694|aristaless-like homeobox 3
mm9_v1_chr9_+_119250349_119250411	1.47554	bHLH_family.p2	AY273811|Acaa1a|113868|acetyl-Coenzyme A acyltransferase 1A	NM_130864|Acaa1a|113868|acetyl-Coenzyme A acyltransferase 1A
mm9_v1_chr17_-_71351775_71351878	1.4751	bHLH_family.p2	NM_026064|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr5_+_123794626_123794632	1.47148	bHLH_family.p2	BC046777|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr4_-_131700278_131700485	1.47146	bHLH_family.p2	S66181|Oprd1|18386|opioid receptor, delta 1	L11064|Oprd1|18386|opioid receptor, delta 1	S65335|Oprd1|18386|opioid receptor, delta 1	BC137958|Oprd1|18386|opioid receptor, delta 1	BC137969|Oprd1|18386|opioid receptor, delta 1	L07271|Oprd1|18386|opioid receptor, delta 1	L06322|Oprd1|18386|opioid receptor, delta 1	AK043873|Oprd1|18386|opioid receptor, delta 1	NM_013622|Oprd1|18386|opioid receptor, delta 1
mm9_v1_chr19_+_10680032_10680173	1.4712	bHLH_family.p2	AK155020|Ddb1|13194|damage specific DNA binding protein 1	AK157491|Ddb1|13194|damage specific DNA binding protein 1	AK152228|Ddb1|13194|damage specific DNA binding protein 1	AK146522|Ddb1|13194|damage specific DNA binding protein 1	AK155920|Ddb1|13194|damage specific DNA binding protein 1	AK154303|Ddb1|13194|damage specific DNA binding protein 1	AB026432|Ddb1|13194|damage specific DNA binding protein 1	NM_015735|Ddb1|13194|damage specific DNA binding protein 1	AK145328|Ddb1|13194|damage specific DNA binding protein 1	BC009661|Ddb1|13194|damage specific DNA binding protein 1	AF159853|Ddb1|13194|damage specific DNA binding protein 1
mm9_v1_chr1_+_93076398_93076398	1.4705	bHLH_family.p2	AK144331|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	NM_001168392|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	NM_016894|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	NM_178401|Ramp1|51801|receptor (calcitonin) activity modifying protein 1
mm9_v1_chr16_-_18248659_18248687	1.46929	bHLH_family.p2	L25255|Ranbp1|19385|RAN binding protein 1
mm9_v1_chrX_-_71618617_71618655	1.468	bHLH_family.p2	BC023050|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	AK041958|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr1_-_165242744_165242943	1.46798	bHLH_family.p2	AK031075|Prrx1|18933|paired related homeobox 1	AB221686|Prrx1|18933|paired related homeobox 1	X59725|Prrx1|18933|paired related homeobox 1	L06502|Prrx1|18933|paired related homeobox 1
mm9_v1_chr11_-_118263125_118263276	1.46749	bHLH_family.p2	AK152182|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK155031|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK137836|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	L16894|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	BC090658|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	NM_011150|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	X67809|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK153313|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK153396|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK079915|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK150021|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein
mm9_v1_chr1_+_167390705_167390767	1.46678	bHLH_family.p2	AK147721|Brp44|70456|brain protein 44	AK147792|Brp44|70456|brain protein 44
mm9_v1_chr11_+_96790581_96790782	1.46429	bHLH_family.p2	AK090284|Prr15l|217138|proline rich 15-like	BC034213|Prr15l|217138|proline rich 15-like	AK077279|Prr15l|217138|proline rich 15-like	BC022765|Prr15l|217138|proline rich 15-like	NM_146026|Prr15l|217138|proline rich 15-like	BC036171|Prr15l|217138|proline rich 15-like	BC034192|Prr15l|217138|proline rich 15-like	BC024510|Prr15l|217138|proline rich 15-like	AK087566|Prr15l|217138|proline rich 15-like
mm9_v1_chr7_-_106289649_106289650	1.46426	bHLH_family.p2	AK154903|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr4_-_118993081_118993127	1.46127	bHLH_family.p2	BC050116|Ppih|66101|peptidyl prolyl isomerase H	BC016565|Ppih|66101|peptidyl prolyl isomerase H	BC098490|Ppih|66101|peptidyl prolyl isomerase H	AK136330|Ppih|66101|peptidyl prolyl isomerase H	AK005202|Ppih|66101|peptidyl prolyl isomerase H	AK014665|Ppih|66101|peptidyl prolyl isomerase H	AK164299|Ppih|66101|peptidyl prolyl isomerase H	AK003179|Ppih|66101|peptidyl prolyl isomerase H	AK008394|Ppih|66101|peptidyl prolyl isomerase H	AK134995|Ppih|66101|peptidyl prolyl isomerase H	NM_001110129|Ppih|66101|peptidyl prolyl isomerase H	NM_001110130|Ppih|66101|peptidyl prolyl isomerase H	NM_028677|Ppih|66101|peptidyl prolyl isomerase H
mm9_v1_chr11_-_95448869_95449017	1.4612	bHLH_family.p2	AF105292|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	BC038365|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	AK037248|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	NM_033217|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)
mm9_v1_chr5_-_92391867_92391880	1.46094	bHLH_family.p2	BC023138|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK078397|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr7_-_106289651_106289675	1.46033	bHLH_family.p2	NM_178635|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr10_-_41738158_41738199	1.46002	bHLH_family.p2	AK011447|Armc2|213402|armadillo repeat containing 2	NM_001034858|Armc2|213402|armadillo repeat containing 2
mm9_v1_chr4_+_98590565_98590631	1.45665	bHLH_family.p2	BC018179|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr19_-_46380070_46380120	1.45581	bHLH_family.p2	AK156394|4833438C02Rik|107243|RIKEN cDNA 4833438C02 gene	AK029443|4833438C02Rik|107243|RIKEN cDNA 4833438C02 gene
mm9_v1_chr9_-_86358490_86358538	1.45555	bHLH_family.p2	BC115687|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	BC115686|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK049229|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	NM_027394|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK011446|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein
mm9_v1_chr18_+_75527015_75527182	1.45411	bHLH_family.p2	NM_001042660|Smad7|17131|MAD homolog 7 (Drosophila)	AK013237|Smad7|17131|MAD homolog 7 (Drosophila)	AJ000550|Smad7|17131|MAD homolog 7 (Drosophila)
mm9_v1_chr3_+_57229362_57229380	1.454	bHLH_family.p2	AK148484|Tm4sf4|229302|transmembrane 4 superfamily member 4	AK165731|Tm4sf4|229302|transmembrane 4 superfamily member 4	BC010814|Tm4sf4|229302|transmembrane 4 superfamily member 4
mm9_v1_chr12_-_36219651_36219745	1.45156	bHLH_family.p2	AK153678|Ahr|11622|aryl-hydrocarbon receptor	NM_013464|Ahr|11622|aryl-hydrocarbon receptor	AK155380|Ahr|11622|aryl-hydrocarbon receptor
mm9_v1_chr11_-_120412426_120412447	1.45138	bHLH_family.p2	BC115957|Dysfip1|68701|dysferlin interacting protein 1	AK004064|Dysfip1|68701|dysferlin interacting protein 1	NM_026814|Dysfip1|68701|dysferlin interacting protein 1
mm9_v1_chr11_+_117193732_117193733	1.45048	bHLH_family.p2	
mm9_v1_chr11_-_75161767_75161884	1.45043	bHLH_family.p2	AK177196|Rpa1|68275|replication protein A1	AK197958|Rpa1|68275|replication protein A1	AK203654|Rpa1|68275|replication protein A1	AK167598|Rpa1|68275|replication protein A1	AK150785|Rpa1|68275|replication protein A1	AK165316|Rpa1|68275|replication protein A1	BC019119|Rpa1|68275|replication protein A1	AK035084|Rpa1|68275|replication protein A1	AK152296|Rpa1|68275|replication protein A1	AK153107|Rpa1|68275|replication protein A1	AK165944|Rpa1|68275|replication protein A1	AK169599|Rpa1|68275|replication protein A1	AK148035|Rpa1|68275|replication protein A1	AK168400|Rpa1|68275|replication protein A1	AK151590|Rpa1|68275|replication protein A1	AK153144|Rpa1|68275|replication protein A1	NM_001164223|Rpa1|68275|replication protein A1	NM_026653|Rpa1|68275|replication protein A1
mm9_v1_chr16_-_91647153_91647201	1.44701	bHLH_family.p2	AK146478|Gart|14450|phosphoribosylglycinamide formyltransferase	BC070465|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168876|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168445|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168864|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168458|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168501|Gart|14450|phosphoribosylglycinamide formyltransferase	U01023|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168724|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168796|Gart|14450|phosphoribosylglycinamide formyltransferase	AK146355|Gart|14450|phosphoribosylglycinamide formyltransferase
mm9_v1_chr9_+_82723787_82723813	1.44524	bHLH_family.p2	AJ242722|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr18_+_35989376_35989483	1.44369	bHLH_family.p2	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr15_+_10415766_10415913	1.44145	bHLH_family.p2	NM_011232|Rad1|19355|RAD1 homolog (S. pombe)	AK146533|Rad1|19355|RAD1 homolog (S. pombe)	AK164168|Rad1|19355|RAD1 homolog (S. pombe)	AK148098|Rad1|19355|RAD1 homolog (S. pombe)	BC048693|Rad1|19355|RAD1 homolog (S. pombe)	AK168588|Rad1|19355|RAD1 homolog (S. pombe)	AF073523|Rad1|19355|RAD1 homolog (S. pombe)	AK150466|Rad1|19355|RAD1 homolog (S. pombe)	AF038841|Rad1|19355|RAD1 homolog (S. pombe)	AF084514|Rad1|19355|RAD1 homolog (S. pombe)
mm9_v1_chr11_+_74644411_74644428	1.43918	bHLH_family.p2	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr4_+_106233807_106233880	1.43587	bHLH_family.p2	AK017937|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr7_-_134417572_134417575	1.43439	bHLH_family.p2	AK077573|Sephs2|20768|selenophosphate synthetase 2	AK168722|Sephs2|20768|selenophosphate synthetase 2	AK168965|Sephs2|20768|selenophosphate synthetase 2	NM_009266|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr4_-_129255652_129255823	1.43431	bHLH_family.p2	AK134621|Fam167b|230766|family with sequence similarity 167, member B	BC030183|Fam167b|230766|family with sequence similarity 167, member B	AK143928|Fam167b|230766|family with sequence similarity 167, member B	NM_182783|Fam167b|230766|family with sequence similarity 167, member B
mm9_v1_chr7_+_86059126_86059232	1.43422	bHLH_family.p2	CT010213|Isg20|57444|interferon-stimulated protein
mm9_v1_chr7_+_4967081_4967115	1.43403	bHLH_family.p2	AK154328|Zfp524|66056|zinc finger protein 524	BC019995|Zfp524|66056|zinc finger protein 524	AK011620|Zfp524|66056|zinc finger protein 524	NM_025324|Zfp524|66056|zinc finger protein 524	AK009053|Zfp524|66056|zinc finger protein 524	AK002594|Zfp524|66056|zinc finger protein 524
mm9_v1_chr14_+_79249036_79249063	1.43383	bHLH_family.p2	AK033642|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	AK004956|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	BC019143|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene
mm9_v1_chr4_-_11118342_11118420	1.43134	bHLH_family.p2	AK080292|A630034I12Rik|329790|RIKEN cDNA A630034I12 gene	AK169448|A630034I12Rik|329790|RIKEN cDNA A630034I12 gene
mm9_v1_chr5_+_91503642_91503677	1.43023	bHLH_family.p2	NM_007950|Ereg|13874|epiregulin	D30782|Ereg|13874|epiregulin	BC027838|Ereg|13874|epiregulin
mm9_v1_chr2_+_167328880_167328942	1.42796	bHLH_family.p2	AK148290|Rnf114|81018|ring finger protein 114	AK079751|Rnf114|81018|ring finger protein 114	AK088441|Rnf114|81018|ring finger protein 114	AK148392|Rnf114|81018|ring finger protein 114	AF502145|Rnf114|81018|ring finger protein 114	AF282919|Rnf114|81018|ring finger protein 114	AK150086|Rnf114|81018|ring finger protein 114	AK150263|Rnf114|81018|ring finger protein 114	AK152687|Rnf114|81018|ring finger protein 114
mm9_v1_chr9_-_87150115_87150171	1.42753	bHLH_family.p2	BC004073|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC064713|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC150998|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC151006|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC151104|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene
mm9_v1_chr4_+_115769086_115769178	1.4272	bHLH_family.p2	AK217820|Lrrc41|230654|leucine rich repeat containing 41
mm9_v1_chr11_+_114712845_114712854	1.42719	bHLH_family.p2	NM_001110337|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C	NM_001110338|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C	AY079516|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr19_+_9026020_9026327	1.4255	bHLH_family.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr3_-_88905775_88905882	1.42451	bHLH_family.p2	AF309508|Fdps|110196|farnesyl diphosphate synthetase	AK168008|Fdps|110196|farnesyl diphosphate synthetase	AK088601|Fdps|110196|farnesyl diphosphate synthetase	AK166026|Fdps|110196|farnesyl diphosphate synthetase	BC087886|Fdps|110196|farnesyl diphosphate synthetase	AK077979|Fdps|110196|farnesyl diphosphate synthetase	AK151742|Fdps|110196|farnesyl diphosphate synthetase	BC048497|Fdps|110196|farnesyl diphosphate synthetase	NM_134469|Fdps|110196|farnesyl diphosphate synthetase	AK140881|Fdps|110196|farnesyl diphosphate synthetase
mm9_v1_chr14_-_55725370_55725429	1.42287	bHLH_family.p2	AK052384|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	BC080798|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	BC108374|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	AK151844|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	AK147177|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit	NM_007455|Ap1g2|11766|adaptor protein complex AP-1, gamma 2 subunit
mm9_v1_chr8_+_109127326_109127398	1.42156	bHLH_family.p2	X06115|Cdh1|12550|cadherin 1
mm9_v1_chr10_-_80630456_80630508	1.42098	bHLH_family.p2	AK131903|Pias4|59004|protein inhibitor of activated STAT 4	AK076943|Pias4|59004|protein inhibitor of activated STAT 4	BC025159|Pias4|59004|protein inhibitor of activated STAT 4	NM_021501|Pias4|59004|protein inhibitor of activated STAT 4	AK131822|Pias4|59004|protein inhibitor of activated STAT 4	AK148066|Pias4|59004|protein inhibitor of activated STAT 4	AK147813|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr2_+_74529947_74530004	1.41985	bHLH_family.p2	AK134330|Hoxd10|15430|homeobox D10	BC048690|Hoxd10|15430|homeobox D10	NM_013554|Hoxd10|15430|homeobox D10
mm9_v1_chr2_-_152422160_152422220	1.41689	bHLH_family.p2	BC132226|Defb45|433490|defensin beta 45	BC132228|Defb45|433490|defensin beta 45	AY591384|Defb45|433490|defensin beta 45	DQ012038|Defb45|433490|defensin beta 45	AK005919|Defb45|433490|defensin beta 45	NM_001037752|Defb45|433490|defensin beta 45
mm9_v1_chr3_-_58495986_58496041	1.41642	bHLH_family.p2	Z19581|Siah2|20439|seven in absentia 2
mm9_v1_chr1_+_95375503_95375639	1.41534	bHLH_family.p2	NM_001159717|Sept2|18000|septin 2	NM_001159718|Sept2|18000|septin 2	NM_010891|Sept2|18000|septin 2	AK146616|Sept2|18000|septin 2	AK151591|Sept2|18000|septin 2	AK028072|Sept2|18000|septin 2	AK171331|Sept2|18000|septin 2	D49382|Sept2|18000|septin 2	NM_001159719|Sept2|18000|septin 2
mm9_v1_chr4_-_129349948_129350020	1.41513	bHLH_family.p2	AK084212|Kpna6|16650|karyopherin (importin) alpha 6	AK046371|Kpna6|16650|karyopherin (importin) alpha 6	AK154882|Kpna6|16650|karyopherin (importin) alpha 6	NM_008468|Kpna6|16650|karyopherin (importin) alpha 6
mm9_v1_chr7_+_86059105_86059120	1.41408	bHLH_family.p2	AK008139|Isg20|57444|interferon-stimulated protein	AK008171|Isg20|57444|interferon-stimulated protein	AK008353|Isg20|57444|interferon-stimulated protein	NM_001113527|Isg20|57444|interferon-stimulated protein
mm9_v1_chr10_-_127325698_127325715	1.41269	bHLH_family.p2	BC093514|Rdh7|54150|retinol dehydrogenase 7	BC092255|Rdh7|54150|retinol dehydrogenase 7
mm9_v1_chr3_+_51028796_51028896	1.41143	bHLH_family.p2	AK084516|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK041713|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF199491|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chrX_+_68809128_68809157	1.41011	bHLH_family.p2	BC011276|Hmgb3|15354|high mobility group box 3	BC158037|Hmgb3|15354|high mobility group box 3
mm9_v1_chr11_+_60231046_60231167	1.40958	bHLH_family.p2	AK077759|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AJ404329|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr7_-_107007359_107007399	1.40782	bHLH_family.p2	AK134578|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	NM_025668|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK017504|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK168173|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr17_-_28759356_28759496	1.40621	bHLH_family.p2	AB012290|Srpk1|20815|serine/arginine-rich protein specific kinase 1	BC005707|Srpk1|20815|serine/arginine-rich protein specific kinase 1	AK161346|Srpk1|20815|serine/arginine-rich protein specific kinase 1	AK161388|Srpk1|20815|serine/arginine-rich protein specific kinase 1	AJ224115|Srpk1|20815|serine/arginine-rich protein specific kinase 1	AK017187|Srpk1|20815|serine/arginine-rich protein specific kinase 1	BC050761|Srpk1|20815|serine/arginine-rich protein specific kinase 1	NM_016795|Srpk1|20815|serine/arginine-rich protein specific kinase 1	AK151152|Srpk1|20815|serine/arginine-rich protein specific kinase 1	AK141271|Srpk1|20815|serine/arginine-rich protein specific kinase 1
mm9_v1_chr5_+_142877515_142877558	1.40508	bHLH_family.p2	AK144418|Foxk1|17425|forkhead box K1
mm9_v1_chr8_-_72426456_72426456	1.40487	bHLH_family.p2	BC034899|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	NM_023312|Ndufa13|67184|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
mm9_v1_chr2_+_69058005_69058054	1.40448	bHLH_family.p2	AK148450|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	Z47787|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	BC111905|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	AK148465|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	NM_021331|G6pc2|14378|glucose-6-phosphatase, catalytic, 2
mm9_v1_chr10_-_80630518_80630667	1.4039	bHLH_family.p2	AK145367|Pias4|59004|protein inhibitor of activated STAT 4	AF109174|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr9_+_77765170_77765271	1.40295	bHLH_family.p2	AK031743|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK162451|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	NM_134255|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK051580|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK045274|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085663|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085696|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK028761|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK167755|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168360|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK088153|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168987|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	BC022911|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm9_v1_chr8_+_121961044_121961092	1.40151	bHLH_family.p2	BC022135|Osgin1|71839|oxidative stress induced growth inhibitor 1	NM_027950|Osgin1|71839|oxidative stress induced growth inhibitor 1	BC006032|Osgin1|71839|oxidative stress induced growth inhibitor 1	BC110674|Osgin1|71839|oxidative stress induced growth inhibitor 1	BC132440|Osgin1|71839|oxidative stress induced growth inhibitor 1	BC138192|Osgin1|71839|oxidative stress induced growth inhibitor 1
mm9_v1_chr18_+_58819093_58819192	1.40097	bHLH_family.p2	AK165542|Isoc1|66307|isochorismatase domain containing 1	BC016576|Isoc1|66307|isochorismatase domain containing 1	AY035213|Isoc1|66307|isochorismatase domain containing 1	NM_025478|Isoc1|66307|isochorismatase domain containing 1	AK134794|Isoc1|66307|isochorismatase domain containing 1	AK152763|Isoc1|66307|isochorismatase domain containing 1	AK153257|Isoc1|66307|isochorismatase domain containing 1
mm9_v1_chr5_+_138613248_138613363	1.40053	bHLH_family.p2	AK031638|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	NM_021392|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	AK165187|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	BC011174|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1
mm9_v1_chr9_+_70526985_70526997	1.39811	bHLH_family.p2	AF011379|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr4_+_64785795_64785812	1.39776	bHLH_family.p2	AF439513|Pappa|18491|pregnancy-associated plasma protein A	AF439514|Pappa|18491|pregnancy-associated plasma protein A
mm9_v1_chr12_-_32635061_32635121	1.39693	bHLH_family.p2	AK028949|Hbp1|73389|high mobility group box transcription factor 1	AK132503|Hbp1|73389|high mobility group box transcription factor 1	AK139211|Hbp1|73389|high mobility group box transcription factor 1	AK142187|Hbp1|73389|high mobility group box transcription factor 1	AK053005|Hbp1|73389|high mobility group box transcription factor 1	AK028674|Hbp1|73389|high mobility group box transcription factor 1	BC026853|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr15_+_88692855_88692877	1.39422	bHLH_family.p2	AY026239|Pim3|223775|proviral integration site 3
mm9_v1_chr16_+_95479164_95479384	1.39349	bHLH_family.p2	AK165436|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	AK165346|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	NM_001039056|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	NM_001039057|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	NM_019664|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	AJ012368|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	BC010794|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15	BC057915|Kcnj15|16516|potassium inwardly-rectifying channel, subfamily J, member 15
mm9_v1_chr6_-_108135548_108135588	1.39331	bHLH_family.p2	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chr7_-_123174560_123174560	1.39292	bHLH_family.p2	AK030713|Sox6|20679|SRY-box containing gene 6	NM_001025560|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr19_-_5731699_5731742	1.39212	bHLH_family.p2	AB012865|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	AK005265|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	BC021593|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	AK012592|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	AK012704|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	AK011957|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	NM_020491|Sssca1|56390|Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)
mm9_v1_chr5_+_138696988_138697037	1.39158	bHLH_family.p2	AK003250|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	AK146994|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene
mm9_v1_chr10_-_127325725_127325818	1.39153	bHLH_family.p2	BC024603|Rdh7|54150|retinol dehydrogenase 7	AF056194|Rdh7|54150|retinol dehydrogenase 7	NM_017473|Rdh7|54150|retinol dehydrogenase 7	NM_001150749|Rdh7|54150|retinol dehydrogenase 7
mm9_v1_chr4_+_139204697_139204813	1.39039	bHLH_family.p2	AK189375|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr12_-_28027541_28027588	1.38813	bHLH_family.p2	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr5_-_137041588_137041697	1.3877	bHLH_family.p2	AB041595|Cux1|13047|cut-like homeobox 1
mm9_v1_chr4_+_116393559_116393581	1.38672	bHLH_family.p2	AK047755|Tesk2|230661|testis-specific kinase 2	NM_146151|Tesk2|230661|testis-specific kinase 2	AK031814|Tesk2|230661|testis-specific kinase 2	AK053368|Tesk2|230661|testis-specific kinase 2	BC029766|Tesk2|230661|testis-specific kinase 2
mm9_v1_chr11_-_101645629_101645660	1.38642	bHLH_family.p2	AK144683|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chrX_-_71481072_71481146	1.38544	bHLH_family.p2	BC039208|Flna|192176|filamin, alpha
mm9_v1_chr11_-_117630476_117630499	1.38515	bHLH_family.p2	AK183838|Tmc6|217353|transmembrane channel-like gene family 6
mm9_v1_chr5_-_108153337_108153362	1.38497	bHLH_family.p2	U58972|Gfi1|14581|growth factor independent 1	NM_010278|Gfi1|14581|growth factor independent 1	U78312|Gfi1|14581|growth factor independent 1
mm9_v1_chr7_+_17401237_17401237	1.38424	bHLH_family.p2	AF414080|Strn4|97387|striatin, calmodulin binding protein 4	NM_001039878|Strn4|97387|striatin, calmodulin binding protein 4	NM_133789|Strn4|97387|striatin, calmodulin binding protein 4
mm9_v1_chr5_+_138696709_138696709	1.38218	bHLH_family.p2	BC144958|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	NM_001081108|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene
mm9_v1_chr11_+_96891242_96891268	1.38102	bHLH_family.p2	NM_146027|Scrn2|217140|secernin 2
mm9_v1_chr2_+_167363696_167363726	1.38059	bHLH_family.p2	AK144478|Snai1|20613|snail homolog 1 (Drosophila)	BC034857|Snai1|20613|snail homolog 1 (Drosophila)	NM_011427|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chrX_-_101866402_101866402	1.38012	bHLH_family.p2	AK132304|Zdhhc15|108672|zinc finger, DHHC domain containing 15	NM_175358|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr10_+_77888414_77888501	1.37981	bHLH_family.p2	NM_007793|Cstb|13014|cystatin B	AK002403|Cstb|13014|cystatin B	BC056170|Cstb|13014|cystatin B	AK151205|Cstb|13014|cystatin B
mm9_v1_chr12_-_99975614_99975748	1.37974	bHLH_family.p2	BC098500|Ptpn21|24000|protein tyrosine phosphatase, non-receptor type 21	NM_001146199|Ptpn21|24000|protein tyrosine phosphatase, non-receptor type 21
mm9_v1_chr11_-_60692261_60692327	1.37966	bHLH_family.p2	BC048514|Tmem11|216821|transmembrane protein 11
mm9_v1_chr5_+_144165615_144165640	1.37856	bHLH_family.p2	CT010232|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chr9_+_46050492_46050601	1.37757	bHLH_family.p2	
mm9_v1_chr2_+_30027012_30027044	1.37598	bHLH_family.p2	AK144459|Endog|13804|endonuclease G	AB012108|Endog|13804|endonuclease G	NM_007931|Endog|13804|endonuclease G	BC030177|Endog|13804|endonuclease G
mm9_v1_chr1_+_180117815_180117840	1.37411	bHLH_family.p2	AK146492|Pppde1|78825|PPPDE peptidase domain containing 1	BC046816|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr3_-_89195913_89195990	1.37323	bHLH_family.p2	AK149976|Zbtb7b|22724|zinc finger and BTB domain containing 7B
mm9_v1_chr10_+_21993165_21993285	1.37225	bHLH_family.p2	NM_001177775|H60b|667281|histocompatibility 60b	FJ594066|Raet1d|56554|retinoic acid early transcript delta
mm9_v1_chr11_-_29415005_29415037	1.37216	bHLH_family.p2	BC033930|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK085965|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK019442|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK077280|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK008574|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	BC115900|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	NM_001163454|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	NM_026465|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1
mm9_v1_chr9_+_119250469_119250588	1.369	bHLH_family.p2	AK143187|Acaa1a|113868|acetyl-Coenzyme A acyltransferase 1A
mm9_v1_chr1_-_179726514_179726745	1.3667	bHLH_family.p2	BC139404|Adss|11566|adenylosuccinate synthetase, non muscle	BC139417|Adss|11566|adenylosuccinate synthetase, non muscle	AK004877|Adss|11566|adenylosuccinate synthetase, non muscle	L24554|Adss|11566|adenylosuccinate synthetase, non muscle	AK010263|Adss|11566|adenylosuccinate synthetase, non muscle	AK148420|Adss|11566|adenylosuccinate synthetase, non muscle	AK170279|Adss|11566|adenylosuccinate synthetase, non muscle	AK043273|Adss|11566|adenylosuccinate synthetase, non muscle	AK028060|Adss|11566|adenylosuccinate synthetase, non muscle	NM_007422|Adss|11566|adenylosuccinate synthetase, non muscle
mm9_v1_chr8_+_82163574_82163602	1.36633	bHLH_family.p2	NM_001081164|Otud4|73945|OTU domain containing 4	BC138373|Otud4|73945|OTU domain containing 4	BC145259|Otud4|73945|OTU domain containing 4
mm9_v1_chr5_+_110681753_110681764	1.36614	bHLH_family.p2	AK134966|Ankle2|71782|ankyrin repeat and LEM domain containing 2
mm9_v1_chr13_+_85329102_85329221	1.36409	bHLH_family.p2	BC038861|Ccnh|66671|cyclin H	AK217691|Ccnh|66671|cyclin H
mm9_v1_chr7_-_149865451_149865614	1.36405	bHLH_family.p2	BC145554|Ins2|16334|insulin II	BC132650|Ins2|16334|insulin II	BC132652|Ins2|16334|insulin II	Z47785|Ins2|16334|insulin II	AY899305|Ins2|16334|insulin II	BC066208|Ins2|16334|insulin II	BC099934|Ins2|16334|insulin II	AK007612|Ins2|16334|insulin II	GQ915612|Ins2|16334|insulin II	NM_001185083|Ins2|16334|insulin II	NM_001185084|Ins2|16334|insulin II	NM_008387|Ins2|16334|insulin II
mm9_v1_chr10_-_79896086_79896137	1.3628	bHLH_family.p2	AF352579|Tcf3|21423|transcription factor 3
mm9_v1_chr5_-_109103771_109103817	1.36115	bHLH_family.p2	BC025824|Slc26a1|231583|solute carrier family 26 (sulfate transporter), member 1	BC031296|Slc26a1|231583|solute carrier family 26 (sulfate transporter), member 1
mm9_v1_chr14_-_63864060_63864107	1.35947	bHLH_family.p2	M98339|Gata4|14463|GATA binding protein 4	U85046|Gata4|14463|GATA binding protein 4	NM_008092|Gata4|14463|GATA binding protein 4	AB075549|Gata4|14463|GATA binding protein 4
mm9_v1_chr6_+_57530968_57531087	1.35692	bHLH_family.p2	NM_025992|Herc6|67138|hect domain and RLD 6	AK149648|Herc6|67138|hect domain and RLD 6	AK147960|Herc6|67138|hect domain and RLD 6	AK011047|Herc6|67138|hect domain and RLD 6
mm9_v1_chr1_+_153191613_153191716	1.35505	bHLH_family.p2	AL355706|Ivns1abp|117198|influenza virus NS1A binding protein	NM_001039511|Ivns1abp|117198|influenza virus NS1A binding protein	NM_001039512|Ivns1abp|117198|influenza virus NS1A binding protein	NM_054102|Ivns1abp|117198|influenza virus NS1A binding protein	AB055737|Ivns1abp|117198|influenza virus NS1A binding protein	AB055738|Ivns1abp|117198|influenza virus NS1A binding protein	AK145071|Ivns1abp|117198|influenza virus NS1A binding protein	AK144835|Ivns1abp|117198|influenza virus NS1A binding protein	AK146001|Ivns1abp|117198|influenza virus NS1A binding protein	AK159254|Ivns1abp|117198|influenza virus NS1A binding protein	BC040250|Ivns1abp|117198|influenza virus NS1A binding protein	AK144619|Ivns1abp|117198|influenza virus NS1A binding protein	AK146494|Ivns1abp|117198|influenza virus NS1A binding protein	AK146645|Ivns1abp|117198|influenza virus NS1A binding protein	DQ914522|Ivns1abp|117198|influenza virus NS1A binding protein	AK007291|Ivns1abp|117198|influenza virus NS1A binding protein	AK145845|Ivns1abp|117198|influenza virus NS1A binding protein	AK129229|Ivns1abp|117198|influenza virus NS1A binding protein	DQ914523|Ivns1abp|117198|influenza virus NS1A binding protein
mm9_v1_chr11_+_96891270_96891328	1.35345	bHLH_family.p2	AK075869|Scrn2|217140|secernin 2	BC021346|Scrn2|217140|secernin 2	BC010784|Scrn2|217140|secernin 2
mm9_v1_chr3_+_89006824_89006905	1.35068	bHLH_family.p2	AK082767|Gba|14466|glucosidase, beta, acid	NM_001077411|Gba|14466|glucosidase, beta, acid	AK201806|Gba|14466|glucosidase, beta, acid	AK166198|Gba|14466|glucosidase, beta, acid	BC006663|Gba|14466|glucosidase, beta, acid	NM_008094|Gba|14466|glucosidase, beta, acid	AK152745|Gba|14466|glucosidase, beta, acid
mm9_v1_chr10_-_127735123_127735139	1.35028	bHLH_family.p2	BC019953|Il23a|83430|interleukin 23, alpha subunit p19	AF301619|Il23a|83430|interleukin 23, alpha subunit p19	NM_031252|Il23a|83430|interleukin 23, alpha subunit p19
mm9_v1_chr3_+_57229331_57229351	1.34998	bHLH_family.p2	NM_145539|Tm4sf4|229302|transmembrane 4 superfamily member 4
mm9_v1_chr9_+_32201569_32201569	1.345	bHLH_family.p2	BC020525|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	NM_001168354|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1
mm9_v1_chr5_-_136220001_136220150	1.34404	bHLH_family.p2	BC046757|Tmem120a|215210|transmembrane protein 120A	AK028119|Tmem120a|215210|transmembrane protein 120A	NM_172541|Tmem120a|215210|transmembrane protein 120A
mm9_v1_chr8_+_109960256_109960322	1.3439	bHLH_family.p2	AK004962|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	AK141281|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	BC048184|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	NM_025830|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	AK146306|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	AK151548|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	BC039921|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2	AK088936|Wwp2|66894|WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr1_-_12980994_12981257	1.3426	bHLH_family.p2	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr18_+_53335981_53336033	1.34228	bHLH_family.p2	AK005470|Snx2|67804|sorting nexin 2	AK002692|Snx2|67804|sorting nexin 2	BC006960|Snx2|67804|sorting nexin 2	NM_026386|Snx2|67804|sorting nexin 2	AK010572|Snx2|67804|sorting nexin 2	AK075929|Snx2|67804|sorting nexin 2	AK153525|Snx2|67804|sorting nexin 2	CT010229|Snx2|67804|sorting nexin 2
mm9_v1_chr8_+_87223501_87223638	1.34123	bHLH_family.p2	
mm9_v1_chr8_+_11556679_11556909	1.34122	bHLH_family.p2	BC147770|Ing1|26356|inhibitor of growth family, member 1	BC147784|Ing1|26356|inhibitor of growth family, member 1	AB221554|Ing1|26356|inhibitor of growth family, member 1	AF149820|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr6_-_134516799_134516866	1.34067	bHLH_family.p2	AF074265|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chr11_-_99418138_99418166	1.34049	bHLH_family.p2	BC117058|Krtap3-2|66708|keratin associated protein 3-2	BC117092|Krtap3-2|66708|keratin associated protein 3-2	AK003615|Krtap3-2|66708|keratin associated protein 3-2	AK014641|Krtap3-2|66708|keratin associated protein 3-2	NM_025720|Krtap3-2|66708|keratin associated protein 3-2
mm9_v1_chr12_+_60232417_60232447	1.33884	bHLH_family.p2	AK157358|Ctage5|217615|CTAGE family, member 5	NM_001165253|Ctage5|217615|CTAGE family, member 5
mm9_v1_chr8_+_86525604_86525604	1.33505	bHLH_family.p2	BC147276|1700067K01Rik|73453|RIKEN cDNA 1700067K01 gene	BC147277|1700067K01Rik|73453|RIKEN cDNA 1700067K01 gene	BC172025|1700067K01Rik|73453|RIKEN cDNA 1700067K01 gene	BC172026|1700067K01Rik|73453|RIKEN cDNA 1700067K01 gene	NM_183097|1700067K01Rik|73453|RIKEN cDNA 1700067K01 gene
mm9_v1_chr3_+_21975544_21975859	1.33277	bHLH_family.p2	AK036064|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	NM_030732|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	AK033347|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1
mm9_v1_chr2_-_32115484_32115630	1.32975	bHLH_family.p2	L31783|Uck1|22245|uridine-cytidine kinase 1	BC025146|Uck1|22245|uridine-cytidine kinase 1	NM_011675|Uck1|22245|uridine-cytidine kinase 1
mm9_v1_chr3_+_135488617_135488753	1.32925	bHLH_family.p2	AK085740|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135149|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135150|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr1_+_140860285_140860402	1.32818	bHLH_family.p2	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr15_+_88650015_88650107	1.32781	bHLH_family.p2	AK017880|Creld2|76737|cysteine-rich with EGF-like domains 2	NM_029720|Creld2|76737|cysteine-rich with EGF-like domains 2	AK165884|Creld2|76737|cysteine-rich with EGF-like domains 2
mm9_v1_chr11_+_120466611_120466690	1.32595	bHLH_family.p2	AK003684|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr17_-_84586604_84586665	1.3256	bHLH_family.p2	AK142565|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	BC006189|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr15_+_78813475_78813522	1.3255	bHLH_family.p2	NM_001024716|Triobp|110253|TRIO and F-actin binding protein	BC053329|Triobp|110253|TRIO and F-actin binding protein	AK085512|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr19_+_3283038_3283071	1.32423	bHLH_family.p2	AK020739|Mrpl21|353242|mitochondrial ribosomal protein L21	NM_172252|Mrpl21|353242|mitochondrial ribosomal protein L21	AK012784|Mrpl21|353242|mitochondrial ribosomal protein L21	AK003285|Mrpl21|353242|mitochondrial ribosomal protein L21	BC028768|Mrpl21|353242|mitochondrial ribosomal protein L21
mm9_v1_chr18_-_35426106_35426253	1.32376	bHLH_family.p2	
mm9_v1_chr15_+_97794629_97794751	1.3232	bHLH_family.p2	AK134684|Tmem106c|380967|transmembrane protein 106C	BC046621|Tmem106c|380967|transmembrane protein 106C	NM_201359|Tmem106c|380967|transmembrane protein 106C
mm9_v1_chr4_+_101091913_101091947	1.3229	bHLH_family.p2	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr5_-_72559220_72559438	1.32277	bHLH_family.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr10_-_127325668_127325688	1.31726	bHLH_family.p2	AB032058|Rdh7|54150|retinol dehydrogenase 7
mm9_v1_chr6_-_145024487_145024530	1.31717	bHLH_family.p2	AK167368|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr7_-_109248742_109248742	1.31717	bHLH_family.p2	AK132854|Art5|11875|ADP-ribosyltransferase 5	NM_007491|Art5|11875|ADP-ribosyltransferase 5
mm9_v1_chr4_-_136604609_136604715	1.31545	bHLH_family.p2	BC059177|Zbtb40|230848|zinc finger and BTB domain containing 40	NM_198248|Zbtb40|230848|zinc finger and BTB domain containing 40	AK036584|Zbtb40|230848|zinc finger and BTB domain containing 40
mm9_v1_chr6_-_100237331_100237351	1.31535	bHLH_family.p2	BC138324|Rybp|56353|RING1 and YY1 binding protein	BC138325|Rybp|56353|RING1 and YY1 binding protein	BC053016|Rybp|56353|RING1 and YY1 binding protein	NM_019743|Rybp|56353|RING1 and YY1 binding protein
mm9_v1_chr4_-_57156490_57156519	1.31394	bHLH_family.p2	AB032366|Epb4.1l4b|54357|erythrocyte protein band 4.1-like 4b
mm9_v1_chr17_+_26012421_26012476	1.31381	bHLH_family.p2	AK151352|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	NM_026686|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	AK170337|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	AK002535|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	BC069266|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene
mm9_v1_chr3_-_10208575_10208582	1.31134	bHLH_family.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr6_+_66846884_66846886	1.31035	bHLH_family.p2	NM_001177558|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK166299|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12
mm9_v1_chr7_+_86198368_86198368	1.30829	bHLH_family.p2	L07049|Acan|11595|aggrecan	NM_007424|Acan|11595|aggrecan
mm9_v1_chr3_+_89006938_89006939	1.30767	bHLH_family.p2	M24119|Gba|14466|glucosidase, beta, acid
mm9_v1_chr7_-_53355395_53355639	1.30708	bHLH_family.p2	D50581|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	U73626|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	BC052731|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	BC057006|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	NM_010602|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11
mm9_v1_chr16_-_78576914_78576958	1.30693	bHLH_family.p2	AK044670|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr7_+_13615892_13615926	1.30598	bHLH_family.p2	AK193916|Trim28|21849|tripartite motif-containing 28	AK194102|Trim28|21849|tripartite motif-containing 28	AK190398|Trim28|21849|tripartite motif-containing 28	AK177374|Trim28|21849|tripartite motif-containing 28	AK189444|Trim28|21849|tripartite motif-containing 28	AK190056|Trim28|21849|tripartite motif-containing 28	AK190280|Trim28|21849|tripartite motif-containing 28	AK192048|Trim28|21849|tripartite motif-containing 28	AK196455|Trim28|21849|tripartite motif-containing 28	AK196856|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr7_+_107641884_107641945	1.30584	bHLH_family.p2	BC012697|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	U69135|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	U94593|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr2_-_168032561_168032640	1.30548	bHLH_family.p2	NM_009628|Adnp|11538|activity-dependent neuroprotective protein	AK129214|Adnp|11538|activity-dependent neuroprotective protein
mm9_v1_chr2_-_90905846_90905881	1.30355	bHLH_family.p2	AK003191|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13
mm9_v1_chr2_-_153067043_153067211	1.30206	bHLH_family.p2	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr8_+_127386922_127387009	1.30181	bHLH_family.p2	NM_010322|Gnpat|14712|glyceronephosphate O-acyltransferase	AK004771|Gnpat|14712|glyceronephosphate O-acyltransferase	AK010896|Gnpat|14712|glyceronephosphate O-acyltransferase	AK004630|Gnpat|14712|glyceronephosphate O-acyltransferase	AK166997|Gnpat|14712|glyceronephosphate O-acyltransferase	AF110769|Gnpat|14712|glyceronephosphate O-acyltransferase	BC003225|Gnpat|14712|glyceronephosphate O-acyltransferase	AK150810|Gnpat|14712|glyceronephosphate O-acyltransferase	BC025972|Gnpat|14712|glyceronephosphate O-acyltransferase
mm9_v1_chr7_+_147323460_147323573	1.29977	bHLH_family.p2	NM_199301|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144625|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144453|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK140018|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	BC027306|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)
mm9_v1_chr14_-_56332217_56332328	1.29892	bHLH_family.p2	AF186373|Tgm1|21816|transglutaminase 1, K polypeptide	NM_001161714|Tgm1|21816|transglutaminase 1, K polypeptide	NM_001161715|Tgm1|21816|transglutaminase 1, K polypeptide
mm9_v1_chr11_-_113570833_113570839	1.29534	bHLH_family.p2	BC016190|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	AK161074|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	NM_001164532|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like	NM_026682|Cpsf4l|52670|cleavage and polyadenylation specific factor 4-like
mm9_v1_chr5_+_136165013_136165105	1.29468	bHLH_family.p2	BC003240|Por|18984|P450 (cytochrome) oxidoreductase	AK131867|Por|18984|P450 (cytochrome) oxidoreductase	BC031463|Por|18984|P450 (cytochrome) oxidoreductase	D17571|Por|18984|P450 (cytochrome) oxidoreductase	NM_008898|Por|18984|P450 (cytochrome) oxidoreductase	AK192112|Por|18984|P450 (cytochrome) oxidoreductase
mm9_v1_chr9_+_102528606_102528660	1.29462	bHLH_family.p2	NM_181394|Anapc13|69010|anaphase promoting complex subunit 13	BC028526|Anapc13|69010|anaphase promoting complex subunit 13
mm9_v1_chr11_+_69468814_69468874	1.29369	bHLH_family.p2	BC119067|Sox15|20670|SRY-box containing gene 15	BC119069|Sox15|20670|SRY-box containing gene 15	AF182945|Sox15|20670|SRY-box containing gene 15	NM_009235|Sox15|20670|SRY-box containing gene 15
mm9_v1_chr4_+_129168433_129168515	1.29228	bHLH_family.p2	NM_001085491|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK018987|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK006760|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK018964|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK018907|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	BC048660|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene
mm9_v1_chr19_-_34821529_34821600	1.28985	bHLH_family.p2	AK028284|Slc16a12|240638|solute carrier family 16 (monocarboxylic acid transporters), member 12	AK029076|Slc16a12|240638|solute carrier family 16 (monocarboxylic acid transporters), member 12	NM_172838|Slc16a12|240638|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm9_v1_chr17_-_26645284_26645349	1.28868	bHLH_family.p2	AK149915|Dusp1|19252|dual specificity phosphatase 1	AK159726|Dusp1|19252|dual specificity phosphatase 1
mm9_v1_chr9_-_108166193_108166275	1.2874	bHLH_family.p2	AK053886|Dag1|13138|dystroglycan 1	AK145048|Dag1|13138|dystroglycan 1	AK036174|Dag1|13138|dystroglycan 1
mm9_v1_chr8_+_46970814_46970842	1.28734	bHLH_family.p2	AF002283|Pdlim3|53318|PDZ and LIM domain 3	NM_016798|Pdlim3|53318|PDZ and LIM domain 3	AK078421|Pdlim3|53318|PDZ and LIM domain 3	AK141331|Pdlim3|53318|PDZ and LIM domain 3	AK164054|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr6_+_17643923_17644228	1.28682	bHLH_family.p2	BC024652|St7|64213|suppression of tumorigenicity 7	AY007792|St7|64213|suppression of tumorigenicity 7	AY007793|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr8_-_72758007_72758039	1.28608	bHLH_family.p2	AK080609|Armc6|76813|armadillo repeat containing 6	AK049351|Armc6|76813|armadillo repeat containing 6
mm9_v1_chr2_+_152987036_152987075	1.28369	bHLH_family.p2	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr7_-_79451480_79451493	1.28343	bHLH_family.p2	BC086658|Mctp2|244049|multiple C2 domains, transmembrane 2	NM_001024703|Mctp2|244049|multiple C2 domains, transmembrane 2	AK156983|Mctp2|244049|multiple C2 domains, transmembrane 2
mm9_v1_chr6_+_136756804_136756827	1.28274	bHLH_family.p2	BC024397|H2afj|232440|H2A histone family, member J
mm9_v1_chr2_+_167328944_167328984	1.28231	bHLH_family.p2	AK163062|Rnf114|81018|ring finger protein 114	BC054416|Rnf114|81018|ring finger protein 114	BC023125|Rnf114|81018|ring finger protein 114	AK139030|Rnf114|81018|ring finger protein 114	AK153452|Rnf114|81018|ring finger protein 114	AK159818|Rnf114|81018|ring finger protein 114	BC043446|Rnf114|81018|ring finger protein 114
mm9_v1_chr4_+_106233632_106233688	1.28182	bHLH_family.p2	AK129036|Dhcr24|74754|24-dehydrocholesterol reductase	NM_053272|Dhcr24|74754|24-dehydrocholesterol reductase	AK083737|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr19_+_45225176_45225204	1.28167	bHLH_family.p2	BC018246|Tlx1|21908|T-cell leukemia, homeobox 1	NM_021901|Tlx1|21908|T-cell leukemia, homeobox 1
mm9_v1_chr4_+_140256449_140256455	1.2809	bHLH_family.p2	AK076046|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr8_+_95376459_95376726	1.28013	bHLH_family.p2	AK193974|Mmp2|17390|matrix metallopeptidase 2	AK197255|Mmp2|17390|matrix metallopeptidase 2	AK200044|Mmp2|17390|matrix metallopeptidase 2	AK184503|Mmp2|17390|matrix metallopeptidase 2
mm9_v1_chr6_+_124654080_124654110	1.27956	bHLH_family.p2	AK194975|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3
mm9_v1_chr15_+_88650115_88650124	1.27859	bHLH_family.p2	BC047370|Creld2|76737|cysteine-rich with EGF-like domains 2
mm9_v1_chr5_+_138696947_138696986	1.27807	bHLH_family.p2	AK003086|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	AK010598|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	AK002488|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene
mm9_v1_chr5_+_120120671_120120725	1.27607	bHLH_family.p2	AK034758|Tbx3|21386|T-box 3	NM_011535|Tbx3|21386|T-box 3	NM_198052|Tbx3|21386|T-box 3	AK031708|Tbx3|21386|T-box 3
mm9_v1_chr15_-_75509153_75509239	1.27558	bHLH_family.p2	BC138582|Top1mt|72960|DNA topoisomerase 1, mitochondrial	BC138583|Top1mt|72960|DNA topoisomerase 1, mitochondrial	BC145336|Top1mt|72960|DNA topoisomerase 1, mitochondrial	AF362952|Top1mt|72960|DNA topoisomerase 1, mitochondrial	NM_028404|Top1mt|72960|DNA topoisomerase 1, mitochondrial	AK147119|Top1mt|72960|DNA topoisomerase 1, mitochondrial
mm9_v1_chr11_+_97524725_97524725	1.27553	bHLH_family.p2	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr4_-_138469861_138469885	1.27508	bHLH_family.p2	NM_028453|Otud3|73162|OTU domain containing 3
mm9_v1_chrX_+_71558358_71558460	1.2745	bHLH_family.p2	AK008402|Fam50a|108160|family with sequence similarity 50, member A	NM_138607|Fam50a|108160|family with sequence similarity 50, member A	Y18505|Fam50a|108160|family with sequence similarity 50, member A	BC125297|Fam50a|108160|family with sequence similarity 50, member A	BC026128|Fam50a|108160|family with sequence similarity 50, member A
mm9_v1_chr1_+_43149417_43149432	1.27423	bHLH_family.p2	AK018453|8430432A02Rik|71524|RIKEN cDNA 8430432A02 gene
mm9_v1_chr5_+_148081701_148081706	1.27277	bHLH_family.p2	AK020261|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103572|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103581|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103582|Pdx1|18609|pancreatic and duodenal homeobox 1	BC105642|Pdx1|18609|pancreatic and duodenal homeobox 1	NM_008814|Pdx1|18609|pancreatic and duodenal homeobox 1
mm9_v1_chr14_+_26661614_26661734	1.27032	bHLH_family.p2	NM_013469|Anxa11|11744|annexin A11	U65986|Anxa11|11744|annexin A11	AK044203|Anxa11|11744|annexin A11	AK140375|Anxa11|11744|annexin A11	AK170850|Anxa11|11744|annexin A11	AK137158|Anxa11|11744|annexin A11	BC012875|Anxa11|11744|annexin A11
mm9_v1_chr10_+_125403274_125403331	1.27016	bHLH_family.p2	AK035166|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	NM_177152|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	AK137007|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	BC065142|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	AY505341|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3
mm9_v1_chr3_-_10197187_10197261	1.26761	bHLH_family.p2	AK161314|Fabp9|21884|fatty acid binding protein 9, testis	AK005745|Fabp9|21884|fatty acid binding protein 9, testis	BC048437|Fabp9|21884|fatty acid binding protein 9, testis	NM_011598|Fabp9|21884|fatty acid binding protein 9, testis
mm9_v1_chr13_-_62959656_62959744	1.26734	bHLH_family.p2	AJ132692|Fbp2|14120|fructose bisphosphatase 2	D42083|Fbp2|14120|fructose bisphosphatase 2	BC012720|Fbp2|14120|fructose bisphosphatase 2	AK166898|Fbp2|14120|fructose bisphosphatase 2	NM_007994|Fbp2|14120|fructose bisphosphatase 2	AK166973|Fbp2|14120|fructose bisphosphatase 2
mm9_v1_chr7_-_31758185_31758231	1.26685	bHLH_family.p2	AK146807|Lsr|54135|lipolysis stimulated lipoprotein receptor	BC004672|Lsr|54135|lipolysis stimulated lipoprotein receptor
mm9_v1_chr5_+_118619772_118619918	1.26231	bHLH_family.p2	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chr14_+_65977510_65977519	1.26051	bHLH_family.p2	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chr10_+_127774845_127774868	1.25984	bHLH_family.p2	AK166814|Cs|12974|citrate synthase	AK012151|Cs|12974|citrate synthase	AK145643|Cs|12974|citrate synthase	AK167125|Cs|12974|citrate synthase	AK163273|Cs|12974|citrate synthase
mm9_v1_chr2_+_152788220_152788276	1.25753	bHLH_family.p2	AK006027|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	NM_001083618|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	NM_029064|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	AK015388|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	AK015740|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	BC130024|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	BC148285|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	AM690753|Ttll9|74711|tubulin tyrosine ligase-like family, member 9
mm9_v1_chr2_-_79969429_79969614	1.25737	bHLH_family.p2	AK050004|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001159582|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK021279|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr7_-_52381569_52381578	1.25703	bHLH_family.p2	BC034450|Rpl13a|22121|ribosomal protein L13A	BC042392|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr7_-_54051038_54051113	1.25605	bHLH_family.p2	AK157182|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	AF534396|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	AF534397|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	AF534399|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	AK141088|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	AK154612|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)
mm9_v1_chr17_-_13102778_13102865	1.25503	bHLH_family.p2	BC158033|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1	BC172002|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1	NM_001034866|Pnldc1|240023|poly(A)-specific ribonuclease (PARN)-like domain containing 1
mm9_v1_chr17_-_21982590_21982733	1.25312	bHLH_family.p2	AK148228|Zfp820|75424|zinc finger protein 820	AK011694|Zfp820|75424|zinc finger protein 820	NM_029281|Zfp820|75424|zinc finger protein 820	BC019219|Zfp820|75424|zinc finger protein 820
mm9_v1_chr15_+_25552273_25552341	1.25251	bHLH_family.p2	AK028552|Myo10|17909|myosin X	AK089482|Myo10|17909|myosin X	NM_019472|Myo10|17909|myosin X
mm9_v1_chr18_+_35278553_35278581	1.25196	bHLH_family.p2	NM_009818|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	X59990|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK148496|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC060174|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC068316|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	D90362|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC048163|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chrX_+_68809103_68809115	1.25049	bHLH_family.p2	AK159119|Hmgb3|15354|high mobility group box 3	AK159322|Hmgb3|15354|high mobility group box 3
mm9_v1_chr16_+_17146981_17147071	1.24886	bHLH_family.p2	AK032396|Ydjc|69101|YdjC homolog (bacterial)	AK140044|Ydjc|69101|YdjC homolog (bacterial)	BC030425|Ydjc|69101|YdjC homolog (bacterial)	AK007503|Ydjc|69101|YdjC homolog (bacterial)	BC115584|Ydjc|69101|YdjC homolog (bacterial)	BC115585|Ydjc|69101|YdjC homolog (bacterial)	NM_026940|Ydjc|69101|YdjC homolog (bacterial)
mm9_v1_chr11_+_40547143_40547199	1.24869	bHLH_family.p2	NM_026023|Nudcd2|52653|NudC domain containing 2	AK133774|Nudcd2|52653|NudC domain containing 2	AK005909|Nudcd2|52653|NudC domain containing 2	AK004388|Nudcd2|52653|NudC domain containing 2
mm9_v1_chr12_-_3426640_3426765	1.24596	bHLH_family.p2	AK035515|1110002L01Rik|100043040|RIKEN cDNA 1110002L01 gene	AK031200|1110002L01Rik|100043040|RIKEN cDNA 1110002L01 gene
mm9_v1_chr3_+_65332306_65332400	1.24522	bHLH_family.p2	AK163347|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	AK162094|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	U55178|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	AK028529|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	NM_178892|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	AK032453|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	AK150248|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase	BC068173|Tiparp|99929|TCDD-inducible poly(ADP-ribose) polymerase
mm9_v1_chr9_+_100544186_100544228	1.24517	bHLH_family.p2	BC069841|Stag1|20842|stromal antigen 1
mm9_v1_chr10_-_23506850_23506973	1.24463	bHLH_family.p2	X15962|Rps12|20042|ribosomal protein S12
mm9_v1_chr18_-_66451420_66451491	1.24453	bHLH_family.p2	AK039742|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC103803|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC152322|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK220435|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK035153|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK028377|Ccbe1|320924|collagen and calcium binding EGF domains 1	NM_178793|Ccbe1|320924|collagen and calcium binding EGF domains 1
mm9_v1_chr8_+_23970006_23970020	1.24402	bHLH_family.p2	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chrX_+_34335642_34335646	1.244	bHLH_family.p2	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chrX_-_101866123_101866164	1.2437	bHLH_family.p2	AK032922|Zdhhc15|108672|zinc finger, DHHC domain containing 15	AK029137|Zdhhc15|108672|zinc finger, DHHC domain containing 15	AK160360|Zdhhc15|108672|zinc finger, DHHC domain containing 15	AK077949|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr9_-_103256690_103256767	1.24346	bHLH_family.p2	BC030486|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC064103|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr10_+_77068939_77069034	1.24331	bHLH_family.p2	AK012742|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150063|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150200|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK162035|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK160169|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK013019|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK148306|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK168988|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	NM_019929|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK167207|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AF063847|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115488|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115489|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)
mm9_v1_chr15_-_51697041_51697058	1.23957	bHLH_family.p2	AK168123|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H
mm9_v1_chr8_-_23272965_23272967	1.23895	bHLH_family.p2	NM_001162947|Nek3|23954|NIMA (never in mitosis gene a)-related expressed kinase 3	AF093416|Nek3|23954|NIMA (never in mitosis gene a)-related expressed kinase 3
mm9_v1_chr15_+_84511408_84511471	1.23746	bHLH_family.p2	NM_146061|Prr5|109270|proline rich 5 (renal)	AF482997|Prr5|109270|proline rich 5 (renal)	AK081231|Prr5|109270|proline rich 5 (renal)
mm9_v1_chr2_+_158157639_158157652	1.23596	bHLH_family.p2	AJ010499|Lbp|16803|lipopolysaccharide binding protein
mm9_v1_chr17_+_71168939_71168940	1.23528	bHLH_family.p2	AK034215|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr19_+_8925257_8925301	1.23459	bHLH_family.p2	AK158268|Lrrn4cl|68852|LRRN4 C-terminal like	AK087615|Lrrn4cl|68852|LRRN4 C-terminal like	NM_001013019|Lrrn4cl|68852|LRRN4 C-terminal like	BC107244|Lrrn4cl|68852|LRRN4 C-terminal like	BC107245|Lrrn4cl|68852|LRRN4 C-terminal like
mm9_v1_chr6_-_91066773_91066797	1.23338	bHLH_family.p2	AK173056|Nup210|54563|nucleoporin 210	AF113751|Nup210|54563|nucleoporin 210	AK077812|Nup210|54563|nucleoporin 210
mm9_v1_chr10_-_77632399_77632581	1.23241	bHLH_family.p2	BC013475|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	AK003866|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	NM_138601|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed
mm9_v1_chr13_-_54789064_54789098	1.23236	bHLH_family.p2	AK161651|Rnf44|105239|ring finger protein 44
mm9_v1_chr2_+_32817189_32817274	1.23233	bHLH_family.p2	AK167761|Rpl12|269261|ribosomal protein L12	NM_009076|Rpl12|269261|ribosomal protein L12	AK002973|Rpl12|269261|ribosomal protein L12	AK008347|Rpl12|269261|ribosomal protein L12	AK012349|Rpl12|269261|ribosomal protein L12	AK088464|Rpl12|269261|ribosomal protein L12	AK144905|Rpl12|269261|ribosomal protein L12	AK151532|Rpl12|269261|ribosomal protein L12	AK151592|Rpl12|269261|ribosomal protein L12	AK168121|Rpl12|269261|ribosomal protein L12	AK012428|Rpl12|269261|ribosomal protein L12	AK150318|Rpl12|269261|ribosomal protein L12	AK148566|Rpl12|269261|ribosomal protein L12	BC018321|Rpl12|269261|ribosomal protein L12	L04280|Rpl12|269261|ribosomal protein L12	BC081469|Rpl12|269261|ribosomal protein L12	BC075731|Rpl12|269261|ribosomal protein L12	BC090393|Rpl12|269261|ribosomal protein L12
mm9_v1_chr5_+_75471625_75471626	1.23179	bHLH_family.p2	NM_133256|Gsx2|14843|GS homeobox 2	S79041|Gsx2|14843|GS homeobox 2	BC119464|Gsx2|14843|GS homeobox 2	BC119465|Gsx2|14843|GS homeobox 2
mm9_v1_chr8_-_73121418_73121547	1.22941	bHLH_family.p2	
mm9_v1_chr5_-_137943329_137943368	1.22806	bHLH_family.p2	AK158620|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm9_v1_chr18_-_35786880_35786902	1.22682	bHLH_family.p2	AK143959|Slc23a1|20522|solute carrier family 23 (nucleobase transporters), member 1	NM_011397|Slc23a1|20522|solute carrier family 23 (nucleobase transporters), member 1
mm9_v1_chr19_+_7131325_7131532	1.22641	bHLH_family.p2	BC008653|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr11_-_101278690_101278747	1.22468	bHLH_family.p2	AK168281|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	AK136332|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	AK078016|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	BC005711|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	NM_144829|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1
mm9_v1_chr4_-_117602074_117602133	1.22263	bHLH_family.p2	AK015393|Artn|11876|artemin	AK145190|Artn|11876|artemin	AK166013|Artn|11876|artemin	AK156507|Artn|11876|artemin
mm9_v1_chr11_+_64814537_64814673	1.21984	bHLH_family.p2	
mm9_v1_chr7_-_134417519_134417566	1.21927	bHLH_family.p2	BC028966|Sephs2|20768|selenophosphate synthetase 2	BC043334|Sephs2|20768|selenophosphate synthetase 2	BC003760|Sephs2|20768|selenophosphate synthetase 2	U43285|Sephs2|20768|selenophosphate synthetase 2	BC016508|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr6_-_122799694_122799778	1.21895	bHLH_family.p2	AK081010|C3ar1|12267|complement component 3a receptor 1
mm9_v1_chr10_-_127838240_127838284	1.21838	bHLH_family.p2	BC028990|Slc39a5|72002|solute carrier family 39 (metal ion transporter), member 5	NM_001136237|Slc39a5|72002|solute carrier family 39 (metal ion transporter), member 5
mm9_v1_chr4_+_140703968_140703990	1.21526	bHLH_family.p2	AK028867|Fbxo42|213499|F-box protein 42
mm9_v1_chr19_+_11986887_11986895	1.21406	bHLH_family.p2	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr15_-_76061807_76061807	1.21358	bHLH_family.p2	AF188013|Plec|18810|plectin	AF188014|Plec|18810|plectin	AY480033|Plec|18810|plectin	NM_001163542|Plec|18810|plectin	NM_011117|Plec|18810|plectin
mm9_v1_chr2_+_156022382_156022502	1.21303	bHLH_family.p2	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr4_+_135315629_135315629	1.21229	bHLH_family.p2	NM_001085509|Myom3|242702|myomesin family, member 3
mm9_v1_chr19_+_22213516_22213606	1.21196	bHLH_family.p2	AK173218|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544532|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544533|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544534|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544535|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544536|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035239|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035240|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035241|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035242|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035243|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr10_+_62487259_62487259	1.2114	bHLH_family.p2	AK014198|Pbld2|67307|phenazine biosynthesis-like protein domain containing 2	NM_026085|Pbld2|67307|phenazine biosynthesis-like protein domain containing 2
mm9_v1_chr5_-_100465086_100465197	1.21114	bHLH_family.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr11_-_87800086_87800086	1.21067	bHLH_family.p2	NM_001168472|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr14_-_32454060_32454136	1.20995	bHLH_family.p2	BC021360|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK161488|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK005505|Hacl1|56794|2-hydroxyacyl-CoA lyase 1
mm9_v1_chr7_-_19944812_19944831	1.20977	bHLH_family.p2	NM_145822|Cd3eap|70333|CD3E antigen, epsilon polypeptide associated protein
mm9_v1_chr9_+_50924105_50924222	1.20926	bHLH_family.p2	AB050983|Btg4|56057|B-cell translocation gene 4	AK136149|Btg4|56057|B-cell translocation gene 4	AK136185|Btg4|56057|B-cell translocation gene 4	NM_019493|Btg4|56057|B-cell translocation gene 4	AK136041|Btg4|56057|B-cell translocation gene 4	AK136124|Btg4|56057|B-cell translocation gene 4	AK162122|Btg4|56057|B-cell translocation gene 4	AK163407|Btg4|56057|B-cell translocation gene 4	BC066811|Btg4|56057|B-cell translocation gene 4	AJ005120|Btg4|56057|B-cell translocation gene 4
mm9_v1_chr5_+_123794508_123794542	1.20724	bHLH_family.p2	AK157720|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK014498|Bcl7a|77045|B-cell CLL/lymphoma 7A	BC017640|Bcl7a|77045|B-cell CLL/lymphoma 7A	BC038481|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr8_+_47556503_47556548	1.20675	bHLH_family.p2	AK149406|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK152772|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK168078|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK004897|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	BC056644|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr6_+_91634056_91634194	1.20585	bHLH_family.p2	NM_009320|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK041141|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	L03292|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK143510|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK162776|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	BC015245|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm9_v1_chr9_-_58049521_58049605	1.20501	bHLH_family.p2	BC096531|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161535|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161537|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161540|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr7_-_133520876_133520891	1.2049	bHLH_family.p2	BC085491|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr5_-_148118681_148118824	1.20426	bHLH_family.p2	AK049574|Cdx2|12591|caudal type homeobox 2	BC103516|Cdx2|12591|caudal type homeobox 2	BC103517|Cdx2|12591|caudal type homeobox 2	BC103519|Cdx2|12591|caudal type homeobox 2	BC103520|Cdx2|12591|caudal type homeobox 2	AK049566|Cdx2|12591|caudal type homeobox 2	NM_007673|Cdx2|12591|caudal type homeobox 2
mm9_v1_chr9_-_66891535_66891699	1.2038	bHLH_family.p2	NM_001164252|Tpm1|22003|tropomyosin 1, alpha	NM_001164253|Tpm1|22003|tropomyosin 1, alpha	NM_001164254|Tpm1|22003|tropomyosin 1, alpha	NM_001164256|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr5_-_110715166_110715186	1.20206	bHLH_family.p2	NM_008993|Pxmp2|19301|peroxisomal membrane protein 2
mm9_v1_chr18_+_61847568_61847591	1.20202	bHLH_family.p2	AK003506|Il17b|56069|interleukin 17B	AF184970|Il17b|56069|interleukin 17B	AF218726|Il17b|56069|interleukin 17B	BC002271|Il17b|56069|interleukin 17B	NM_019508|Il17b|56069|interleukin 17B	AF250308|Il17b|56069|interleukin 17B
mm9_v1_chr8_-_124984513_124984632	1.19913	bHLH_family.p2	AF133714|Snai3|30927|snail homolog 3 (Drosophila)	AF195655|Snai3|30927|snail homolog 3 (Drosophila)	BC100724|Snai3|30927|snail homolog 3 (Drosophila)	BC100726|Snai3|30927|snail homolog 3 (Drosophila)	BC100727|Snai3|30927|snail homolog 3 (Drosophila)	AK089285|Snai3|30927|snail homolog 3 (Drosophila)	AK042234|Snai3|30927|snail homolog 3 (Drosophila)	NM_013914|Snai3|30927|snail homolog 3 (Drosophila)	AK153633|Snai3|30927|snail homolog 3 (Drosophila)
mm9_v1_chr13_+_120217665_120217771	1.19818	bHLH_family.p2	NM_145457|Paip1|218693|polyadenylate binding protein-interacting protein 1	BC019726|Paip1|218693|polyadenylate binding protein-interacting protein 1	BC051042|Paip1|218693|polyadenylate binding protein-interacting protein 1
mm9_v1_chr9_+_119250591_119250600	1.19795	bHLH_family.p2	BC012400|Acaa1a|113868|acetyl-Coenzyme A acyltransferase 1A
mm9_v1_chr11_-_57982024_57982049	1.19718	bHLH_family.p2	NM_001166669|Gemin5|216766|gem (nuclear organelle) associated protein 5	NM_001166670|Gemin5|216766|gem (nuclear organelle) associated protein 5	NM_001166671|Gemin5|216766|gem (nuclear organelle) associated protein 5	NM_172558|Gemin5|216766|gem (nuclear organelle) associated protein 5
mm9_v1_chr15_+_73555186_73555261	1.19617	bHLH_family.p2	AK004562|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr5_+_138070341_138070466	1.1957	bHLH_family.p2	NM_001168652|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	NM_146164|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK088331|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK158025|Lrch4-sap25|100316903|Lrch4-Sap25 gene	BC012525|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4
mm9_v1_chr10_-_128026556_128026720	1.19408	bHLH_family.p2	AY686636|Erbb3|13867|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	NM_010153|Erbb3|13867|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	BC106091|Erbb3|13867|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)
mm9_v1_chr11_+_93747419_93747532	1.19387	bHLH_family.p2	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr2_+_28695925_28695978	1.19296	bHLH_family.p2	NM_001033294|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	AK030888|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm9_v1_chr8_-_97125464_97125573	1.19064	bHLH_family.p2	BC023158|Fam192a|102122|family with sequence similarity 192, member A	AK033988|Fam192a|102122|family with sequence similarity 192, member A	AK050704|Fam192a|102122|family with sequence similarity 192, member A
mm9_v1_chr8_-_41372306_41372306	1.1906	bHLH_family.p2	AK052233|Fgf20|80857|fibroblast growth factor 20	NM_030610|Fgf20|80857|fibroblast growth factor 20
mm9_v1_chr17_-_56249206_56249228	1.19035	bHLH_family.p2	NM_020568|Plin4|57435|perilipin 4	AF064748|Plin4|57435|perilipin 4
mm9_v1_chr14_-_50145396_50145539	1.19026	bHLH_family.p2	BC138981|Slc35f4|75288|solute carrier family 35, member F4	BC145720|Slc35f4|75288|solute carrier family 35, member F4	AK047949|Slc35f4|75288|solute carrier family 35, member F4	AK034308|Slc35f4|75288|solute carrier family 35, member F4	NM_029238|Slc35f4|75288|solute carrier family 35, member F4	AK043617|Slc35f4|75288|solute carrier family 35, member F4	AB041538|Slc35f4|75288|solute carrier family 35, member F4
mm9_v1_chr7_-_134417567_134417570	1.18923	bHLH_family.p2	AK149516|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr14_+_14845004_14845173	1.18769	bHLH_family.p2	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr9_+_53619341_53619344	1.18729	bHLH_family.p2	NM_028060|Slc35f2|72022|solute carrier family 35, member F2	BC055843|Slc35f2|72022|solute carrier family 35, member F2
mm9_v1_chrX_-_69520059_69520141	1.18655	bHLH_family.p2	AF189263|Gabre|14404|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon	NM_017369|Gabre|14404|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon	AK079258|Gabre|14404|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
mm9_v1_chr9_+_108417075_108417146	1.18419	bHLH_family.p2	BC018274|Qars|97541|glutaminyl-tRNA synthetase	AK189247|Qars|97541|glutaminyl-tRNA synthetase
mm9_v1_chr5_+_114581164_114581232	1.18397	bHLH_family.p2	NM_011677|Ung|22256|uracil DNA glycosylase	X99018|Ung|22256|uracil DNA glycosylase	U55041|Ung|22256|uracil DNA glycosylase	AK168709|Ung|22256|uracil DNA glycosylase	AK168785|Ung|22256|uracil DNA glycosylase	BC052853|Ung|22256|uracil DNA glycosylase
mm9_v1_chrX_+_68809092_68809096	1.1821	bHLH_family.p2	AK141399|Hmgb3|15354|high mobility group box 3	AK146795|Hmgb3|15354|high mobility group box 3
mm9_v1_chr2_+_3201446_3201559	1.18158	bHLH_family.p2	AK161490|Nmt2|18108|N-myristoyltransferase 2	AK168171|Nmt2|18108|N-myristoyltransferase 2	AK168190|Nmt2|18108|N-myristoyltransferase 2	AK134521|Nmt2|18108|N-myristoyltransferase 2	AK044213|Nmt2|18108|N-myristoyltransferase 2	AF043327|Nmt2|18108|N-myristoyltransferase 2	BC037647|Nmt2|18108|N-myristoyltransferase 2	NM_008708|Nmt2|18108|N-myristoyltransferase 2
mm9_v1_chr7_-_29692382_29692403	1.18132	bHLH_family.p2	AK030237|Actn4|60595|actinin alpha 4
mm9_v1_chr11_-_49488485_49488495	1.18062	bHLH_family.p2	AK039164|Cnot6|104625|CCR4-NOT transcription complex, subunit 6	AK169707|Cnot6|104625|CCR4-NOT transcription complex, subunit 6
mm9_v1_chr8_+_125091889_125091914	1.1793	bHLH_family.p2	AF477481|Cdt1|67177|chromatin licensing and DNA replication factor 1	BC048076|Cdt1|67177|chromatin licensing and DNA replication factor 1	NM_026014|Cdt1|67177|chromatin licensing and DNA replication factor 1
mm9_v1_chr2_-_13192850_13192974	1.17754	bHLH_family.p2	X63039|Rsu1|20163|Ras suppressor protein 1	BC003827|Rsu1|20163|Ras suppressor protein 1	NM_009105|Rsu1|20163|Ras suppressor protein 1	AK150011|Rsu1|20163|Ras suppressor protein 1	AK149835|Rsu1|20163|Ras suppressor protein 1	AK152655|Rsu1|20163|Ras suppressor protein 1	AK009288|Rsu1|20163|Ras suppressor protein 1	AK011857|Rsu1|20163|Ras suppressor protein 1	AK135491|Rsu1|20163|Ras suppressor protein 1	AK169076|Rsu1|20163|Ras suppressor protein 1
mm9_v1_chr14_+_69789858_69790075	1.1775	bHLH_family.p2	AF045150|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	BC132558|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	BC139035|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	AK006401|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	BC100425|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	AF030113|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	AK007304|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	NM_010920|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)
mm9_v1_chr15_-_76031023_76031036	1.17561	bHLH_family.p2	AF188015|Plec|18810|plectin	AF188016|Plec|18810|plectin	AY480039|Plec|18810|plectin	NM_201390|Plec|18810|plectin
mm9_v1_chr8_+_109034784_109034845	1.17353	bHLH_family.p2	AK045041|Cdh3|12560|cadherin 3	AK164577|Cdh3|12560|cadherin 3	NM_007665|Cdh3|12560|cadherin 3	AK031265|Cdh3|12560|cadherin 3	NM_001037809|Cdh3|12560|cadherin 3	X06340|Cdh3|12560|cadherin 3	BC098459|Cdh3|12560|cadherin 3
mm9_v1_chr7_-_123586952_123586976	1.17336	bHLH_family.p2	AK163446|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK049609|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	U52193|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK019194|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK140908|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	NM_011083|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
mm9_v1_chr11_-_5849601_5849601	1.17256	bHLH_family.p2	L38990|Gck|103988|glucokinase	NM_010292|Gck|103988|glucokinase
mm9_v1_chr4_-_43536296_43536373	1.17174	bHLH_family.p2	X58381|Tpm2|22004|tropomyosin 2, beta	BC014809|Tpm2|22004|tropomyosin 2, beta	M87635|Tpm2|22004|tropomyosin 2, beta	X12650|Tpm2|22004|tropomyosin 2, beta	BC024358|Tpm2|22004|tropomyosin 2, beta	AK003186|Tpm2|22004|tropomyosin 2, beta	AK132162|Tpm2|22004|tropomyosin 2, beta
mm9_v1_chr11_+_3549496_3549496	1.17134	bHLH_family.p2	AK173042|Morc2a|74522|microrchidia 2A	NM_001159288|Morc2a|74522|microrchidia 2A
mm9_v1_chr15_+_88692885_88692944	1.17051	bHLH_family.p2	AK079623|Pim3|223775|proviral integration site 3	AK149478|Pim3|223775|proviral integration site 3	AK159399|Pim3|223775|proviral integration site 3	AK159600|Pim3|223775|proviral integration site 3	AK159670|Pim3|223775|proviral integration site 3	BC026639|Pim3|223775|proviral integration site 3
mm9_v1_chr8_+_121918768_121918845	1.16872	bHLH_family.p2	BC004764|Mlycd|56690|malonyl-CoA decarboxylase	NM_019966|Mlycd|56690|malonyl-CoA decarboxylase	AK171095|Mlycd|56690|malonyl-CoA decarboxylase	AK082479|Mlycd|56690|malonyl-CoA decarboxylase	AK051564|Mlycd|56690|malonyl-CoA decarboxylase
mm9_v1_chr16_-_95218980_95219037	1.16564	bHLH_family.p2	D86040|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK081109|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr18_-_35786790_35786820	1.16533	bHLH_family.p2	AF058318|Slc23a1|20522|solute carrier family 23 (nucleobase transporters), member 1	AK085499|Slc23a1|20522|solute carrier family 23 (nucleobase transporters), member 1	BC013528|Slc23a1|20522|solute carrier family 23 (nucleobase transporters), member 1	AK165439|Slc23a1|20522|solute carrier family 23 (nucleobase transporters), member 1
mm9_v1_chr7_+_86058817_86058936	1.16459	bHLH_family.p2	AK005528|Isg20|57444|interferon-stimulated protein
mm9_v1_chr2_-_119980243_119980354	1.16346	bHLH_family.p2	BC012272|Ehd4|98878|EH-domain containing 4	AK149760|Ehd4|98878|EH-domain containing 4	AK163835|Ehd4|98878|EH-domain containing 4	AK147186|Ehd4|98878|EH-domain containing 4	AK159235|Ehd4|98878|EH-domain containing 4	AK159597|Ehd4|98878|EH-domain containing 4	NM_133838|Ehd4|98878|EH-domain containing 4	AK166101|Ehd4|98878|EH-domain containing 4	AK169343|Ehd4|98878|EH-domain containing 4
mm9_v1_chr15_+_12134833_12134872	1.16223	bHLH_family.p2	AK076161|Mtmr12|268783|myotubularin related protein 12	BC054352|Mtmr12|268783|myotubularin related protein 12	NM_172958|Mtmr12|268783|myotubularin related protein 12	AK050099|Mtmr12|268783|myotubularin related protein 12	AK050236|Mtmr12|268783|myotubularin related protein 12	BC042573|Mtmr12|268783|myotubularin related protein 12
mm9_v1_chr11_+_70514004_70514162	1.16161	bHLH_family.p2	AK029250|Kif1c|16562|kinesin family member 1C	NM_153103|Kif1c|16562|kinesin family member 1C	BC029286|Kif1c|16562|kinesin family member 1C	AK173007|Kif1c|16562|kinesin family member 1C
mm9_v1_chr4_+_42339258_42339259	1.16137	bHLH_family.p2	NM_001100596|Gm2002|100038993|predicted gene 2002	NM_010550|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	U69491|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	X98519|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	NM_001099348|Gm13305|100042555|predicted gene 13305
mm9_v1_chr2_+_84680479_84680580	1.1611	bHLH_family.p2	NM_024497|Slc43a1|72401|solute carrier family 43, member 1	BC053747|Slc43a1|72401|solute carrier family 43, member 1
mm9_v1_chr7_+_20094042_20094114	1.16085	bHLH_family.p2	BC106114|Trappc6a|67091|trafficking protein particle complex 6A	NM_025960|Trappc6a|67091|trafficking protein particle complex 6A	AK007965|Trappc6a|67091|trafficking protein particle complex 6A	AK008022|Trappc6a|67091|trafficking protein particle complex 6A	AK008462|Trappc6a|67091|trafficking protein particle complex 6A	AK088832|Trappc6a|67091|trafficking protein particle complex 6A	BC020128|Trappc6a|67091|trafficking protein particle complex 6A	AK015839|Trappc6a|67091|trafficking protein particle complex 6A
mm9_v1_chr10_-_80753957_80754016	1.15949	bHLH_family.p2	AK029083|Tjp3|27375|tight junction protein 3	BC012518|Tjp3|27375|tight junction protein 3	AF157006|Tjp3|27375|tight junction protein 3	AK134100|Tjp3|27375|tight junction protein 3	NM_013769|Tjp3|27375|tight junction protein 3
mm9_v1_chr1_+_89223558_89223642	1.15864	bHLH_family.p2	NM_146112|Gigyf2|227331|GRB10 interacting GYF protein 2	AK079246|Gigyf2|227331|GRB10 interacting GYF protein 2	NM_001110212|Gigyf2|227331|GRB10 interacting GYF protein 2	AK011414|Gigyf2|227331|GRB10 interacting GYF protein 2	AK034426|Gigyf2|227331|GRB10 interacting GYF protein 2	AK160878|Gigyf2|227331|GRB10 interacting GYF protein 2	AK144058|Gigyf2|227331|GRB10 interacting GYF protein 2	BC089036|Gigyf2|227331|GRB10 interacting GYF protein 2	BC006835|Gigyf2|227331|GRB10 interacting GYF protein 2	BC076610|Gigyf2|227331|GRB10 interacting GYF protein 2	AY176043|Gigyf2|227331|GRB10 interacting GYF protein 2	AK137375|Gigyf2|227331|GRB10 interacting GYF protein 2
mm9_v1_chr3_-_89716963_89717124	1.15818	bHLH_family.p2	X51976|Il6ra|16194|interleukin 6 receptor, alpha	X51975|Il6ra|16194|interleukin 6 receptor, alpha	BC019388|Il6ra|16194|interleukin 6 receptor, alpha	X53802|Il6ra|16194|interleukin 6 receptor, alpha	AK046337|Il6ra|16194|interleukin 6 receptor, alpha	AK082270|Il6ra|16194|interleukin 6 receptor, alpha	NM_010559|Il6ra|16194|interleukin 6 receptor, alpha	AK141197|Il6ra|16194|interleukin 6 receptor, alpha
mm9_v1_chr2_+_148498350_148498409	1.15759	bHLH_family.p2	NM_019761|Nxt1|56488|NTF2-related export protein 1	NM_001110159|Nxt1|56488|NTF2-related export protein 1	AK003254|Nxt1|56488|NTF2-related export protein 1	BC023672|Nxt1|56488|NTF2-related export protein 1	AK168314|Nxt1|56488|NTF2-related export protein 1	AF156958|Nxt1|56488|NTF2-related export protein 1
mm9_v1_chr10_+_52111413_52111541	1.15724	bHLH_family.p2	AK017780|Nepn|66650|nephrocan	AY938536|Nepn|66650|nephrocan	NM_025684|Nepn|66650|nephrocan	AK017656|Nepn|66650|nephrocan	BC132046|Nepn|66650|nephrocan	BC132048|Nepn|66650|nephrocan	AK017842|Nepn|66650|nephrocan
mm9_v1_chr15_+_76175584_76175587	1.15701	bHLH_family.p2	AK177843|Cyc1|66445|cytochrome c-1	AK187999|Cyc1|66445|cytochrome c-1
mm9_v1_chr11_-_60590796_60590866	1.15664	bHLH_family.p2	AB006074|Top3a|21975|topoisomerase (DNA) III alpha	NM_009410|Top3a|21975|topoisomerase (DNA) III alpha
mm9_v1_chr8_+_123059756_123059756	1.15648	bHLH_family.p2	AK033263|Gse1|382034|genetic suppressor element 1	NM_001145897|Gse1|382034|genetic suppressor element 1
mm9_v1_chrX_+_7848517_7848554	1.15405	bHLH_family.p2	NM_172479|Slc38a5|209837|solute carrier family 38, member 5	AK054485|Slc38a5|209837|solute carrier family 38, member 5	AK077667|Slc38a5|209837|solute carrier family 38, member 5	BC152401|Slc38a5|209837|solute carrier family 38, member 5	AK155928|Slc38a5|209837|solute carrier family 38, member 5
mm9_v1_chr17_-_32557807_32557904	1.154	bHLH_family.p2	EF204951|Pglyrp2|57757|peptidoglycan recognition protein 2	AY282722|Pglyrp2|57757|peptidoglycan recognition protein 2	BC019396|Pglyrp2|57757|peptidoglycan recognition protein 2
mm9_v1_chr1_-_174563092_174563154	1.1529	bHLH_family.p2	AB183013|Dusp23|68440|dual specificity phosphatase 23	BC069187|Dusp23|68440|dual specificity phosphatase 23	NM_026725|Dusp23|68440|dual specificity phosphatase 23
mm9_v1_chr4_+_43519895_43519908	1.15144	bHLH_family.p2	AB086322|Car9|230099|carbonic anhydrase 9	AJ245857|Car9|230099|carbonic anhydrase 9	EF122497|Car9|230099|carbonic anhydrase 9	AK136579|Car9|230099|carbonic anhydrase 9	AK137719|Car9|230099|carbonic anhydrase 9	NM_139305|Car9|230099|carbonic anhydrase 9	BC120544|Car9|230099|carbonic anhydrase 9	BC120546|Car9|230099|carbonic anhydrase 9	BC057148|Car9|230099|carbonic anhydrase 9
mm9_v1_chr5_-_23948000_23948115	1.14986	bHLH_family.p2	
mm9_v1_chr8_-_108660736_108660873	1.14936	bHLH_family.p2	AK088755|Esrp2|77411|epithelial splicing regulatory protein 2	BC031444|Esrp2|77411|epithelial splicing regulatory protein 2	NM_176838|Esrp2|77411|epithelial splicing regulatory protein 2
mm9_v1_chr6_+_52263491_52263491	1.14834	bHLH_family.p2	NM_007966|Evx1|14028|even skipped homeotic gene 1 homolog	X54239|Evx1|14028|even skipped homeotic gene 1 homolog
mm9_v1_chr10_-_39679957_39679963	1.14742	bHLH_family.p2	AK144527|G630090E17Rik|100041085|RIKEN cDNA G630090E17 gene	NM_001173500|G630090E17Rik|100041085|RIKEN cDNA G630090E17 gene
mm9_v1_chr4_+_101091875_101091893	1.14531	bHLH_family.p2	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr9_-_107996781_107996821	1.14494	bHLH_family.p2	BC025494|Apeh|235606|acylpeptide hydrolase	BC005716|Apeh|235606|acylpeptide hydrolase	AK041271|Apeh|235606|acylpeptide hydrolase	AK149671|Apeh|235606|acylpeptide hydrolase	AK149713|Apeh|235606|acylpeptide hydrolase	NM_146226|Apeh|235606|acylpeptide hydrolase
mm9_v1_chr5_-_111082269_111082383	1.14458	bHLH_family.p2	AK184847|Noc4l|100608|nucleolar complex associated 4 homolog (S. cerevisiae)	AK172310|Noc4l|100608|nucleolar complex associated 4 homolog (S. cerevisiae)
mm9_v1_chr10_+_5958432_5958574	1.14311	bHLH_family.p2	AK132308|Zbtb2|381990|zinc finger and BTB domain containing 2	NM_001033466|Zbtb2|381990|zinc finger and BTB domain containing 2
mm9_v1_chr1_-_75313930_75314211	1.1428	bHLH_family.p2	AK160084|Dnpep|13437|aspartyl aminopeptidase	AK038646|Dnpep|13437|aspartyl aminopeptidase	NM_001110831|Dnpep|13437|aspartyl aminopeptidase
mm9_v1_chr5_+_135462204_135462439	1.1421	bHLH_family.p2	AF095905|Cldn3|12739|claudin 3	BC012650|Cldn3|12739|claudin 3	AF087821|Cldn3|12739|claudin 3	BC023269|Cldn3|12739|claudin 3	AK165808|Cldn3|12739|claudin 3
mm9_v1_chr1_-_30930538_30930588	1.14166	bHLH_family.p2	AK045780|Phf3|213109|PHD finger protein 3
mm9_v1_chr9_-_37464614_37464896	1.14157	bHLH_family.p2	AK185995|Tbrg1|21376|transforming growth factor beta regulated gene 1	DQ144541|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK131638|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151075|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151209|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC054057|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC037145|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151457|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC040813|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC065795|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC043022|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK166547|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK011268|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK150549|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK003270|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK011614|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK010925|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC021331|Tbrg1|21376|transforming growth factor beta regulated gene 1	NM_025289|Tbrg1|21376|transforming growth factor beta regulated gene 1
mm9_v1_chr9_+_65308712_65308803	1.13964	bHLH_family.p2	AK150215|Spg21|27965|spastic paraplegia 21 homolog (human)	NM_138584|Spg21|27965|spastic paraplegia 21 homolog (human)	AK009332|Spg21|27965|spastic paraplegia 21 homolog (human)	AK170666|Spg21|27965|spastic paraplegia 21 homolog (human)	AK090017|Spg21|27965|spastic paraplegia 21 homolog (human)	AK150581|Spg21|27965|spastic paraplegia 21 homolog (human)	BC132377|Spg21|27965|spastic paraplegia 21 homolog (human)	BC132403|Spg21|27965|spastic paraplegia 21 homolog (human)	AK149930|Spg21|27965|spastic paraplegia 21 homolog (human)	AK011985|Spg21|27965|spastic paraplegia 21 homolog (human)	AK153284|Spg21|27965|spastic paraplegia 21 homolog (human)
mm9_v1_chr7_+_87343467_87343473	1.13934	bHLH_family.p2	AK154969|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr8_-_11312729_11312825	1.13853	bHLH_family.p2	J04694|Col4a1|12826|collagen, type IV, alpha 1	AK142097|Col4a1|12826|collagen, type IV, alpha 1	J03758|Col4a1|12826|collagen, type IV, alpha 1	AK147284|Col4a1|12826|collagen, type IV, alpha 1	AK147355|Col4a1|12826|collagen, type IV, alpha 1	X06777|Col4a1|12826|collagen, type IV, alpha 1	AK146487|Col4a1|12826|collagen, type IV, alpha 1	AK159130|Col4a1|12826|collagen, type IV, alpha 1	AK147661|Col4a1|12826|collagen, type IV, alpha 1	NM_009931|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr8_+_55686133_55686133	1.13803	bHLH_family.p2	AF395083|Spata4|69281|spermatogenesis associated 4	AF530515|Spata4|69281|spermatogenesis associated 4	AK005612|Spata4|69281|spermatogenesis associated 4	BC048650|Spata4|69281|spermatogenesis associated 4	NM_133711|Spata4|69281|spermatogenesis associated 4
mm9_v1_chr1_-_121401172_121401233	1.13782	bHLH_family.p2	AK205791|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	BC006907|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AK017698|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AK033193|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AK172364|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)
mm9_v1_chr13_+_91062722_91062758	1.1361	bHLH_family.p2	NM_024175|Rps23|66475|ribosomal protein S23	AK166994|Rps23|66475|ribosomal protein S23	AK010667|Rps23|66475|ribosomal protein S23
mm9_v1_chr11_-_100565382_100565591	1.13605	bHLH_family.p2	AF316999|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	BC029209|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK153342|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK021012|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	NM_030150|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58
mm9_v1_chr10_-_102491392_102491410	1.13499	bHLH_family.p2	BC052200|Alx1|216285|ALX homeobox 1	AK047846|Alx1|216285|ALX homeobox 1	NM_172553|Alx1|216285|ALX homeobox 1
mm9_v1_chr2_+_31526229_31526258	1.13216	bHLH_family.p2	BC021807|Exosc2|227715|exosome component 2	AK164618|Exosc2|227715|exosome component 2	AK166881|Exosc2|227715|exosome component 2	AK144234|Exosc2|227715|exosome component 2	BC021485|Exosc2|227715|exosome component 2	NM_144886|Exosc2|227715|exosome component 2
mm9_v1_chr2_-_62321694_62321709	1.13161	bHLH_family.p2	BC012975|Gcg|14526|glucagon	AK007911|Gcg|14526|glucagon	AK148544|Gcg|14526|glucagon	AF276754|Gcg|14526|glucagon	NM_008100|Gcg|14526|glucagon
mm9_v1_chr3_+_94778716_94778752	1.13133	bHLH_family.p2	BC138457|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	BC138458|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	BC113781|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm9_v1_chr18_+_35021288_35021413	1.13106	bHLH_family.p2	M19643|Egr1|13653|early growth response 1	AK133630|Egr1|13653|early growth response 1
mm9_v1_chr12_+_111976121_111976196	1.12944	bHLH_family.p2	NM_027149|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr11_+_16652205_16652516	1.12836	bHLH_family.p2	AK004883|Egfr|13649|epidermal growth factor receptor	NM_007912|Egfr|13649|epidermal growth factor receptor	NM_207655|Egfr|13649|epidermal growth factor receptor	AK004944|Egfr|13649|epidermal growth factor receptor	AK004911|Egfr|13649|epidermal growth factor receptor	AK134262|Egfr|13649|epidermal growth factor receptor	AK014017|Egfr|13649|epidermal growth factor receptor	BC023729|Egfr|13649|epidermal growth factor receptor	AF124513|Egfr|13649|epidermal growth factor receptor	AF275367|Egfr|13649|epidermal growth factor receptor	X59698|Egfr|13649|epidermal growth factor receptor	AK049452|Egfr|13649|epidermal growth factor receptor	X78987|Egfr|13649|epidermal growth factor receptor	U03425|Egfr|13649|epidermal growth factor receptor	L06864|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr8_+_46970860_46970893	1.12732	bHLH_family.p2	AK016447|Pdlim3|53318|PDZ and LIM domain 3	BC070418|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr10_-_12912880_12912990	1.12727	bHLH_family.p2	AK011491|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC069962|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC067062|Ltv1|353258|LTV1 homolog (S. cerevisiae)	NM_181470|Ltv1|353258|LTV1 homolog (S. cerevisiae)
mm9_v1_chr11_+_69906145_69906162	1.12617	bHLH_family.p2	BC011197|Asgr2|11890|asialoglycoprotein receptor 2	NM_007493|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr3_-_105746740_105746751	1.12461	bHLH_family.p2	AK215505|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr10_+_127774872_127774973	1.12446	bHLH_family.p2	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr4_+_15211137_15211173	1.12433	bHLH_family.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr19_-_10678747_10678824	1.12433	bHLH_family.p2	BC021917|Dak|225913|dihydroxyacetone kinase 2 homolog (yeast)	NM_145496|Dak|225913|dihydroxyacetone kinase 2 homolog (yeast)
mm9_v1_chr4_+_48598013_48598089	1.12166	bHLH_family.p2	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr15_+_78860623_78860757	1.12001	bHLH_family.p2	
mm9_v1_chr14_+_27852148_27852279	1.1196	bHLH_family.p2	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr18_+_31919533_31919621	1.11795	bHLH_family.p2	BC056948|Ammecr1l|225339|AMME chromosomal region gene 1-like	NM_153515|Ammecr1l|225339|AMME chromosomal region gene 1-like	AK151257|Ammecr1l|225339|AMME chromosomal region gene 1-like
mm9_v1_chr9_+_90057741_90057815	1.11711	bHLH_family.p2	NM_001003911|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm9_v1_chr11_-_31269867_31269907	1.11691	bHLH_family.p2	AK002527|Stc2|20856|stanniocalcin 2	AK010318|Stc2|20856|stanniocalcin 2	BC012206|Stc2|20856|stanniocalcin 2	AF056244|Stc2|20856|stanniocalcin 2
mm9_v1_chr8_+_112392441_112392545	1.11657	bHLH_family.p2	AK165088|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048472|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117961|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	NM_001122594|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117962|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048260|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr17_+_24806616_24806711	1.11506	bHLH_family.p2	AK131127|Zfp598|213753|zinc finger protein 598	BC050859|Zfp598|213753|zinc finger protein 598	NM_183149|Zfp598|213753|zinc finger protein 598
mm9_v1_chr10_+_43988192_43988362	1.11363	bHLH_family.p2	BC002166|Atg5|11793|autophagy-related 5 (yeast)
mm9_v1_chr3_-_130412297_130412356	1.11207	bHLH_family.p2	AK011085|Ostc|66357|oligosaccharyltransferase complex subunit	AK017845|Ostc|66357|oligosaccharyltransferase complex subunit	AK135332|Ostc|66357|oligosaccharyltransferase complex subunit	AK013011|Ostc|66357|oligosaccharyltransferase complex subunit	AK032969|Ostc|66357|oligosaccharyltransferase complex subunit	AK009237|Ostc|66357|oligosaccharyltransferase complex subunit	BC014799|Ostc|66357|oligosaccharyltransferase complex subunit	BC021935|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chr14_-_70842930_70842958	1.11185	bHLH_family.p2	AK013165|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr1_-_183142055_183142112	1.11138	bHLH_family.p2	AK082326|Wdr26|226757|WD repeat domain 26	NM_145514|Wdr26|226757|WD repeat domain 26
mm9_v1_chr11_-_120434075_120434180	1.11035	bHLH_family.p2	BC093512|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK168336|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK150755|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	BC008549|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK151351|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide
mm9_v1_chr19_+_5038825_5038950	1.11029	bHLH_family.p2	AK158899|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	NM_175383|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK050347|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	BC069927|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK083857|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm9_v1_chr10_+_79479416_79479491	1.10893	bHLH_family.p2	AK159194|Hmha1|70719|histocompatibility (minor) HA-1	NM_001142701|Hmha1|70719|histocompatibility (minor) HA-1	AK170262|Hmha1|70719|histocompatibility (minor) HA-1	AK171304|Hmha1|70719|histocompatibility (minor) HA-1	AK159474|Hmha1|70719|histocompatibility (minor) HA-1
mm9_v1_chr10_+_43988135_43988181	1.10774	bHLH_family.p2	AK028315|Atg5|11793|autophagy-related 5 (yeast)	NM_053069|Atg5|11793|autophagy-related 5 (yeast)
mm9_v1_chr10_+_82323249_82323266	1.10661	bHLH_family.p2	AK172383|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr10_-_93352485_93352578	1.10641	bHLH_family.p2	BC092052|Metap2|56307|methionine aminopeptidase 2	BC010263|Metap2|56307|methionine aminopeptidase 2	AF434712|Metap2|56307|methionine aminopeptidase 2	AK165845|Metap2|56307|methionine aminopeptidase 2	BC002213|Metap2|56307|methionine aminopeptidase 2	AK147097|Metap2|56307|methionine aminopeptidase 2	AK159650|Metap2|56307|methionine aminopeptidase 2	AK163318|Metap2|56307|methionine aminopeptidase 2
mm9_v1_chr9_+_70390703_70390723	1.10555	bHLH_family.p2	AK162780|Sltm|66660|SAFB-like, transcription modulator	AK017839|Sltm|66660|SAFB-like, transcription modulator
mm9_v1_chr10_+_80568647_80568919	1.10489	bHLH_family.p2	AK080574|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK172055|Map2k2|26396|mitogen-activated protein kinase kinase 2	NM_023138|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK171584|Map2k2|26396|mitogen-activated protein kinase kinase 2	BC014830|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK143425|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK138130|Map2k2|26396|mitogen-activated protein kinase kinase 2	S68267|Map2k2|26396|mitogen-activated protein kinase kinase 2
mm9_v1_chr19_-_6141100_6141219	1.10459	bHLH_family.p2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr3_-_127111869_127111953	1.10411	bHLH_family.p2	AK047866|Ank2|109676|ankyrin 2, brain	AK084070|Ank2|109676|ankyrin 2, brain	AK036179|Ank2|109676|ankyrin 2, brain	AK166115|Ank2|109676|ankyrin 2, brain	AK046947|Ank2|109676|ankyrin 2, brain
mm9_v1_chrX_+_72661966_72662056	1.10348	bHLH_family.p2	NM_001166457|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_001166459|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_145956|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	S68022|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK149844|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK028483|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK030736|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC021313|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK038919|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK011876|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC048179|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3
mm9_v1_chr7_-_133520899_133520943	1.10298	bHLH_family.p2	BC026854|Spns1|73658|spinster homolog 1 (Drosophila)	AK033907|Spns1|73658|spinster homolog 1 (Drosophila)	AF212372|Spns1|73658|spinster homolog 1 (Drosophila)	AK154353|Spns1|73658|spinster homolog 1 (Drosophila)	AK166931|Spns1|73658|spinster homolog 1 (Drosophila)	AK008721|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr7_-_52384104_52384149	1.10268	bHLH_family.p2	AK007609|Rpl13a|22121|ribosomal protein L13A	AK170030|Rpl13a|22121|ribosomal protein L13A	NM_009438|Rpl13a|22121|ribosomal protein L13A	AK077512|Rpl13a|22121|ribosomal protein L13A	AK146318|Rpl13a|22121|ribosomal protein L13A	AK156035|Rpl13a|22121|ribosomal protein L13A	AK159882|Rpl13a|22121|ribosomal protein L13A	AK168784|Rpl13a|22121|ribosomal protein L13A	AK168903|Rpl13a|22121|ribosomal protein L13A	BC086896|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr8_-_109417431_109417531	1.10192	bHLH_family.p2	AK030924|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK165993|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	NM_145412|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK087721|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK088257|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
mm9_v1_chr18_+_75178449_75178498	1.09917	bHLH_family.p2	AK080149|Dym|69190|dymeclin	AK149628|Dym|69190|dymeclin	AK149879|Dym|69190|dymeclin	AK149891|Dym|69190|dymeclin	AK049909|Dym|69190|dymeclin	AK016957|Dym|69190|dymeclin
mm9_v1_chr2_-_153355706_153355706	1.0968	bHLH_family.p2	AK147524|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001134300|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr6_-_29129579_29129583	1.09573	bHLH_family.p2	BC140954|Prrt4|101359|proline-rich transmembrane protein 4	AK052319|Prrt4|101359|proline-rich transmembrane protein 4	NM_001101443|Prrt4|101359|proline-rich transmembrane protein 4
mm9_v1_chr19_+_37281988_37282110	1.09522	bHLH_family.p2	AK009364|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164336|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164337|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_027314|March5|69104|membrane-associated ring finger (C3HC4) 5	AK009232|March5|69104|membrane-associated ring finger (C3HC4) 5	AK021403|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr11_+_100437204_100437208	1.09509	bHLH_family.p2	AK041969|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK140280|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	NM_001146318|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr6_-_40890495_40890555	1.09289	bHLH_family.p2	AK006951|1700074P13Rik|73481|RIKEN cDNA 1700074P13 gene	BC061035|1700074P13Rik|73481|RIKEN cDNA 1700074P13 gene	AK030264|1700074P13Rik|73481|RIKEN cDNA 1700074P13 gene	NM_028550|1700074P13Rik|73481|RIKEN cDNA 1700074P13 gene
mm9_v1_chr14_-_70828844_70828916	1.09269	bHLH_family.p2	AK030116|Piwil2|57746|piwi-like homolog 2 (Drosophila)	BC138444|Piwil2|57746|piwi-like homolog 2 (Drosophila)	BC145717|Piwil2|57746|piwi-like homolog 2 (Drosophila)	AB032605|Piwil2|57746|piwi-like homolog 2 (Drosophila)	NM_021308|Piwil2|57746|piwi-like homolog 2 (Drosophila)
mm9_v1_chr17_+_35642981_35643044	1.09119	bHLH_family.p2	AB375278|Pou5f1|18999|POU domain, class 5, transcription factor 1	NM_013633|Pou5f1|18999|POU domain, class 5, transcription factor 1	M34381|Pou5f1|18999|POU domain, class 5, transcription factor 1	AK145321|Pou5f1|18999|POU domain, class 5, transcription factor 1	BC068268|Pou5f1|18999|POU domain, class 5, transcription factor 1	AB221654|Pou5f1|18999|POU domain, class 5, transcription factor 1
mm9_v1_chr4_+_140703847_140703905	1.09059	bHLH_family.p2	AK165284|Fbxo42|213499|F-box protein 42	AK151503|Fbxo42|213499|F-box protein 42
mm9_v1_chr4_+_101092307_101092393	1.09058	bHLH_family.p2	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr4_+_128735446_128735514	1.08542	bHLH_family.p2	NM_029219|Rnf19b|75234|ring finger protein 19B
mm9_v1_chr14_+_22318991_22319040	1.08506	bHLH_family.p2	AK147509|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chr5_+_135462067_135462135	1.08423	bHLH_family.p2	AK002672|Cldn3|12739|claudin 3	NM_009902|Cldn3|12739|claudin 3	AK006514|Cldn3|12739|claudin 3	AK012677|Cldn3|12739|claudin 3
mm9_v1_chr7_-_107007401_107007437	1.0838	bHLH_family.p2	AK077510|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	BC050150|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK014310|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr10_-_121534134_121534271	1.08365	bHLH_family.p2	AK075928|Tmem5|216395|transmembrane protein 5	BC020100|Tmem5|216395|transmembrane protein 5	NM_153059|Tmem5|216395|transmembrane protein 5	AK043098|Tmem5|216395|transmembrane protein 5	BC083125|Tmem5|216395|transmembrane protein 5	AK078061|Tmem5|216395|transmembrane protein 5
mm9_v1_chr17_+_37139426_37139615	1.08334	bHLH_family.p2	NM_001168501|Zfp57|22715|zinc finger protein 57	NM_001013745|Zfp57|22715|zinc finger protein 57	AK054083|Zfp57|22715|zinc finger protein 57	AK136241|Zfp57|22715|zinc finger protein 57	AK135881|Zfp57|22715|zinc finger protein 57	AK145368|Zfp57|22715|zinc finger protein 57
mm9_v1_chr9_+_74696269_74696406	1.08297	bHLH_family.p2	AK050237|Onecut1|15379|one cut domain, family member 1	AK051235|Onecut1|15379|one cut domain, family member 1	BC023444|Onecut1|15379|one cut domain, family member 1
mm9_v1_chr11_+_96164905_96165020	1.08222	bHLH_family.p2	BC103595|Hoxb5|15413|homeobox B5	BC103596|Hoxb5|15413|homeobox B5	BC103604|Hoxb5|15413|homeobox B5	BC103607|Hoxb5|15413|homeobox B5	AK133512|Hoxb5|15413|homeobox B5	AK012146|Hoxb5|15413|homeobox B5
mm9_v1_chr14_+_30822097_30822350	1.08188	bHLH_family.p2	NM_001136240|Chdh|218865|choline dehydrogenase	AK052715|Chdh|218865|choline dehydrogenase	AK087570|Chdh|218865|choline dehydrogenase	AK164042|Chdh|218865|choline dehydrogenase
mm9_v1_chr14_-_32454146_32454155	1.08142	bHLH_family.p2	AK041686|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AJ132139|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK050078|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	NM_019975|Hacl1|56794|2-hydroxyacyl-CoA lyase 1
mm9_v1_chr15_-_101573522_101573539	1.08111	bHLH_family.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr2_-_38569891_38570061	1.081	bHLH_family.p2	AF511594|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	BC110476|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	BC110477|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK144376|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK156911|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	AK134378|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1	NM_139051|Nr5a1|26423|nuclear receptor subfamily 5, group A, member 1
mm9_v1_chr18_+_60685819_60685850	1.08038	bHLH_family.p2	AK016059|Dctn4|67665|dynactin 4	AK034292|Dctn4|67665|dynactin 4
mm9_v1_chr11_+_77992224_77992267	1.07867	bHLH_family.p2	AK002265|Tlcd1|68385|TLC domain containing 1	AK161721|Tlcd1|68385|TLC domain containing 1	AK002703|Tlcd1|68385|TLC domain containing 1	BC005702|Tlcd1|68385|TLC domain containing 1	NM_026708|Tlcd1|68385|TLC domain containing 1
mm9_v1_chr15_-_51696910_51697018	1.07789	bHLH_family.p2	AK177719|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	BC014755|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	NM_080635|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK167651|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK003560|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	BC091728|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK149081|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK159113|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H
mm9_v1_chr9_+_81757308_81757350	1.07563	bHLH_family.p2	BC096613|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK082395|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK166209|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK043929|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	NM_175213|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)
mm9_v1_chr19_+_4839365_4839460	1.07511	bHLH_family.p2	NM_207268|Ccdc87|399599|coiled-coil domain containing 87	AK029877|Ccdc87|399599|coiled-coil domain containing 87	BC145660|Ccdc87|399599|coiled-coil domain containing 87
mm9_v1_chr16_-_11087889_11088097	1.07488	bHLH_family.p2	NM_134105|Txndc11|106200|thioredoxin domain containing 11	BC019564|Txndc11|106200|thioredoxin domain containing 11	AK177768|Txndc11|106200|thioredoxin domain containing 11	AK206713|Txndc11|106200|thioredoxin domain containing 11	AK216234|Txndc11|106200|thioredoxin domain containing 11
mm9_v1_chrX_+_136145155_136145229	1.07433	bHLH_family.p2	AB041548|Rnf128|66889|ring finger protein 128	AK004847|Rnf128|66889|ring finger protein 128	AK018582|Rnf128|66889|ring finger protein 128	NM_023270|Rnf128|66889|ring finger protein 128	AK146266|Rnf128|66889|ring finger protein 128	AY112656|Rnf128|66889|ring finger protein 128	AK167031|Rnf128|66889|ring finger protein 128	BC010477|Rnf128|66889|ring finger protein 128	AK008312|Rnf128|66889|ring finger protein 128
mm9_v1_chr10_-_78996387_78996541	1.07237	bHLH_family.p2	AK208995|Ppap2c|50784|phosphatidic acid phosphatase type 2C	AK005452|Ppap2c|50784|phosphatidic acid phosphatase type 2C	BC085104|Ppap2c|50784|phosphatidic acid phosphatase type 2C	BC016635|Ppap2c|50784|phosphatidic acid phosphatase type 2C	BC010332|Ppap2c|50784|phosphatidic acid phosphatase type 2C	AK049581|Ppap2c|50784|phosphatidic acid phosphatase type 2C	NM_015817|Ppap2c|50784|phosphatidic acid phosphatase type 2C
mm9_v1_chr4_-_148511650_148511708	1.07138	bHLH_family.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr5_-_137943570_137943661	1.071	bHLH_family.p2	BC010780|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	AK002782|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	NM_028753|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	AK162268|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm9_v1_chr6_+_56664888_56664904	1.07064	bHLH_family.p2	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chrX_-_83021840_83022157	1.0705	bHLH_family.p2	U48403|Gyk|14933|glycerol kinase	AK008186|Gyk|14933|glycerol kinase	BC003767|Gyk|14933|glycerol kinase	AK169424|Gyk|14933|glycerol kinase	AK088373|Gyk|14933|glycerol kinase	AK044308|Gyk|14933|glycerol kinase	AK169525|Gyk|14933|glycerol kinase	NM_008194|Gyk|14933|glycerol kinase	NM_212444|Gyk|14933|glycerol kinase
mm9_v1_chr18_-_10181789_10181789	1.06893	bHLH_family.p2	BC057154|Rock1|19877|Rho-associated coiled-coil containing protein kinase 1	NM_009071|Rock1|19877|Rho-associated coiled-coil containing protein kinase 1
mm9_v1_chr4_+_108292534_108292631	1.06826	bHLH_family.p2	AK146601|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK043839|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	NM_177045|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK148162|Cc2d1b|319965|coiled-coil and C2 domain containing 1B
mm9_v1_chr17_-_17992130_17992168	1.06493	bHLH_family.p2	BC125424|Has1|15116|hyaluronan synthase1	BC125426|Has1|15116|hyaluronan synthase1	D82964|Has1|15116|hyaluronan synthase1	NM_008215|Has1|15116|hyaluronan synthase1	AK053726|Has1|15116|hyaluronan synthase1
mm9_v1_chrX_-_6952873_6952997	1.0648	bHLH_family.p2	BC137612|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	AK028249|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	NM_019461|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome
mm9_v1_chr11_-_29725524_29725667	1.06399	bHLH_family.p2	BC139107|4931440F15Rik|216622|RIKEN cDNA 4931440F15 gene	BC139123|4931440F15Rik|216622|RIKEN cDNA 4931440F15 gene	AK029918|4931440F15Rik|216622|RIKEN cDNA 4931440F15 gene	NM_176829|4931440F15Rik|216622|RIKEN cDNA 4931440F15 gene
mm9_v1_chr7_-_36181628_36181850	1.06017	bHLH_family.p2	BC096687|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK153918|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK082457|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	NM_178643|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK040248|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK031566|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene	AK166481|C230052I12Rik|101831|RIKEN cDNA C230052I12 gene
mm9_v1_chr2_-_25221101_25221190	1.05925	bHLH_family.p2	BC043307|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077912|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK151942|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	NM_001033293|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK149178|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK168977|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK159787|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077550|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	BC130030|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
mm9_v1_chr19_-_5560556_5560645	1.0589	bHLH_family.p2	AF134805|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AK028577|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AK132478|Ovol1|18426|OVO homolog-like 1 (Drosophila)	NM_019935|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AF134804|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AK003801|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AK132505|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AK132506|Ovol1|18426|OVO homolog-like 1 (Drosophila)	AK144952|Ovol1|18426|OVO homolog-like 1 (Drosophila)	BC021411|Ovol1|18426|OVO homolog-like 1 (Drosophila)
mm9_v1_chr5_+_27588579_27588623	1.05824	bHLH_family.p2	BC048383|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr11_+_120094240_120094260	1.05803	bHLH_family.p2	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr1_-_164670534_164670687	1.05797	bHLH_family.p2	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chrX_+_10294490_10294637	1.0574	bHLH_family.p2	NM_001166635|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	NM_026524|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK160062|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK090003|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK159166|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK172143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC004014|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC052899|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK151153|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr1_-_17087915_17087981	1.0572	bHLH_family.p2	BC120839|Jph1|57339|junctophilin 1	BC137669|Jph1|57339|junctophilin 1
mm9_v1_chr8_-_72758275_72758364	1.0561	bHLH_family.p2	BC048396|Armc6|76813|armadillo repeat containing 6	BC043070|Armc6|76813|armadillo repeat containing 6	BC055779|Armc6|76813|armadillo repeat containing 6	NM_133972|Armc6|76813|armadillo repeat containing 6	AK010815|Armc6|76813|armadillo repeat containing 6	AK081550|Armc6|76813|armadillo repeat containing 6
mm9_v1_chr5_-_134932078_134932131	1.05584	bHLH_family.p2	BC083150|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK079487|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081465|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1
mm9_v1_chr9_+_120868808_120869094	1.05503	bHLH_family.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr5_+_144165482_144165519	1.05446	bHLH_family.p2	NM_025841|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK003515|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK150402|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AJ278133|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK007403|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	BC007146|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chr15_-_100559767_100559810	1.05445	bHLH_family.p2	AK159721|Galnt6|207839|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	AK028506|Galnt6|207839|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	AK155008|Galnt6|207839|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	NM_001161767|Galnt6|207839|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	NM_172451|Galnt6|207839|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
mm9_v1_chr13_-_32430412_32430498	1.05353	bHLH_family.p2	BC031788|Gmds|218138|GDP-mannose 4, 6-dehydratase	NM_146041|Gmds|218138|GDP-mannose 4, 6-dehydratase	BC093502|Gmds|218138|GDP-mannose 4, 6-dehydratase	AK086076|Gmds|218138|GDP-mannose 4, 6-dehydratase
mm9_v1_chr10_+_127759640_127759648	1.05234	bHLH_family.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr2_+_127429570_127429640	1.05199	bHLH_family.p2	AK047438|Mrps5|77721|mitochondrial ribosomal protein S5
mm9_v1_chr2_-_142727172_142727216	1.05169	bHLH_family.p2	NM_001081133|Kif16b|16558|kinesin family member 16B
mm9_v1_chr11_-_76660476_76660569	1.05143	bHLH_family.p2	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr6_-_88577424_88577443	1.05095	bHLH_family.p2	AK014702|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_001142724|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_029013|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	AK016973|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12
mm9_v1_chr3_-_89084872_89084872	1.05044	bHLH_family.p2	AK079266|Efna1|13636|ephrin A1	NM_001162425|Efna1|13636|ephrin A1
mm9_v1_chr14_-_51544497_51544585	1.04993	bHLH_family.p2	BC002296|Osgep|66246|O-sialoglycoprotein endopeptidase	AK167893|Osgep|66246|O-sialoglycoprotein endopeptidase	AK049955|Osgep|66246|O-sialoglycoprotein endopeptidase	AK005291|Osgep|66246|O-sialoglycoprotein endopeptidase	AK049480|Osgep|66246|O-sialoglycoprotein endopeptidase	AK157554|Osgep|66246|O-sialoglycoprotein endopeptidase	AK166415|Osgep|66246|O-sialoglycoprotein endopeptidase	AK076246|Osgep|66246|O-sialoglycoprotein endopeptidase	AK088346|Osgep|66246|O-sialoglycoprotein endopeptidase	AK142730|Osgep|66246|O-sialoglycoprotein endopeptidase	NM_133676|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr11_+_77845814_77845821	1.04974	bHLH_family.p2	NM_183286|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr1_+_75447084_75447084	1.0494	bHLH_family.p2	NM_183022|Accn4|241118|amiloride-sensitive cation channel 4, pituitary
mm9_v1_chr18_+_42671147_42671160	1.04835	bHLH_family.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr7_-_85927910_85927974	1.04804	bHLH_family.p2	AF217090|Mrpl46|67308|mitochondrial ribosomal protein L46	AK014205|Mrpl46|67308|mitochondrial ribosomal protein L46	BC061094|Mrpl46|67308|mitochondrial ribosomal protein L46	NM_023331|Mrpl46|67308|mitochondrial ribosomal protein L46
mm9_v1_chr12_-_86715612_86715842	1.04649	bHLH_family.p2	AK150605|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152656|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC064755|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC085097|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK003676|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK084117|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152643|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	NM_026775|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr3_+_102862151_102862295	1.04642	bHLH_family.p2	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr7_-_123586905_123586945	1.04406	bHLH_family.p2	AK142284|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK013614|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
mm9_v1_chr10_-_80276236_80276250	1.044	bHLH_family.p2	AK009016|Jsrp1|71912|junctional sarcoplasmic reticulum protein 1	AK009578|Jsrp1|71912|junctional sarcoplasmic reticulum protein 1	NM_028001|Jsrp1|71912|junctional sarcoplasmic reticulum protein 1
mm9_v1_chr10_+_79144868_79145048	1.04285	bHLH_family.p2	BC039160|Cdc34|216150|cell division cycle 34 homolog (S. cerevisiae)	NM_177613|Cdc34|216150|cell division cycle 34 homolog (S. cerevisiae)	BC094502|Cdc34|216150|cell division cycle 34 homolog (S. cerevisiae)
mm9_v1_chr10_-_20880559_20880789	1.04133	bHLH_family.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr4_+_144482979_144483095	1.04016	bHLH_family.p2	AK032958|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	X95281|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	AK151419|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_011303|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	BC013540|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr17_+_5941279_5941541	1.04009	bHLH_family.p2	AF041857|Synj2|20975|synaptojanin 2	NM_001113352|Synj2|20975|synaptojanin 2	NM_001113353|Synj2|20975|synaptojanin 2	AK142919|Synj2|20975|synaptojanin 2	BC058749|Synj2|20975|synaptojanin 2	AK148053|Synj2|20975|synaptojanin 2
mm9_v1_chr6_-_124915545_124915560	1.03828	bHLH_family.p2	NM_001164089|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr11_+_48613820_48613894	1.03797	bHLH_family.p2	AK168349|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK166868|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK166786|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK166800|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK017772|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK051226|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK159797|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK161234|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK166945|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK168086|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK168096|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK168196|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK169612|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	NM_008143|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK160739|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	D29802|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	X75313|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK002493|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK166417|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	BC046760|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	BC020322|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	AK160528|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1
mm9_v1_chr12_+_111976198_111976210	1.03639	bHLH_family.p2	AK136417|Wdr20a|69641|WD repeat domain 20A	BC064773|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr11_-_35793590_35793590	1.03561	bHLH_family.p2	AB271907|Wwc1|211652|WW, C2 and coiled-coil domain containing 1	DQ256090|Wwc1|211652|WW, C2 and coiled-coil domain containing 1	NM_170779|Wwc1|211652|WW, C2 and coiled-coil domain containing 1
mm9_v1_chr15_+_100183579_100183639	1.0354	bHLH_family.p2	AB110950|Higd1c|380975|HIG1 domain family, member 1C	BC139180|AB099516|554292|cDNA sequence AB099516	BC139182|AB099516|554292|cDNA sequence AB099516	BC145570|AB099516|554292|cDNA sequence AB099516	AK143923|Mettl7a2|393082|methyltransferase like 7A2	AK144032|AB099516|554292|cDNA sequence AB099516	BC087869|Mettl7a2|393082|methyltransferase like 7A2	BC090971|Mettl7a2|393082|methyltransferase like 7A2	NM_001024672|AB099516|554292|cDNA sequence AB099516	NM_199477|Mettl7a2|393082|methyltransferase like 7A2	AB253944|Mettl7a2|393082|methyltransferase like 7A2
mm9_v1_chr4_-_127006368_127006404	1.03484	bHLH_family.p2	NM_008126|Gjb3|14620|gap junction protein, beta 3	X63099|Gjb3|14620|gap junction protein, beta 3
mm9_v1_chr14_-_75992922_75992922	1.03341	bHLH_family.p2	NM_001164139|Spert|67926|spermatid associated	NM_001164140|Spert|67926|spermatid associated
mm9_v1_chr10_+_80611198_80611320	1.03242	bHLH_family.p2	AK078088|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr6_+_17413930_17414106	1.03227	bHLH_family.p2	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr3_-_116510948_116511083	1.03182	bHLH_family.p2	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chr14_+_76510684_76510739	1.03164	bHLH_family.p2	AK032324|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	NM_013745|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AK156205|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AK009260|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	BC020364|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	BC056192|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AF159549|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1
mm9_v1_chr4_+_45197777_45197777	1.03147	bHLH_family.p2	NM_001081172|Frmpd1|666060|FERM and PDZ domain containing 1
mm9_v1_chr5_-_116872852_116872877	1.0302	bHLH_family.p2	AF273453|Hspb8|80888|heat shock protein 8	BC011219|Hspb8|80888|heat shock protein 8	BC003971|Hspb8|80888|heat shock protein 8	AK005052|Hspb8|80888|heat shock protein 8	NM_030704|Hspb8|80888|heat shock protein 8
mm9_v1_chr2_-_27309917_27310008	1.0297	bHLH_family.p2	AK208466|Brd3|67382|bromodomain containing 3	AK184568|Brd3|67382|bromodomain containing 3	AK190838|Brd3|67382|bromodomain containing 3	AK210005|Brd3|67382|bromodomain containing 3	AK218049|Brd3|67382|bromodomain containing 3	AK010739|Brd3|67382|bromodomain containing 3
mm9_v1_chr19_-_57389256_57389302	1.02952	bHLH_family.p2	AK029371|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr7_-_17641980_17642027	1.02948	bHLH_family.p2	BC120587|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	AF060194|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	NM_016868|Hif3a|53417|hypoxia inducible factor 3, alpha subunit
mm9_v1_chr1_-_158585297_158585426	1.02913	bHLH_family.p2	AK208420|Tor3a|30935|torsin family 3, member A
mm9_v1_chr9_+_90057930_90058082	1.02605	bHLH_family.p2	BC076575|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	BC141173|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	BC145491|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	AY551090|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm9_v1_chr2_+_144096752_144096785	1.02161	bHLH_family.p2	AK031535|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK049565|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	NM_028984|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr10_+_82323085_82323203	1.02153	bHLH_family.p2	NM_001042514|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr17_+_14416508_14416565	1.02108	bHLH_family.p2	NM_022315|Smoc2|64074|SPARC related modular calcium binding 2	AJ249901|Smoc2|64074|SPARC related modular calcium binding 2	AK030958|Smoc2|64074|SPARC related modular calcium binding 2	AK159749|Smoc2|64074|SPARC related modular calcium binding 2	AK160002|Smoc2|64074|SPARC related modular calcium binding 2	AK172312|Smoc2|64074|SPARC related modular calcium binding 2	AK040109|Smoc2|64074|SPARC related modular calcium binding 2	BC019527|Smoc2|64074|SPARC related modular calcium binding 2
mm9_v1_chr9_+_70390659_70390695	1.01998	bHLH_family.p2	AK017715|Sltm|66660|SAFB-like, transcription modulator	AF462146|Sltm|66660|SAFB-like, transcription modulator	NM_025690|Sltm|66660|SAFB-like, transcription modulator	BC139202|Sltm|66660|SAFB-like, transcription modulator	BC145577|Sltm|66660|SAFB-like, transcription modulator
mm9_v1_chr4_-_44181148_44181210	1.01792	bHLH_family.p2	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr5_-_143987485_143987560	1.01572	bHLH_family.p2	AY820308|Spdyb|74673|speedy homolog B (Xenopus laevis)	AK015441|Spdyb|74673|speedy homolog B (Xenopus laevis)	NM_029048|Spdyb|74673|speedy homolog B (Xenopus laevis)
mm9_v1_chr5_-_34125155_34125234	1.01558	bHLH_family.p2	AK193705|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr14_-_20902310_20902393	1.01525	bHLH_family.p2	BC027644|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK031748|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK007941|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK015650|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	NM_026209|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene
mm9_v1_chr19_+_6306456_6306644	1.01497	bHLH_family.p2	NM_001033342|Cdc42bpg|240505|CDC42 binding protein kinase gamma (DMPK-like)
mm9_v1_chr10_-_4752710_4752812	1.01462	bHLH_family.p2	AK054222|Myct1|68632|myc target 1	AK030706|Myct1|68632|myc target 1	AK142963|Myct1|68632|myc target 1	BC096559|Myct1|68632|myc target 1	AY090114|Myct1|68632|myc target 1	AK003845|Myct1|68632|myc target 1	NM_026793|Myct1|68632|myc target 1
mm9_v1_chr12_-_55796770_55796822	1.01426	bHLH_family.p2	AY882557|Eapp|66266|E2F-associated phosphoprotein	AK007442|Eapp|66266|E2F-associated phosphoprotein	AK012800|Eapp|66266|E2F-associated phosphoprotein
mm9_v1_chrX_-_71618556_71618610	1.01373	bHLH_family.p2	EU599043|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599044|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599045|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	BC027440|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	NM_145406|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr7_+_19930419_19930497	1.01191	bHLH_family.p2	NM_001127324|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1	NM_007948|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1	AK088271|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1	BC011224|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1	X07414|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1	AK136733|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1	AK160703|Ercc1|13870|excision repair cross-complementing rodent repair deficiency, complementation group 1
mm9_v1_chr10_-_6979627_6979716	1.01099	bHLH_family.p2	AK082372|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr8_+_3587791_3587801	1.01048	bHLH_family.p2	BC043081|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene	BC048787|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene
mm9_v1_chr13_-_38069696_38069810	1.01009	bHLH_family.p2	
mm9_v1_chr2_+_38367184_38367395	1.00726	bHLH_family.p2	AK029266|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AF218847|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	NM_021606|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK086700|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK011519|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK075836|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK018168|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK004925|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK075717|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK089919|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	BC019524|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK170757|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	NM_001159631|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr13_-_76081244_76081314	1.00683	bHLH_family.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr8_-_87297283_87297318	1.00564	bHLH_family.p2	BC090626|Nfix|18032|nuclear factor I/X
mm9_v1_chr7_-_135090238_135090238	1.00512	bHLH_family.p2	NM_001081374|Prss36|77613|protease, serine, 36
mm9_v1_chr17_-_27270820_27270865	1.00454	bHLH_family.p2	AK013521|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	AK019014|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	NM_026063|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	BC030629|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene
mm9_v1_chr5_+_32438843_32438906	1.00363	bHLH_family.p2	NM_008037|Fosl2|14284|fos-like antigen 2	BC065131|Fosl2|14284|fos-like antigen 2
mm9_v1_chr14_-_27354375_27354387	1.00354	bHLH_family.p2	AK141597|Slmap|83997|sarcolemma associated protein	AK164911|Slmap|83997|sarcolemma associated protein	AK166396|Slmap|83997|sarcolemma associated protein	AK163630|Slmap|83997|sarcolemma associated protein
mm9_v1_chr11_+_72021014_72021160	1.00322	bHLH_family.p2	AK004219|Txndc17|52700|thioredoxin domain containing 17	AK007595|Txndc17|52700|thioredoxin domain containing 17	AK076425|Txndc17|52700|thioredoxin domain containing 17	NM_026559|Txndc17|52700|thioredoxin domain containing 17	AJ344103|Txndc17|52700|thioredoxin domain containing 17	BC030344|Txndc17|52700|thioredoxin domain containing 17	AK169882|Txndc17|52700|thioredoxin domain containing 17	AK013103|Txndc17|52700|thioredoxin domain containing 17
mm9_v1_chr15_+_89203967_89204056	1.00321	bHLH_family.p2	AK086661|4930423K06Rik|74640|RIKEN cDNA 4930423K06 gene
mm9_v1_chr5_+_34886013_34886095	1.00075	bHLH_family.p2	AK150265|Sh3bp2|24055|SH3-domain binding protein 2	NM_001145858|Sh3bp2|24055|SH3-domain binding protein 2	AK155970|Sh3bp2|24055|SH3-domain binding protein 2	AK156912|Sh3bp2|24055|SH3-domain binding protein 2
mm9_v1_chr12_+_101122706_101122828	1.00047	bHLH_family.p2	NM_028354|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK033868|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK014855|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK088990|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK137004|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK079006|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1
mm9_v1_chr14_+_35123922_35124003	1.00044	bHLH_family.p2	BC052724|Glud1|14661|glutamate dehydrogenase 1	BC057347|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr7_+_134944106_134944154	0.998953	bHLH_family.p2	NM_001040684|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	NM_133943|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AK077476|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr16_-_88878143_88878282	0.998233	bHLH_family.p2	AF345296|Krtap16-6|170655|keratin associated protein 16-6	AF345295|Krtap16-5|77918|keratin associated protein 16-5	BC115545|Krtap16-5|77918|keratin associated protein 16-5	BC115546|Krtap16-5|77918|keratin associated protein 16-5	AK020697|Krtap16-5|77918|keratin associated protein 16-5	NM_130857|Krtap16-5|77918|keratin associated protein 16-5
mm9_v1_chr3_+_99057703_99057793	0.997811	bHLH_family.p2	AY662679|Tbx15|21384|T-box 15	AF041822|Tbx15|21384|T-box 15
mm9_v1_chr16_-_95680888_95680987	0.99779	bHLH_family.p2	AK142379|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm9_v1_chr11_-_103265172_103265227	0.996751	bHLH_family.p2	AK154703|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm9_v1_chr7_+_87343496_87343507	0.996024	bHLH_family.p2	DQ073331|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr9_-_21889810_21889832	0.995682	bHLH_family.p2	BC016424|Ecsit|26940|ECSIT homolog (Drosophila)	AF182510|Ecsit|26940|ECSIT homolog (Drosophila)	NM_012029|Ecsit|26940|ECSIT homolog (Drosophila)
mm9_v1_chr8_+_3587675_3587681	0.995037	bHLH_family.p2	AK081728|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene
mm9_v1_chr3_+_90035515_90035692	0.994121	bHLH_family.p2	AK146337|Jtb|23922|jumping translocation breakpoint	NM_206924|Jtb|23922|jumping translocation breakpoint	BC008139|Jtb|23922|jumping translocation breakpoint	AB016490|Jtb|23922|jumping translocation breakpoint	AK004469|Jtb|23922|jumping translocation breakpoint	AK089048|Jtb|23922|jumping translocation breakpoint
mm9_v1_chr5_+_104475948_104476060	0.992088	bHLH_family.p2	AK158058|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	AK004444|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	AK076500|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	NM_028794|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	BC033921|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm9_v1_chr17_-_43013320_43013409	0.991936	bHLH_family.p2	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr2_-_30033944_30034014	0.991058	bHLH_family.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr11_-_69735459_69735459	0.989939	bHLH_family.p2	AY129323|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166593|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr3_-_107877497_107877529	0.9897	bHLH_family.p2	AK192664|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr9_-_58160769_58160855	0.989207	bHLH_family.p2	AF357006|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr2_-_48804672_48804789	0.988433	bHLH_family.p2	BC019748|Orc4|26428|origin recognition complex, subunit 4	BC015072|Orc4|26428|origin recognition complex, subunit 4	AJ003140|Orc4|26428|origin recognition complex, subunit 4	AK011550|Orc4|26428|origin recognition complex, subunit 4	AK012669|Orc4|26428|origin recognition complex, subunit 4	AK049534|Orc4|26428|origin recognition complex, subunit 4	AK084326|Orc4|26428|origin recognition complex, subunit 4	AK010258|Orc4|26428|origin recognition complex, subunit 4	AK169291|Orc4|26428|origin recognition complex, subunit 4	AK076324|Orc4|26428|origin recognition complex, subunit 4	NM_001177313|Orc4|26428|origin recognition complex, subunit 4	NM_011958|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr7_-_139791248_139791319	0.987875	bHLH_family.p2	BC139757|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222444|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222445|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223361|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223362|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223363|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223674|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223675|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	NM_009123|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr19_+_46206383_46206393	0.987151	bHLH_family.p2	NM_007703|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	U97107|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	BC016468|Elovl3|12686|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
mm9_v1_chr14_+_8767143_8767187	0.98711	bHLH_family.p2	AK172258|Flnb|286940|filamin, beta
mm9_v1_chr14_+_67853597_67853948	0.986778	bHLH_family.p2	U92703|Ebf2|13592|early B-cell factor 2	BC049188|Ebf2|13592|early B-cell factor 2	U71189|Ebf2|13592|early B-cell factor 2	U82441|Ebf2|13592|early B-cell factor 2
mm9_v1_chr19_-_45080871_45080957	0.986306	bHLH_family.p2	BC027676|Mrpl43|94067|mitochondrial ribosomal protein L43	BC065812|Mrpl43|94067|mitochondrial ribosomal protein L43	AK076204|Mrpl43|94067|mitochondrial ribosomal protein L43	AB049657|Mrpl43|94067|mitochondrial ribosomal protein L43	AK015357|Mrpl43|94067|mitochondrial ribosomal protein L43	BC048733|Mrpl43|94067|mitochondrial ribosomal protein L43	NM_053164|Mrpl43|94067|mitochondrial ribosomal protein L43
mm9_v1_chr8_+_86671936_86672150	0.985377	bHLH_family.p2	NM_001163752|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	NM_029045|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	AK172075|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	BC075658|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	AK015293|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene
mm9_v1_chr18_+_53335914_53335980	0.9844	bHLH_family.p2	AK145840|Snx2|67804|sorting nexin 2
mm9_v1_chr8_-_73223897_73223993	0.982921	bHLH_family.p2	AK135112|Gm11175|100303737|predicted gene 11175
mm9_v1_chr11_-_87800799_87801034	0.982608	bHLH_family.p2	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr15_-_99288178_99288178	0.981945	bHLH_family.p2	BC072572|Nckap5l|380969|NCK-associated protein 5-like	NM_001001884|Nckap5l|380969|NCK-associated protein 5-like
mm9_v1_chr1_-_36200401_36200606	0.981581	bHLH_family.p2	AK044321|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1
mm9_v1_chr4_+_133074976_133075003	0.980915	bHLH_family.p2	AK158383|1810019J16Rik|69073|RIKEN cDNA 1810019J16 gene
mm9_v1_chr2_+_144649401_144649401	0.980597	bHLH_family.p2	AK005847|1700010M22Rik|66328|RIKEN cDNA 1700010M22 gene	BC048653|1700010M22Rik|66328|RIKEN cDNA 1700010M22 gene	NM_025490|1700010M22Rik|66328|RIKEN cDNA 1700010M22 gene
mm9_v1_chr10_-_75855134_75855275	0.980554	bHLH_family.p2	AY179559|Pcnt|18541|pericentrin (kendrin)
mm9_v1_chr15_-_51697020_51697034	0.978532	bHLH_family.p2	AK146200|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK167815|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK020033|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK088436|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK167844|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK168259|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK168274|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	BC086915|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK160335|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK168553|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK169416|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK168108|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H	AK167928|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H
mm9_v1_chr11_-_77303157_77303183	0.976462	bHLH_family.p2	BC151158|Ankrd13b|268445|ankyrin repeat domain 13b	BC172028|Ankrd13b|268445|ankyrin repeat domain 13b	NM_172945|Ankrd13b|268445|ankyrin repeat domain 13b
mm9_v1_chr2_+_36086008_36086055	0.97516	bHLH_family.p2	AK138432|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK046457|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK142741|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK163609|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170664|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK160886|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC005573|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC023322|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	M34141|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170414|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr9_-_101101334_101101402	0.97485	bHLH_family.p2	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr3_-_107948968_107949026	0.974678	bHLH_family.p2	BC041107|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	BC003462|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK168578|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK133749|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK169067|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK167438|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm9_v1_chr3_-_92819586_92819610	0.97395	bHLH_family.p2	BC060280|Crct1|74175|cysteine-rich C-terminal 1	AK009010|Crct1|74175|cysteine-rich C-terminal 1	NM_028798|Crct1|74175|cysteine-rich C-terminal 1
mm9_v1_chr7_-_4964839_4964843	0.973867	bHLH_family.p2	AK135672|Fiz1|23877|Flt3 interacting zinc finger protein 1	NM_001110330|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr2_-_35316760_35317051	0.972289	bHLH_family.p2	BC006810|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK088605|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M26925|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M85153|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AF297615|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_001145821|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_010283|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK004753|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK159087|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3
mm9_v1_chr9_-_21935019_21935041	0.971622	bHLH_family.p2	NM_007388|Acp5|11433|acid phosphatase 5, tartrate resistant
mm9_v1_chr1_-_121545158_121545240	0.97113	bHLH_family.p2	BC003937|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5
mm9_v1_chr9_+_120480575_120480642	0.97107	bHLH_family.p2	AK141887|Rpl14|67115|ribosomal protein L14	AK010600|Rpl14|67115|ribosomal protein L14	AK002946|Rpl14|67115|ribosomal protein L14	AK007807|Rpl14|67115|ribosomal protein L14	AK012277|Rpl14|67115|ribosomal protein L14	AK013912|Rpl14|67115|ribosomal protein L14	AK167146|Rpl14|67115|ribosomal protein L14	NM_025974|Rpl14|67115|ribosomal protein L14
mm9_v1_chr11_-_121380601_121380655	0.968526	bHLH_family.p2	AK037240|Zfp750|319530|zinc finger protein 750	AK028879|Zfp750|319530|zinc finger protein 750	AK030690|Zfp750|319530|zinc finger protein 750	BC080834|Zfp750|319530|zinc finger protein 750	AK037185|Zfp750|319530|zinc finger protein 750	AK076268|Zfp750|319530|zinc finger protein 750	AK140792|Zfp750|319530|zinc finger protein 750	NM_178763|Zfp750|319530|zinc finger protein 750
mm9_v1_chr5_+_140267449_140267530	0.968401	bHLH_family.p2	AK143654|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	AK143717|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	NM_010757|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	D42124|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	AK153856|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	BC014295|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
mm9_v1_chr5_+_89149887_89150001	0.967665	bHLH_family.p2	AK045695|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK162120|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	NM_026735|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK150016|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK077320|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK172291|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104402|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104403|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK003346|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)
mm9_v1_chr17_-_23820984_23820992	0.966929	bHLH_family.p2	BC058186|Cldn9|56863|claudin 9	NM_020293|Cldn9|56863|claudin 9
mm9_v1_chr11_-_43650152_43650304	0.96552	bHLH_family.p2	Y12738|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chr15_+_81416643_81416789	0.96521	bHLH_family.p2	NM_177821|Ep300|328572|E1A binding protein p300	AK042627|Ep300|328572|E1A binding protein p300	BC144976|Ep300|328572|E1A binding protein p300	BC150681|Ep300|328572|E1A binding protein p300
mm9_v1_chr3_-_107357915_107357990	0.964296	bHLH_family.p2	AK006408|Ubl4b|67591|ubiquitin-like 4B	BC048443|Ubl4b|67591|ubiquitin-like 4B	AK016746|Ubl4b|67591|ubiquitin-like 4B	BC061071|Ubl4b|67591|ubiquitin-like 4B	AK015868|Ubl4b|67591|ubiquitin-like 4B	NM_026261|Ubl4b|67591|ubiquitin-like 4B
mm9_v1_chr2_+_12845713_12845788	0.963306	bHLH_family.p2	AK012076|Pter|19212|phosphotriesterase related	AK135948|Pter|19212|phosphotriesterase related	AK075604|Pter|19212|phosphotriesterase related	U28016|Pter|19212|phosphotriesterase related	BC003793|Pter|19212|phosphotriesterase related	AK178461|Pter|19212|phosphotriesterase related	AK178809|Pter|19212|phosphotriesterase related	AK182714|Pter|19212|phosphotriesterase related	AK207887|Pter|19212|phosphotriesterase related	AK216138|Pter|19212|phosphotriesterase related
mm9_v1_chr6_+_35127603_35127646	0.962769	bHLH_family.p2	AK014419|Nup205|70699|nucleoporin 205	NM_027513|Nup205|70699|nucleoporin 205	AK087717|Nup205|70699|nucleoporin 205	AK148473|Nup205|70699|nucleoporin 205	BC058729|Nup205|70699|nucleoporin 205
mm9_v1_chr15_+_58247016_58247063	0.959974	bHLH_family.p2	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr11_-_115971521_115971577	0.958041	bHLH_family.p2	AK031572|Trim47|217333|tripartite motif-containing 47	BC100317|Trim47|217333|tripartite motif-containing 47
mm9_v1_chr7_-_34981664_34981695	0.95734	bHLH_family.p2	BC115797|Pdcd2l|68079|programmed cell death 2-like	AK077948|Pdcd2l|68079|programmed cell death 2-like	NM_026549|Pdcd2l|68079|programmed cell death 2-like	AK151495|Pdcd2l|68079|programmed cell death 2-like	AK003339|Pdcd2l|68079|programmed cell death 2-like	AK154811|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr10_+_86148239_86148360	0.957186	bHLH_family.p2	AK019015|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK007490|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK017634|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK012122|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK090016|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene
mm9_v1_chr7_-_16872094_16872145	0.957039	bHLH_family.p2	AK134892|Ccdc9|243846|coiled-coil domain containing 9	NM_001136471|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chr10_-_114688440_114688479	0.956255	bHLH_family.p2	BC032087|Tbc1d15|66687|TBC1 domain family, member 15	AK010704|Tbc1d15|66687|TBC1 domain family, member 15	DQ054831|Tbc1d15|66687|TBC1 domain family, member 15
mm9_v1_chr12_+_8797502_8797628	0.956196	bHLH_family.p2	
mm9_v1_chr2_+_173936677_173936751	0.955927	bHLH_family.p2	BC023239|Npepl1|228961|aminopeptidase-like 1	BC055448|Npepl1|228961|aminopeptidase-like 1
mm9_v1_chr9_-_97270363_97270376	0.955109	bHLH_family.p2	BC111825|Trim42|78911|tripartite motif-containing 42	AK019654|Trim42|78911|tripartite motif-containing 42	NM_030219|Trim42|78911|tripartite motif-containing 42
mm9_v1_chr2_+_160557441_160557517	0.95419	bHLH_family.p2	AF027185|Plcg1|18803|phospholipase C, gamma 1
mm9_v1_chr4_-_87452140_87452217	0.954041	bHLH_family.p2	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr19_+_55700193_55700329	0.953554	bHLH_family.p2	
mm9_v1_chr8_+_95198187_95198300	0.953501	bHLH_family.p2	AK035140|Irx6|64379|Iroquois related homeobox 6 (Drosophila)	AK053729|Irx6|64379|Iroquois related homeobox 6 (Drosophila)	NM_022428|Irx6|64379|Iroquois related homeobox 6 (Drosophila)
mm9_v1_chr10_+_51953390_51953445	0.953279	bHLH_family.p2	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr7_-_4959521_4959601	0.951181	bHLH_family.p2	AK182118|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK177756|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr6_+_48543879_48544012	0.951166	bHLH_family.p2	NM_001079901|Repin1|58887|replication initiator 1	NM_001079902|Repin1|58887|replication initiator 1	NM_001079903|Repin1|58887|replication initiator 1	NM_001079904|Repin1|58887|replication initiator 1	NM_001079905|Repin1|58887|replication initiator 1	NM_175099|Repin1|58887|replication initiator 1	AK170797|Repin1|58887|replication initiator 1	BC092301|Repin1|58887|replication initiator 1	AK089041|Repin1|58887|replication initiator 1	AK137310|Repin1|58887|replication initiator 1	BC085128|Repin1|58887|replication initiator 1
mm9_v1_chr17_+_47873941_47874206	0.949952	bHLH_family.p2	NM_001161722|Tcfeb|21425|transcription factor EB	AK078755|Tcfeb|21425|transcription factor EB
mm9_v1_chr17_-_13153182_13153211	0.948969	bHLH_family.p2	AK013275|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2
mm9_v1_chr18_+_35278538_35278551	0.948313	bHLH_family.p2	AK168635|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK036752|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149721|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149738|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK159339|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr2_+_132641920_132642070	0.946426	bHLH_family.p2	AK012845|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK019268|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK133858|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC046780|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK017607|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC052070|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	NM_025676|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)
mm9_v1_chr7_+_146038021_146038054	0.946252	bHLH_family.p2	AK129386|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	AK011198|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr3_+_94778652_94778663	0.945819	bHLH_family.p2	BC079846|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	NM_175356|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK053614|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK172074|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm9_v1_chr6_+_17257720_17257722	0.945153	bHLH_family.p2	AB029930|Cav1|12389|caveolin 1, caveolae protein	AK090074|Cav1|12389|caveolin 1, caveolae protein
mm9_v1_chr17_+_17511515_17511560	0.945021	bHLH_family.p2	AK090011|Riok2|67045|RIO kinase 2 (yeast)	AK008385|Riok2|67045|RIO kinase 2 (yeast)	AK008451|Riok2|67045|RIO kinase 2 (yeast)	AK049232|Riok2|67045|RIO kinase 2 (yeast)	BC010781|Riok2|67045|RIO kinase 2 (yeast)
mm9_v1_chr12_-_55796825_55796870	0.944942	bHLH_family.p2	NM_025456|Eapp|66266|E2F-associated phosphoprotein	BC037622|Eapp|66266|E2F-associated phosphoprotein	AK145027|Eapp|66266|E2F-associated phosphoprotein	AK145041|Eapp|66266|E2F-associated phosphoprotein
mm9_v1_chr16_+_31664188_31664368	0.944207	bHLH_family.p2	AK143780|Dlg1|13383|discs, large homolog 1 (Drosophila)	AY159380|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr10_-_66747843_66748097	0.943785	bHLH_family.p2	AK181810|Nrbf2|641340|nuclear receptor binding factor 2	AK189272|Nrbf2|641340|nuclear receptor binding factor 2	AK205591|Nrbf2|641340|nuclear receptor binding factor 2	AK004200|Nrbf2|641340|nuclear receptor binding factor 2	BC019448|Nrbf2|641340|nuclear receptor binding factor 2	NM_001036293|Nrbf2|641340|nuclear receptor binding factor 2	AK002810|Nrbf2|641340|nuclear receptor binding factor 2
mm9_v1_chr2_+_29475402_29475429	0.942062	bHLH_family.p2	BC129881|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr2_-_58210162_58210168	0.940751	bHLH_family.p2	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr14_-_30822063_30822081	0.940487	bHLH_family.p2	AK045627|Il17rb|50905|interleukin 17 receptor B	NM_019583|Il17rb|50905|interleukin 17 receptor B
mm9_v1_chr14_-_31736727_31736772	0.939645	bHLH_family.p2	X70393|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	BC015276|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	AK146700|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	NM_008407|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3
mm9_v1_chr2_+_36086059_36086082	0.939182	bHLH_family.p2	AK134163|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AY547265|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	CT010314|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr11_+_87983428_87983486	0.937773	bHLH_family.p2	AK162604|Cuedc1|103841|CUE domain containing 1
mm9_v1_chr11_-_101846064_101846112	0.937531	bHLH_family.p2	AF280809|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK008734|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK170772|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	NM_028207|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	BC016269|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm9_v1_chr15_-_38944199_38944296	0.936874	bHLH_family.p2	AK172597|Slc25a32|69906|solute carrier family 25, member 32	AK145178|Slc25a32|69906|solute carrier family 25, member 32	AK172029|Slc25a32|69906|solute carrier family 25, member 32	AK170643|Slc25a32|69906|solute carrier family 25, member 32	NM_172402|Slc25a32|69906|solute carrier family 25, member 32
mm9_v1_chr11_+_69906223_69906270	0.932909	bHLH_family.p2	X53042|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr4_+_24825226_24825304	0.932811	bHLH_family.p2	NM_026742|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK160341|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK034728|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK019042|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	BC028764|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK003553|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm9_v1_chr11_+_100831192_100831209	0.932805	bHLH_family.p2	AK009381|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr4_-_42039325_42039326	0.93265	bHLH_family.p2	NM_001099348|Gm13305|100042555|predicted gene 13305	NM_001100596|Gm2002|100038993|predicted gene 2002	NM_010550|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	U69491|Il11ra2|16158|interleukin 11 receptor, alpha chain 2	X98519|Il11ra2|16158|interleukin 11 receptor, alpha chain 2
mm9_v1_chr11_-_3439172_3439299	0.931471	bHLH_family.p2	BC066192|Smtn|29856|smoothelin	BC069836|Smtn|29856|smoothelin	BC069839|Smtn|29856|smoothelin	BC010599|Smtn|29856|smoothelin	AF064236|Smtn|29856|smoothelin	AJ010305|Smtn|29856|smoothelin	AK166385|Smtn|29856|smoothelin	AK170516|Smtn|29856|smoothelin	AK085412|Smtn|29856|smoothelin	AK030932|Smtn|29856|smoothelin	AK138898|Smtn|29856|smoothelin	NM_001159284|Smtn|29856|smoothelin	NM_013870|Smtn|29856|smoothelin
mm9_v1_chr17_-_86544514_86544514	0.929461	bHLH_family.p2	AK021298|Srbd1|78586|S1 RNA binding domain 1	NM_030133|Srbd1|78586|S1 RNA binding domain 1
mm9_v1_chr4_-_43536259_43536276	0.929417	bHLH_family.p2	M81086|Tpm2|22004|tropomyosin 2, beta	NM_009416|Tpm2|22004|tropomyosin 2, beta
mm9_v1_chr3_-_20174589_20174650	0.929202	bHLH_family.p2	AK003061|Cpb1|76703|carboxypeptidase B1 (tissue)	BC138759|Cpb1|76703|carboxypeptidase B1 (tissue)	BC138762|Cpb1|76703|carboxypeptidase B1 (tissue)	NM_029706|Cpb1|76703|carboxypeptidase B1 (tissue)
mm9_v1_chr17_-_10512217_10512250	0.927552	bHLH_family.p2	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr6_-_137597616_137597640	0.923423	bHLH_family.p2	AK166156|Eps8|13860|epidermal growth factor receptor pathway substrate 8	NM_007945|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr9_+_46076689_46076697	0.922903	bHLH_family.p2	AF327059|Apoa5|66113|apolipoprotein A-V	NM_080434|Apoa5|66113|apolipoprotein A-V
mm9_v1_chrX_-_148802653_148802653	0.922336	bHLH_family.p2	BC096520|Gpr173|70771|G-protein coupled receptor 173	NM_027543|Gpr173|70771|G-protein coupled receptor 173
mm9_v1_chr7_-_91234908_91235022	0.920901	bHLH_family.p2	BC116643|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	BC115873|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AB103331|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK036809|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK162689|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	NM_030728|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene
mm9_v1_chr5_-_92391581_92391802	0.920832	bHLH_family.p2	AK015870|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF305423|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK084295|Thap6|381650|THAP domain containing 6	AK018364|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF276959|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF071222|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK018488|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr10_-_62666659_62666699	0.91965	bHLH_family.p2	AK036458|Mypn|68802|myopalladin	AK220521|Mypn|68802|myopalladin	NM_182992|Mypn|68802|myopalladin
mm9_v1_chr8_+_11556495_11556521	0.919211	bHLH_family.p2	BC016573|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr7_+_52071622_52071810	0.919079	bHLH_family.p2	AK166621|Nup62|18226|nucleoporin 62	BC089317|Nup62|18226|nucleoporin 62	AK149637|Nup62|18226|nucleoporin 62	NM_001171024|Nup62-il4i1|100328588|Nup62-Il4i1 protein	AK169178|Nup62|18226|nucleoporin 62	AK168486|Nup62|18226|nucleoporin 62	AK147894|Nup62|18226|nucleoporin 62	AK133082|Nup62-il4i1|100328588|Nup62-Il4i1 protein	AK155059|Nup62|18226|nucleoporin 62	AK168166|Nup62|18226|nucleoporin 62	AK150087|Nup62|18226|nucleoporin 62	BC005784|Nup62|18226|nucleoporin 62	NM_053074|Nup62|18226|nucleoporin 62	S59342|Nup62|18226|nucleoporin 62
mm9_v1_chr15_-_81560257_81560281	0.919013	bHLH_family.p2	BC052862|Rangap1|19387|RAN GTPase activating protein 1	AK088768|Rangap1|19387|RAN GTPase activating protein 1	AK145459|Rangap1|19387|RAN GTPase activating protein 1	AK129452|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr10_-_77815056_77815248	0.918647	bHLH_family.p2	AK008965|Agpat3|28169|1-acylglycerol-3-phosphate O-acyltransferase 3
mm9_v1_chr1_-_181733742_181733841	0.918391	bHLH_family.p2	BC138343|Ahctf1|226747|AT hook containing transcription factor 1	BC138344|Ahctf1|226747|AT hook containing transcription factor 1	AB059278|Ahctf1|226747|AT hook containing transcription factor 1
mm9_v1_chr2_+_35991917_35991917	0.915626	bHLH_family.p2	NM_026422|Mrrf|67871|mitochondrial ribosome recycling factor
mm9_v1_chr4_-_133843139_133843188	0.915554	bHLH_family.p2	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr9_+_70526702_70526924	0.914602	bHLH_family.p2	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chrX_+_12648604_12648673	0.914573	bHLH_family.p2	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr10_+_82323313_82323353	0.914161	bHLH_family.p2	BC020274|Txnrd1|50493|thioredoxin reductase 1	AK177272|Txnrd1|50493|thioredoxin reductase 1	AK180432|Txnrd1|50493|thioredoxin reductase 1	AK184063|Txnrd1|50493|thioredoxin reductase 1	AK185936|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr16_-_16560240_16560303	0.91387	bHLH_family.p2	BC145523|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402611|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139232|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402613|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139234|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK034504|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK134961|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr17_-_45704908_45704999	0.913549	bHLH_family.p2	
mm9_v1_chr1_+_75356906_75356910	0.91242	bHLH_family.p2	AK131922|Des|13346|desmin	L22550|Des|13346|desmin
mm9_v1_chr10_+_79240035_79240045	0.911546	bHLH_family.p2	AK087247|Fstl3|83554|follistatin-like 3	AF276238|Fstl3|83554|follistatin-like 3	AB024429|Fstl3|83554|follistatin-like 3	AF310616|Fstl3|83554|follistatin-like 3
mm9_v1_chr8_+_11312828_11312937	0.910598	bHLH_family.p2	AK053858|Col4a2|12827|collagen, type IV, alpha 2	NM_009932|Col4a2|12827|collagen, type IV, alpha 2	AK164096|Col4a2|12827|collagen, type IV, alpha 2	BC080789|Col4a2|12827|collagen, type IV, alpha 2	BC107685|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr2_-_119980210_119980230	0.910479	bHLH_family.p2	AB239915|Ehd4|98878|EH-domain containing 4	AB239916|Ehd4|98878|EH-domain containing 4	AF173639|Ehd4|98878|EH-domain containing 4
mm9_v1_chr14_+_48283430_48283453	0.9099	bHLH_family.p2	NM_008477|Ktn1|16709|kinectin 1	L43326|Ktn1|16709|kinectin 1
mm9_v1_chr18_+_12492494_12492679	0.908981	bHLH_family.p2	AJ293592|Lama3|16774|laminin, alpha 3	NM_010680|Lama3|16774|laminin, alpha 3	U88353|Lama3|16774|laminin, alpha 3
mm9_v1_chr8_+_77557582_77557708	0.907125	bHLH_family.p2	NM_001136259|Tom1|21968|target of myb1 homolog (chicken)	NM_011622|Tom1|21968|target of myb1 homolog (chicken)	AJ006972|Tom1|21968|target of myb1 homolog (chicken)	AK051245|Tom1|21968|target of myb1 homolog (chicken)	BC157905|Tom1|21968|target of myb1 homolog (chicken)	BC158042|Tom1|21968|target of myb1 homolog (chicken)	BC021633|Tom1|21968|target of myb1 homolog (chicken)	AK150143|Tom1|21968|target of myb1 homolog (chicken)	AK160403|Tom1|21968|target of myb1 homolog (chicken)	AK028398|Tom1|21968|target of myb1 homolog (chicken)	BC093520|Tom1|21968|target of myb1 homolog (chicken)	AK184431|Tom1|21968|target of myb1 homolog (chicken)
mm9_v1_chr2_-_147872704_147872704	0.907007	bHLH_family.p2	NM_010446|Foxa2|15376|forkhead box A2	X74937|Foxa2|15376|forkhead box A2
mm9_v1_chr2_+_105064498_105064516	0.906936	bHLH_family.p2	NM_001159638|0610012H03Rik|74088|RIKEN cDNA 0610012H03 gene	NM_028747|0610012H03Rik|74088|RIKEN cDNA 0610012H03 gene	AK002603|0610012H03Rik|74088|RIKEN cDNA 0610012H03 gene	AK143809|0610012H03Rik|74088|RIKEN cDNA 0610012H03 gene	BC057916|0610012H03Rik|74088|RIKEN cDNA 0610012H03 gene	BC014740|0610012H03Rik|74088|RIKEN cDNA 0610012H03 gene
mm9_v1_chr19_+_46431369_46431437	0.905353	bHLH_family.p2	NM_029186|Tmem180|75146|transmembrane protein 180	AK151797|Tmem180|75146|transmembrane protein 180	AK161305|Tmem180|75146|transmembrane protein 180	BC058746|Tmem180|75146|transmembrane protein 180	AK031554|Tmem180|75146|transmembrane protein 180	BC031169|Tmem180|75146|transmembrane protein 180
mm9_v1_chr15_-_89255772_89255777	0.903736	bHLH_family.p2	AB010826|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle
mm9_v1_chr14_-_22567834_22567843	0.903141	bHLH_family.p2	AY674052|Dusp13|27389|dual specificity phosphatase 13	NM_001007268|Dusp13|27389|dual specificity phosphatase 13
mm9_v1_chr5_-_20387886_20387948	0.902047	bHLH_family.p2	AK152951|Phtf2|68770|putative homeodomain transcription factor 2	AK035536|Phtf2|68770|putative homeodomain transcription factor 2	AK042382|Phtf2|68770|putative homeodomain transcription factor 2	NM_172992|Phtf2|68770|putative homeodomain transcription factor 2
mm9_v1_chr2_+_164228640_164228712	0.901697	bHLH_family.p2	AK052449|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	NM_009036|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	Y10926|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	BC152311|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	AK131832|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like	AK131814|Rbpjl|19668|recombination signal binding protein for immunoglobulin kappa J region-like
mm9_v1_chr18_-_60872888_60873042	0.900884	bHLH_family.p2	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr9_-_113617224_113617390	0.897702	bHLH_family.p2	AJ005073|Pdcd6ip|18571|programmed cell death 6 interacting protein	AJ005074|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC051123|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC026823|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK167574|Pdcd6ip|18571|programmed cell death 6 interacting protein	AF119955|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK029827|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK129340|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK147736|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK031256|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK033943|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK145893|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK169704|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164677|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164678|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_011052|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chrX_-_34529439_34529513	0.896373	bHLH_family.p2	AB023622|Sept6|56526|septin 6	AK088614|Sept6|56526|septin 6	AK088406|Sept6|56526|septin 6	AK172894|Sept6|56526|septin 6	BC010489|Sept6|56526|septin 6	AK012858|Sept6|56526|septin 6	AK160884|Sept6|56526|septin 6	AK083302|Sept6|56526|septin 6	AK162755|Sept6|56526|septin 6	AK048455|Sept6|56526|septin 6	NM_001177323|Sept6|56526|septin 6
mm9_v1_chr9_+_70390523_70390626	0.89577	bHLH_family.p2	AK077578|Sltm|66660|SAFB-like, transcription modulator	NM_026337|Sltm|66660|SAFB-like, transcription modulator	AK078251|Sltm|66660|SAFB-like, transcription modulator	AK011815|Sltm|66660|SAFB-like, transcription modulator
mm9_v1_chr17_-_33822327_33822413	0.894342	bHLH_family.p2	BC035525|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK159848|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC017539|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC065172|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK168347|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK133911|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK166670|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK169101|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK171892|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK145343|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK011521|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK051976|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK220299|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_001109913|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_029804|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr1_-_99666564_99666675	0.893585	bHLH_family.p2	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr9_-_82869034_82869071	0.89205	bHLH_family.p2	BC022102|Phip|83946|pleckstrin homology domain interacting protein	BC039765|Phip|83946|pleckstrin homology domain interacting protein	AK050025|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr1_-_167090729_167090903	0.889997	bHLH_family.p2	AF345520|Tbx19|83993|T-box 19	BC120635|Tbx19|83993|T-box 19	BC137731|Tbx19|83993|T-box 19	AF348321|Tbx19|83993|T-box 19	AK038666|Tbx19|83993|T-box 19	NM_032005|Tbx19|83993|T-box 19
mm9_v1_chr15_+_102864825_102864872	0.889644	bHLH_family.p2	NM_013553|Hoxc4|15423|homeobox C4	X69019|Hoxc4|15423|homeobox C4	BC144778|Hoxc4|15423|homeobox C4	BC150664|Hoxc4|15423|homeobox C4
mm9_v1_chr3_+_87723608_87723648	0.88941	bHLH_family.p2	AK008117|Mrpl24|67707|mitochondrial ribosomal protein L24	AK008961|Mrpl24|67707|mitochondrial ribosomal protein L24
mm9_v1_chr17_-_32557916_32557924	0.88869	bHLH_family.p2	AF149837|Pglyrp2|57757|peptidoglycan recognition protein 2	AF149838|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315578|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315584|Pglyrp2|57757|peptidoglycan recognition protein 2	AF317548|Pglyrp2|57757|peptidoglycan recognition protein 2	AK050019|Pglyrp2|57757|peptidoglycan recognition protein 2	NM_021319|Pglyrp2|57757|peptidoglycan recognition protein 2
mm9_v1_chr3_+_95392919_95392945	0.888541	bHLH_family.p2	BC027194|Golph3l|229593|golgi phosphoprotein 3-like
mm9_v1_chr8_-_87324043_87324239	0.888387	bHLH_family.p2	Y07688|Nfix|18032|nuclear factor I/X	NM_001081982|Nfix|18032|nuclear factor I/X	NM_010906|Nfix|18032|nuclear factor I/X
mm9_v1_chr4_+_104438905_104438999	0.88513	bHLH_family.p2	AK050313|C8b|110382|complement component 8, beta polypeptide	NM_133882|C8b|110382|complement component 8, beta polypeptide	BC096382|C8b|110382|complement component 8, beta polypeptide	AB077304|C8b|110382|complement component 8, beta polypeptide	AB077305|C8b|110382|complement component 8, beta polypeptide	AB077306|C8b|110382|complement component 8, beta polypeptide
mm9_v1_chr18_-_21810868_21810868	0.883708	bHLH_family.p2	NM_001081403|Klhl14|225266|kelch-like 14 (Drosophila)
mm9_v1_chr10_-_126719287_126719357	0.882482	bHLH_family.p2	AK034474|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr17_+_23957239_23957390	0.881776	bHLH_family.p2	BC027781|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr8_+_116167112_116167131	0.881106	bHLH_family.p2	AY899935|Syce1l|668110|synaptonemal complex central element protein 1 like	AY899936|Syce1l|668110|synaptonemal complex central element protein 1 like	BC141326|Syce1l|668110|synaptonemal complex central element protein 1 like	BC141347|Syce1l|668110|synaptonemal complex central element protein 1 like	NM_001048145|Syce1l|668110|synaptonemal complex central element protein 1 like	NM_029139|Syce1l|668110|synaptonemal complex central element protein 1 like	AK015606|Syce1l|668110|synaptonemal complex central element protein 1 like	BC100478|Syce1l|668110|synaptonemal complex central element protein 1 like
mm9_v1_chr11_+_76031114_76031154	0.880252	bHLH_family.p2	NM_021294|Dbil5|13168|diazepam binding inhibitor-like 5	S83465|Dbil5|13168|diazepam binding inhibitor-like 5	BC048474|Dbil5|13168|diazepam binding inhibitor-like 5	AK006528|Dbil5|13168|diazepam binding inhibitor-like 5
mm9_v1_chr14_-_21487489_21487549	0.879891	bHLH_family.p2	BC137972|Synpo2l|68760|synaptopodin 2-like	BC145070|Synpo2l|68760|synaptopodin 2-like	AK053054|Synpo2l|68760|synaptopodin 2-like	NM_175132|Synpo2l|68760|synaptopodin 2-like
mm9_v1_chr6_+_113392563_113392636	0.879817	bHLH_family.p2	AK141417|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK043698|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK151252|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK170345|Jagn1|67767|jagunal homolog 1 (Drosophila)	BC011296|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK020149|Jagn1|67767|jagunal homolog 1 (Drosophila)	BC025910|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK034671|Jagn1|67767|jagunal homolog 1 (Drosophila)	BC037019|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK017953|Jagn1|67767|jagunal homolog 1 (Drosophila)	NM_026365|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK003673|Jagn1|67767|jagunal homolog 1 (Drosophila)
mm9_v1_chr11_+_29618696_29618843	0.87974	bHLH_family.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr3_-_107499129_107499327	0.879391	bHLH_family.p2	AB092504|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1	BC018218|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr4_+_133074877_133074912	0.878166	bHLH_family.p2	NM_001083916|1810019J16Rik|69073|RIKEN cDNA 1810019J16 gene	NM_133707|1810019J16Rik|69073|RIKEN cDNA 1810019J16 gene
mm9_v1_chr6_-_118369383_118369491	0.876654	bHLH_family.p2	AK133013|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	AK129082|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	AK135031|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	AK028266|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	BC057054|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	NM_194339|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	AK134315|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)	AK162178|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)
mm9_v1_chr11_+_67611772_67611789	0.875855	bHLH_family.p2	NM_001013013|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	AK003267|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C	BC039565|Dhrs7c|68460|dehydrogenase/reductase (SDR family) member 7C
mm9_v1_chr2_+_75670242_75670248	0.874721	bHLH_family.p2	AK053686|Agps|228061|alkylglycerone phosphate synthase	BC063086|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr5_-_140302780_140302843	0.874535	bHLH_family.p2	AK012616|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	BC058692|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	BC027410|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	NM_025604|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	AK019558|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3
mm9_v1_chr8_+_26830480_26830683	0.873016	bHLH_family.p2	NM_028000|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC023111|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK144593|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC089556|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC062173|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK009455|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC099489|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr17_-_26645403_26645422	0.872924	bHLH_family.p2	BC006967|Dusp1|19252|dual specificity phosphatase 1	X61940|Dusp1|19252|dual specificity phosphatase 1	AK159658|Dusp1|19252|dual specificity phosphatase 1	AK150433|Dusp1|19252|dual specificity phosphatase 1	AK152183|Dusp1|19252|dual specificity phosphatase 1	AK152905|Dusp1|19252|dual specificity phosphatase 1	AK159251|Dusp1|19252|dual specificity phosphatase 1	AK159363|Dusp1|19252|dual specificity phosphatase 1	AK159567|Dusp1|19252|dual specificity phosphatase 1	AK167602|Dusp1|19252|dual specificity phosphatase 1	AK168627|Dusp1|19252|dual specificity phosphatase 1	NM_013642|Dusp1|19252|dual specificity phosphatase 1	AK145903|Dusp1|19252|dual specificity phosphatase 1	AK152324|Dusp1|19252|dual specificity phosphatase 1
mm9_v1_chr6_+_49345602_49345605	0.872418	bHLH_family.p2	AF285580|Stk31|77485|serine threonine kinase 31	NM_029916|Stk31|77485|serine threonine kinase 31	BC137989|Stk31|77485|serine threonine kinase 31
mm9_v1_chr9_+_21807437_21807509	0.871277	bHLH_family.p2	AK153931|Prkcsh|19089|protein kinase C substrate 80K-H	AK159705|Prkcsh|19089|protein kinase C substrate 80K-H	AK137661|Prkcsh|19089|protein kinase C substrate 80K-H	NM_008925|Prkcsh|19089|protein kinase C substrate 80K-H	U92794|Prkcsh|19089|protein kinase C substrate 80K-H	BC009816|Prkcsh|19089|protein kinase C substrate 80K-H
mm9_v1_chr12_+_70473519_70473535	0.869741	bHLH_family.p2	AK006366|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr6_+_113102884_113103027	0.869705	bHLH_family.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr6_-_57641998_57642109	0.867238	bHLH_family.p2	AK011515|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK029193|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK032381|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK003713|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK008978|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	NM_025574|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y
mm9_v1_chr13_-_49063376_49063462	0.867036	bHLH_family.p2	AK172909|Fam120a|218236|family with sequence similarity 120, member A
mm9_v1_chr6_-_137597775_137597813	0.866907	bHLH_family.p2	L21671|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr16_-_4001679_4001679	0.866231	bHLH_family.p2	BC065125|Slx4|52864|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	NM_177472|Slx4|52864|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr15_-_78236262_78236306	0.865627	bHLH_family.p2	CT010210|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	U35741|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	BC005644|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	NM_009437|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	AK003953|Tst|22117|thiosulfate sulfurtransferase, mitochondrial
mm9_v1_chr14_+_57021419_57021536	0.865214	bHLH_family.p2	AF190166|Rnf17|30054|ring finger protein 17	AF285585|Rnf17|30054|ring finger protein 17	AY854010|Rnf17|30054|ring finger protein 17	AY854011|Rnf17|30054|ring finger protein 17	NM_001033043|Rnf17|30054|ring finger protein 17	AK136196|Rnf17|30054|ring finger protein 17
mm9_v1_chr11_-_100711785_100712037	0.864828	bHLH_family.p2	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr15_+_76369247_76369393	0.864311	bHLH_family.p2	AK161447|Gpr172b|52710|G protein-coupled receptor 172B	AK142597|Gpr172b|52710|G protein-coupled receptor 172B	AK080449|Gpr172b|52710|G protein-coupled receptor 172B	BC016264|Gpr172b|52710|G protein-coupled receptor 172B	AK152335|Gpr172b|52710|G protein-coupled receptor 172B	AK029579|Gpr172b|52710|G protein-coupled receptor 172B	NM_029643|Gpr172b|52710|G protein-coupled receptor 172B	AK008081|Gpr172b|52710|G protein-coupled receptor 172B	AK032015|Gpr172b|52710|G protein-coupled receptor 172B
mm9_v1_chr11_+_19824374_19824394	0.863733	bHLH_family.p2	BC066013|Spred2|114716|sprouty-related, EVH1 domain containing 2
mm9_v1_chr17_-_56323312_56323363	0.861207	bHLH_family.p2	AY038184|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008854|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK018016|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK133947|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008289|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK162834|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK004074|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK148083|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	NM_080837|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132127|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132129|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed
mm9_v1_chr15_-_75900118_75900213	0.861057	bHLH_family.p2	BC060689|Scrib|105782|scribbled homolog (Drosophila)	BC062888|Scrib|105782|scribbled homolog (Drosophila)	AF441233|Scrib|105782|scribbled homolog (Drosophila)	NM_134089|Scrib|105782|scribbled homolog (Drosophila)	AK122211|Scrib|105782|scribbled homolog (Drosophila)
mm9_v1_chr5_-_5559500_5559542	0.859296	bHLH_family.p2	NM_153116|Gtpbp10|207704|GTP-binding protein 10 (putative)	BC034507|Gtpbp10|207704|GTP-binding protein 10 (putative)	AK139595|Gtpbp10|207704|GTP-binding protein 10 (putative)	AK160252|Gtpbp10|207704|GTP-binding protein 10 (putative)
mm9_v1_chr10_+_41239248_41239438	0.85891	bHLH_family.p2	AK145131|Cd164|53599|CD164 antigen	AK169275|Cd164|53599|CD164 antigen	AB028895|Cd164|53599|CD164 antigen	NM_016898|Cd164|53599|CD164 antigen	AK018009|Cd164|53599|CD164 antigen	BC005414|Cd164|53599|CD164 antigen	AB014464|Cd164|53599|CD164 antigen	AF299345|Cd164|53599|CD164 antigen	AK194033|Cd164|53599|CD164 antigen
mm9_v1_chr2_+_167363769_167363826	0.858748	bHLH_family.p2	X67253|Snai1|20613|snail homolog 1 (Drosophila)	M95604|Snai1|20613|snail homolog 1 (Drosophila)	CT010204|Snai1|20613|snail homolog 1 (Drosophila)	CT010370|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chrX_+_17739762_17739792	0.858019	bHLH_family.p2	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr8_-_109572384_109572545	0.855862	bHLH_family.p2	AK075957|Pdf|68023|peptide deformylase (mitochondrial)	NM_026513|Pdf|68023|peptide deformylase (mitochondrial)
mm9_v1_chr14_+_33599148_33599148	0.85585	bHLH_family.p2	AK007434|1810011H11Rik|69069|RIKEN cDNA 1810011H11 gene	NM_001163616|1810011H11Rik|69069|RIKEN cDNA 1810011H11 gene
mm9_v1_chr16_-_97985323_97985396	0.855821	bHLH_family.p2	BC057871|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AK145203|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AF302127|Ripk4|72388|receptor-interacting serine-threonine kinase 4	NM_023663|Ripk4|72388|receptor-interacting serine-threonine kinase 4	AK010133|Ripk4|72388|receptor-interacting serine-threonine kinase 4
mm9_v1_chr13_+_12658130_12658343	0.855536	bHLH_family.p2	AK160664|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC058721|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	NM_026184|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK004981|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK041951|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC111900|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC112426|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145888|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145890|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AF489856|Ero1lb|67475|ERO1-like beta (S. cerevisiae)
mm9_v1_chr3_+_94176747_94176784	0.855393	bHLH_family.p2	NM_011281|Rorc|19885|RAR-related orphan receptor gamma	AK160122|Rorc|19885|RAR-related orphan receptor gamma	BC014804|Rorc|19885|RAR-related orphan receptor gamma	U43508|Rorc|19885|RAR-related orphan receptor gamma
mm9_v1_chr13_-_115178227_115178301	0.853767	bHLH_family.p2	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr7_+_148641305_148641340	0.853595	bHLH_family.p2	AK076464|Pnpla2|66853|patatin-like phospholipase domain containing 2	AK183970|Pnpla2|66853|patatin-like phospholipase domain containing 2
mm9_v1_chr8_-_86773599_86773659	0.851312	bHLH_family.p2	BC024662|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed	AK146163|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed	AK167785|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed	NM_001007571|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed
mm9_v1_chr12_-_77470450_77470546	0.850326	bHLH_family.p2	NM_001172104|Zbtb25|109929|zinc finger and BTB domain containing 25	AK137486|Zbtb25|109929|zinc finger and BTB domain containing 25	NM_028356|Zbtb25|109929|zinc finger and BTB domain containing 25
mm9_v1_chr2_+_102546576_102546605	0.845941	bHLH_family.p2	AB007812|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138255|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	BC138256|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077515|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_011393|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AB007811|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr8_-_125201971_125202083	0.845616	bHLH_family.p2	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr9_+_64083007_64083016	0.844807	bHLH_family.p2	AB035420|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4	NM_033607|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4	BC139440|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4	BC139441|Uchl4|93841|ubiquitin carboxyl-terminal esterase L4
mm9_v1_chr11_-_22760335_22760479	0.844611	bHLH_family.p2	BC009075|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	NM_001169114|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
mm9_v1_chr17_-_79336374_79336438	0.844069	bHLH_family.p2	U19891|Cebpz|12607|CCAAT/enhancer binding protein zeta	U19892|Cebpz|12607|CCAAT/enhancer binding protein zeta	AK137728|Cebpz|12607|CCAAT/enhancer binding protein zeta	AK158771|Cebpz|12607|CCAAT/enhancer binding protein zeta	AK136173|Cebpz|12607|CCAAT/enhancer binding protein zeta	AK145374|Cebpz|12607|CCAAT/enhancer binding protein zeta	AK155990|Cebpz|12607|CCAAT/enhancer binding protein zeta	AK159081|Cebpz|12607|CCAAT/enhancer binding protein zeta	NM_001024806|Cebpz|12607|CCAAT/enhancer binding protein zeta
mm9_v1_chr10_+_127238205_127238239	0.843624	bHLH_family.p2	AK149404|Rdh16|19683|retinol dehydrogenase 16	NM_009040|Rdh16|19683|retinol dehydrogenase 16	AF030513|Rdh16|19683|retinol dehydrogenase 16	BC089612|Rdh16|19683|retinol dehydrogenase 16
mm9_v1_chr2_+_164323044_164323060	0.843493	bHLH_family.p2	AK162573|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC016520|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC034175|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr14_+_79248971_79249021	0.842644	bHLH_family.p2	NM_027906|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	NM_173758|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	AK089438|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	AK154108|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	AK155177|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene
mm9_v1_chr1_+_75209788_75209798	0.84223	bHLH_family.p2	AK177618|Stk16|20872|serine/threonine kinase 16
mm9_v1_chr16_-_98183757_98183799	0.842201	bHLH_family.p2	BC051176|Zfp295|114565|zinc finger protein 295	AK129313|Zfp295|114565|zinc finger protein 295	AK031118|Zfp295|114565|zinc finger protein 295	AK080932|Zfp295|114565|zinc finger protein 295	AK145072|Zfp295|114565|zinc finger protein 295	AK034057|Zfp295|114565|zinc finger protein 295	NM_001081684|Zfp295|114565|zinc finger protein 295	NM_001081685|Zfp295|114565|zinc finger protein 295	NM_175428|Zfp295|114565|zinc finger protein 295	AK170928|Zfp295|114565|zinc finger protein 295
mm9_v1_chr6_-_129335520_129335520	0.842143	bHLH_family.p2	AK016908|Clec12b|71183|C-type lectin domain family 12, member B	NM_027709|Clec12b|71183|C-type lectin domain family 12, member B
mm9_v1_chr9_-_15162159_15162231	0.841976	bHLH_family.p2	NM_176976|5830418K08Rik|319675|RIKEN cDNA 5830418K08 gene
mm9_v1_chr10_+_85334563_85334634	0.841599	bHLH_family.p2	NM_133993|Pwp1|103136|PWP1 homolog (S. cerevisiae)	AK009972|Pwp1|103136|PWP1 homolog (S. cerevisiae)	BC003199|Pwp1|103136|PWP1 homolog (S. cerevisiae)	BC023137|Pwp1|103136|PWP1 homolog (S. cerevisiae)	AK011891|Pwp1|103136|PWP1 homolog (S. cerevisiae)	AK149699|Pwp1|103136|PWP1 homolog (S. cerevisiae)	AK075805|Pwp1|103136|PWP1 homolog (S. cerevisiae)	AK082158|Pwp1|103136|PWP1 homolog (S. cerevisiae)
mm9_v1_chrX_+_45499599_45499837	0.841538	bHLH_family.p2	AK156202|Sash3|74131|SAM and SH3 domain containing 3	AK004734|Sash3|74131|SAM and SH3 domain containing 3	NM_028773|Sash3|74131|SAM and SH3 domain containing 3	AK171017|Sash3|74131|SAM and SH3 domain containing 3	BC064734|Sash3|74131|SAM and SH3 domain containing 3	AJ306422|Sash3|74131|SAM and SH3 domain containing 3
mm9_v1_chr14_-_27354398_27354416	0.84121	bHLH_family.p2	AK052158|Slmap|83997|sarcolemma associated protein
mm9_v1_chr11_+_120645560_120645605	0.838025	bHLH_family.p2	NM_001177874|Gps1|209318|G protein pathway suppressor 1	AK088490|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chrX_-_11657678_11657678	0.837915	bHLH_family.p2	AK053309|Bcor|71458|BCL6 interacting corepressor	NM_029510|Bcor|71458|BCL6 interacting corepressor	NM_175044|Bcor|71458|BCL6 interacting corepressor	NM_175045|Bcor|71458|BCL6 interacting corepressor	NM_175046|Bcor|71458|BCL6 interacting corepressor
mm9_v1_chr11_+_4999421_4999441	0.837065	bHLH_family.p2	AK156451|Rhbdd3|279766|rhomboid domain containing 3	AK077457|Rhbdd3|279766|rhomboid domain containing 3	NM_177370|Rhbdd3|279766|rhomboid domain containing 3	AK053223|Rhbdd3|279766|rhomboid domain containing 3
mm9_v1_chr11_+_96179580_96179580	0.836638	bHLH_family.p2	BC095947|Hoxb4|15412|homeobox B4	NM_010459|Hoxb4|15412|homeobox B4
mm9_v1_chr9_+_54997159_54997206	0.835023	bHLH_family.p2	AK042515|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2	NM_180600|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2	AK083216|Ube2q2|109161|ubiquitin-conjugating enzyme E2Q (putative) 2
mm9_v1_chr14_-_102039655_102039692	0.834212	bHLH_family.p2	AK004316|Commd6|66200|COMM domain containing 6	AK034223|Commd6|66200|COMM domain containing 6	AK020234|Commd6|66200|COMM domain containing 6	AK018711|Commd6|66200|COMM domain containing 6	AK019351|Commd6|66200|COMM domain containing 6	AK019432|Commd6|66200|COMM domain containing 6	AK008220|Commd6|66200|COMM domain containing 6	AK011226|Commd6|66200|COMM domain containing 6	BC132261|Commd6|66200|COMM domain containing 6	BC132265|Commd6|66200|COMM domain containing 6	BC145360|Commd6|66200|COMM domain containing 6	BC145361|Commd6|66200|COMM domain containing 6	AK009796|Commd6|66200|COMM domain containing 6	NM_001033132|Commd6|66200|COMM domain containing 6	NM_001168592|Commd6|66200|COMM domain containing 6
mm9_v1_chr16_+_65815758_65815952	0.831153	bHLH_family.p2	NM_028572|Vgll3|73569|vestigial like 3 (Drosophila)	BC042696|Vgll3|73569|vestigial like 3 (Drosophila)
mm9_v1_chr8_+_125626249_125626348	0.83111	bHLH_family.p2	NM_016738|Rpl13|270106|ribosomal protein L13	AK003487|Rpl13|270106|ribosomal protein L13	AK010989|Rpl13|270106|ribosomal protein L13	AK002787|Rpl13|270106|ribosomal protein L13	U28917|Rpl13|270106|ribosomal protein L13	BC085493|Rpl13|270106|ribosomal protein L13	BC034449|Rpl13|270106|ribosomal protein L13	BC055358|Rpl13|270106|ribosomal protein L13
mm9_v1_chr15_-_76554192_76554281	0.831079	bHLH_family.p2	AK046662|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	BC026997|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	BC019462|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK053546|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK163615|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK021050|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK165937|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK075645|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK085641|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK140368|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK140578|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	NM_145472|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	NM_176828|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr8_+_77517536_77517607	0.829053	bHLH_family.p2	AK156670|Hmgxb4|70823|HMG box domain containing 4	AK014640|Hmgxb4|70823|HMG box domain containing 4	BC048188|Hmgxb4|70823|HMG box domain containing 4	BC049800|Hmgxb4|70823|HMG box domain containing 4	NM_178017|Hmgxb4|70823|HMG box domain containing 4	BC023721|Hmgxb4|70823|HMG box domain containing 4
mm9_v1_chr17_-_24987239_24987278	0.828866	bHLH_family.p2	AK141973|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	AK157292|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	NM_023480|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	BC011330|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chrX_+_98449866_98450159	0.826085	bHLH_family.p2	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chr11_-_116713389_116713469	0.824933	bHLH_family.p2	AF250132|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr7_+_85928016_85928016	0.824864	bHLH_family.p2	NM_026498|Mrps11|67994|mitochondrial ribosomal protein S11
mm9_v1_chr7_+_112553081_112553135	0.824425	bHLH_family.p2	AK136723|Cnga4|233649|cyclic nucleotide gated channel alpha 4	NM_001033317|Cnga4|233649|cyclic nucleotide gated channel alpha 4	BC107347|Cnga4|233649|cyclic nucleotide gated channel alpha 4	BC107348|Cnga4|233649|cyclic nucleotide gated channel alpha 4
mm9_v1_chr15_-_102008126_102008145	0.823178	bHLH_family.p2	
mm9_v1_chr17_+_34169289_34169362	0.823034	bHLH_family.p2	M84818|Rxrb|20182|retinoid X receptor beta	BC019432|Rxrb|20182|retinoid X receptor beta
mm9_v1_chr19_+_36484237_36484340	0.82303	bHLH_family.p2	AK146133|Pcgf5|76073|polycomb group ring finger 5
mm9_v1_chr2_+_127161893_127161939	0.820855	bHLH_family.p2	AK088059|Dusp2|13537|dual specificity phosphatase 2	AK134067|Dusp2|13537|dual specificity phosphatase 2	NM_010090|Dusp2|13537|dual specificity phosphatase 2	BC048696|Dusp2|13537|dual specificity phosphatase 2	L11330|Dusp2|13537|dual specificity phosphatase 2
mm9_v1_chr2_+_90620127_90620146	0.820249	bHLH_family.p2	BC039616|Fnbp4|55935|formin binding protein 4
mm9_v1_chr4_+_108132677_108132756	0.819236	bHLH_family.p2	BC145507|Zcchc11|230594|zinc finger, CCHC domain containing 11	BC150791|Zcchc11|230594|zinc finger, CCHC domain containing 11
mm9_v1_chr11_-_120509650_120509650	0.817299	bHLH_family.p2	NM_026751|Myadml2|68515|myeloid-associated differentiation marker-like 2
mm9_v1_chr19_-_37281762_37281782	0.817208	bHLH_family.p2	BC128377|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AY313774|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	NM_198300|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr3_+_87723453_87723493	0.817044	bHLH_family.p2	AK003362|Mrpl24|67707|mitochondrial ribosomal protein L24	AK019976|Mrpl24|67707|mitochondrial ribosomal protein L24	AK020157|Mrpl24|67707|mitochondrial ribosomal protein L24	NM_026591|Mrpl24|67707|mitochondrial ribosomal protein L24	AK013394|Mrpl24|67707|mitochondrial ribosomal protein L24	AK016190|Mrpl24|67707|mitochondrial ribosomal protein L24	BC031730|Mrpl24|67707|mitochondrial ribosomal protein L24
mm9_v1_chr4_-_71861756_71861911	0.816728	bHLH_family.p2	BC057573|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AK048515|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AK082499|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AK046402|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)	AY155196|Tle1|21885|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
mm9_v1_chr9_+_56785271_56785306	0.816495	bHLH_family.p2	AK004456|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	BC009145|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	NM_133976|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm9_v1_chr17_+_26813327_26813409	0.815385	bHLH_family.p2	AK017760|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	NM_025272|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK159669|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK134836|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK007610|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK008464|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK168015|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	BC024733|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK013229|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK030335|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E
mm9_v1_chr2_-_29643157_29643203	0.815106	bHLH_family.p2	BC024075|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK167294|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	BC015285|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050583|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK087102|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050587|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK081579|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK043949|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	NM_145520|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm9_v1_chr11_+_70471297_70471326	0.815088	bHLH_family.p2	BC013460|Eno3|13808|enolase 3, beta muscle	NM_007933|Eno3|13808|enolase 3, beta muscle	X62667|Eno3|13808|enolase 3, beta muscle
mm9_v1_chr17_+_31038757_31038830	0.813631	bHLH_family.p2	BC139464|Glp1r|14652|glucagon-like peptide 1 receptor	BC139466|Glp1r|14652|glucagon-like peptide 1 receptor	BC145626|Glp1r|14652|glucagon-like peptide 1 receptor	DQ093397|Glp1r|14652|glucagon-like peptide 1 receptor	DQ093398|Glp1r|14652|glucagon-like peptide 1 receptor	NM_021332|Glp1r|14652|glucagon-like peptide 1 receptor	AJ001692|Glp1r|14652|glucagon-like peptide 1 receptor	BC103624|Glp1r|14652|glucagon-like peptide 1 receptor	BC105649|Glp1r|14652|glucagon-like peptide 1 receptor	BC105650|Glp1r|14652|glucagon-like peptide 1 receptor	AY293742|Glp1r|14652|glucagon-like peptide 1 receptor
mm9_v1_chr1_+_132723258_132723265	0.81186	bHLH_family.p2	AK128944|Pigr|18703|polymeric immunoglobulin receptor	AK142656|Pigr|18703|polymeric immunoglobulin receptor	NM_011082|Pigr|18703|polymeric immunoglobulin receptor
mm9_v1_chr19_+_7344253_7344253	0.811834	bHLH_family.p2	NM_054048|Rcor2|104383|REST corepressor 2	X83587|Rcor2|104383|REST corepressor 2
mm9_v1_chr9_-_118059257_118059259	0.811796	bHLH_family.p2	AK168728|Cmc1|67899|COX assembly mitochondrial protein homolog (S. cerevisiae)
mm9_v1_chr6_-_128312524_128312777	0.811531	bHLH_family.p2	AK029454|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene	AK011109|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene	AK011167|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene	AK020031|5930416I19Rik|72440|RIKEN cDNA 5930416I19 gene
mm9_v1_chr4_-_136391849_136391926	0.811487	bHLH_family.p2	BC043088|Ephb2|13844|Eph receptor B2	NM_010142|Ephb2|13844|Eph receptor B2	BC062924|Ephb2|13844|Eph receptor B2	AK017630|Ephb2|13844|Eph receptor B2	L25890|Ephb2|13844|Eph receptor B2
mm9_v1_chr8_-_129469539_129469702	0.810914	bHLH_family.p2	AK181461|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)	AK185977|Tomm20|67952|translocase of outer mitochondrial membrane 20 homolog (yeast)
mm9_v1_chr7_+_25669603_25669732	0.808575	bHLH_family.p2	AK013524|Rps19|20085|ribosomal protein S19	AK031403|Rps19|20085|ribosomal protein S19	BC086938|Rps19|20085|ribosomal protein S19	AK012052|Rps19|20085|ribosomal protein S19	AK028244|Rps19|20085|ribosomal protein S19	BC034506|Rps19|20085|ribosomal protein S19	AK018725|Rps19|20085|ribosomal protein S19	NM_023133|Rps19|20085|ribosomal protein S19
mm9_v1_chr11_+_114713142_114713183	0.808396	bHLH_family.p2	AK128950|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr6_+_4483741_4483796	0.808042	bHLH_family.p2	BC012438|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr5_-_20387826_20387876	0.806664	bHLH_family.p2	AK037021|Phtf2|68770|putative homeodomain transcription factor 2	BC052841|Phtf2|68770|putative homeodomain transcription factor 2	AK042790|Phtf2|68770|putative homeodomain transcription factor 2	AK163376|Phtf2|68770|putative homeodomain transcription factor 2
mm9_v1_chr3_-_20054899_20054954	0.804267	bHLH_family.p2	AK205608|Gyg|27357|glycogenin	AK209105|Gyg|27357|glycogenin	AF114031|Gyg|27357|glycogenin
mm9_v1_chr7_-_26175113_26175168	0.803895	bHLH_family.p2	BC021642|Lipe|16890|lipase, hormone sensitive	AK169858|Lipe|16890|lipase, hormone sensitive	NM_001039507|Lipe|16890|lipase, hormone sensitive
mm9_v1_chr14_+_99498642_99498692	0.803807	bHLH_family.p2	AK017107|Pibf1|52023|progesterone immunomodulatory binding factor 1	NM_029320|Pibf1|52023|progesterone immunomodulatory binding factor 1	NM_029454|Pibf1|52023|progesterone immunomodulatory binding factor 1
mm9_v1_chr3_-_10351292_10351324	0.802193	bHLH_family.p2	BC023352|Zfand1|66361|zinc finger, AN1-type domain 1	BC025216|Zfand1|66361|zinc finger, AN1-type domain 1	BC046585|Zfand1|66361|zinc finger, AN1-type domain 1	NM_025512|Zfand1|66361|zinc finger, AN1-type domain 1	AK030472|Zfand1|66361|zinc finger, AN1-type domain 1	AK077873|Zfand1|66361|zinc finger, AN1-type domain 1	AK009240|Zfand1|66361|zinc finger, AN1-type domain 1	AK017696|Zfand1|66361|zinc finger, AN1-type domain 1	BC089494|Zfand1|66361|zinc finger, AN1-type domain 1
mm9_v1_chr7_-_16870007_16870007	0.802017	bHLH_family.p2	BC021915|Ccdc9|243846|coiled-coil domain containing 9	NM_172297|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chr7_-_27951432_27951507	0.801757	bHLH_family.p2	AK166661|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr15_-_31531464_31531563	0.801732	bHLH_family.p2	AK129056|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK150390|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK088184|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK167895|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	BC094427|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK136493|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK146425|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK077753|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK133857|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK145445|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	BC092233|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK146405|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	AK153911|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	NM_007637|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)	Z31555|Cct5|12465|chaperonin containing Tcp1, subunit 5 (epsilon)
mm9_v1_chr11_+_4537719_4537795	0.801552	bHLH_family.p2	AK051387|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK048876|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK148105|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	BC013537|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	NM_029291|Ascc2|75452|activating signal cointegrator 1 complex subunit 2
mm9_v1_chr11_-_98636538_98636646	0.800678	bHLH_family.p2	AK041047|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK135640|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	X86010|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137582|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	NM_145434|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137398|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK146430|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr2_+_173603706_173603746	0.800552	bHLH_family.p2	BC024562|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK205322|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK182293|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr1_+_158488917_158488917	0.79985	bHLH_family.p2	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr8_+_89240252_89240401	0.799248	bHLH_family.p2	AK197630|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr11_+_17111895_17111966	0.796544	bHLH_family.p2	NM_178909|Wdr92|103784|WD repeat domain 92	AK088218|Wdr92|103784|WD repeat domain 92	AK047691|Wdr92|103784|WD repeat domain 92	AK142228|Wdr92|103784|WD repeat domain 92	AK033294|Wdr92|103784|WD repeat domain 92	BC096540|Wdr92|103784|WD repeat domain 92
mm9_v1_chr12_+_112916302_112916387	0.795916	bHLH_family.p2	NM_001099792|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	NM_001099793|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	NM_177374|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	AK133579|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	AK049138|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	AK032824|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	BC051186|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)
mm9_v1_chr11_+_102137867_102137884	0.795325	bHLH_family.p2	AK038411|Asb16|217217|ankyrin repeat and SOCS box-containing 16
mm9_v1_chr11_-_60590750_60590788	0.794932	bHLH_family.p2	AK164443|Top3a|21975|topoisomerase (DNA) III alpha	AK037640|Top3a|21975|topoisomerase (DNA) III alpha	AK170291|Top3a|21975|topoisomerase (DNA) III alpha	AK171286|Top3a|21975|topoisomerase (DNA) III alpha
mm9_v1_chr4_-_129317895_129318048	0.794382	bHLH_family.p2	AK135290|Txlna|109658|taxilin alpha	AK160829|Txlna|109658|taxilin alpha	AK168418|Txlna|109658|taxilin alpha
mm9_v1_chr17_-_24345953_24346086	0.793061	bHLH_family.p2	AF149094|Ntn3|18209|netrin 3	AF152418|Ntn3|18209|netrin 3
mm9_v1_chr5_+_146890818_146890870	0.793	bHLH_family.p2	NM_001105160|Cyp3a59|100041449|cytochrome P450, subfamily 3A, polypeptide 59
mm9_v1_chr6_+_30351902_30351953	0.792797	bHLH_family.p2	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr13_-_101500801_101500875	0.792478	bHLH_family.p2	AK145759|Cdk7|12572|cyclin-dependent kinase 7	U11822|Cdk7|12572|cyclin-dependent kinase 7	BC141043|Cdk7|12572|cyclin-dependent kinase 7	BC004605|Cdk7|12572|cyclin-dependent kinase 7
mm9_v1_chr10_+_83185609_83185706	0.791567	bHLH_family.p2	BC048550|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	NM_001145198|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK012407|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK005183|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene
mm9_v1_chr1_+_33776715_33776982	0.790596	bHLH_family.p2	AK163909|Rab23|19335|RAB23, member RAS oncogene family	AK047068|Rab23|19335|RAB23, member RAS oncogene family	NM_008999|Rab23|19335|RAB23, member RAS oncogene family	AK164057|Rab23|19335|RAB23, member RAS oncogene family	AK054079|Rab23|19335|RAB23, member RAS oncogene family	AK082017|Rab23|19335|RAB23, member RAS oncogene family	BC025578|Rab23|19335|RAB23, member RAS oncogene family	AK045454|Rab23|19335|RAB23, member RAS oncogene family
mm9_v1_chr7_-_108160498_108160526	0.789848	bHLH_family.p2	BC006613|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	AK005013|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	NM_008773|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	AK017378|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2	AK156185|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2
mm9_v1_chr19_+_37772297_37772373	0.789566	bHLH_family.p2	NM_007811|Cyp26a1|13082|cytochrome P450, family 26, subfamily a, polypeptide 1	Y12657|Cyp26a1|13082|cytochrome P450, family 26, subfamily a, polypeptide 1	AF115769|Cyp26a1|13082|cytochrome P450, family 26, subfamily a, polypeptide 1
mm9_v1_chr17_-_13185043_13185130	0.789546	bHLH_family.p2	BC046416|Wtap|60532|Wilms' tumour 1-associating protein	BC047338|Wtap|60532|Wilms' tumour 1-associating protein	BC093504|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113532|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113533|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr18_-_64820573_64820653	0.789182	bHLH_family.p2	AK036959|Atp8b1|54670|ATPase, class I, type 8B, member 1	NM_001001488|Atp8b1|54670|ATPase, class I, type 8B, member 1
mm9_v1_chr7_-_126864266_126864324	0.789129	bHLH_family.p2	BC004776|Thumpd1|233802|THUMP domain containing 1	NM_145585|Thumpd1|233802|THUMP domain containing 1	AK084107|Thumpd1|233802|THUMP domain containing 1	AK152912|Thumpd1|233802|THUMP domain containing 1	AK032078|Thumpd1|233802|THUMP domain containing 1
mm9_v1_chr2_+_164323024_164323043	0.788263	bHLH_family.p2	NM_133779|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049171|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049990|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK019717|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK090020|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK155057|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153462|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153464|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK044499|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK157226|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr15_+_38944419_38944480	0.788167	bHLH_family.p2	NM_198606|Dcaf13|223499|DDB1 and CUL4 associated factor 13	BC060375|Dcaf13|223499|DDB1 and CUL4 associated factor 13
mm9_v1_chr15_-_81560283_81560301	0.787027	bHLH_family.p2	BC071200|Rangap1|19387|RAN GTPase activating protein 1	AK159009|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr11_+_4773977_4774007	0.786743	bHLH_family.p2	AK031804|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AK013140|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AK147786|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AJ001260|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	NM_008698|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	BC010837|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm9_v1_chr19_-_29038643_29038643	0.786342	bHLH_family.p2	AK031997|4430402I18Rik|381218|RIKEN cDNA 4430402I18 gene	NM_198651|4430402I18Rik|381218|RIKEN cDNA 4430402I18 gene
mm9_v1_chr16_+_4037100_4037153	0.78625	bHLH_family.p2	BC030394|Dnase1|13419|deoxyribonuclease I	D83038|Dnase1|13419|deoxyribonuclease I	NM_010061|Dnase1|13419|deoxyribonuclease I	AK158070|Dnase1|13419|deoxyribonuclease I	BC014718|Dnase1|13419|deoxyribonuclease I
mm9_v1_chr3_-_89802501_89802651	0.785976	bHLH_family.p2	AF465243|Hax1|23897|HCLS1 associated X-1	BC006688|Hax1|23897|HCLS1 associated X-1	BC147481|Hax1|23897|HCLS1 associated X-1	BC098225|Hax1|23897|HCLS1 associated X-1	AK002256|Hax1|23897|HCLS1 associated X-1	AK135138|Hax1|23897|HCLS1 associated X-1	AF023482|Hax1|23897|HCLS1 associated X-1	AF023483|Hax1|23897|HCLS1 associated X-1	NM_011826|Hax1|23897|HCLS1 associated X-1	AK010633|Hax1|23897|HCLS1 associated X-1	AK088746|Hax1|23897|HCLS1 associated X-1
mm9_v1_chr13_-_12350266_12350476	0.785765	bHLH_family.p2	BC145683|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	BC145685|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	NM_001081128|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	AK142258|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	AK037599|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase
mm9_v1_chr6_+_67216948_67217032	0.784745	bHLH_family.p2	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr11_-_117734712_117734839	0.783209	bHLH_family.p2	AY219872|Tha1|71776|threonine aldolase 1	BC055825|Tha1|71776|threonine aldolase 1	AK005036|Tha1|71776|threonine aldolase 1	AY219871|Tha1|71776|threonine aldolase 1	NM_027919|Tha1|71776|threonine aldolase 1
mm9_v1_chr12_-_76770488_76770523	0.783089	bHLH_family.p2	BC111903|Wdr89|72338|WD repeat domain 89	BC112430|Wdr89|72338|WD repeat domain 89	AK011125|Wdr89|72338|WD repeat domain 89	NM_028203|Wdr89|72338|WD repeat domain 89
mm9_v1_chr17_-_23981121_23981138	0.782788	bHLH_family.p2	AK016509|Prss41|71003|protease, serine, 41	AB049453|Prss41|71003|protease, serine, 41	NM_027644|Prss41|71003|protease, serine, 41	AK049297|Prss41|71003|protease, serine, 41	BC145586|Prss41|71003|protease, serine, 41	BC150797|Prss41|71003|protease, serine, 41
mm9_v1_chr3_-_108013364_108013419	0.781154	bHLH_family.p2	BC094547|Atxn7l2|72522|ataxin 7-like 2
mm9_v1_chrX_+_135448968_135449043	0.781137	bHLH_family.p2	NM_013724|Nrk|27206|Nik related kinase	AK041377|Nrk|27206|Nik related kinase	BC068311|Nrk|27206|Nik related kinase	AB020741|Nrk|27206|Nik related kinase
mm9_v1_chr7_-_31729018_31729052	0.781133	bHLH_family.p2	BC021587|Hamp|84506|hepcidin antimicrobial peptide	AF297664|Hamp|84506|hepcidin antimicrobial peptide	AF503444|Hamp|84506|hepcidin antimicrobial peptide	NM_032541|Hamp|84506|hepcidin antimicrobial peptide
mm9_v1_chr5_-_137774729_137774738	0.780475	bHLH_family.p2	BC046982|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9
mm9_v1_chr6_+_124462638_124462669	0.780005	bHLH_family.p2	NM_023143|C1ra|50909|complement component 1, r subcomponent A	AF148216|C1ra|50909|complement component 1, r subcomponent A
mm9_v1_chr4_-_148800731_148800857	0.779511	bHLH_family.p2	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr2_-_84680194_84680204	0.777383	bHLH_family.p2	AK082011|D930003E18Rik|100048911|RIKEN cDNA D930003E18 gene
mm9_v1_chr10_-_87819740_87819750	0.777201	bHLH_family.p2	BC021433|Dram1|71712|DNA-damage regulated autophagy modulator 1	AK151184|Dram1|71712|DNA-damage regulated autophagy modulator 1
mm9_v1_chr2_-_25211822_25211914	0.776916	bHLH_family.p2	AF285235|Dpp7|83768|dipeptidylpeptidase 7	AK028293|Dpp7|83768|dipeptidylpeptidase 7	BC027205|Dpp7|83768|dipeptidylpeptidase 7	NM_031843|Dpp7|83768|dipeptidylpeptidase 7	AK154193|Dpp7|83768|dipeptidylpeptidase 7	BC052861|Dpp7|83768|dipeptidylpeptidase 7	AK140406|Dpp7|83768|dipeptidylpeptidase 7	AK140420|Dpp7|83768|dipeptidylpeptidase 7
mm9_v1_chrX_-_6765768_6765839	0.775994	bHLH_family.p2	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr2_-_56976258_56976330	0.775267	bHLH_family.p2	AB014889|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr17_-_33918501_33918527	0.775093	bHLH_family.p2	AK014564|Angptl4|57875|angiopoietin-like 4	NM_020581|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr7_-_56136405_56136410	0.774962	bHLH_family.p2	AK084513|E2f8|108961|E2F transcription factor 8	NM_001013368|E2f8|108961|E2F transcription factor 8
mm9_v1_chr3_-_131047840_131047850	0.774307	bHLH_family.p2	NM_028943|Sgms2|74442|sphingomyelin synthase 2	BC117782|Sgms2|74442|sphingomyelin synthase 2	AK016659|Sgms2|74442|sphingomyelin synthase 2
mm9_v1_chr5_+_32000312_32000424	0.773327	bHLH_family.p2	AK156929|Bre|107976|brain and reproductive organ-expressed protein	AK020047|Bre|107976|brain and reproductive organ-expressed protein	BC061000|Bre|107976|brain and reproductive organ-expressed protein	AK050695|Bre|107976|brain and reproductive organ-expressed protein	AK080991|Bre|107976|brain and reproductive organ-expressed protein	AK166884|Bre|107976|brain and reproductive organ-expressed protein	AF440752|Bre|107976|brain and reproductive organ-expressed protein	AF527952|Bre|107976|brain and reproductive organ-expressed protein	AF527953|Bre|107976|brain and reproductive organ-expressed protein	AF527954|Bre|107976|brain and reproductive organ-expressed protein	AF527955|Bre|107976|brain and reproductive organ-expressed protein	AF538925|Bre|107976|brain and reproductive organ-expressed protein	NM_144541|Bre|107976|brain and reproductive organ-expressed protein	NM_181279|Bre|107976|brain and reproductive organ-expressed protein	NM_181280|Bre|107976|brain and reproductive organ-expressed protein	NM_181281|Bre|107976|brain and reproductive organ-expressed protein	NM_181282|Bre|107976|brain and reproductive organ-expressed protein
mm9_v1_chr2_-_29108499_29108525	0.772953	bHLH_family.p2	AK079298|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene	BC066084|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene	AK018312|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene
mm9_v1_chr1_+_75432535_75432608	0.772466	bHLH_family.p2	AK144311|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK150473|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK182835|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK198797|Gmppa|69080|GDP-mannose pyrophosphorylase A	BC008116|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr10_+_77512586_77512759	0.771989	bHLH_family.p2	AK010434|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	NM_019448|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	BC083147|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	AJ404467|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	AF220524|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like
mm9_v1_chr16_-_94591826_94592078	0.771982	bHLH_family.p2	AF216308|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC061117|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159619|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159620|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	AF216307|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr19_+_16510156_16510251	0.771868	bHLH_family.p2	NM_008137|Gna14|14675|guanine nucleotide binding protein, alpha 14	AK085444|Gna14|14675|guanine nucleotide binding protein, alpha 14
mm9_v1_chr18_+_24812191_24812191	0.771417	bHLH_family.p2	BC113180|Mocos|68591|molybdenum cofactor sulfurase	BC113786|Mocos|68591|molybdenum cofactor sulfurase	NM_026779|Mocos|68591|molybdenum cofactor sulfurase
mm9_v1_chr17_+_36116868_36116882	0.771258	bHLH_family.p2	BC013243|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr2_+_104657018_104657084	0.771224	bHLH_family.p2	AK009882|2310047K21Rik|71928|RIKEN cDNA 2310047K21 gene
mm9_v1_chr9_-_119066057_119066210	0.770865	bHLH_family.p2	AK160568|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	BC019882|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	AK145953|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	AY273812|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	NM_146230|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B
mm9_v1_chr8_+_125091925_125091959	0.770722	bHLH_family.p2	AK076527|Cdt1|67177|chromatin licensing and DNA replication factor 1	AB086655|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK012041|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK017609|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK083015|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK028287|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK049163|Cdt1|67177|chromatin licensing and DNA replication factor 1	BC013842|Cdt1|67177|chromatin licensing and DNA replication factor 1
mm9_v1_chr11_+_69804871_69804873	0.770436	bHLH_family.p2	NM_019749|Gabarap|56486|gamma-aminobutyric acid receptor associated protein	BC030350|Gabarap|56486|gamma-aminobutyric acid receptor associated protein
mm9_v1_chr9_+_107449628_107449790	0.768878	bHLH_family.p2	AK132332|Zmynd10|114602|zinc finger, MYND domain containing 10	BC052357|Zmynd10|114602|zinc finger, MYND domain containing 10	NM_053253|Zmynd10|114602|zinc finger, MYND domain containing 10	AF123386|Zmynd10|114602|zinc finger, MYND domain containing 10
mm9_v1_chr17_-_12511525_12511663	0.768681	bHLH_family.p2	BC058719|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	NM_011948|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	U85607|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	U85608|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK014185|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK035823|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK133605|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4
mm9_v1_chrX_+_10294707_10294726	0.766575	bHLH_family.p2	AK131619|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK014143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr18_+_67934517_67934670	0.766244	bHLH_family.p2	AK143727|Seh1l|72124|SEH1-like (S. cerevisiae	NM_001039088|Seh1l|72124|SEH1-like (S. cerevisiae	NM_028112|Seh1l|72124|SEH1-like (S. cerevisiae	AK170591|Seh1l|72124|SEH1-like (S. cerevisiae	BC027244|Seh1l|72124|SEH1-like (S. cerevisiae	AK011330|Seh1l|72124|SEH1-like (S. cerevisiae	AK169231|Seh1l|72124|SEH1-like (S. cerevisiae	AK169388|Seh1l|72124|SEH1-like (S. cerevisiae	AK088835|Seh1l|72124|SEH1-like (S. cerevisiae	AK166573|Seh1l|72124|SEH1-like (S. cerevisiae
mm9_v1_chr11_+_87983066_87983095	0.765099	bHLH_family.p2	NM_001172099|Cuedc1|103841|CUE domain containing 1	BC131989|Cuedc1|103841|CUE domain containing 1	BC131991|Cuedc1|103841|CUE domain containing 1	BC145206|Cuedc1|103841|CUE domain containing 1
mm9_v1_chr7_+_146038277_146038301	0.764541	bHLH_family.p2	AK005033|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr7_+_95578782_95579025	0.763863	bHLH_family.p2	AK054253|Rab38|72433|RAB38, member of RAS oncogene family	NM_028238|Rab38|72433|RAB38, member of RAS oncogene family	AK165682|Rab38|72433|RAB38, member of RAS oncogene family	AK044783|Rab38|72433|RAB38, member of RAS oncogene family	AK009296|Rab38|72433|RAB38, member of RAS oncogene family	AY062237|Rab38|72433|RAB38, member of RAS oncogene family	BC089578|Rab38|72433|RAB38, member of RAS oncogene family	AB232634|Rab38|72433|RAB38, member of RAS oncogene family	AK198599|Rab38|72433|RAB38, member of RAS oncogene family
mm9_v1_chr4_+_123594654_123594675	0.763301	bHLH_family.p2	NM_017475|Rragc|54170|Ras-related GTP binding C
mm9_v1_chr15_-_103070227_103070257	0.763193	bHLH_family.p2	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr8_-_124956759_124956863	0.763143	bHLH_family.p2	M31775|Cyba|13057|cytochrome b-245, alpha polypeptide	EU791539|Cyba|13057|cytochrome b-245, alpha polypeptide	BC026791|Cyba|13057|cytochrome b-245, alpha polypeptide	AK018713|Cyba|13057|cytochrome b-245, alpha polypeptide	AK131580|Cyba|13057|cytochrome b-245, alpha polypeptide	AK171748|Cyba|13057|cytochrome b-245, alpha polypeptide	AK078854|Cyba|13057|cytochrome b-245, alpha polypeptide	AK021200|Cyba|13057|cytochrome b-245, alpha polypeptide	AK152414|Cyba|13057|cytochrome b-245, alpha polypeptide	NM_007806|Cyba|13057|cytochrome b-245, alpha polypeptide
mm9_v1_chr18_+_24812370_24812394	0.762625	bHLH_family.p2	AK076385|Mocos|68591|molybdenum cofactor sulfurase	BC016223|Mocos|68591|molybdenum cofactor sulfurase
mm9_v1_chr11_-_103273956_103274013	0.761846	bHLH_family.p2	BC053079|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	NM_183034|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK155357|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK157752|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm9_v1_chr7_-_133645796_133645958	0.761208	bHLH_family.p2	AK158626|Atxn2l|233871|ataxin 2-like	AK168745|Atxn2l|233871|ataxin 2-like
mm9_v1_chr17_-_56702631_56702768	0.761186	bHLH_family.p2	AK214865|Safb2|224902|scaffold attachment factor B2
mm9_v1_chr2_-_29103559_29103618	0.760304	bHLH_family.p2	AB052336|Ntng2|171171|netrin G2	AB052337|Ntng2|171171|netrin G2	AB052338|Ntng2|171171|netrin G2	AF475079|Ntng2|171171|netrin G2	AF475080|Ntng2|171171|netrin G2	NM_133500|Ntng2|171171|netrin G2	NM_133501|Ntng2|171171|netrin G2	BC141258|Ntng2|171171|netrin G2	BC145600|Ntng2|171171|netrin G2
mm9_v1_chr5_-_125029032_125029085	0.759514	bHLH_family.p2	BC003426|Eif2b1|209354|eukaryotic translation initiation factor 2B, subunit 1 (alpha)	AK088066|Eif2b1|209354|eukaryotic translation initiation factor 2B, subunit 1 (alpha)	AK133695|Eif2b1|209354|eukaryotic translation initiation factor 2B, subunit 1 (alpha)	NM_145371|Eif2b1|209354|eukaryotic translation initiation factor 2B, subunit 1 (alpha)
mm9_v1_chr11_+_70658310_70658476	0.759462	bHLH_family.p2	AK205489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AB001750|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	D86066|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129853|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129854|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248490|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr5_-_110715027_110715078	0.759067	bHLH_family.p2	BC057975|Pxmp2|19301|peroxisomal membrane protein 2	AF309644|Pxmp2|19301|peroxisomal membrane protein 2	AK003118|Pxmp2|19301|peroxisomal membrane protein 2
mm9_v1_chr14_-_30821981_30822017	0.758907	bHLH_family.p2	BC026546|Il17rb|50905|interleukin 17 receptor B	AF208108|Il17rb|50905|interleukin 17 receptor B	AF208109|Il17rb|50905|interleukin 17 receptor B	AK050139|Il17rb|50905|interleukin 17 receptor B
mm9_v1_chr10_+_87323855_87324094	0.758665	bHLH_family.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr11_-_60590669_60590737	0.758258	bHLH_family.p2	BC099689|Top3a|21975|topoisomerase (DNA) III alpha
mm9_v1_chr4_-_129012546_129012617	0.757836	bHLH_family.p2	U35141|Rbbp4|19646|retinoblastoma binding protein 4	AK166437|Rbbp4|19646|retinoblastoma binding protein 4	AK082419|Rbbp4|19646|retinoblastoma binding protein 4	BC138568|Rbbp4|19646|retinoblastoma binding protein 4	BC138570|Rbbp4|19646|retinoblastoma binding protein 4	NM_009030|Rbbp4|19646|retinoblastoma binding protein 4
mm9_v1_chr2_+_151668662_151668699	0.757589	bHLH_family.p2	AK020904|Rspo4|228770|R-spondin family, member 4	AK043484|Rspo4|228770|R-spondin family, member 4	NM_001040689|Rspo4|228770|R-spondin family, member 4	BC048707|Rspo4|228770|R-spondin family, member 4	BC116367|Rspo4|228770|R-spondin family, member 4
mm9_v1_chr6_-_124915441_124915537	0.757308	bHLH_family.p2	AK013155|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010726|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010417|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK019122|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK008474|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr18_+_42671130_42671146	0.75723	bHLH_family.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr7_+_148153974_148154146	0.75544	bHLH_family.p2	NM_001112715|Ifitm1|68713|interferon induced transmembrane protein 1	BC090972|Ifitm1|68713|interferon induced transmembrane protein 1	AK004121|Ifitm1|68713|interferon induced transmembrane protein 1	AK169960|Ifitm1|68713|interferon induced transmembrane protein 1	BC090258|Ifitm1|68713|interferon induced transmembrane protein 1
mm9_v1_chr11_-_82684653_82684724	0.75493	bHLH_family.p2	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr11_-_75003955_75003987	0.754299	bHLH_family.p2	BC044663|Dph1|116905|DPH1 homolog (S. cerevisiae)	BC080761|Dph1|116905|DPH1 homolog (S. cerevisiae)	AK015645|Dph1|116905|DPH1 homolog (S. cerevisiae)	AK128996|Dph1|116905|DPH1 homolog (S. cerevisiae)	AY078170|Dph1|116905|DPH1 homolog (S. cerevisiae)	NM_144491|Dph1|116905|DPH1 homolog (S. cerevisiae)	AK082812|Dph1|116905|DPH1 homolog (S. cerevisiae)
mm9_v1_chr1_+_189821727_189821874	0.748936	bHLH_family.p2	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr4_+_137024656_137024742	0.746911	bHLH_family.p2	AK147294|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	AK147396|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	NM_008305|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)
mm9_v1_chr10_+_97155692_97155767	0.746174	bHLH_family.p2	AK006212|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	AK014860|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	NM_025724|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	BC120881|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene	BC120882|4921510H08Rik|66716|RIKEN cDNA 4921510H08 gene
mm9_v1_chr6_-_43259527_43259552	0.743339	bHLH_family.p2	AB221582|Nobox|18291|NOBOX oogenesis homeobox	BC125280|Nobox|18291|NOBOX oogenesis homeobox	BC125282|Nobox|18291|NOBOX oogenesis homeobox	AY061761|Nobox|18291|NOBOX oogenesis homeobox	NM_130869|Nobox|18291|NOBOX oogenesis homeobox
mm9_v1_chr5_-_136387191_136387399	0.742729	bHLH_family.p2	AK186358|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr18_-_84855007_84855083	0.742061	bHLH_family.p2	AB046738|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK003779|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK151013|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK172034|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK159739|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	BC005532|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	NM_023149|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK168029|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK168652|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)
mm9_v1_chr2_-_162486634_162486773	0.739997	bHLH_family.p2	AY026861|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	AY026862|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	AY026863|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr4_+_140703825_140703842	0.738508	bHLH_family.p2	NM_172518|Fbxo42|213499|F-box protein 42
mm9_v1_chr11_+_78075242_78075302	0.737182	bHLH_family.p2	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr7_+_51222120_51222137	0.737017	bHLH_family.p2	AK089370|Klk1b1|16623|kallikrein 1-related peptidase b1	BC026378|Klk1b1|16623|kallikrein 1-related peptidase b1	NM_010645|Klk1b1|16623|kallikrein 1-related peptidase b1
mm9_v1_chr3_-_94910786_94910815	0.736475	bHLH_family.p2	AK158062|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK098097|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK150898|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK151984|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr17_-_13898366_13898400	0.735563	bHLH_family.p2	AK012419|2700054A10Rik|72578|RIKEN cDNA 2700054A10 gene	AK005879|Tcte2|21646|t-complex-associated testis expressed 2	AK008572|Tcte2|21646|t-complex-associated testis expressed 2	BC049646|Tcte2|21646|t-complex-associated testis expressed 2	BC092528|Tcte2|21646|t-complex-associated testis expressed 2	NM_022311|Tcte2|21646|t-complex-associated testis expressed 2
mm9_v1_chr13_+_63402580_63402599	0.735272	bHLH_family.p2	AK081363|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	AK082032|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	BC027288|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene
mm9_v1_chr11_+_3189157_3189283	0.733442	bHLH_family.p2	AK018372|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	BC055947|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1
mm9_v1_chr2_+_125072955_125073018	0.732485	bHLH_family.p2	AK135438|Dut|110074|deoxyuridine triphosphatase	NM_001159646|Dut|110074|deoxyuridine triphosphatase	AK017216|Dut|110074|deoxyuridine triphosphatase	BC019979|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr1_-_186669499_186669729	0.732103	bHLH_family.p2	AK178160|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK180823|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	BC006888|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	BC042686|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK002874|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK051230|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK078650|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	NM_133684|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK017150|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2
mm9_v1_chr5_+_139729444_139729468	0.731862	bHLH_family.p2	NM_001163316|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	BC019557|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr2_-_5863788_5863851	0.731821	bHLH_family.p2	BC117994|Dhtkd1|209692|dehydrogenase E1 and transketolase domain containing 1	AK049272|Dhtkd1|209692|dehydrogenase E1 and transketolase domain containing 1	NM_001081131|Dhtkd1|209692|dehydrogenase E1 and transketolase domain containing 1
mm9_v1_chr3_-_101408495_101408631	0.731703	bHLH_family.p2	BC033435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC033471|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025811|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC021496|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025627|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC042435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025618|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	NM_144900|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK088000|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK137001|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159279|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159306|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC023794|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC032187|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide
mm9_v1_chr4_-_126145660_126145664	0.730962	bHLH_family.p2	BC129915|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	AB081471|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	BC129914|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1	NM_153403|Eif2c1|236511|eukaryotic translation initiation factor 2C, 1
mm9_v1_chr16_+_35938555_35938555	0.730462	bHLH_family.p2	BC070466|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	NM_030253|Parp9|80285|poly (ADP-ribose) polymerase family, member 9
mm9_v1_chr13_+_32894489_32894508	0.730325	bHLH_family.p2	BC058744|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr5_+_122872449_122872531	0.730282	bHLH_family.p2	NM_019805|Anapc7|56317|anaphase promoting complex subunit 7	AK164202|Anapc7|56317|anaphase promoting complex subunit 7	AF076607|Anapc7|56317|anaphase promoting complex subunit 7	AK030775|Anapc7|56317|anaphase promoting complex subunit 7	AK137286|Anapc7|56317|anaphase promoting complex subunit 7	AK150764|Anapc7|56317|anaphase promoting complex subunit 7	AK150891|Anapc7|56317|anaphase promoting complex subunit 7	AK153114|Anapc7|56317|anaphase promoting complex subunit 7	BC006635|Anapc7|56317|anaphase promoting complex subunit 7	AK049968|Anapc7|56317|anaphase promoting complex subunit 7	AK159523|Anapc7|56317|anaphase promoting complex subunit 7
mm9_v1_chr15_+_99239082_99239188	0.730002	bHLH_family.p2	AK039762|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK003483|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr13_-_45097365_45097527	0.729433	bHLH_family.p2	BC058574|Dtnbp1|94245|dystrobrevin binding protein 1	BC018350|Dtnbp1|94245|dystrobrevin binding protein 1	AJ404859|Dtnbp1|94245|dystrobrevin binding protein 1	AK150306|Dtnbp1|94245|dystrobrevin binding protein 1	NM_025772|Dtnbp1|94245|dystrobrevin binding protein 1	BC048682|Dtnbp1|94245|dystrobrevin binding protein 1
mm9_v1_chr17_+_57129686_57129814	0.728975	bHLH_family.p2	NM_017393|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK145765|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	BC001998|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AJ005253|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK004024|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK168053|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK002238|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK147719|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)
mm9_v1_chr11_-_78325602_78325669	0.728721	bHLH_family.p2	AK156856|Tmem199|195040|transmembrane protein 199	AK158039|Tmem199|195040|transmembrane protein 199	BC050977|Tmem199|195040|transmembrane protein 199	BC147070|Tmem199|195040|transmembrane protein 199	BC147071|Tmem199|195040|transmembrane protein 199	NM_199199|Tmem199|195040|transmembrane protein 199
mm9_v1_chr16_+_5233683_5233739	0.728647	bHLH_family.p2	AK145871|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)	NM_145362|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)	BC011281|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)
mm9_v1_chr10_-_79807963_79807985	0.728295	bHLH_family.p2	AK154947|Adamtsl5|66548|ADAMTS-like 5
mm9_v1_chr7_-_56136367_56136391	0.727739	bHLH_family.p2	AK154018|E2f8|108961|E2F transcription factor 8	AK157235|E2f8|108961|E2F transcription factor 8	AK160240|E2f8|108961|E2F transcription factor 8	AK172437|E2f8|108961|E2F transcription factor 8	AK049525|E2f8|108961|E2F transcription factor 8
mm9_v1_chr15_-_41700964_41701265	0.727579	bHLH_family.p2	AK138943|Abra|223513|actin-binding Rho activating protein	AK045186|Abra|223513|actin-binding Rho activating protein	AF504061|Abra|223513|actin-binding Rho activating protein	BC119198|Abra|223513|actin-binding Rho activating protein	BC120842|Abra|223513|actin-binding Rho activating protein	AK081696|Abra|223513|actin-binding Rho activating protein	NM_175456|Abra|223513|actin-binding Rho activating protein
mm9_v1_chr7_+_56044372_56044374	0.725465	bHLH_family.p2	AK010382|Zdhhc13|243983|zinc finger, DHHC domain containing 13	NM_028031|Zdhhc13|243983|zinc finger, DHHC domain containing 13
mm9_v1_chr18_+_34919205_34919226	0.725416	bHLH_family.p2	AK044469|Fam53c|66306|family with sequence similarity 53, member C	AK135712|Fam53c|66306|family with sequence similarity 53, member C	AK154214|Fam53c|66306|family with sequence similarity 53, member C	AK166841|Fam53c|66306|family with sequence similarity 53, member C	BC044896|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr15_-_75812322_75812428	0.724957	bHLH_family.p2	BC024536|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene	AK171003|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene	AK019123|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene	AK137409|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene
mm9_v1_chr19_+_56622750_56622913	0.72485	bHLH_family.p2	AK033384|Nhlrc2|66866|NHL repeat containing 2	NM_025811|Nhlrc2|66866|NHL repeat containing 2	BC095956|Nhlrc2|66866|NHL repeat containing 2	BC138190|Nhlrc2|66866|NHL repeat containing 2	BC138191|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr10_-_87819765_87819823	0.724793	bHLH_family.p2	AK004552|Dram1|71712|DNA-damage regulated autophagy modulator 1	NM_027878|Dram1|71712|DNA-damage regulated autophagy modulator 1
mm9_v1_chr6_-_85819124_85819161	0.724386	bHLH_family.p2	NM_053096|Cml2|93673|camello-like 2	BC039773|Cml2|93673|camello-like 2
mm9_v1_chr12_+_113858217_113858317	0.723486	bHLH_family.p2	AK146907|Adssl1|11565|adenylosuccinate synthetase like 1	NM_007421|Adssl1|11565|adenylosuccinate synthetase like 1	AK089520|Adssl1|11565|adenylosuccinate synthetase like 1	AK149634|Adssl1|11565|adenylosuccinate synthetase like 1	AK150874|Adssl1|11565|adenylosuccinate synthetase like 1	M74495|Adssl1|11565|adenylosuccinate synthetase like 1	BC039943|Adssl1|11565|adenylosuccinate synthetase like 1
mm9_v1_chr3_+_108167828_108167840	0.722635	bHLH_family.p2	AK004148|Mybphl|68753|myosin binding protein H-like	NM_026831|Mybphl|68753|myosin binding protein H-like	BC132636|Mybphl|68753|myosin binding protein H-like	BC132638|Mybphl|68753|myosin binding protein H-like	BC089625|Mybphl|68753|myosin binding protein H-like
mm9_v1_chr8_-_114154217_114154279	0.722003	bHLH_family.p2	BC039155|Ldhd|52815|lactate dehydrogenase D	AY092768|Ldhd|52815|lactate dehydrogenase D	BC055443|Ldhd|52815|lactate dehydrogenase D	NM_027570|Ldhd|52815|lactate dehydrogenase D	AK029820|Ldhd|52815|lactate dehydrogenase D	AK014649|Ldhd|52815|lactate dehydrogenase D
mm9_v1_chr6_+_28373521_28373688	0.72088	bHLH_family.p2	BC132452|Arf5|11844|ADP-ribosylation factor 5	BC138756|Arf5|11844|ADP-ribosylation factor 5	D87902|Arf5|11844|ADP-ribosylation factor 5	NM_007480|Arf5|11844|ADP-ribosylation factor 5
mm9_v1_chr11_-_54846882_54846976	0.720156	bHLH_family.p2	AK161625|Anxa6|11749|annexin A6	AK010342|Anxa6|11749|annexin A6	BC005595|Anxa6|11749|annexin A6	AK077843|Anxa6|11749|annexin A6	AK013026|Anxa6|11749|annexin A6	AK030728|Anxa6|11749|annexin A6	AK150035|Anxa6|11749|annexin A6	AK203372|Anxa6|11749|annexin A6	AK179628|Anxa6|11749|annexin A6	AK147066|Anxa6|11749|annexin A6	AK160754|Anxa6|11749|annexin A6	AK146509|Anxa6|11749|annexin A6	AK146592|Anxa6|11749|annexin A6	AK154101|Anxa6|11749|annexin A6	AK087941|Anxa6|11749|annexin A6	AK169774|Anxa6|11749|annexin A6	NM_001110211|Anxa6|11749|annexin A6	NM_013472|Anxa6|11749|annexin A6
mm9_v1_chr12_+_56404272_56404278	0.719917	bHLH_family.p2	AK172942|1110008L16Rik|66132|RIKEN cDNA 1110008L16 gene
mm9_v1_chr4_-_59451429_59451504	0.71949	bHLH_family.p2	BC157977|Susd1|634731|sushi domain containing 1	BC158124|Susd1|634731|sushi domain containing 1	NM_001163288|Susd1|634731|sushi domain containing 1
mm9_v1_chr13_-_73838142_73838227	0.719186	bHLH_family.p2	AK014544|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	AK028784|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	AK128923|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	NM_028878|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	BC107411|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	BC107412|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	AJ633679|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19	AB096860|Slc6a19|74338|solute carrier family 6 (neurotransmitter transporter), member 19
mm9_v1_chr15_+_101974978_101975063	0.718712	bHLH_family.p2	CT010184|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr10_-_77647837_77647908	0.718622	bHLH_family.p2	AB041855|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	BC112325|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	BC117903|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	BC128480|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	AK088254|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	AK088983|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	NM_029546|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)
mm9_v1_chr16_+_59471600_59471691	0.718341	bHLH_family.p2	NM_025910|Mina|67014|myc induced nuclear antigen	AK007810|Mina|67014|myc induced nuclear antigen	AK032595|Mina|67014|myc induced nuclear antigen	AK013451|Mina|67014|myc induced nuclear antigen	AK014426|Mina|67014|myc induced nuclear antigen	AK019117|Mina|67014|myc induced nuclear antigen	AK031671|Mina|67014|myc induced nuclear antigen	BC025109|Mina|67014|myc induced nuclear antigen	BC058242|Mina|67014|myc induced nuclear antigen
mm9_v1_chr1_+_55144949_55145013	0.716519	bHLH_family.p2	NM_008303|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr4_+_48676385_48676493	0.716507	bHLH_family.p2	BC089601|Murc|68016|muscle-related coiled-coil protein	NM_026509|Murc|68016|muscle-related coiled-coil protein	AK009073|Murc|68016|muscle-related coiled-coil protein	AK009691|Murc|68016|muscle-related coiled-coil protein	EU487254|Murc|68016|muscle-related coiled-coil protein
mm9_v1_chr10_-_120416369_120416397	0.715876	bHLH_family.p2	AF112300|Lemd3|380664|LEM domain containing 3	NM_001081193|Lemd3|380664|LEM domain containing 3
mm9_v1_chr6_+_120786207_120786296	0.715266	bHLH_family.p2	AK171256|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK148007|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK031018|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK088417|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK143457|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK132774|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK047223|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC029016|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	NM_153516|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK165068|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK168833|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr17_-_24987230_24987235	0.714033	bHLH_family.p2	BC026949|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chr4_-_136448748_136448871	0.713908	bHLH_family.p2	X66295|C1qc|12262|complement component 1, q subcomponent, C chain	BC069926|C1qc|12262|complement component 1, q subcomponent, C chain	BC054443|C1qc|12262|complement component 1, q subcomponent, C chain	BC075724|C1qc|12262|complement component 1, q subcomponent, C chain	BC043945|C1qc|12262|complement component 1, q subcomponent, C chain	AK138974|C1qc|12262|complement component 1, q subcomponent, C chain	NM_007574|C1qc|12262|complement component 1, q subcomponent, C chain
mm9_v1_chr11_-_86621074_86621127	0.713713	bHLH_family.p2	BC058276|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK135592|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK031000|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40	AK004610|Dhx40|67487|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm9_v1_chr10_+_105278511_105278556	0.71369	bHLH_family.p2	AK135550|Ccdc59|52713|coiled-coil domain containing 59	AK019970|Ccdc59|52713|coiled-coil domain containing 59	NM_025602|Ccdc59|52713|coiled-coil domain containing 59	BC027401|Ccdc59|52713|coiled-coil domain containing 59	AK012917|Ccdc59|52713|coiled-coil domain containing 59
mm9_v1_chr4_+_115511802_115511871	0.713285	bHLH_family.p2	AK141298|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK010697|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK169982|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	Y11091|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK155934|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	NM_021461|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	BC021369|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1
mm9_v1_chr1_-_71686889_71687012	0.713266	bHLH_family.p2	AK147249|Fn1|14268|fibronectin 1
mm9_v1_chr15_-_76062991_76063051	0.712748	bHLH_family.p2	AK044559|Plec|18810|plectin
mm9_v1_chr10_-_128258639_128258702	0.712358	bHLH_family.p2	AK002824|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK002583|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK013455|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	BC002146|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	NM_024180|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)
mm9_v1_chr4_+_140924106_140924134	0.71054	bHLH_family.p2	BC147048|Fam131c|277743|family with sequence similarity 131, member C	BC147049|Fam131c|277743|family with sequence similarity 131, member C	NM_001085513|Fam131c|277743|family with sequence similarity 131, member C
mm9_v1_chr7_-_29332272_29332272	0.708981	bHLH_family.p2	NM_001081115|Nccrp1|233038|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
mm9_v1_chr10_+_85484933_85484965	0.708665	bHLH_family.p2	AK150190|Fbxo7|69754|F-box protein 7	AK147907|Fbxo7|69754|F-box protein 7
mm9_v1_chr4_-_83132289_83132381	0.708451	bHLH_family.p2	BC043079|Psip1|101739|PC4 and SFRS1 interacting protein 1	NM_133948|Psip1|101739|PC4 and SFRS1 interacting protein 1	BC002104|Psip1|101739|PC4 and SFRS1 interacting protein 1	AK161426|Psip1|101739|PC4 and SFRS1 interacting protein 1	AK011572|Psip1|101739|PC4 and SFRS1 interacting protein 1	BC052177|Psip1|101739|PC4 and SFRS1 interacting protein 1
mm9_v1_chr4_-_147808800_147808920	0.707749	bHLH_family.p2	
mm9_v1_chr16_-_94008999_94009081	0.707155	bHLH_family.p2	BC132183|Cldn14|56173|claudin 14	BC138497|Cldn14|56173|claudin 14	AF314089|Cldn14|56173|claudin 14	NM_019500|Cldn14|56173|claudin 14
mm9_v1_chr11_+_78317000_78317014	0.706723	bHLH_family.p2	AK139838|Sebox|18292|SEBOX homeobox	AK143429|Sebox|18292|SEBOX homeobox	BC098184|Sebox|18292|SEBOX homeobox	NM_008759|Sebox|18292|SEBOX homeobox
mm9_v1_chr7_+_134920839_134920910	0.706393	bHLH_family.p2	NM_178029|Setd1a|233904|SET domain containing 1A
mm9_v1_chrX_+_132758579_132758588	0.704707	bHLH_family.p2	NM_001127169|Tceal7|100040972|transcription elongation factor A (SII)-like 7	AK003800|Tceal7|100040972|transcription elongation factor A (SII)-like 7
mm9_v1_chrX_-_165111764_165111833	0.704363	bHLH_family.p2	AK146208|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	BC010226|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	AK148898|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	AF117066|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	NM_010832|Msl3|17692|male-specific lethal 3 homolog (Drosophila)
mm9_v1_chr15_-_67008222_67008399	0.704088	bHLH_family.p2	AK078469|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	AK143207|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	BC023130|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	AK169958|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	AK086286|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	BC099670|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	AK031344|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	BC099693|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1	AK138747|St3gal1|20442|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm9_v1_chr10_+_77069322_77069457	0.703814	bHLH_family.p2	AK170896|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK171169|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)
mm9_v1_chr10_-_80729645_80729680	0.703607	bHLH_family.p2	AK009657|Mrpl54|66047|mitochondrial ribosomal protein L54	BC056985|Mrpl54|66047|mitochondrial ribosomal protein L54	AK002348|Mrpl54|66047|mitochondrial ribosomal protein L54	AK003225|Mrpl54|66047|mitochondrial ribosomal protein L54	NM_025317|Mrpl54|66047|mitochondrial ribosomal protein L54
mm9_v1_chr2_-_25210076_25210119	0.701957	bHLH_family.p2	AK209546|Dpp7|83768|dipeptidylpeptidase 7	AK206513|Dpp7|83768|dipeptidylpeptidase 7
mm9_v1_chr17_+_53706556_53706657	0.701766	bHLH_family.p2	AK132486|Kat2b|18519|K(lysine) acetyltransferase 2B	BC138195|Kat2b|18519|K(lysine) acetyltransferase 2B	BC145896|Kat2b|18519|K(lysine) acetyltransferase 2B	BC082581|Kat2b|18519|K(lysine) acetyltransferase 2B	AF254442|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr7_+_3655602_3655652	0.701304	bHLH_family.p2	AK081889|Rps9|76846|ribosomal protein S9	AK151621|Rps9|76846|ribosomal protein S9	AK050591|Rps9|76846|ribosomal protein S9	AK150988|Rps9|76846|ribosomal protein S9	NM_029767|Rps9|76846|ribosomal protein S9	AK151029|Rps9|76846|ribosomal protein S9	AK150800|Rps9|76846|ribosomal protein S9	BC031746|Rps9|76846|ribosomal protein S9
mm9_v1_chr11_+_48615792_48615849	0.701121	bHLH_family.p2	BC036295|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1
mm9_v1_chr1_-_186669744_186669758	0.699915	bHLH_family.p2	AK013440|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2
mm9_v1_chr10_+_74869770_74869778	0.699881	bHLH_family.p2	BC021388|Upb1|103149|ureidopropionase, beta	NM_133995|Upb1|103149|ureidopropionase, beta
mm9_v1_chr8_+_123640069_123640092	0.699654	bHLH_family.p2	AK076319|Foxc2|14234|forkhead box C2	AK146887|Foxc2|14234|forkhead box C2	NM_013519|Foxc2|14234|forkhead box C2	X74040|Foxc2|14234|forkhead box C2
mm9_v1_chr1_-_75475845_75475926	0.699591	bHLH_family.p2	BC071273|Chpf|74241|chondroitin polymerizing factor	BC057050|Chpf|74241|chondroitin polymerizing factor	BC060598|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr19_+_47929516_47929546	0.699496	bHLH_family.p2	AK146834|Gsto1|14873|glutathione S-transferase omega 1	AK168383|Gsto1|14873|glutathione S-transferase omega 1	AK027922|Gsto1|14873|glutathione S-transferase omega 1	BC085165|Gsto1|14873|glutathione S-transferase omega 1	AK204961|Gsto1|14873|glutathione S-transferase omega 1
mm9_v1_chr13_+_14722530_14722557	0.698723	bHLH_family.p2	AK030506|AW209491|105351|expressed sequence AW209491	AK050507|AW209491|105351|expressed sequence AW209491	AK077649|AW209491|105351|expressed sequence AW209491
mm9_v1_chr17_+_46783180_46783244	0.697344	bHLH_family.p2	NM_025302|Mrpl2|27398|mitochondrial ribosomal protein L2	AK007672|Mrpl2|27398|mitochondrial ribosomal protein L2	AK009521|Mrpl2|27398|mitochondrial ribosomal protein L2	BC027762|Mrpl2|27398|mitochondrial ribosomal protein L2
mm9_v1_chr12_+_3426820_3426856	0.697214	bHLH_family.p2	AK148015|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr9_-_20877907_20878057	0.697136	bHLH_family.p2	AK010211|Fdx1l|68165|ferredoxin 1-like	AK008401|Fdx1l|68165|ferredoxin 1-like	AK020979|Fdx1l|68165|ferredoxin 1-like	NM_001039824|Fdx1l|68165|ferredoxin 1-like	BC061189|Fdx1l|68165|ferredoxin 1-like	BC172154|Fdx1l|68165|ferredoxin 1-like
mm9_v1_chr6_+_29409404_29409478	0.696788	bHLH_family.p2	AK004264|Flnc|68794|filamin C, gamma	AF119148|Flnc|68794|filamin C, gamma
mm9_v1_chr15_+_76157893_76157894	0.696651	bHLH_family.p2	AK005101|Exosc4|109075|exosome component 4
mm9_v1_chr17_+_25716109_25716133	0.696506	bHLH_family.p2	NM_029624|Lmf1|76483|lipase maturation factor 1	AK169983|Lmf1|76483|lipase maturation factor 1	AK154622|Lmf1|76483|lipase maturation factor 1	AK035119|Lmf1|76483|lipase maturation factor 1	BC020104|Lmf1|76483|lipase maturation factor 1
mm9_v1_chr19_-_41459518_41459628	0.69596	bHLH_family.p2	BC113141|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AF293806|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	NM_031376|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK087295|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK154326|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK171021|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK170130|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK170925|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK089785|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1
mm9_v1_chr10_-_14438019_14438019	0.695856	bHLH_family.p2	AK018698|Gje1|76743|gap junction protein, epsilon 1	NM_029722|Gje1|76743|gap junction protein, epsilon 1
mm9_v1_chr4_-_129317873_129317883	0.695771	bHLH_family.p2	BC060227|Txlna|109658|taxilin alpha	BC065115|Txlna|109658|taxilin alpha	NM_001005506|Txlna|109658|taxilin alpha
mm9_v1_chr5_+_148000271_148000302	0.695752	bHLH_family.p2	NM_008178|Gsx1|14842|GS homeobox 1	U21224|Gsx1|14842|GS homeobox 1	BC137769|Gsx1|14842|GS homeobox 1
mm9_v1_chr5_-_31522802_31522840	0.695023	bHLH_family.p2	U42383|Ppm1g|14208|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
mm9_v1_chr16_+_90831052_90831391	0.69469	bHLH_family.p2	AK037486|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC132305|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC144751|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC157969|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC100350|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	NM_027627|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	AF358257|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene
mm9_v1_chr11_-_97490978_97491083	0.694676	bHLH_family.p2	AK087411|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	BC055770|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	NM_175332|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr1_-_14745828_14746072	0.694316	bHLH_family.p2	AB221639|Msc|17681|musculin	AF108216|Msc|17681|musculin	BC103594|Msc|17681|musculin	BC103592|Msc|17681|musculin	BC103593|Msc|17681|musculin	BC103623|Msc|17681|musculin	AF087035|Msc|17681|musculin	NM_010827|Msc|17681|musculin	AK138917|Msc|17681|musculin
mm9_v1_chr9_+_46091073_46091104	0.694182	bHLH_family.p2	AK038126|Bud13|215051|BUD13 homolog (yeast)	AK051047|Bud13|215051|BUD13 homolog (yeast)	AK077744|Bud13|215051|BUD13 homolog (yeast)	NM_146000|Bud13|215051|BUD13 homolog (yeast)	AK037134|Bud13|215051|BUD13 homolog (yeast)	BC025490|Bud13|215051|BUD13 homolog (yeast)
mm9_v1_chr11_-_120441643_120441696	0.693888	bHLH_family.p2	AK075656|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr11_-_103227984_103228190	0.693238	bHLH_family.p2	AK181665|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK216813|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK183705|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK048562|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm9_v1_chr11_-_116485513_116485568	0.69321	bHLH_family.p2	BC052182|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AK154639|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AK042365|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AK171085|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	NM_001167680|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AY167043|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)
mm9_v1_chr17_-_27076365_27076517	0.69307	bHLH_family.p2	AK007580|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK007912|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK145185|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC024422|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC028531|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026307|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003381|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026948|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003647|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK004197|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK159336|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK002828|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK012608|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr3_-_63768461_63768654	0.692546	bHLH_family.p2	AK144703|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK135092|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC063104|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK136323|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC054395|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	NM_015728|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1
mm9_v1_chr15_+_76157905_76157923	0.691453	bHLH_family.p2	AK144062|Exosc4|109075|exosome component 4
mm9_v1_chr1_-_164478628_164478690	0.691366	bHLH_family.p2	AK173044|Mettl13|71449|methyltransferase like 13	AK084750|Mettl13|71449|methyltransferase like 13	AK048636|Mettl13|71449|methyltransferase like 13	AK017470|Mettl13|71449|methyltransferase like 13	AK162843|Mettl13|71449|methyltransferase like 13	AK050492|Mettl13|71449|methyltransferase like 13	AK146751|Mettl13|71449|methyltransferase like 13	AK169319|Mettl13|71449|methyltransferase like 13	AK168959|Mettl13|71449|methyltransferase like 13
mm9_v1_chr10_-_114688480_114688548	0.690463	bHLH_family.p2	AK014477|Tbc1d15|66687|TBC1 domain family, member 15	AK078875|Tbc1d15|66687|TBC1 domain family, member 15	AK147085|Tbc1d15|66687|TBC1 domain family, member 15	BC053395|Tbc1d15|66687|TBC1 domain family, member 15	NM_025706|Tbc1d15|66687|TBC1 domain family, member 15
mm9_v1_chr5_+_21151760_21151873	0.690364	bHLH_family.p2	BC058573|Armc10|67211|armadillo repeat containing 10	AK011303|Armc10|67211|armadillo repeat containing 10	NM_026034|Armc10|67211|armadillo repeat containing 10	AK009821|Armc10|67211|armadillo repeat containing 10	AK012872|Armc10|67211|armadillo repeat containing 10	BC046281|Armc10|67211|armadillo repeat containing 10	BC038487|Armc10|67211|armadillo repeat containing 10	BC027343|Armc10|67211|armadillo repeat containing 10
mm9_v1_chr11_-_34108053_34108088	0.690278	bHLH_family.p2	BC007475|Foxi1|14233|forkhead box I1	AK019994|Foxi1|14233|forkhead box I1	NM_023907|Foxi1|14233|forkhead box I1
mm9_v1_chr7_-_70357361_70357454	0.690251	bHLH_family.p2	AY574266|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AF225980|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK157809|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	L37663|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	NM_007390|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK034208|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7
mm9_v1_chr18_+_35278585_35278617	0.689732	bHLH_family.p2	BC105576|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK004623|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr4_+_133036046_133036100	0.689559	bHLH_family.p2	AK137659|Fam46b|100342|family with sequence similarity 46, member B	NM_175307|Fam46b|100342|family with sequence similarity 46, member B	AK163215|Fam46b|100342|family with sequence similarity 46, member B	AK028944|Fam46b|100342|family with sequence similarity 46, member B	AK135706|Fam46b|100342|family with sequence similarity 46, member B	BC038001|Fam46b|100342|family with sequence similarity 46, member B
mm9_v1_chr1_+_40738476_40738556	0.687421	bHLH_family.p2	BC103685|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	BC104737|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	BC105676|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2	NM_001033289|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2
mm9_v1_chr5_+_137463234_137463356	0.687122	bHLH_family.p2	AK053320|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK013195|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK033360|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK157741|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm9_v1_chrX_+_103398594_103398687	0.686318	bHLH_family.p2	
mm9_v1_chr6_-_52168571_52168571	0.68628	bHLH_family.p2	NM_010455|Hoxa7|15404|homeobox A7
mm9_v1_chr1_-_59176583_59176664	0.685561	bHLH_family.p2	AK170118|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK167733|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001037812|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr8_+_86618736_86618846	0.685102	bHLH_family.p2	
mm9_v1_chr4_-_151412494_151412676	0.685011	bHLH_family.p2	AF301161|Tas1r1|110326|taste receptor, type 1, member 1	AF301162|Tas1r1|110326|taste receptor, type 1, member 1	AY032622|Tas1r1|110326|taste receptor, type 1, member 1	AK153579|Tas1r1|110326|taste receptor, type 1, member 1	BC070448|Tas1r1|110326|taste receptor, type 1, member 1	NM_031867|Tas1r1|110326|taste receptor, type 1, member 1	AF337040|Tas1r1|110326|taste receptor, type 1, member 1
mm9_v1_chr2_+_75497282_75497379	0.684833	bHLH_family.p2	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr19_+_10708722_10708782	0.684543	bHLH_family.p2	AK005010|Vwce|71768|von Willebrand factor C and EGF domains	NM_027913|Vwce|71768|von Willebrand factor C and EGF domains	BC030181|Vwce|71768|von Willebrand factor C and EGF domains	BC043473|Vwce|71768|von Willebrand factor C and EGF domains
mm9_v1_chr15_-_77759356_77759437	0.684361	bHLH_family.p2	AK167925|Txn2|56551|thioredoxin 2	U85089|Txn2|56551|thioredoxin 2	AK167754|Txn2|56551|thioredoxin 2	AK168322|Txn2|56551|thioredoxin 2	AK002358|Txn2|56551|thioredoxin 2	AK147164|Txn2|56551|thioredoxin 2	AK090199|Txn2|56551|thioredoxin 2	AK149855|Txn2|56551|thioredoxin 2	BC068182|Txn2|56551|thioredoxin 2	AK010917|Txn2|56551|thioredoxin 2	NM_019913|Txn2|56551|thioredoxin 2	AK160591|Txn2|56551|thioredoxin 2
mm9_v1_chr14_+_32454236_32454303	0.681462	bHLH_family.p2	NM_025295|Btd|26363|biotinidase	AK005506|Btd|26363|biotinidase	AK135375|Btd|26363|biotinidase	BC024051|Btd|26363|biotinidase
mm9_v1_chr4_-_129318200_129318260	0.681255	bHLH_family.p2	AK141252|Txlna|109658|taxilin alpha
mm9_v1_chr12_+_4599810_4599868	0.680777	bHLH_family.p2	AK034367|Itsn2|20403|intersectin 2	NM_001198968|Itsn2|20403|intersectin 2	NM_001198969|Itsn2|20403|intersectin 2	NM_011365|Itsn2|20403|intersectin 2	BC138262|Itsn2|20403|intersectin 2	BC171950|Itsn2|20403|intersectin 2	AK163807|Itsn2|20403|intersectin 2	AK042449|Itsn2|20403|intersectin 2	AK029325|Itsn2|20403|intersectin 2
mm9_v1_chr1_-_92866005_92866196	0.680682	bHLH_family.p2	BC013170|Rab17|19329|RAB17, member RAS oncogene family	BC051071|Rab17|19329|RAB17, member RAS oncogene family	AK075591|Rab17|19329|RAB17, member RAS oncogene family	NM_008998|Rab17|19329|RAB17, member RAS oncogene family
mm9_v1_chr15_-_81560309_81560370	0.680506	bHLH_family.p2	AK035571|Rangap1|19387|RAN GTPase activating protein 1	AK042930|Rangap1|19387|RAN GTPase activating protein 1	AK133905|Rangap1|19387|RAN GTPase activating protein 1	AK159525|Rangap1|19387|RAN GTPase activating protein 1	BC066213|Rangap1|19387|RAN GTPase activating protein 1	U08110|Rangap1|19387|RAN GTPase activating protein 1	NM_001146174|Rangap1|19387|RAN GTPase activating protein 1	NM_011241|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr12_+_85983504_85983504	0.68016	bHLH_family.p2	NM_001168588|Vrtn|432677|vertebrae development homolog (pig)
mm9_v1_chrX_+_71032347_71032381	0.676596	bHLH_family.p2	NM_001166480|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr10_+_42941354_42941567	0.676259	bHLH_family.p2	AK140091|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	BC147693|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	BC147694|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	BC147752|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	BC147753|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	AB210840|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2
mm9_v1_chr7_-_133343904_133344032	0.675414	bHLH_family.p2	BC058090|Xpo6|74204|exportin 6	NM_028816|Xpo6|74204|exportin 6	AK049009|Xpo6|74204|exportin 6	AK154709|Xpo6|74204|exportin 6
mm9_v1_chr11_-_4999029_4999066	0.673241	bHLH_family.p2	AK019460|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK150345|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK147909|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK153276|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK147103|Ewsr1|14030|Ewing sarcoma breakpoint region 1	BC068226|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK151625|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK034755|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK146791|Ewsr1|14030|Ewing sarcoma breakpoint region 1
mm9_v1_chr9_-_107888185_107888220	0.673069	bHLH_family.p2	BC115538|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK020090|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK076092|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene
mm9_v1_chr9_+_57351848_57351908	0.67081	bHLH_family.p2	BC083064|Rpp25|102614|ribonuclease P 25 subunit (human)	BC016085|Rpp25|102614|ribonuclease P 25 subunit (human)	NM_133982|Rpp25|102614|ribonuclease P 25 subunit (human)
mm9_v1_chr12_+_56404242_56404258	0.670219	bHLH_family.p2	AK031144|1110008L16Rik|66132|RIKEN cDNA 1110008L16 gene	AK045434|1110008L16Rik|66132|RIKEN cDNA 1110008L16 gene
mm9_v1_chr16_-_92466335_92466428	0.669511	bHLH_family.p2	AY325904|Rcan1|54720|regulator of calcineurin 1	AK146764|Rcan1|54720|regulator of calcineurin 1	NM_001081549|Rcan1|54720|regulator of calcineurin 1
mm9_v1_chr4_+_140703843_140703846	0.669143	bHLH_family.p2	AK170202|Fbxo42|213499|F-box protein 42	AK171215|Fbxo42|213499|F-box protein 42	BC058667|Fbxo42|213499|F-box protein 42	AK150804|Fbxo42|213499|F-box protein 42
mm9_v1_chr10_-_79896388_79896431	0.669072	bHLH_family.p2	AK170674|Tcf3|21423|transcription factor 3	NM_001164147|Tcf3|21423|transcription factor 3	NM_001164148|Tcf3|21423|transcription factor 3	NM_001164149|Tcf3|21423|transcription factor 3	NM_001164150|Tcf3|21423|transcription factor 3	NM_001164151|Tcf3|21423|transcription factor 3	NM_001164152|Tcf3|21423|transcription factor 3	NM_001164153|Tcf3|21423|transcription factor 3	NM_011548|Tcf3|21423|transcription factor 3	AK147735|Tcf3|21423|transcription factor 3
mm9_v1_chr19_-_44144244_44144286	0.669031	bHLH_family.p2	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr3_+_94641479_94641499	0.667351	bHLH_family.p2	NM_001165948|Pogz|229584|pogo transposable element with ZNF domain	NM_172683|Pogz|229584|pogo transposable element with ZNF domain	BC065134|Pogz|229584|pogo transposable element with ZNF domain	BC066108|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr17_-_47639222_47639245	0.666165	bHLH_family.p2	BC057895|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	BC023756|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AF222802|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK045108|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK049949|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK076486|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK086656|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK161658|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK162110|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	NM_022015|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq
mm9_v1_chr4_+_133074949_133074970	0.663435	bHLH_family.p2	BC006890|1810019J16Rik|69073|RIKEN cDNA 1810019J16 gene
mm9_v1_chr3_-_108525060_108525104	0.662717	bHLH_family.p2	AY081187|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)	AK040996|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)
mm9_v1_chr19_-_43749362_43749370	0.661755	bHLH_family.p2	BC025908|Slc25a28|246696|solute carrier family 25, member 28	NM_145156|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr5_+_139728268_139728480	0.661351	bHLH_family.p2	NM_026269|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	AK003551|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr15_+_81575472_81575548	0.660935	bHLH_family.p2	AK165492|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK147978|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK147484|Zc3h7b|20286|zinc finger CCCH type containing 7B	BC059923|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK171949|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr4_-_59927860_59927927	0.65879	bHLH_family.p2	BC140962|Slc46a2|30936|solute carrier family 46, member 2	AF148145|Slc46a2|30936|solute carrier family 46, member 2	AK014784|Slc46a2|30936|solute carrier family 46, member 2	AK017363|Slc46a2|30936|solute carrier family 46, member 2	AK040063|Slc46a2|30936|solute carrier family 46, member 2	NM_021053|Slc46a2|30936|solute carrier family 46, member 2
mm9_v1_chr15_-_99079369_99079394	0.658245	bHLH_family.p2	AK158611|Mcrs1|51812|microspherule protein 1
mm9_v1_chr6_+_6906000_6906017	0.656082	bHLH_family.p2	AK046436|Acn9|71238|ACN9 homolog (S. cerevisiae)	AK016986|Acn9|71238|ACN9 homolog (S. cerevisiae)	BC061217|Acn9|71238|ACN9 homolog (S. cerevisiae)	BC118928|Acn9|71238|ACN9 homolog (S. cerevisiae)	BC118927|Acn9|71238|ACN9 homolog (S. cerevisiae)	NM_001077713|Acn9|71238|ACN9 homolog (S. cerevisiae)
mm9_v1_chr1_+_135260407_135260421	0.655911	bHLH_family.p2	AK077179|Etnk2|214253|ethanolamine kinase 2
mm9_v1_chr11_+_70471347_70471375	0.655569	bHLH_family.p2	CT010193|Eno3|13808|enolase 3, beta muscle
mm9_v1_chr14_-_37935305_37935311	0.654853	bHLH_family.p2	
mm9_v1_chr5_-_65726802_65726885	0.654701	bHLH_family.p2	U07157|Rfc1|19687|replication factor C (activator 1) 1	X72711|Rfc1|19687|replication factor C (activator 1) 1	BC085174|Rfc1|19687|replication factor C (activator 1) 1	U01222|Rfc1|19687|replication factor C (activator 1) 1	U36441|Rfc1|19687|replication factor C (activator 1) 1	BC085173|Rfc1|19687|replication factor C (activator 1) 1	AK136937|Rfc1|19687|replication factor C (activator 1) 1	AK132028|Rfc1|19687|replication factor C (activator 1) 1	AK146164|Rfc1|19687|replication factor C (activator 1) 1	AK146314|Rfc1|19687|replication factor C (activator 1) 1	NM_011258|Rfc1|19687|replication factor C (activator 1) 1	U15037|Rfc1|19687|replication factor C (activator 1) 1
mm9_v1_chrX_-_156576312_156576363	0.654611	bHLH_family.p2	AK168152|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK169289|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK145718|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr7_+_127986324_127986492	0.653406	bHLH_family.p2	AK028524|Eef2k|13631|eukaryotic elongation factor-2 kinase	BC003433|Eef2k|13631|eukaryotic elongation factor-2 kinase	NM_007908|Eef2k|13631|eukaryotic elongation factor-2 kinase
mm9_v1_chr9_+_82723591_82723695	0.653206	bHLH_family.p2	AK076594|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK013036|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK045436|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	BC046301|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	BC061099|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AF093135|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK014712|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK020448|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr8_+_73222913_73223172	0.652488	bHLH_family.p2	X15358|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr7_+_30569807_30569808	0.650726	bHLH_family.p2	BC049120|Zfp30|22693|zinc finger protein 30	AY605122|Zfp30|22693|zinc finger protein 30	NM_013705|Zfp30|22693|zinc finger protein 30	Z30174|Zfp30|22693|zinc finger protein 30
mm9_v1_chr8_-_5105158_5105231	0.649233	bHLH_family.p2	D87059|Slc10a2|20494|solute carrier family 10, member 2	BC120703|Slc10a2|20494|solute carrier family 10, member 2	BC125290|Slc10a2|20494|solute carrier family 10, member 2	AB002693|Slc10a2|20494|solute carrier family 10, member 2	AY529655|Slc10a2|20494|solute carrier family 10, member 2	AY529656|Slc10a2|20494|solute carrier family 10, member 2	NM_011388|Slc10a2|20494|solute carrier family 10, member 2
mm9_v1_chr6_-_124807704_124807729	0.649114	bHLH_family.p2	AJ441086|Leprel2|14789|leprecan-like 2	AY463530|Leprel2|14789|leprecan-like 2	NM_013534|Leprel2|14789|leprecan-like 2
mm9_v1_chr18_-_60783946_60784004	0.648485	bHLH_family.p2	AK154958|Synpo|104027|synaptopodin	NM_177340|Synpo|104027|synaptopodin
mm9_v1_chrX_-_130516223_130516350	0.646928	bHLH_family.p2	AK030401|Sytl4|27359|synaptotagmin-like 4	AK161582|Sytl4|27359|synaptotagmin-like 4	AB025258|Sytl4|27359|synaptotagmin-like 4	AB025259|Sytl4|27359|synaptotagmin-like 4	NM_013757|Sytl4|27359|synaptotagmin-like 4	BC026819|Sytl4|27359|synaptotagmin-like 4
mm9_v1_chr9_+_118515769_118515921	0.646791	bHLH_family.p2	AJ344342|Itga9|104099|integrin alpha 9	NM_133721|Itga9|104099|integrin alpha 9	BC150824|Itga9|104099|integrin alpha 9
mm9_v1_chr5_-_36071698_36071756	0.646459	bHLH_family.p2	AK150064|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK159089|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK170396|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK170383|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1
mm9_v1_chr17_-_47825334_47825393	0.646173	bHLH_family.p2	BC021590|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	NM_001164729|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	NM_025365|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	BC089325|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)
mm9_v1_chr9_-_82868992_82869032	0.646006	bHLH_family.p2	AJ303103|Phip|83946|pleckstrin homology domain interacting protein	AB049460|Phip|83946|pleckstrin homology domain interacting protein	BC037036|Phip|83946|pleckstrin homology domain interacting protein	AK044935|Phip|83946|pleckstrin homology domain interacting protein	BC049950|Phip|83946|pleckstrin homology domain interacting protein	AK049736|Phip|83946|pleckstrin homology domain interacting protein	AK136530|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr13_+_55546808_55546869	0.644956	bHLH_family.p2	AK146119|Grk6|26385|G protein-coupled receptor kinase 6	AF040747|Grk6|26385|G protein-coupled receptor kinase 6	AF040748|Grk6|26385|G protein-coupled receptor kinase 6	AF040749|Grk6|26385|G protein-coupled receptor kinase 6	BC075719|Grk6|26385|G protein-coupled receptor kinase 6	Y15798|Grk6|26385|G protein-coupled receptor kinase 6	Y15799|Grk6|26385|G protein-coupled receptor kinase 6	Y15797|Grk6|26385|G protein-coupled receptor kinase 6	Y15800|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chr1_+_75432496_75432530	0.642987	bHLH_family.p2	NM_133708|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK007463|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr3_+_51028368_51028391	0.64174	bHLH_family.p2	AK087790|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	NM_009834|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF183960|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK149340|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr4_+_40917975_40918059	0.641723	bHLH_family.p2	NM_023739|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK144647|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK005038|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK050749|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK160013|Nfx1|74164|nuclear transcription factor, X-box binding 1	AF223576|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK146108|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK155387|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK033850|Nfx1|74164|nuclear transcription factor, X-box binding 1	X80436|Nfx1|74164|nuclear transcription factor, X-box binding 1	BC053709|Nfx1|74164|nuclear transcription factor, X-box binding 1
mm9_v1_chr17_-_27772162_27772222	0.641449	bHLH_family.p2	BC089323|Rps10|67097|ribosomal protein S10	BC003853|Rps10|67097|ribosomal protein S10	BC019725|Rps10|67097|ribosomal protein S10	AK011065|Rps10|67097|ribosomal protein S10	AK145441|Rps10|67097|ribosomal protein S10	AK151703|Rps10|67097|ribosomal protein S10	AK157104|Rps10|67097|ribosomal protein S10	AK002558|Rps10|67097|ribosomal protein S10	AK008797|Rps10|67097|ribosomal protein S10	AK136533|Rps10|67097|ribosomal protein S10	AK150803|Rps10|67097|ribosomal protein S10	BC086919|Rps10|67097|ribosomal protein S10	AK020219|Rps10|67097|ribosomal protein S10	NM_025963|Rps10|67097|ribosomal protein S10
mm9_v1_chr11_-_99199267_99199279	0.641102	bHLH_family.p2	BC116672|Krt26|320864|keratin 26	AK132445|Krt26|320864|keratin 26	AK028682|Krt26|320864|keratin 26	AK162718|Krt26|320864|keratin 26	NM_001033397|Krt26|320864|keratin 26	AK028591|Krt26|320864|keratin 26
mm9_v1_chr2_-_30329737_30329744	0.640475	bHLH_family.p2	AK034055|Ier5l|72500|immediate early response 5-like
mm9_v1_chr3_-_92568947_92568988	0.640292	bHLH_family.p2	BC117062|Lce1h|67718|late cornified envelope 1H	BC119356|Lce1h|67718|late cornified envelope 1H	AK009424|Lce1h|67718|late cornified envelope 1H	AK010064|Lce1h|67718|late cornified envelope 1H	NM_026335|Lce1h|67718|late cornified envelope 1H
mm9_v1_chr9_+_57982471_57982471	0.638334	bHLH_family.p2	NM_001162479|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chrX_+_34335647_34335650	0.6378	bHLH_family.p2	AK012751|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK002283|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK017881|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK088730|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	X70847|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr10_+_26492282_26492396	0.637621	bHLH_family.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr3_+_135101248_135101271	0.637303	bHLH_family.p2	AK167138|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK003163|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK009276|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK009936|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr11_+_53583927_53584130	0.635771	bHLH_family.p2	NM_001159396|Irf1|16362|interferon regulatory factor 1	BC003821|Irf1|16362|interferon regulatory factor 1
mm9_v1_chr19_+_6984613_6984666	0.635728	bHLH_family.p2	AK002791|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)	AK003292|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)	BC019418|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
mm9_v1_chr17_+_56396215_56396281	0.635351	bHLH_family.p2	NM_010192|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK129000|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK147879|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK155363|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK034412|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK080978|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC054382|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC009161|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK005041|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC110669|Fem1a|14154|feminization 1 homolog a (C. elegans)
mm9_v1_chr7_-_49761044_49761126	0.634752	bHLH_family.p2	BC063263|Zfp141|434178|zinc finger protein 141
mm9_v1_chr14_-_73109722_73109912	0.63305	bHLH_family.p2	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr15_-_27560282_27560465	0.632676	bHLH_family.p2	AK134955|Fam105b|432940|family with sequence similarity 105, member B	AK150371|Fam105b|432940|family with sequence similarity 105, member B	NM_001013792|Fam105b|432940|family with sequence similarity 105, member B
mm9_v1_chrX_-_58146562_58146604	0.632302	bHLH_family.p2	BC096018|Sox3|20675|SRY-box containing gene 3	BC063061|Sox3|20675|SRY-box containing gene 3	BC052024|Sox3|20675|SRY-box containing gene 3	NM_009237|Sox3|20675|SRY-box containing gene 3
mm9_v1_chr4_+_114761644_114761734	0.632255	bHLH_family.p2	BC013542|Pdzk1ip1|67182|PDZK1 interacting protein 1	AB009296|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr5_+_141083273_141083363	0.630627	bHLH_family.p2	BC138600|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC138601|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004642|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK153283|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_008494|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94351|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr16_+_22009607_22009725	0.630509	bHLH_family.p2	AY188288|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr3_+_40439675_40439741	0.629615	bHLH_family.p2	NM_175515|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	AK035092|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC125523|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC132387|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)
mm9_v1_chr4_-_149072755_149072816	0.629436	bHLH_family.p2	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr3_+_88130348_88130443	0.62926	bHLH_family.p2	AK186454|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK219800|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene
mm9_v1_chr7_+_25155279_25155362	0.628485	bHLH_family.p2	AK010943|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	NM_001163510|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	NM_008433|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	AK155910|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	BC010274|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm9_v1_chr6_-_3444484_3444497	0.62817	bHLH_family.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr4_-_131604821_131605088	0.626975	bHLH_family.p2	BC079875|Epb4.1|269587|erythrocyte protein band 4.1	AK220462|Epb4.1|269587|erythrocyte protein band 4.1	NM_001128606|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr19_+_43764302_43764323	0.626577	bHLH_family.p2	AK007446|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	AK147401|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	AK081564|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr1_-_60154721_60154750	0.626248	bHLH_family.p2	BC052386|Wdr12|57750|WD repeat domain 12	NM_021312|Wdr12|57750|WD repeat domain 12
mm9_v1_chr14_+_55045740_55045780	0.626206	bHLH_family.p2	AK004194|Mrpl52|68836|mitochondrial ribosomal protein L52	NM_026851|Mrpl52|68836|mitochondrial ribosomal protein L52	AK150806|Mrpl52|68836|mitochondrial ribosomal protein L52	AK151615|Mrpl52|68836|mitochondrial ribosomal protein L52	AK164629|Mrpl52|68836|mitochondrial ribosomal protein L52	AK081551|Mrpl52|68836|mitochondrial ribosomal protein L52	BC028522|Mrpl52|68836|mitochondrial ribosomal protein L52	AK152876|Mrpl52|68836|mitochondrial ribosomal protein L52
mm9_v1_chr17_+_73457324_73457400	0.625787	bHLH_family.p2	NM_001081071|Lclat1|225010|lysocardiolipin acyltransferase 1	NM_001177967|Lclat1|225010|lysocardiolipin acyltransferase 1	NM_001177968|Lclat1|225010|lysocardiolipin acyltransferase 1	AK144580|Lclat1|225010|lysocardiolipin acyltransferase 1	BC147499|Lclat1|225010|lysocardiolipin acyltransferase 1	BC150884|Lclat1|225010|lysocardiolipin acyltransferase 1	BC158076|Lclat1|225010|lysocardiolipin acyltransferase 1	BC158079|Lclat1|225010|lysocardiolipin acyltransferase 1
mm9_v1_chr11_-_59005394_59005458	0.625597	bHLH_family.p2	NM_008193|Guk1|14923|guanylate kinase 1
mm9_v1_chr10_-_14264800_14264841	0.625008	bHLH_family.p2	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr7_-_30954705_30954770	0.624761	bHLH_family.p2	AJ224763|Zfp146|26465|zinc finger protein 146	AK047696|Zfp146|26465|zinc finger protein 146	NM_011980|Zfp146|26465|zinc finger protein 146	AK037311|Zfp146|26465|zinc finger protein 146
mm9_v1_chr12_-_86097486_86097537	0.624524	bHLH_family.p2	
mm9_v1_chr15_-_102019373_102019395	0.623861	bHLH_family.p2	AY033912|Csad|246277|cysteine sulfinic acid decarboxylase	AK186014|Csad|246277|cysteine sulfinic acid decarboxylase
mm9_v1_chr2_+_71711274_71711402	0.623767	bHLH_family.p2	AK046805|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK153649|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	NM_172665|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK163553|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC027196|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK028017|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK085215|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC025480|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1
mm9_v1_chr6_+_136756729_136756803	0.62335	bHLH_family.p2	NM_177688|H2afj|232440|H2A histone family, member J	BC099606|H2afj|232440|H2A histone family, member J
mm9_v1_chr5_+_38668642_38668656	0.623317	bHLH_family.p2	AF548337|Otop1|21906|otopetrin 1	NM_172709|Otop1|21906|otopetrin 1	AK040792|Otop1|21906|otopetrin 1
mm9_v1_chr10_-_39706382_39706451	0.623023	bHLH_family.p2	BC021785|BC021785|215928|cDNA sequence BC021785	BC147384|BC021785|215928|cDNA sequence BC021785	BC147385|BC021785|215928|cDNA sequence BC021785	AK165453|BC021785|215928|cDNA sequence BC021785	AK165493|BC021785|215928|cDNA sequence BC021785	AK085266|BC021785|215928|cDNA sequence BC021785	NM_001001489|BC021785|215928|cDNA sequence BC021785	NM_001113385|BC021785|215928|cDNA sequence BC021785	NM_001113388|BC021785|215928|cDNA sequence BC021785
mm9_v1_chr1_+_135260428_135260557	0.622549	bHLH_family.p2	AY212244|Etnk2|214253|ethanolamine kinase 2
mm9_v1_chr15_-_81560302_81560307	0.622483	bHLH_family.p2	AK159930|Rangap1|19387|RAN GTPase activating protein 1	BC014855|Rangap1|19387|RAN GTPase activating protein 1	AK146670|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr7_-_4636519_4636597	0.622018	bHLH_family.p2	AK088469|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	AK013263|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	BC014758|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	NM_024172|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr12_+_110784600_110784655	0.621975	bHLH_family.p2	AK032021|Meg3|17263|maternally expressed 3	AK141629|Meg3|17263|maternally expressed 3
mm9_v1_chr8_-_87542451_87542752	0.621656	bHLH_family.p2	AK212827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK183718|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK193379|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK180403|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK205686|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK216431|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr1_-_30930715_30930760	0.621579	bHLH_family.p2	AK133490|Phf3|213109|PHD finger protein 3
mm9_v1_chr4_-_125998912_125998946	0.621517	bHLH_family.p2	AK147034|Adprhl2|100206|ADP-ribosylhydrolase like 2	BC023177|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK169070|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK143583|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK171780|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK149904|Adprhl2|100206|ADP-ribosylhydrolase like 2	AK150202|Adprhl2|100206|ADP-ribosylhydrolase like 2	AJ427296|Adprhl2|100206|ADP-ribosylhydrolase like 2	NM_133883|Adprhl2|100206|ADP-ribosylhydrolase like 2
mm9_v1_chr9_-_21889841_21889883	0.620909	bHLH_family.p2	BC004583|Ecsit|26940|ECSIT homolog (Drosophila)	AK007564|Ecsit|26940|ECSIT homolog (Drosophila)	AK012835|Ecsit|26940|ECSIT homolog (Drosophila)
mm9_v1_chr5_-_23218477_23218493	0.620893	bHLH_family.p2	AK089743|AI506816|433855|expressed sequence AI506816	AK157274|AI506816|433855|expressed sequence AI506816	AK161191|AI506816|433855|expressed sequence AI506816	AK088877|AI506816|433855|expressed sequence AI506816	AK151523|AI506816|433855|expressed sequence AI506816
mm9_v1_chr10_+_76727739_76727745	0.620513	bHLH_family.p2	AK206297|Pofut2|80294|protein O-fucosyltransferase 2
mm9_v1_chr1_+_63223396_63223420	0.620212	bHLH_family.p2	NM_018796|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr9_+_77602377_77602381	0.619618	bHLH_family.p2	AK169676|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr8_+_3676454_3676539	0.618622	bHLH_family.p2	AK076212|Trappc5|66682|trafficking protein particle complex 5	NM_025701|Trappc5|66682|trafficking protein particle complex 5	AK003633|Trappc5|66682|trafficking protein particle complex 5	AK007989|Trappc5|66682|trafficking protein particle complex 5	AK171833|Trappc5|66682|trafficking protein particle complex 5	AK078451|Trappc5|66682|trafficking protein particle complex 5	BC049179|Trappc5|66682|trafficking protein particle complex 5
mm9_v1_chr12_-_52930506_52930535	0.618058	bHLH_family.p2	AK172326|Hectd1|207304|HECT domain containing 1	NM_144788|Hectd1|207304|HECT domain containing 1
mm9_v1_chr9_+_30750127_30750147	0.617289	bHLH_family.p2	AF175282|Adamts8|30806|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8	NM_013906|Adamts8|30806|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8
mm9_v1_chr16_+_22009551_22009592	0.617189	bHLH_family.p2	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr11_+_61318645_61318683	0.616988	bHLH_family.p2	AK010355|B9d1|27078|B9 protein domain 1	AB030483|B9d1|27078|B9 protein domain 1	NM_013717|B9d1|27078|B9 protein domain 1	AK003038|B9d1|27078|B9 protein domain 1	AK131701|B9d1|27078|B9 protein domain 1
mm9_v1_chr13_-_58228398_58228433	0.615422	bHLH_family.p2	AK172180|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr10_+_79239973_79240019	0.615205	bHLH_family.p2	AK082898|Fstl3|83554|follistatin-like 3	BC061052|Fstl3|83554|follistatin-like 3	NM_031380|Fstl3|83554|follistatin-like 3
mm9_v1_chr2_+_28496752_28496773	0.614838	bHLH_family.p2	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chr5_+_23670780_23670845	0.613784	bHLH_family.p2	AK078478|Nupl2|231042|nucleoporin like 2	NM_153092|Nupl2|231042|nucleoporin like 2	AK077066|Nupl2|231042|nucleoporin like 2	BC033270|Nupl2|231042|nucleoporin like 2
mm9_v1_chr11_+_51781124_51781401	0.613764	bHLH_family.p2	NM_029976|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	AK020751|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	AB041653|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	BC116362|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	BC116363|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	AK150573|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	AK171740|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	AK077515|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like	BC099516|Cdkn2aipnl|52626|CDKN2A interacting protein N-terminal like
mm9_v1_chr3_+_54559503_54559503	0.613721	bHLH_family.p2	AK137411|Smad9|55994|MAD homolog 9 (Drosophila)	NM_019483|Smad9|55994|MAD homolog 9 (Drosophila)
mm9_v1_chr5_+_125956283_125956442	0.613349	bHLH_family.p2	AB054122|Aacs|78894|acetoacetyl-CoA synthetase	AK034184|Aacs|78894|acetoacetyl-CoA synthetase	AB056114|Aacs|78894|acetoacetyl-CoA synthetase	AK206715|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr5_-_35917699_35917718	0.612202	bHLH_family.p2	AK019101|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	BC152332|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	AK046957|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	AK132402|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene	NM_030208|2310079F23Rik|78890|RIKEN cDNA 2310079F23 gene
mm9_v1_chr9_+_55937980_55938002	0.612067	bHLH_family.p2	BC096761|Pstpip1|19200|proline-serine-threonine phosphatase-interacting protein 1
mm9_v1_chr3_+_87723411_87723427	0.611964	bHLH_family.p2	AK167623|Mrpl24|67707|mitochondrial ribosomal protein L24
mm9_v1_chr15_-_98608556_98608580	0.611378	bHLH_family.p2	BC114969|Wnt10b|22410|wingless related MMTV integration site 10b	AK029284|Wnt10b|22410|wingless related MMTV integration site 10b	NM_011718|Wnt10b|22410|wingless related MMTV integration site 10b	U30464|Wnt10b|22410|wingless related MMTV integration site 10b
mm9_v1_chr11_+_83664370_83664376	0.610597	bHLH_family.p2	AK004837|Hnf1b|21410|HNF1 homeobox B	NM_009330|Hnf1b|21410|HNF1 homeobox B
mm9_v1_chr3_+_109143558_109143678	0.608951	bHLH_family.p2	AK033253|Vav3|57257|vav 3 oncogene	NM_020505|Vav3|57257|vav 3 oncogene	AK041249|Vav3|57257|vav 3 oncogene
mm9_v1_chr1_+_16095854_16096053	0.608594	bHLH_family.p2	AF456767|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	AK149656|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	BC019796|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	NM_133832|Rdh10|98711|retinol dehydrogenase 10 (all-trans)
mm9_v1_chr8_-_108224931_108224989	0.60678	bHLH_family.p2	AK171345|Acd|497652|adrenocortical dysplasia	AK160599|Acd|497652|adrenocortical dysplasia	BC138694|Acd|497652|adrenocortical dysplasia	BC138695|Acd|497652|adrenocortical dysplasia	BC145384|Acd|497652|adrenocortical dysplasia	AK032683|Acd|497652|adrenocortical dysplasia	AK145959|Acd|497652|adrenocortical dysplasia	AK171458|Acd|497652|adrenocortical dysplasia	AK052768|Acd|497652|adrenocortical dysplasia
mm9_v1_chr5_+_66154740_66154759	0.606343	bHLH_family.p2	BC054549|N4bp2|333789|NEDD4 binding protein 2	NM_001024917|N4bp2|333789|NEDD4 binding protein 2
mm9_v1_chr6_-_99470949_99470986	0.60629	bHLH_family.p2	AB594192|Foxp1|108655|forkhead box P1
mm9_v1_chr9_-_13631482_13631562	0.605833	bHLH_family.p2	BC056968|Cep57|74360|centrosomal protein 57	AY251192|Cep57|74360|centrosomal protein 57	AK014873|Cep57|74360|centrosomal protein 57	BC030353|Cep57|74360|centrosomal protein 57	AK129053|Cep57|74360|centrosomal protein 57	NM_026665|Cep57|74360|centrosomal protein 57
mm9_v1_chr15_+_80085923_80086003	0.605779	bHLH_family.p2	AK146193|Atf4|11911|activating transcription factor 4	AK144777|Atf4|11911|activating transcription factor 4	AK155254|Atf4|11911|activating transcription factor 4	AK138657|Atf4|11911|activating transcription factor 4	AK150231|Atf4|11911|activating transcription factor 4	X61507|Atf4|11911|activating transcription factor 4	AK156298|Atf4|11911|activating transcription factor 4	M94087|Atf4|11911|activating transcription factor 4	BC031542|Atf4|11911|activating transcription factor 4	AK157839|Atf4|11911|activating transcription factor 4	AK195416|Atf4|11911|activating transcription factor 4
mm9_v1_chr1_-_75130450_75130463	0.605657	bHLH_family.p2	BC117790|Slc23a3|22626|solute carrier family 23 (nucleobase transporters), member 3	BC117791|Slc23a3|22626|solute carrier family 23 (nucleobase transporters), member 3	BC094893|Slc23a3|22626|solute carrier family 23 (nucleobase transporters), member 3	NM_194333|Slc23a3|22626|solute carrier family 23 (nucleobase transporters), member 3	U25739|Slc23a3|22626|solute carrier family 23 (nucleobase transporters), member 3
mm9_v1_chr4_+_40216581_40216623	0.604852	bHLH_family.p2	AK019894|2010003O02Rik|66434|RIKEN cDNA 2010003O02 gene	AK008077|2010003O02Rik|66434|RIKEN cDNA 2010003O02 gene
mm9_v1_chr9_+_77602337_77602341	0.604362	bHLH_family.p2	AK143228|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	AK144339|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr1_-_155033576_155033576	0.603106	bHLH_family.p2	AK147105|Lamc2|16782|laminin, gamma 2	NM_008485|Lamc2|16782|laminin, gamma 2
mm9_v1_chr7_+_130605807_130605885	0.602478	bHLH_family.p2	NM_001109045|Aqp8|11833|aquaporin 8	NM_007474|Aqp8|11833|aquaporin 8	AF018952|Aqp8|11833|aquaporin 8	BC010982|Aqp8|11833|aquaporin 8
mm9_v1_chr14_+_67853446_67853480	0.601999	bHLH_family.p2	BC050922|Ebf2|13592|early B-cell factor 2
mm9_v1_chr5_-_106887184_106887184	0.601481	bHLH_family.p2	AK053799|Barhl2|104382|BarH-like 2 (Drosophila)	NM_001005477|Barhl2|104382|BarH-like 2 (Drosophila)
mm9_v1_chr11_+_95995099_95995099	0.601463	bHLH_family.p2	AM690749|Ttll6|237930|tubulin tyrosine ligase-like family, member 6	NM_172799|Ttll6|237930|tubulin tyrosine ligase-like family, member 6
mm9_v1_chr10_-_75285264_75285287	0.600628	bHLH_family.p2	AK016340|Gstt4|75886|glutathione S-transferase, theta 4	BC052144|Gstt4|75886|glutathione S-transferase, theta 4	BC061011|Gstt4|75886|glutathione S-transferase, theta 4	NM_029472|Gstt4|75886|glutathione S-transferase, theta 4
mm9_v1_chr15_-_78403110_78403220	0.600618	bHLH_family.p2	X53247|Rac2|19354|RAS-related C3 botulinum substrate 2	BC005455|Rac2|19354|RAS-related C3 botulinum substrate 2	AK007561|Rac2|19354|RAS-related C3 botulinum substrate 2	AK088805|Rac2|19354|RAS-related C3 botulinum substrate 2	AK144136|Rac2|19354|RAS-related C3 botulinum substrate 2	AK088415|Rac2|19354|RAS-related C3 botulinum substrate 2	AK011045|Rac2|19354|RAS-related C3 botulinum substrate 2	AK171321|Rac2|19354|RAS-related C3 botulinum substrate 2	NM_009008|Rac2|19354|RAS-related C3 botulinum substrate 2
mm9_v1_chr15_-_82953160_82953169	0.599143	bHLH_family.p2	FJ687153|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	BC012523|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm9_v1_chr15_+_76157816_76157892	0.597676	bHLH_family.p2	AK089890|Exosc4|109075|exosome component 4	NM_175399|Exosc4|109075|exosome component 4	AK167629|Exosc4|109075|exosome component 4	AK083308|Exosc4|109075|exosome component 4	BC012277|Exosc4|109075|exosome component 4
mm9_v1_chr7_+_51565563_51565633	0.597672	bHLH_family.p2	NM_001034115|Shank1|243961|SH3/ankyrin domain gene 1
mm9_v1_chr16_+_18348274_18348287	0.597594	bHLH_family.p2	AK084886|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm9_v1_chrX_+_20447291_20447426	0.594367	bHLH_family.p2	NM_001044384|Timp1|21857|tissue inhibitor of metalloproteinase 1	NM_011593|Timp1|21857|tissue inhibitor of metalloproteinase 1	X04684|Timp1|21857|tissue inhibitor of metalloproteinase 1	BC008107|Timp1|21857|tissue inhibitor of metalloproteinase 1	BC034260|Timp1|21857|tissue inhibitor of metalloproteinase 1	BC051260|Timp1|21857|tissue inhibitor of metalloproteinase 1	M17243|Timp1|21857|tissue inhibitor of metalloproteinase 1
mm9_v1_chr17_+_17511271_17511295	0.593736	bHLH_family.p2	BC080771|Riok2|67045|RIO kinase 2 (yeast)	NM_025934|Riok2|67045|RIO kinase 2 (yeast)
mm9_v1_chr5_-_124875507_124875632	0.593473	bHLH_family.p2	BC021875|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	BC138418|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	BC106156|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK164542|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr8_-_95721702_95721738	0.590032	bHLH_family.p2	NM_053200|Ces1d|104158|carboxylesterase 1D
mm9_v1_chr13_+_91062764_91062789	0.58992	bHLH_family.p2	BC100603|Rps23|66475|ribosomal protein S23	AK002573|Rps23|66475|ribosomal protein S23	AK010594|Rps23|66475|ribosomal protein S23	AK012287|Rps23|66475|ribosomal protein S23	AK013720|Rps23|66475|ribosomal protein S23	AK088085|Rps23|66475|ribosomal protein S23	AK010608|Rps23|66475|ribosomal protein S23	AK050580|Rps23|66475|ribosomal protein S23	AK012574|Rps23|66475|ribosomal protein S23	AK012438|Rps23|66475|ribosomal protein S23	AK168587|Rps23|66475|ribosomal protein S23	NM_001100608|Gm15450|100038875|predicted gene 15450	BC002145|Rps23|66475|ribosomal protein S23	BC054435|Rps23|66475|ribosomal protein S23	BC078418|Rps23|66475|ribosomal protein S23
mm9_v1_chr13_-_54789548_54789560	0.589629	bHLH_family.p2	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr9_+_107457062_107457103	0.587191	bHLH_family.p2	AF132851|Rassf1|56289|Ras association (RalGDS/AF-6) domain family member 1
mm9_v1_chr9_-_37240759_37240759	0.586999	bHLH_family.p2	NM_001164767|Robo3|19649|roundabout homolog 3 (Drosophila)
mm9_v1_chr6_-_28211600_28211600	0.586109	bHLH_family.p2	BC119236|Zfp800|627049|zinc finger protein 800	BC119262|Zfp800|627049|zinc finger protein 800	BC144761|Zfp800|627049|zinc finger protein 800	NM_001081678|Zfp800|627049|zinc finger protein 800
mm9_v1_chr4_-_94269846_94269942	0.585753	bHLH_family.p2	BC139773|Plaa|18786|phospholipase A2, activating protein	AK075934|Plaa|18786|phospholipase A2, activating protein	BC139355|Plaa|18786|phospholipase A2, activating protein	BC139356|Plaa|18786|phospholipase A2, activating protein	NM_172695|Plaa|18786|phospholipase A2, activating protein	AK019070|Plaa|18786|phospholipase A2, activating protein
mm9_v1_chr16_+_58670444_58670490	0.585282	bHLH_family.p2	AK166512|Cpox|12892|coproporphyrinogen oxidase	BC017680|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr2_-_102026486_102026616	0.585148	bHLH_family.p2	AK032208|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	AK029683|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	NM_178886|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138178|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC145174|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138177|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3
mm9_v1_chr5_-_120922771_120922818	0.584275	bHLH_family.p2	BC022601|Sdsl|257635|serine dehydratase-like	NM_133902|Sdsl|257635|serine dehydratase-like	AF328927|Sdsl|257635|serine dehydratase-like
mm9_v1_chr9_+_46049140_46049166	0.583938	bHLH_family.p2	AK168687|Apoa4|11808|apolipoprotein A-IV	AK004856|Apoa4|11808|apolipoprotein A-IV	AK161535|Apoa4|11808|apolipoprotein A-IV	M64248|Apoa4|11808|apolipoprotein A-IV	M64249|Apoa4|11808|apolipoprotein A-IV	M64250|Apoa4|11808|apolipoprotein A-IV	BC010769|Apoa4|11808|apolipoprotein A-IV	BC050149|Apoa4|11808|apolipoprotein A-IV
mm9_v1_chr3_+_94778667_94778675	0.583695	bHLH_family.p2	AK028974|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm9_v1_chr8_+_129587894_129588193	0.583122	bHLH_family.p2	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr9_+_44205032_44205053	0.580216	bHLH_family.p2	AK147849|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr13_+_23646900_23646904	0.579999	bHLH_family.p2	AK155411|Hist1h1d|14957|histone cluster 1, H1d	NM_145713|Hist1h1d|14957|histone cluster 1, H1d	AK054269|Hist1h1d|14957|histone cluster 1, H1d	BC117045|Hist1h1d|14957|histone cluster 1, H1d	BC119173|Hist1h1d|14957|histone cluster 1, H1d
mm9_v1_chr7_-_52981176_52981185	0.579577	bHLH_family.p2	AK005760|Spaca4|69363|sperm acrosome associated 4	BC048608|Spaca4|69363|sperm acrosome associated 4	NM_027055|Spaca4|69363|sperm acrosome associated 4
mm9_v1_chr18_+_3507920_3507972	0.579564	bHLH_family.p2	AK011305|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK143185|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK164632|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK017303|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	NM_026505|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK045192|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AF153440|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	BC019378|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)
mm9_v1_chr13_+_22036962_22036998	0.579467	bHLH_family.p2	BC053084|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	NM_183014|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	AK036164|Zfp184|193452|zinc finger protein 184 (Kruppel-like)
mm9_v1_chr9_-_31088455_31088576	0.578852	bHLH_family.p2	AK029733|Gm8154|666539|predicted gene 8154
mm9_v1_chr11_+_60268143_60268162	0.578699	bHLH_family.p2	AK012988|Drg2|13495|developmentally regulated GTP binding protein 2	BC082564|Drg2|13495|developmentally regulated GTP binding protein 2
mm9_v1_chr4_+_137150067_137150162	0.578518	bHLH_family.p2	AK166158|Usp48|170707|ubiquitin specific peptidase 48	NM_130879|Usp48|170707|ubiquitin specific peptidase 48	AK220190|Usp48|170707|ubiquitin specific peptidase 48	BC021769|Usp48|170707|ubiquitin specific peptidase 48	AK052297|Usp48|170707|ubiquitin specific peptidase 48
mm9_v1_chr3_+_95363598_95363600	0.578427	bHLH_family.p2	AK016743|Hormad1|67981|HORMA domain containing 1	NM_026489|Hormad1|67981|HORMA domain containing 1	BC051129|Hormad1|67981|HORMA domain containing 1	AK014945|Hormad1|67981|HORMA domain containing 1	AK016324|Hormad1|67981|HORMA domain containing 1	AK163995|Hormad1|67981|HORMA domain containing 1	AY626343|Hormad1|67981|HORMA domain containing 1	AY634284|Hormad1|67981|HORMA domain containing 1
mm9_v1_chr10_-_79896330_79896385	0.578353	bHLH_family.p2	BC006860|Tcf3|21423|transcription factor 3	AK017617|Tcf3|21423|transcription factor 3	AK156265|Tcf3|21423|transcription factor 3	AK034777|Tcf3|21423|transcription factor 3	AK161009|Tcf3|21423|transcription factor 3	AK038738|Tcf3|21423|transcription factor 3
mm9_v1_chr15_+_58720783_58720964	0.577515	bHLH_family.p2	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr2_+_118214847_118214847	0.575909	bHLH_family.p2	BC072637|Eif2ak4|27103|eukaryotic translation initiation factor 2 alpha kinase 4	NM_001177806|Eif2ak4|27103|eukaryotic translation initiation factor 2 alpha kinase 4
mm9_v1_chr15_-_76059926_76059969	0.574213	bHLH_family.p2	AF188019|Plec|18810|plectin	AY480034|Plec|18810|plectin	NM_201385|Plec|18810|plectin
mm9_v1_chr19_+_45089665_45089708	0.573396	bHLH_family.p2	NM_145503|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK169936|Lzts2|226154|leucine zipper, putative tumor suppressor 2	BC092263|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK144154|Lzts2|226154|leucine zipper, putative tumor suppressor 2	NM_001130525|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chrX_-_34442878_34442893	0.573237	bHLH_family.p2	AK042690|Nkrf|77286|NF-kappaB repressing factor	NM_029891|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr7_-_52309439_52309541	0.573211	bHLH_family.p2	AK011086|Prrg2|65116|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm9_v1_chr11_-_82684245_82684245	0.570648	bHLH_family.p2	AK128983|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164570|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr13_-_64471609_64471618	0.568708	bHLH_family.p2	AK011589|Ctsl|13039|cathepsin L	AK147142|Ctsl|13039|cathepsin L	AK002221|Ctsl|13039|cathepsin L	AK049466|Ctsl|13039|cathepsin L	AK145051|Ctsl|13039|cathepsin L	AK150452|Ctsl|13039|cathepsin L	AK151169|Ctsl|13039|cathepsin L	AK153076|Ctsl|13039|cathepsin L	AK153417|Ctsl|13039|cathepsin L	AK159511|Ctsl|13039|cathepsin L	AK160100|Ctsl|13039|cathepsin L	AK161538|Ctsl|13039|cathepsin L	AK165397|Ctsl|13039|cathepsin L	AK169394|Ctsl|13039|cathepsin L	NM_009984|Ctsl|13039|cathepsin L	AK169712|Ctsl|13039|cathepsin L
mm9_v1_chr17_-_56896933_56896960	0.568682	bHLH_family.p2	BC057993|Nrtn|18188|neurturin	NM_008738|Nrtn|18188|neurturin	U78109|Nrtn|18188|neurturin
mm9_v1_chr12_+_89599244_89599334	0.568251	bHLH_family.p2	AK050868|Adck1|72113|aarF domain containing kinase 1	NM_028105|Adck1|72113|aarF domain containing kinase 1	AK044573|Adck1|72113|aarF domain containing kinase 1	BC010539|Adck1|72113|aarF domain containing kinase 1
mm9_v1_chr12_+_73542852_73542935	0.567388	bHLH_family.p2	AK029802|Lrrc9|78257|leucine rich repeat containing 9	NM_001142728|Lrrc9|78257|leucine rich repeat containing 9	NM_030070|Lrrc9|78257|leucine rich repeat containing 9	AK019545|Lrrc9|78257|leucine rich repeat containing 9	AK015292|Lrrc9|78257|leucine rich repeat containing 9
mm9_v1_chr15_+_85566122_85566257	0.565806	bHLH_family.p2	AK035676|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_011144|Ppara|19013|peroxisome proliferator activated receptor alpha	BC016892|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chrX_+_149574541_149574624	0.565802	bHLH_family.p2	BC069180|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr6_-_51962458_51962567	0.565733	bHLH_family.p2	AF051324|Skap2|54353|src family associated phosphoprotein 2	AB014485|Skap2|54353|src family associated phosphoprotein 2	AK144289|Skap2|54353|src family associated phosphoprotein 2	AK076000|Skap2|54353|src family associated phosphoprotein 2	AK172297|Skap2|54353|src family associated phosphoprotein 2	BC003711|Skap2|54353|src family associated phosphoprotein 2	NM_018773|Skap2|54353|src family associated phosphoprotein 2
mm9_v1_chr5_-_141306258_141306416	0.565307	bHLH_family.p2	BC111810|Gna12|14673|guanine nucleotide binding protein, alpha 12	M63659|Gna12|14673|guanine nucleotide binding protein, alpha 12	NM_010302|Gna12|14673|guanine nucleotide binding protein, alpha 12
mm9_v1_chr10_-_62188846_62188846	0.565206	bHLH_family.p2	BC137978|Stox1|216021|storkhead box 1	NM_001033260|Stox1|216021|storkhead box 1
mm9_v1_chr7_+_149719017_149719083	0.564909	bHLH_family.p2	NM_011288|Mrpl23|19935|mitochondrial ribosomal protein L23	AB049646|Mrpl23|19935|mitochondrial ribosomal protein L23	BC038626|Mrpl23|19935|mitochondrial ribosomal protein L23	AK086805|Mrpl23|19935|mitochondrial ribosomal protein L23	U84902|Mrpl23|19935|mitochondrial ribosomal protein L23	BC081460|Mrpl23|19935|mitochondrial ribosomal protein L23
mm9_v1_chr18_-_80397324_80397437	0.564898	bHLH_family.p2	BC064066|Rbfa|68731|ribosome binding factor A	NM_199197|Rbfa|68731|ribosome binding factor A	AK004019|Rbfa|68731|ribosome binding factor A	AK145807|Rbfa|68731|ribosome binding factor A
mm9_v1_chr2_-_118982663_118982690	0.564853	bHLH_family.p2	BC055754|Fam82a2|67809|family with sequence similarity 82, member A2	AK165302|Fam82a2|67809|family with sequence similarity 82, member A2	AK146299|Fam82a2|67809|family with sequence similarity 82, member A2	AK153369|Fam82a2|67809|family with sequence similarity 82, member A2	AK151090|Fam82a2|67809|family with sequence similarity 82, member A2	AK153322|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr6_-_52590325_52590367	0.564423	bHLH_family.p2	AB051067|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr5_+_109123455_109123520	0.563893	bHLH_family.p2	AF321300|Fgfrl1|116701|fibroblast growth factor receptor-like 1
mm9_v1_chr11_-_7113899_7113931	0.563505	bHLH_family.p2	BC031421|Igfbp3|16009|insulin-like growth factor binding protein 3	BC058261|Igfbp3|16009|insulin-like growth factor binding protein 3	NM_008343|Igfbp3|16009|insulin-like growth factor binding protein 3
mm9_v1_chr11_+_83560437_83560443	0.563408	bHLH_family.p2	NM_183249|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene
mm9_v1_chr14_-_63379948_63379993	0.562735	bHLH_family.p2	BC059263|Ints6|18130|integrator complex subunit 6	NM_008715|Ints6|18130|integrator complex subunit 6	BC058637|Ints6|18130|integrator complex subunit 6	AK053385|Ints6|18130|integrator complex subunit 6	AK149711|Ints6|18130|integrator complex subunit 6	AK172178|Ints6|18130|integrator complex subunit 6
mm9_v1_chr12_-_40763924_40763965	0.562043	bHLH_family.p2	BC029234|Arl4a|11861|ADP-ribosylation factor-like 4A	BC003725|Arl4a|11861|ADP-ribosylation factor-like 4A	AK168618|Arl4a|11861|ADP-ribosylation factor-like 4A	AK048606|Arl4a|11861|ADP-ribosylation factor-like 4A	AK137751|Arl4a|11861|ADP-ribosylation factor-like 4A	NM_007487|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr8_+_58419621_58419700	0.561664	bHLH_family.p2	NM_080438|Glra3|110304|glycine receptor, alpha 3 subunit	AY230204|Glra3|110304|glycine receptor, alpha 3 subunit	AF362764|Glra3|110304|glycine receptor, alpha 3 subunit
mm9_v1_chr15_-_88931527_88931637	0.561228	bHLH_family.p2	AK052293|Tubgcp6|328580|tubulin, gamma complex associated protein 6	BC023717|Tubgcp6|328580|tubulin, gamma complex associated protein 6
mm9_v1_chr10_+_111409750_111409849	0.560446	bHLH_family.p2	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr15_-_76038682_76038682	0.559775	bHLH_family.p2	AF188023|Plec|18810|plectin	AY480037|Plec|18810|plectin	NM_001164203|Plec|18810|plectin	NM_201388|Plec|18810|plectin
mm9_v1_chr10_-_60561763_60561769	0.559142	bHLH_family.p2	
mm9_v1_chr3_+_94641626_94641643	0.559104	bHLH_family.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr17_+_35390491_35390518	0.558062	bHLH_family.p2	AK196028|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm9_v1_chr11_+_83560497_83560515	0.557275	bHLH_family.p2	AK003352|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene	AK003164|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene	BC096415|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene
mm9_v1_chr10_+_127774778_127774839	0.557265	bHLH_family.p2	AK149990|Cs|12974|citrate synthase	AK010298|Cs|12974|citrate synthase
mm9_v1_chr3_+_135488454_135488592	0.557139	bHLH_family.p2	AK028215|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_026228|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	AK016853|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr9_-_116084154_116084277	0.556949	bHLH_family.p2	AF406755|Tgfbr2|21813|transforming growth factor, beta receptor II	S69114|Tgfbr2|21813|transforming growth factor, beta receptor II
mm9_v1_chr12_-_117190935_117191241	0.55421	bHLH_family.p2	U38853|Igh-VJ558|16061|immunoglobulin heavy chain (J558 family)	AF296431|Igh-VJ558|16061|immunoglobulin heavy chain (J558 family)	AF045497|Ighm|16019|immunoglobulin heavy constant mu
mm9_v1_chr4_-_84320900_84320905	0.554183	bHLH_family.p2	AK031440|Bnc2|242509|basonuclin 2
mm9_v1_chr9_+_118620809_118620817	0.553498	bHLH_family.p2	NM_001113514|Itga9|104099|integrin alpha 9	AK139690|Itga9|104099|integrin alpha 9
mm9_v1_chr4_+_149020903_149020988	0.553208	bHLH_family.p2	BC014747|Clstn1|65945|calsyntenin 1
mm9_v1_chr11_-_109583524_109583607	0.551173	bHLH_family.p2	BC029169|Fam20a|208659|family with sequence similarity 20, member A	NM_153782|Fam20a|208659|family with sequence similarity 20, member A	AK142932|Fam20a|208659|family with sequence similarity 20, member A
mm9_v1_chr2_+_83795612_83795648	0.550654	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr11_+_70783688_70783714	0.55018	bHLH_family.p2	BC047996|Rpain|69723|RPA interacting protein	NM_027186|Rpain|69723|RPA interacting protein
mm9_v1_chr5_+_100408033_100408079	0.549921	bHLH_family.p2	AK015886|4930524J08Rik|75129|RIKEN cDNA 4930524J08 gene
mm9_v1_chr2_-_6244125_6244167	0.549791	bHLH_family.p2	AK005972|1700014B07Rik|72248|RIKEN cDNA 1700014B07 gene
mm9_v1_chr8_+_55635683_55635717	0.549747	bHLH_family.p2	AK003770|Asb5|76294|ankyrin repeat and SOCs box-containing 5	NM_029569|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC120851|Asb5|76294|ankyrin repeat and SOCs box-containing 5	BC132007|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr11_-_63735652_63735808	0.549406	bHLH_family.p2	BC116733|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	BC116743|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AF168992|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK171996|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172015|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172271|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	NM_018805|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK085242|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
mm9_v1_chr8_-_87323958_87324038	0.549216	bHLH_family.p2	BC003766|Nfix|18032|nuclear factor I/X	Y07689|Nfix|18032|nuclear factor I/X
mm9_v1_chr11_-_106243873_106243954	0.548028	bHLH_family.p2	AK007801|Icam2|15896|intercellular adhesion molecule 2	BC039128|Icam2|15896|intercellular adhesion molecule 2	BC039970|Icam2|15896|intercellular adhesion molecule 2	NM_010494|Icam2|15896|intercellular adhesion molecule 2	X65493|Icam2|15896|intercellular adhesion molecule 2
mm9_v1_chr16_+_35939047_35939179	0.547947	bHLH_family.p2	BC010312|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	AK037903|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	AK050032|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	BC003281|Parp9|80285|poly (ADP-ribose) polymerase family, member 9
mm9_v1_chr9_-_14588941_14589004	0.547667	bHLH_family.p2	AK155932|Ankrd49|56503|ankyrin repeat domain 49	AK137504|Ankrd49|56503|ankyrin repeat domain 49	AK153923|Ankrd49|56503|ankyrin repeat domain 49	AK157315|Ankrd49|56503|ankyrin repeat domain 49	AK132850|Ankrd49|56503|ankyrin repeat domain 49	AF028722|Ankrd49|56503|ankyrin repeat domain 49
mm9_v1_chr9_+_102910816_102910949	0.547563	bHLH_family.p2	AK087350|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	AK169706|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	AK166724|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	NM_033314|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	BC035200|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	AF323958|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1
mm9_v1_chr9_+_57351830_57351839	0.546664	bHLH_family.p2	AK140177|Rpp25|102614|ribonuclease P 25 subunit (human)	AK082822|Rpp25|102614|ribonuclease P 25 subunit (human)
mm9_v1_chr4_+_129190824_129190856	0.544794	bHLH_family.p2	NM_010807|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr12_-_42212538_42212554	0.54417	bHLH_family.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr4_+_15885171_15885371	0.544164	bHLH_family.p2	AB016988|Nbn|27354|nibrin
mm9_v1_chrX_+_149574498_149574532	0.543987	bHLH_family.p2	NM_001004154|Rragb|245670|Ras-related GTP binding B	BC070407|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr5_-_23349880_23349980	0.543881	bHLH_family.p2	AK008581|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	AK003864|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	BC055352|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	NM_025394|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm9_v1_chr16_+_91406408_91406577	0.543515	bHLH_family.p2	AK160991|Il10rb|16155|interleukin 10 receptor, beta	BC145791|Il10rb|16155|interleukin 10 receptor, beta	NM_008349|Il10rb|16155|interleukin 10 receptor, beta	AK134042|Il10rb|16155|interleukin 10 receptor, beta	AF440787|Il10rb|16155|interleukin 10 receptor, beta	AK040938|Il10rb|16155|interleukin 10 receptor, beta	U53696|Il10rb|16155|interleukin 10 receptor, beta
mm9_v1_chr5_-_120953567_120953653	0.543506	bHLH_family.p2	AK030234|Plbd2|71772|phospholipase B domain containing 2	BC026395|Plbd2|71772|phospholipase B domain containing 2	BC038605|Plbd2|71772|phospholipase B domain containing 2	AF217003|Plbd2|71772|phospholipase B domain containing 2	BC060095|Plbd2|71772|phospholipase B domain containing 2	AK164220|Plbd2|71772|phospholipase B domain containing 2	AK170631|Plbd2|71772|phospholipase B domain containing 2	BC048826|Plbd2|71772|phospholipase B domain containing 2	AK043608|Plbd2|71772|phospholipase B domain containing 2	AK046937|Plbd2|71772|phospholipase B domain containing 2	AK150201|Plbd2|71772|phospholipase B domain containing 2	AK170387|Plbd2|71772|phospholipase B domain containing 2	AK032930|Plbd2|71772|phospholipase B domain containing 2	AK042089|Plbd2|71772|phospholipase B domain containing 2	AK029813|Plbd2|71772|phospholipase B domain containing 2	NM_023625|Plbd2|71772|phospholipase B domain containing 2	AK004973|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr11_-_100800603_100800824	0.543406	bHLH_family.p2	U06922|Stat3|20848|signal transducer and activator of transcription 3	AK145486|Stat3|20848|signal transducer and activator of transcription 3	U08378|Stat3|20848|signal transducer and activator of transcription 3	BC003806|Stat3|20848|signal transducer and activator of transcription 3	U30709|Stat3|20848|signal transducer and activator of transcription 3	BC019168|Stat3|20848|signal transducer and activator of transcription 3	AK153472|Stat3|20848|signal transducer and activator of transcription 3	AK153005|Stat3|20848|signal transducer and activator of transcription 3	L29278|Stat3|20848|signal transducer and activator of transcription 3	NM_011486|Stat3|20848|signal transducer and activator of transcription 3	NM_213659|Stat3|20848|signal transducer and activator of transcription 3	NM_213660|Stat3|20848|signal transducer and activator of transcription 3
mm9_v1_chr19_+_29596741_29596874	0.541908	bHLH_family.p2	NM_001081319|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	AK048394|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	AK156653|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	BC125448|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	BC132346|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene
mm9_v1_chr5_+_125956221_125956249	0.540875	bHLH_family.p2	AK019063|Aacs|78894|acetoacetyl-CoA synthetase	AK044017|Aacs|78894|acetoacetyl-CoA synthetase	AK147189|Aacs|78894|acetoacetyl-CoA synthetase	AK150266|Aacs|78894|acetoacetyl-CoA synthetase	AK165418|Aacs|78894|acetoacetyl-CoA synthetase	AK165457|Aacs|78894|acetoacetyl-CoA synthetase	AK170120|Aacs|78894|acetoacetyl-CoA synthetase	AK170653|Aacs|78894|acetoacetyl-CoA synthetase	AK170856|Aacs|78894|acetoacetyl-CoA synthetase	NM_030210|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr4_-_129419450_129419570	0.539813	bHLH_family.p2	BC002051|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17046|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK146815|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17961|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK150687|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK152084|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	NM_011317|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK044927|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK050520|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK137122|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1
mm9_v1_chr13_+_51942043_51942063	0.539708	bHLH_family.p2	NM_011817|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK002237|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK007410|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AB021884|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	BC001989|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AF055638|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma
mm9_v1_chr15_-_89256262_89256351	0.537794	bHLH_family.p2	AK029141|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle	AF017174|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle	NM_009948|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle	AK146851|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle
mm9_v1_chr5_-_31456576_31456630	0.537562	bHLH_family.p2	BC013452|Mpv17|17527|MpV17 mitochondrial inner membrane protein	AK040477|Mpv17|17527|MpV17 mitochondrial inner membrane protein	M36411|Mpv17|17527|MpV17 mitochondrial inner membrane protein	NM_008622|Mpv17|17527|MpV17 mitochondrial inner membrane protein
mm9_v1_chr9_-_57006034_57006159	0.537494	bHLH_family.p2	BC055798|Commd4|66199|COMM domain containing 4	AK172194|Commd4|66199|COMM domain containing 4	BC033438|Commd4|66199|COMM domain containing 4	BC037364|Commd4|66199|COMM domain containing 4	AK009802|Commd4|66199|COMM domain containing 4	BC049222|Commd4|66199|COMM domain containing 4	AK004174|Commd4|66199|COMM domain containing 4	NM_025417|Commd4|66199|COMM domain containing 4
mm9_v1_chr5_+_36807807_36807839	0.537308	bHLH_family.p2	AK161688|Grpel1|17713|GrpE-like 1, mitochondrial	AK048732|Grpel1|17713|GrpE-like 1, mitochondrial	NM_024478|Grpel1|17713|GrpE-like 1, mitochondrial	AK089113|Grpel1|17713|GrpE-like 1, mitochondrial	AK050445|Grpel1|17713|GrpE-like 1, mitochondrial
mm9_v1_chr5_+_137467443_137467452	0.536842	bHLH_family.p2	AK180845|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK217183|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm9_v1_chr5_-_115750913_115750938	0.53659	bHLH_family.p2	BC008106|Dynll1|56455|dynein light chain LC8-type 1	BC034258|Dynll1|56455|dynein light chain LC8-type 1	AF020185|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr5_+_144951154_144951196	0.535759	bHLH_family.p2	AF049660|Bhlha15|17341|basic helix-loop-helix family, member a15	NM_010800|Bhlha15|17341|basic helix-loop-helix family, member a15	BC094061|Bhlha15|17341|basic helix-loop-helix family, member a15	AK020643|Bhlha15|17341|basic helix-loop-helix family, member a15
mm9_v1_chr11_+_106137853_106138061	0.53491	bHLH_family.p2	AK076581|Tcam1|75870|testicular cell adhesion molecule 1	NM_029467|Tcam1|75870|testicular cell adhesion molecule 1	AK016263|Tcam1|75870|testicular cell adhesion molecule 1	BC050746|Tcam1|75870|testicular cell adhesion molecule 1
mm9_v1_chr17_-_13185014_13185022	0.533761	bHLH_family.p2	AK156334|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr7_+_134388053_134388144	0.533517	bHLH_family.p2	BC139048|Zfp771|244216|zinc finger protein 771	BC139049|Zfp771|244216|zinc finger protein 771	BC145524|Zfp771|244216|zinc finger protein 771
mm9_v1_chr1_+_89999782_89999852	0.533477	bHLH_family.p2	NM_201410|Ugt1a6b|394435|UDP glucuronosyltransferase 1 family, polypeptide A6B	BC026561|Ugt1a6b|394435|UDP glucuronosyltransferase 1 family, polypeptide A6B
mm9_v1_chr15_-_97923632_97923835	0.533371	bHLH_family.p2	AK028565|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK088597|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK138013|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK035581|Senp1|223870|SUMO1/sentrin specific peptidase 1	NM_144851|Senp1|223870|SUMO1/sentrin specific peptidase 1
mm9_v1_chr3_+_145812828_145812830	0.533047	bHLH_family.p2	AK150446|Mcoln2|68279|mucolipin 2	AK150547|Mcoln2|68279|mucolipin 2	AK152067|Mcoln2|68279|mucolipin 2	AK152943|Mcoln2|68279|mucolipin 2	AK153290|Mcoln2|68279|mucolipin 2
mm9_v1_chr13_+_32894609_32894767	0.532853	bHLH_family.p2	AF208046|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr5_+_130695613_130695613	0.530619	bHLH_family.p2	NM_001081394|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene
mm9_v1_chr2_+_164630599_164630613	0.530478	bHLH_family.p2	AK014904|Zswim3|67538|zinc finger, SWIM domain containing 3	BC023287|Zswim3|67538|zinc finger, SWIM domain containing 3	NM_178375|Zswim3|67538|zinc finger, SWIM domain containing 3
mm9_v1_chrX_+_20374922_20374939	0.530241	bHLH_family.p2	AK034861|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog
mm9_v1_chr6_-_38204008_38204008	0.529973	bHLH_family.p2	NM_194061|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr11_-_51076452_51076683	0.529507	bHLH_family.p2	AK076829|BC049762|193286|cDNA sequence BC049762	NM_177567|BC049762|193286|cDNA sequence BC049762	BC049762|BC049762|193286|cDNA sequence BC049762	AK154967|BC049762|193286|cDNA sequence BC049762
mm9_v1_chr2_-_173485027_173485050	0.528515	bHLH_family.p2	AK161459|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK005746|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK029171|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK170078|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK046224|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK164611|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene
mm9_v1_chr9_-_53418394_53418489	0.528024	bHLH_family.p2	AK146241|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK032097|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK075593|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024763|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024429|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AJ510150|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK169771|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK081715|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	NM_144784|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK163402|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1
mm9_v1_chr13_+_37437194_37437308	0.527434	bHLH_family.p2	AB007599|Ly86|17084|lymphocyte antigen 86	NM_010745|Ly86|17084|lymphocyte antigen 86	AK027929|Ly86|17084|lymphocyte antigen 86	BC096414|Ly86|17084|lymphocyte antigen 86	BC065783|Ly86|17084|lymphocyte antigen 86
mm9_v1_chr19_+_6226400_6226412	0.527308	bHLH_family.p2	AF260740|Gpha2|170458|glycoprotein hormone alpha 2	BC062804|Gpha2|170458|glycoprotein hormone alpha 2	NM_130453|Gpha2|170458|glycoprotein hormone alpha 2	BC132274|Gpha2|170458|glycoprotein hormone alpha 2	BC132562|Gpha2|170458|glycoprotein hormone alpha 2
mm9_v1_chr3_-_90269648_90269831	0.526482	bHLH_family.p2	BC139767|Npr1|18160|natriuretic peptide receptor 1	BC110659|Npr1|18160|natriuretic peptide receptor 1	NM_008727|Npr1|18160|natriuretic peptide receptor 1
mm9_v1_chr7_+_126669754_126669854	0.52625	bHLH_family.p2	AK050219|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK050404|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK050288|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK149591|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK050132|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	BC095985|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	NM_178758|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK050458|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK040650|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	AK080219|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5	BC061229|Acsm5|272428|acyl-CoA synthetase medium-chain family member 5
mm9_v1_chr5_+_121847967_121848031	0.525761	bHLH_family.p2	AK167405|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK167491|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK049325|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	NM_172722|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK149758|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC132172|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC138093|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK165175|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC055480|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK052060|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC082314|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC106182|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC037595|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm9_v1_chr13_+_76105186_76105207	0.525679	bHLH_family.p2	AK006554|Spata9|75571|spermatogenesis associated 9	NM_029343|Spata9|75571|spermatogenesis associated 9	AK016416|Spata9|75571|spermatogenesis associated 9	BC048558|Spata9|75571|spermatogenesis associated 9
mm9_v1_chr6_+_147424392_147424487	0.524262	bHLH_family.p2	AK007917|Ccdc91|67015|coiled-coil domain containing 91	NM_025911|Ccdc91|67015|coiled-coil domain containing 91	BC049073|Ccdc91|67015|coiled-coil domain containing 91	BC006734|Ccdc91|67015|coiled-coil domain containing 91
mm9_v1_chr7_+_116077911_116077933	0.524036	bHLH_family.p2	AK152037|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	NM_025344|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK002778|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK003372|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK088537|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK136797|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK010333|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr14_-_123312303_123312411	0.523769	bHLH_family.p2	BC080839|A2ld1|223267|AIG2-like domain 1	BC006662|A2ld1|223267|AIG2-like domain 1	AK050251|A2ld1|223267|AIG2-like domain 1	NM_145466|A2ld1|223267|AIG2-like domain 1
mm9_v1_chr17_+_34729396_34729495	0.523743	bHLH_family.p2	AF020198|Pbx2|18515|pre B-cell leukemia transcription factor 2	NM_017463|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC087615|Pbx2|18515|pre B-cell leukemia transcription factor 2	AK134357|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr16_+_20141134_20141212	0.523139	bHLH_family.p2	NM_001033237|Yeats2|208146|YEATS domain containing 2	NM_001145930|Yeats2|208146|YEATS domain containing 2	NM_001145931|Yeats2|208146|YEATS domain containing 2	AK165933|Yeats2|208146|YEATS domain containing 2	AK160791|Yeats2|208146|YEATS domain containing 2
mm9_v1_chr1_+_90303576_90303673	0.523132	bHLH_family.p2	AK002814|Spp2|75396|secreted phosphoprotein 2	NM_029269|Spp2|75396|secreted phosphoprotein 2	AJ315513|Spp2|75396|secreted phosphoprotein 2	BC027494|Spp2|75396|secreted phosphoprotein 2
mm9_v1_chr19_+_56471731_56471767	0.521776	bHLH_family.p2	AK154978|Casp7|12369|caspase 7	BC005428|Casp7|12369|caspase 7	D86353|Casp7|12369|caspase 7
mm9_v1_chr2_+_83824662_83824698	0.520957	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr2_+_83813042_83813078	0.520957	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr2_+_83807232_83807268	0.520957	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr2_+_83830472_83830508	0.520957	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr2_+_83801422_83801458	0.520957	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr2_+_83818852_83818888	0.520957	bHLH_family.p2	NM_001177418|Gm13698|668096|predicted gene 13698	NM_001177422|Gm13693|668100|predicted gene 13693	NM_001177424|Gm13696|668107|predicted gene 13696	NM_001177429|Gm13694|668113|predicted gene 13694	NM_001177430|Gm13697|668115|predicted gene 13697	NM_001177432|Gm13691|668119|predicted gene 13691	NM_001177434|Gm13695|545432|predicted gene 13695	AK139594|Gm13698|668096|predicted gene 13698
mm9_v1_chr8_-_124175827_124175832	0.520879	bHLH_family.p2	BC132449|Zcchc14|142682|zinc finger, CCHC domain containing 14	BC137853|Zcchc14|142682|zinc finger, CCHC domain containing 14	AB030244|Zcchc14|142682|zinc finger, CCHC domain containing 14	NM_080855|Zcchc14|142682|zinc finger, CCHC domain containing 14
mm9_v1_chr13_-_58712170_58712237	0.520874	bHLH_family.p2	AF305211|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC010472|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC013783|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	BC037061|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK052784|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK085680|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK145077|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK164740|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	AK164752|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	NM_022317|Slc28a3|114304|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
mm9_v1_chr11_+_78279202_78279242	0.519393	bHLH_family.p2	NM_026740|Slc46a1|52466|solute carrier family 46, member 1	AK170505|Slc46a1|52466|solute carrier family 46, member 1	BC057976|Slc46a1|52466|solute carrier family 46, member 1	AK003278|Slc46a1|52466|solute carrier family 46, member 1	AK220201|Slc46a1|52466|solute carrier family 46, member 1
mm9_v1_chr10_-_80664743_80664795	0.518062	bHLH_family.p2	BC119244|Itgb1bp3|69564|integrin beta 1 binding protein 3	BC119246|Itgb1bp3|69564|integrin beta 1 binding protein 3	AK137483|Itgb1bp3|69564|integrin beta 1 binding protein 3	NM_027120|Itgb1bp3|69564|integrin beta 1 binding protein 3	AK009352|Itgb1bp3|69564|integrin beta 1 binding protein 3
mm9_v1_chr7_+_146038066_146038078	0.517966	bHLH_family.p2	BC066022|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	NM_026391|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr3_+_94217197_94217322	0.517767	bHLH_family.p2	BC057030|Tdrkh|72634|tudor and KH domain containing protein	BC031886|Tdrkh|72634|tudor and KH domain containing protein	BC049363|Tdrkh|72634|tudor and KH domain containing protein	NM_028307|Tdrkh|72634|tudor and KH domain containing protein
mm9_v1_chr11_+_61318701_61318705	0.517581	bHLH_family.p2	BC008113|B9d1|27078|B9 protein domain 1
mm9_v1_chr15_-_75950624_75950768	0.517572	bHLH_family.p2	AY312170|Eppk1|223650|epiplakin 1	NM_144848|Eppk1|223650|epiplakin 1	BC090394|BC024139|271278|cDNA sequence BC024139
mm9_v1_chr13_-_41942856_41942989	0.517003	bHLH_family.p2	AK029025|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene	NM_175417|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene	AK079178|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene	AK135327|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene	NM_001145875|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene
mm9_v1_chr4_+_116180153_116180232	0.516949	bHLH_family.p2	AK131718|Ipp|16351|IAP promoted placental gene	NM_008389|Ipp|16351|IAP promoted placental gene
mm9_v1_chr12_-_85958287_85958415	0.516701	bHLH_family.p2	AJ001166|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	AK028420|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	BC050102|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	NM_008992|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4
mm9_v1_chr16_+_36071694_36071777	0.515658	bHLH_family.p2	AK144564|Ccdc58|381045|coiled-coil domain containing 58	NM_001159421|Ccdc58|381045|coiled-coil domain containing 58	NM_198645|Ccdc58|381045|coiled-coil domain containing 58	BC024862|Ccdc58|381045|coiled-coil domain containing 58
mm9_v1_chr4_-_132848450_132848516	0.515637	bHLH_family.p2	
mm9_v1_chr9_-_21936207_21936326	0.515425	bHLH_family.p2	BC012911|Acp5|11433|acid phosphatase 5, tartrate resistant	BC029644|Acp5|11433|acid phosphatase 5, tartrate resistant	BC019160|Acp5|11433|acid phosphatase 5, tartrate resistant	NM_001102404|Acp5|11433|acid phosphatase 5, tartrate resistant
mm9_v1_chr2_-_28418881_28418904	0.51484	bHLH_family.p2	NM_009885|Cel|12613|carboxyl ester lipase	U33169|Cel|12613|carboxyl ester lipase	U37386|Cel|12613|carboxyl ester lipase	BC006872|Cel|12613|carboxyl ester lipase	AK131818|Cel|12613|carboxyl ester lipase	AK131824|Cel|12613|carboxyl ester lipase	AK019028|Cel|12613|carboxyl ester lipase
mm9_v1_chr15_-_85864206_85864206	0.513963	bHLH_family.p2	AF031572|Celsr1|12614|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)	NM_009886|Celsr1|12614|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)
mm9_v1_chr1_-_145549758_145549813	0.513837	bHLH_family.p2	BC031127|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	NM_145991|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr6_-_125444695_125444710	0.513195	bHLH_family.p2	L08115|Cd9|12527|CD9 antigen
mm9_v1_chr9_+_20970150_20970317	0.511284	bHLH_family.p2	AK153657|Pde4a|18577|phosphodiesterase 4A, cAMP specific	NM_183408|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139405|Pde4a|18577|phosphodiesterase 4A, cAMP specific	BC139408|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr6_+_108733041_108733073	0.510384	bHLH_family.p2	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr5_+_103274265_103274294	0.509384	bHLH_family.p2	AK002660|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr2_-_118982691_118982711	0.508736	bHLH_family.p2	AK004786|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr9_+_21528037_21528221	0.508394	bHLH_family.p2	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr6_+_136756830_136756965	0.507877	bHLH_family.p2	AK053755|H2afj|232440|H2A histone family, member J
mm9_v1_chr19_+_6164434_6164457	0.507549	bHLH_family.p2	AK150133|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2	AK171828|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2	BC024521|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2	NM_028967|Batf2|74481|basic leucine zipper transcription factor, ATF-like 2
mm9_v1_chr11_+_70265405_70265432	0.507269	bHLH_family.p2	AK008153|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)	BC025057|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)	NM_025397|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)
mm9_v1_chr1_-_13364092_13364163	0.507244	bHLH_family.p2	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr9_+_110737091_110737094	0.506774	bHLH_family.p2	AF392062|Prss45|260408|protease, serine, 45	BC107230|Prss45|260408|protease, serine, 45	BC107231|Prss45|260408|protease, serine, 45	NM_153172|Prss45|260408|protease, serine, 45	AK077121|Prss45|260408|protease, serine, 45
mm9_v1_chr7_-_4636141_4636274	0.506088	bHLH_family.p2	AF338351|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr15_-_76983985_76984241	0.505084	bHLH_family.p2	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr11_-_60727237_60727316	0.502436	bHLH_family.p2	BC034332|Gm16515|24083|predicted gene, Gm16515	BC038816|Gm16515|24083|predicted gene, Gm16515	AK004720|Gm16515|24083|predicted gene, Gm16515	AK089179|Gm16515|24083|predicted gene, Gm16515	AK080453|Gm16515|24083|predicted gene, Gm16515	NM_025294|Gm16515|24083|predicted gene, Gm16515
mm9_v1_chr11_+_114530028_114530110	0.502225	bHLH_family.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr2_+_152512797_152512937	0.501761	bHLH_family.p2	AK010255|Mcts2|66405|malignant T cell amplified sequence 2	NM_025543|Mcts2|66405|malignant T cell amplified sequence 2	BC027507|Mcts2|66405|malignant T cell amplified sequence 2	AK002563|Mcts2|66405|malignant T cell amplified sequence 2	AK028001|Mcts2|66405|malignant T cell amplified sequence 2
mm9_v1_chr14_+_57506630_57506655	0.501757	bHLH_family.p2	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr7_+_52872975_52872999	0.501231	bHLH_family.p2	AK137638|Fut1|14343|fucosyltransferase 1	NM_008051|Fut1|14343|fucosyltransferase 1	BC109145|Fut1|14343|fucosyltransferase 1	BC109146|Fut1|14343|fucosyltransferase 1
mm9_v1_chr5_+_32438219_32438224	0.500858	bHLH_family.p2	AK089371|Fosl2|14284|fos-like antigen 2
mm9_v1_chr15_-_79158357_79158407	0.500339	bHLH_family.p2	BC057209|Pla2g6|53357|phospholipase A2, group VI	AK183678|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr11_-_94938114_94938131	0.500225	bHLH_family.p2	BC096741|Itga3|16400|integrin alpha 3
mm9_v1_chr2_+_167340686_167340879	0.49965	bHLH_family.p2	BC019989|Rnf114|81018|ring finger protein 114	AK216194|Rnf114|81018|ring finger protein 114	AK003584|Rnf114|81018|ring finger protein 114
mm9_v1_chr11_+_74584328_74584437	0.499191	bHLH_family.p2	AK013306|Mett10d|67493|methyltransferase 10 domain containing	BC022902|Mett10d|67493|methyltransferase 10 domain containing	AK145022|Mett10d|67493|methyltransferase 10 domain containing	AK011780|Mett10d|67493|methyltransferase 10 domain containing	AK012739|Mett10d|67493|methyltransferase 10 domain containing	NM_026197|Mett10d|67493|methyltransferase 10 domain containing	AK145662|Mett10d|67493|methyltransferase 10 domain containing	AK029045|Mett10d|67493|methyltransferase 10 domain containing	AK161574|Mett10d|67493|methyltransferase 10 domain containing	BC003467|Mett10d|67493|methyltransferase 10 domain containing	AK168798|Mett10d|67493|methyltransferase 10 domain containing	BC037452|Mett10d|67493|methyltransferase 10 domain containing	BC054724|Mett10d|67493|methyltransferase 10 domain containing	BC049897|Mett10d|67493|methyltransferase 10 domain containing
mm9_v1_chr11_-_51457826_51457921	0.499176	bHLH_family.p2	BC005767|N4bp3|212706|NEDD4 binding protein 3
mm9_v1_chr11_-_82684643_82684651	0.498065	bHLH_family.p2	AK150213|Rffl|67338|ring finger and FYVE like domain containing protein	AK169393|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr18_-_7004711_7004776	0.497991	bHLH_family.p2	BC137728|Mkx|210719|mohawk homeobox	AK034675|Mkx|210719|mohawk homeobox	NM_177595|Mkx|210719|mohawk homeobox
mm9_v1_chrX_+_165474542_165474656	0.497419	bHLH_family.p2	AK047827|Arhgap6|11856|Rho GTPase activating protein 6	NM_178754|Arhgap6|11856|Rho GTPase activating protein 6	AK077996|Arhgap6|11856|Rho GTPase activating protein 6	AK048507|Arhgap6|11856|Rho GTPase activating protein 6	AK048162|Arhgap6|11856|Rho GTPase activating protein 6	AK170575|Arhgap6|11856|Rho GTPase activating protein 6	AK079651|Arhgap6|11856|Rho GTPase activating protein 6	AK171337|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr8_-_108224992_108225001	0.497199	bHLH_family.p2	NM_001012638|Acd|497652|adrenocortical dysplasia	AK170606|Acd|497652|adrenocortical dysplasia
mm9_v1_chr17_+_15080188_15080199	0.496756	bHLH_family.p2	AK028052|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083880|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083881|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083882|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_026451|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr9_-_106587984_106588005	0.495936	bHLH_family.p2	AK009326|Tex264|21767|testis expressed gene 264	NM_011573|Tex264|21767|testis expressed gene 264	X80428|Tex264|21767|testis expressed gene 264
mm9_v1_chr3_+_145812796_145812808	0.49573	bHLH_family.p2	AK159172|Mcoln2|68279|mucolipin 2	NM_026656|Mcoln2|68279|mucolipin 2	AF503575|Mcoln2|68279|mucolipin 2
mm9_v1_chr10_+_75994327_75994402	0.495643	bHLH_family.p2	AK054393|Lss|16987|lanosterol synthase	AK141216|Lss|16987|lanosterol synthase	AK147680|Lss|16987|lanosterol synthase	AK154520|Lss|16987|lanosterol synthase	AK031271|Lss|16987|lanosterol synthase	AK044016|Lss|16987|lanosterol synthase	AK078023|Lss|16987|lanosterol synthase	BC029082|Lss|16987|lanosterol synthase	NM_146006|Lss|16987|lanosterol synthase
mm9_v1_chr7_-_133974985_133975009	0.495536	bHLH_family.p2	AK019625|4930451I11Rik|78118|RIKEN cDNA 4930451I11 gene	BC048622|4930451I11Rik|78118|RIKEN cDNA 4930451I11 gene	NM_183131|4930451I11Rik|78118|RIKEN cDNA 4930451I11 gene
mm9_v1_chr8_+_113618575_113618644	0.495447	bHLH_family.p2	AY223867|Pdpr|319518|pyruvate dehydrogenase phosphatase regulatory subunit	NM_198308|Pdpr|319518|pyruvate dehydrogenase phosphatase regulatory subunit
mm9_v1_chr11_+_43342241_43342329	0.495202	bHLH_family.p2	AK143205|Ccnjl|380694|cyclin J-like	NM_001045530|Ccnjl|380694|cyclin J-like
mm9_v1_chr2_-_155899631_155899762	0.494915	bHLH_family.p2	AK075784|Cpne1|266692|copine I
mm9_v1_chr11_-_77421308_77421363	0.494328	bHLH_family.p2	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chrX_+_70070774_70070776	0.492777	bHLH_family.p2	AF189260|Gabrq|57249|gamma-aminobutyric acid (GABA) A receptor, subunit theta	NM_020488|Gabrq|57249|gamma-aminobutyric acid (GABA) A receptor, subunit theta	BC119074|Gabrq|57249|gamma-aminobutyric acid (GABA) A receptor, subunit theta	BC119076|Gabrq|57249|gamma-aminobutyric acid (GABA) A receptor, subunit theta
mm9_v1_chrX_-_101176600_101176631	0.49265	bHLH_family.p2	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr11_+_79845841_79845980	0.492372	bHLH_family.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr2_+_164388211_164388224	0.490683	bHLH_family.p2	AK005519|Wfdc2|67701|WAP four-disulfide core domain 2	NM_026323|Wfdc2|67701|WAP four-disulfide core domain 2	AF334269|Wfdc2|67701|WAP four-disulfide core domain 2	BC099427|Wfdc2|67701|WAP four-disulfide core domain 2
mm9_v1_chr2_+_75670230_75670233	0.490613	bHLH_family.p2	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr18_+_62483857_62483914	0.490522	bHLH_family.p2	AK141625|Htr4|15562|5 hydroxytryptamine (serotonin) receptor 4	NM_008313|Htr4|15562|5 hydroxytryptamine (serotonin) receptor 4	AK141587|Htr4|15562|5 hydroxytryptamine (serotonin) receptor 4
mm9_v1_chr7_-_144602404_144602448	0.489252	bHLH_family.p2	AK020460|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	AK051763|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	AK078159|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	AK171836|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	NM_029886|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene
mm9_v1_chr17_-_25411224_25411258	0.489078	bHLH_family.p2	AK005058|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK088508|Ube2i|22196|ubiquitin-conjugating enzyme E2I	U94402|Ube2i|22196|ubiquitin-conjugating enzyme E2I	NM_011665|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr7_-_147174332_147174467	0.488977	bHLH_family.p2	AK134118|Adam8|11501|a disintegrin and metallopeptidase domain 8	AK151535|Adam8|11501|a disintegrin and metallopeptidase domain 8
mm9_v1_chr11_-_33413625_33413657	0.48746	bHLH_family.p2	AJ271458|Ranbp17|66011|RAN binding protein 17	AK046865|Ranbp17|66011|RAN binding protein 17	BC033503|Ranbp17|66011|RAN binding protein 17	AK035897|Ranbp17|66011|RAN binding protein 17	AK016583|Ranbp17|66011|RAN binding protein 17
mm9_v1_chr1_+_90031368_90031409	0.487196	bHLH_family.p2	NM_145079|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	U16818|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	AK162514|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	BC069940|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	BC012716|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A
mm9_v1_chr2_+_144194646_144194805	0.486342	bHLH_family.p2	NM_001164813|Pet117|100048644|cytochrome c oxidase assembly factor-like	BC033464|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_001166640|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	BC031563|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_181417|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein
mm9_v1_chr14_+_35124004_35124021	0.486198	bHLH_family.p2	AK075971|Glud1|14661|glutamate dehydrogenase 1	X57024|Glud1|14661|glutamate dehydrogenase 1	AK089152|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr10_-_128133261_128133372	0.486176	bHLH_family.p2	AK144551|Rab5b|19344|RAB5B, member RAS oncogene family	AK083034|Rab5b|19344|RAB5B, member RAS oncogene family	AK081251|Rab5b|19344|RAB5B, member RAS oncogene family	NM_177411|Rab5b|19344|RAB5B, member RAS oncogene family
mm9_v1_chr11_+_120358702_120358712	0.485558	bHLH_family.p2	
mm9_v1_chr6_-_52590285_52590317	0.484464	bHLH_family.p2	BC003914|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase	NM_145567|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr17_+_36016712_36016724	0.484425	bHLH_family.p2	NM_026987|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm9_v1_chr19_+_47654508_47654642	0.484009	bHLH_family.p2	AF039574|Slk|20874|STE20-like kinase (yeast)	NM_001164639|Slk|20874|STE20-like kinase (yeast)	NM_009289|Slk|20874|STE20-like kinase (yeast)	BC131674|Slk|20874|STE20-like kinase (yeast)	BC131675|Slk|20874|STE20-like kinase (yeast)	AF112855|Slk|20874|STE20-like kinase (yeast)	AK029491|Slk|20874|STE20-like kinase (yeast)
mm9_v1_chr6_+_70794501_70794578	0.483975	bHLH_family.p2	BC054809|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	NM_010121|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AF076681|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK010397|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK046355|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3
mm9_v1_chr13_-_34027824_34027832	0.483606	bHLH_family.p2	BC057950|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm9_v1_chr14_-_48188088_48188108	0.481668	bHLH_family.p2	AK029330|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK029967|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	BC090995|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK054196|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	NM_172599|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)
mm9_v1_chr8_+_113618490_113618567	0.481274	bHLH_family.p2	AK129472|Pdpr|319518|pyruvate dehydrogenase phosphatase regulatory subunit	AK029575|Pdpr|319518|pyruvate dehydrogenase phosphatase regulatory subunit
mm9_v1_chr9_+_106724228_106724306	0.480366	bHLH_family.p2	BC065119|Vprbp|321006|Vpr (HIV-1) binding protein	NM_001015507|Vprbp|321006|Vpr (HIV-1) binding protein
mm9_v1_chrX_+_70232662_70232703	0.480087	bHLH_family.p2	NM_001109043|Zfp185|22673|zinc finger protein 185	NM_009549|Zfp185|22673|zinc finger protein 185	AK048188|Zfp185|22673|zinc finger protein 185	EF494744|Zfp185|22673|zinc finger protein 185
mm9_v1_chr9_-_66880619_66880631	0.480081	bHLH_family.p2	AK190148|Tpm1|22003|tropomyosin 1, alpha	AK083087|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr1_+_192922288_192922292	0.478533	bHLH_family.p2	AK020278|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117083|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117085|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	NM_030060|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3
mm9_v1_chr10_-_117261663_117261731	0.477428	bHLH_family.p2	M79314|Rap1b|215449|RAS related protein 1b	BC147700|Rap1b|215449|RAS related protein 1b	BC147713|Rap1b|215449|RAS related protein 1b
mm9_v1_chr7_-_35070627_35070627	0.477376	bHLH_family.p2	AK076994|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene	NM_172741|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr4_+_11685294_11685306	0.476817	bHLH_family.p2	AK155633|Cdh17|12557|cadherin 17	NM_019753|Cdh17|12557|cadherin 17
mm9_v1_chr8_+_125372328_125372356	0.475763	bHLH_family.p2	BC157978|Cdh15|12555|cadherin 15
mm9_v1_chrX_+_98572571_98572682	0.474778	bHLH_family.p2	BC026833|Gjb1|14618|gap junction protein, beta 1	NM_008124|Gjb1|14618|gap junction protein, beta 1
mm9_v1_chrX_+_33652066_33652189	0.474166	bHLH_family.p2	AK154675|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK089984|Il13ra1|16164|interleukin 13 receptor, alpha 1	BC052425|Il13ra1|16164|interleukin 13 receptor, alpha 1	NM_133990|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK080147|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK143292|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK082889|Il13ra1|16164|interleukin 13 receptor, alpha 1	BC059939|Il13ra1|16164|interleukin 13 receptor, alpha 1
mm9_v1_chr18_+_40418014_40418040	0.473617	bHLH_family.p2	NM_026135|Kctd16|383348|potassium channel tetramerisation domain containing 16	AK220381|Kctd16|383348|potassium channel tetramerisation domain containing 16
mm9_v1_chr7_-_4116102_4116147	0.473553	bHLH_family.p2	AF102773|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5	AF164119|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5	BC006758|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5
mm9_v1_chrX_-_101017286_101017329	0.472452	bHLH_family.p2	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr17_-_32540518_32540561	0.472431	bHLH_family.p2	AK037914|Rasal3|320484|RAS protein activator like 3	NM_178785|Rasal3|320484|RAS protein activator like 3	AK030797|Rasal3|320484|RAS protein activator like 3	AK040040|Rasal3|320484|RAS protein activator like 3
mm9_v1_chr7_+_107641853_107641862	0.471238	bHLH_family.p2	NM_011671|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr4_-_148800321_148800361	0.471046	bHLH_family.p2	AK083409|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AK029914|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr17_-_80295336_80295462	0.470337	bHLH_family.p2	AK135988|Atl2|56298|atlastin GTPase 2	BC060501|Atl2|56298|atlastin GTPase 2	NM_019717|Atl2|56298|atlastin GTPase 2	AK038697|Atl2|56298|atlastin GTPase 2	AK043907|Atl2|56298|atlastin GTPase 2	AK008381|Atl2|56298|atlastin GTPase 2	NM_178050|Atl2|56298|atlastin GTPase 2
mm9_v1_chr4_+_135412028_135412060	0.469577	bHLH_family.p2	AK161097|Srsf10|14105|serine/arginine-rich splicing factor 10	AK168524|Srsf10|14105|serine/arginine-rich splicing factor 10	AK168558|Srsf10|14105|serine/arginine-rich splicing factor 10	AK135316|Srsf10|14105|serine/arginine-rich splicing factor 10	AK005295|Srsf10|14105|serine/arginine-rich splicing factor 10	BC006670|Srsf10|14105|serine/arginine-rich splicing factor 10	AK014345|Srsf10|14105|serine/arginine-rich splicing factor 10	AK151567|Srsf10|14105|serine/arginine-rich splicing factor 10	AF060490|Srsf10|14105|serine/arginine-rich splicing factor 10	AK150734|Srsf10|14105|serine/arginine-rich splicing factor 10	AK149716|Srsf10|14105|serine/arginine-rich splicing factor 10	AK150072|Srsf10|14105|serine/arginine-rich splicing factor 10
mm9_v1_chr5_+_139882322_139882418	0.46947	bHLH_family.p2	AK171460|C130050O18Rik|319772|RIKEN cDNA C130050O18 gene	NM_177000|C130050O18Rik|319772|RIKEN cDNA C130050O18 gene	AK155269|C130050O18Rik|319772|RIKEN cDNA C130050O18 gene	AK048344|C130050O18Rik|319772|RIKEN cDNA C130050O18 gene	AK086625|C130050O18Rik|319772|RIKEN cDNA C130050O18 gene	AK170398|C130050O18Rik|319772|RIKEN cDNA C130050O18 gene
mm9_v1_chr1_-_168168870_168168874	0.469336	bHLH_family.p2	AK077103|Mael|98558|maelstrom homolog (Drosophila)	AK165801|Mael|98558|maelstrom homolog (Drosophila)	BC050800|Mael|98558|maelstrom homolog (Drosophila)	NM_175296|Mael|98558|maelstrom homolog (Drosophila)
mm9_v1_chrX_-_99383709_99383709	0.469315	bHLH_family.p2	BC106152|Rps4x|20102|ribosomal protein S4, X-linked	M73436|Rps4x|20102|ribosomal protein S4, X-linked	NM_009094|Rps4x|20102|ribosomal protein S4, X-linked
mm9_v1_chr13_-_108948762_108948841	0.468897	bHLH_family.p2	AB183434|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AY262012|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC048512|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AK166492|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC116975|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC116977|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	BC144716|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AK007894|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	AK080810|B230220B15Rik|320723|RIKEN cDNA B230220B15 gene	NM_001127346|Ndufaf2|75597|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2
mm9_v1_chr16_+_88729106_88729106	0.4688	bHLH_family.p2	BC027551|Krtap13-1|268905|keratin associated protein 13-1	NM_183189|Krtap13-1|268905|keratin associated protein 13-1
mm9_v1_chr13_+_14722494_14722518	0.467822	bHLH_family.p2	AK169400|AW209491|105351|expressed sequence AW209491	NM_001104646|AW209491|105351|expressed sequence AW209491
mm9_v1_chr11_+_34934956_34934982	0.466609	bHLH_family.p2	NM_011412|Slit3|20564|slit homolog 3 (Drosophila)	AK147292|Slit3|20564|slit homolog 3 (Drosophila)	BC150780|Slit3|20564|slit homolog 3 (Drosophila)
mm9_v1_chr4_+_24900565_24900565	0.465265	bHLH_family.p2	AK036257|Gpr63|81006|G protein-coupled receptor 63	NM_030733|Gpr63|81006|G protein-coupled receptor 63
mm9_v1_chr5_-_3596298_3596546	0.465053	bHLH_family.p2	BC029549|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene	NM_172991|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene
mm9_v1_chr17_+_24864773_24864798	0.464368	bHLH_family.p2	NM_001163945|Rpl3l|66211|ribosomal protein L3-like
mm9_v1_chr11_+_94072732_94072796	0.464294	bHLH_family.p2	AK142667|Tob1|22057|transducer of ErbB-2.1	BC082588|Tob1|22057|transducer of ErbB-2.1	NM_009427|Tob1|22057|transducer of ErbB-2.1
mm9_v1_chr19_-_12869863_12869990	0.464243	bHLH_family.p2	AK147502|Zfp91|109910|zinc finger protein 91
mm9_v1_chr7_-_20506379_20506493	0.463836	bHLH_family.p2	AJ563420|Pvr|52118|poliovirus receptor	BC138219|Pvr|52118|poliovirus receptor	BC138220|Pvr|52118|poliovirus receptor	BC032283|Pvr|52118|poliovirus receptor	AB195430|Pvr|52118|poliovirus receptor	BC013673|Pvr|52118|poliovirus receptor	AK078344|Pvr|52118|poliovirus receptor	AK014446|Pvr|52118|poliovirus receptor	AK038747|Pvr|52118|poliovirus receptor	AK080753|Pvr|52118|poliovirus receptor	AK165873|Pvr|52118|poliovirus receptor	NM_027514|Pvr|52118|poliovirus receptor
mm9_v1_chr9_-_78290953_78291043	0.463238	bHLH_family.p2	BC052196|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	NM_173386|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK078662|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK054330|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK145268|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK154165|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145651|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145653|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK030292|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene
mm9_v1_chr7_-_26004848_26004855	0.462752	bHLH_family.p2	AK010701|Dedd2|67379|death effector domain-containing DNA binding protein 2
mm9_v1_chr11_-_72029093_72029093	0.462664	bHLH_family.p2	BC051929|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)	NM_026068|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm9_v1_chr3_+_89324085_89324085	0.462643	bHLH_family.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr9_+_98856025_98856025	0.462481	bHLH_family.p2	BC137811|Foxl2|26927|forkhead box L2	BC137812|Foxl2|26927|forkhead box L2	NM_012020|Foxl2|26927|forkhead box L2
mm9_v1_chr6_+_124462696_124462740	0.461295	bHLH_family.p2	BC004637|C1ra|50909|complement component 1, r subcomponent A	BC172078|C1ra|50909|complement component 1, r subcomponent A	AK138817|C1ra|50909|complement component 1, r subcomponent A
mm9_v1_chr5_+_13399492_13399661	0.458507	bHLH_family.p2	AK053115|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	BC057588|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr19_+_47929478_47929478	0.456835	bHLH_family.p2	NM_010362|Gsto1|14873|glutathione S-transferase omega 1	U80819|Gsto1|14873|glutathione S-transferase omega 1
mm9_v1_chr13_-_64471562_64471599	0.456739	bHLH_family.p2	AF121837|Ctsl|13039|cathepsin L	AF121838|Ctsl|13039|cathepsin L	AF121839|Ctsl|13039|cathepsin L	J02583|Ctsl|13039|cathepsin L	BC068163|Ctsl|13039|cathepsin L	X06086|Ctsl|13039|cathepsin L
mm9_v1_chr7_+_107641863_107641872	0.45657	bHLH_family.p2	AK054060|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK134116|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK142687|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK165245|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK035298|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK172307|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr6_+_83085799_83085880	0.456126	bHLH_family.p2	NM_001136227|Rtkn|20166|rhotekin	AK164943|Rtkn|20166|rhotekin	AK076155|Rtkn|20166|rhotekin
mm9_v1_chr10_-_62254978_62254996	0.455845	bHLH_family.p2	BC079652|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC010199|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr1_+_62749850_62750115	0.45573	bHLH_family.p2	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr4_+_129190872_129190875	0.454636	bHLH_family.p2	AK083913|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr15_+_38837818_38837834	0.453816	bHLH_family.p2	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr7_-_128125714_128125825	0.453733	bHLH_family.p2	BC117530|Cdr2|12585|cerebellar degeneration-related 2	BC118511|Cdr2|12585|cerebellar degeneration-related 2	AK171706|Cdr2|12585|cerebellar degeneration-related 2	U88588|Cdr2|12585|cerebellar degeneration-related 2	AK157902|Cdr2|12585|cerebellar degeneration-related 2	AK148057|Cdr2|12585|cerebellar degeneration-related 2	NM_007672|Cdr2|12585|cerebellar degeneration-related 2
mm9_v1_chr11_+_32355355_32355458	0.453256	bHLH_family.p2	AK076953|Ubtd2|327900|ubiquitin domain containing 2	BC057026|Ubtd2|327900|ubiquitin domain containing 2	NM_173784|Ubtd2|327900|ubiquitin domain containing 2
mm9_v1_chr8_+_59029896_59029998	0.452623	bHLH_family.p2	AK077595|Fbxo8|50753|F-box protein 8	AK078111|Fbxo8|50753|F-box protein 8	AK012401|Fbxo8|50753|F-box protein 8	AK147748|Fbxo8|50753|F-box protein 8	AK162592|Fbxo8|50753|F-box protein 8	AK002538|Fbxo8|50753|F-box protein 8	BC011100|Fbxo8|50753|F-box protein 8	AF176527|Fbxo8|50753|F-box protein 8	AK029989|Fbxo8|50753|F-box protein 8	NM_015791|Fbxo8|50753|F-box protein 8	AK160145|Fbxo8|50753|F-box protein 8	BC034854|Fbxo8|50753|F-box protein 8
mm9_v1_chr19_+_7568894_7569107	0.452577	bHLH_family.p2	NM_146091|Atl3|109168|atlastin GTPase 3	AK147720|Atl3|109168|atlastin GTPase 3	AK170550|Atl3|109168|atlastin GTPase 3	AK077752|Atl3|109168|atlastin GTPase 3	AK028842|Atl3|109168|atlastin GTPase 3	AK030660|Atl3|109168|atlastin GTPase 3	AK169476|Atl3|109168|atlastin GTPase 3	BC017138|Atl3|109168|atlastin GTPase 3	AK014617|Atl3|109168|atlastin GTPase 3
mm9_v1_chr1_+_87918516_87918535	0.45254	bHLH_family.p2	NM_001122732|Spata3|70060|spermatogenesis associated 3	NM_027029|Spata3|70060|spermatogenesis associated 3	NM_027300|Spata3|70060|spermatogenesis associated 3	NM_028647|Spata3|70060|spermatogenesis associated 3	BC048516|Spata3|70060|spermatogenesis associated 3	AF399971|Spata3|70060|spermatogenesis associated 3	AK005880|Spata3|70060|spermatogenesis associated 3	AK015193|Spata3|70060|spermatogenesis associated 3	AK131709|Spata3|70060|spermatogenesis associated 3	AK006491|Spata3|70060|spermatogenesis associated 3	EF546784|Spata3|70060|spermatogenesis associated 3	EU259321|Spata3|70060|spermatogenesis associated 3	BC061025|Spata3|70060|spermatogenesis associated 3
mm9_v1_chr5_+_35384200_35384209	0.452218	bHLH_family.p2	AB009294|Hgfac|54426|hepatocyte growth factor activator	NM_019447|Hgfac|54426|hepatocyte growth factor activator	AK007987|Hgfac|54426|hepatocyte growth factor activator	AK169989|Hgfac|54426|hepatocyte growth factor activator
mm9_v1_chr6_-_85819035_85819112	0.451045	bHLH_family.p2	AK050449|Cml2|93673|camello-like 2	AF163315|Cml2|93673|camello-like 2
mm9_v1_chr2_-_93174606_93174694	0.449574	bHLH_family.p2	BC052169|Tspan18|241556|tetraspanin 18	AK042573|Tspan18|241556|tetraspanin 18	NM_183180|Tspan18|241556|tetraspanin 18	AK011742|Tspan18|241556|tetraspanin 18
mm9_v1_chr5_-_3596078_3596116	0.449368	bHLH_family.p2	AK047811|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene	AK041876|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene
mm9_v1_chrX_+_70962097_70962112	0.448453	bHLH_family.p2	BC011273|Abcd1|11666|ATP-binding cassette, sub-family D (ALD), member 1
mm9_v1_chr2_+_26442112_26442158	0.448399	bHLH_family.p2	NM_001164564|Egfl7|353156|EGF-like domain 7	AK139377|Egfl7|353156|EGF-like domain 7
mm9_v1_chr16_-_11134587_11134761	0.447967	bHLH_family.p2	AK157288|Txndc11|106200|thioredoxin domain containing 11	BC029643|Txndc11|106200|thioredoxin domain containing 11	NM_029582|Txndc11|106200|thioredoxin domain containing 11	AK156154|Txndc11|106200|thioredoxin domain containing 11	AK170352|Txndc11|106200|thioredoxin domain containing 11	AK013044|Txndc11|106200|thioredoxin domain containing 11	AK155844|Txndc11|106200|thioredoxin domain containing 11	AK159484|Txndc11|106200|thioredoxin domain containing 11	BC020363|Txndc11|106200|thioredoxin domain containing 11	AK139620|Txndc11|106200|thioredoxin domain containing 11	AK157948|Txndc11|106200|thioredoxin domain containing 11	AK156590|Txndc11|106200|thioredoxin domain containing 11	AK029166|Txndc11|106200|thioredoxin domain containing 11
mm9_v1_chr4_+_116358148_116358251	0.447845	bHLH_family.p2	AK008711|Prdx1|18477|peroxiredoxin 1	AK010688|Prdx1|18477|peroxiredoxin 1	AK083243|Prdx1|18477|peroxiredoxin 1	AK145138|Prdx1|18477|peroxiredoxin 1	AK150797|Prdx1|18477|peroxiredoxin 1	AK151459|Prdx1|18477|peroxiredoxin 1	AK163984|Prdx1|18477|peroxiredoxin 1	NM_011034|Prdx1|18477|peroxiredoxin 1	AK151760|Prdx1|18477|peroxiredoxin 1	AK167624|Prdx1|18477|peroxiredoxin 1	AK169154|Prdx1|18477|peroxiredoxin 1	D21252|Prdx1|18477|peroxiredoxin 1	AK002287|Prdx1|18477|peroxiredoxin 1	D16142|Prdx1|18477|peroxiredoxin 1	BC086648|Prdx1|18477|peroxiredoxin 1	BC083348|Prdx1|18477|peroxiredoxin 1
mm9_v1_chr7_+_58877199_58877199	0.447801	bHLH_family.p2	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chr14_-_34260308_34260313	0.447659	bHLH_family.p2	BC053027|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr3_-_85691167_85691439	0.446709	bHLH_family.p2	BC119772|Glt28d2|320302|glycosyltransferase 28 domain containing 2	BC121823|Glt28d2|320302|glycosyltransferase 28 domain containing 2	AK029059|Glt28d2|320302|glycosyltransferase 28 domain containing 2	AK030588|Glt28d2|320302|glycosyltransferase 28 domain containing 2	AK032049|Glt28d2|320302|glycosyltransferase 28 domain containing 2	NM_177130|Glt28d2|320302|glycosyltransferase 28 domain containing 2
mm9_v1_chr11_+_31865591_31865642	0.446573	bHLH_family.p2	AK015006|4930524B15Rik|67592|RIKEN cDNA 4930524B15 gene	AK015879|4930524B15Rik|67592|RIKEN cDNA 4930524B15 gene	NM_026262|4930524B15Rik|67592|RIKEN cDNA 4930524B15 gene	BC114574|4930524B15Rik|67592|RIKEN cDNA 4930524B15 gene
mm9_v1_chr9_+_57977155_57977155	0.446466	bHLH_family.p2	AF062476|Stra6|20897|stimulated by retinoic acid gene 6	NM_009291|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chr19_-_11205360_11205367	0.446398	bHLH_family.p2	AK006056|1700017D01Rik|69369|RIKEN cDNA 1700017D01 gene	NM_027058|1700017D01Rik|69369|RIKEN cDNA 1700017D01 gene
mm9_v1_chr7_+_104520120_104520143	0.445564	bHLH_family.p2	AK166897|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	NM_199035|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	AK141341|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	AK166755|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	BC061244|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)
mm9_v1_chr4_+_99654571_99654630	0.445053	bHLH_family.p2	BC005617|Pgm2|72157|phosphoglucomutase 2
mm9_v1_chr17_-_25922419_25922537	0.444854	bHLH_family.p2	BC083322|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC005586|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK047517|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK034798|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC030466|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK032999|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK080454|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK154248|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK012748|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK021220|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr7_-_150155131_150155168	0.444479	bHLH_family.p2	BC019520|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	AK010738|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	AK167324|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)	NM_008554|Ascl2|17173|achaete-scute complex homolog 2 (Drosophila)
mm9_v1_chr11_-_100334076_100334121	0.44375	bHLH_family.p2	BC111873|Klhl11|217194|kelch-like 11 (Drosophila)	AK029101|Klhl11|217194|kelch-like 11 (Drosophila)	NM_172565|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr9_-_58589362_58589365	0.443572	bHLH_family.p2	AK010725|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene	BC038688|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene	NM_028598|2410076I21Rik|73673|RIKEN cDNA 2410076I21 gene
mm9_v1_chr3_+_102975621_102975695	0.443517	bHLH_family.p2	NM_026602|Bcas2|68183|breast carcinoma amplified sequence 2	BC013627|Bcas2|68183|breast carcinoma amplified sequence 2	BC037062|Bcas2|68183|breast carcinoma amplified sequence 2	AK018786|Bcas2|68183|breast carcinoma amplified sequence 2	AK005825|Bcas2|68183|breast carcinoma amplified sequence 2	AK020098|Bcas2|68183|breast carcinoma amplified sequence 2	AK153513|Bcas2|68183|breast carcinoma amplified sequence 2	AK166967|Bcas2|68183|breast carcinoma amplified sequence 2	AY043239|Bcas2|68183|breast carcinoma amplified sequence 2	BC023382|Bcas2|68183|breast carcinoma amplified sequence 2
mm9_v1_chr7_+_121889279_121889421	0.443478	bHLH_family.p2	NM_173767|Insc|233752|inscuteable homolog (Drosophila)	AK188559|Insc|233752|inscuteable homolog (Drosophila)
mm9_v1_chr5_-_38952777_38952930	0.443297	bHLH_family.p2	BC119358|Wdr1|22388|WD repeat domain 1	BC125295|Wdr1|22388|WD repeat domain 1	AK165225|Wdr1|22388|WD repeat domain 1	AK165323|Wdr1|22388|WD repeat domain 1	AK167813|Wdr1|22388|WD repeat domain 1	AK151146|Wdr1|22388|WD repeat domain 1	AF020055|Wdr1|22388|WD repeat domain 1	NM_011715|Wdr1|22388|WD repeat domain 1	AK153338|Wdr1|22388|WD repeat domain 1	AK170379|Wdr1|22388|WD repeat domain 1	AK167241|Wdr1|22388|WD repeat domain 1	AK169893|Wdr1|22388|WD repeat domain 1	AK156300|Wdr1|22388|WD repeat domain 1	AK167275|Wdr1|22388|WD repeat domain 1	AK004858|Wdr1|22388|WD repeat domain 1	AK169835|Wdr1|22388|WD repeat domain 1	BC049117|Wdr1|22388|WD repeat domain 1
mm9_v1_chr16_-_36874886_36874911	0.443041	bHLH_family.p2	BC056626|Eaf2|106389|ELL associated factor 2	NM_134111|Eaf2|106389|ELL associated factor 2
mm9_v1_chr10_-_68675679_68675845	0.442718	bHLH_family.p2	AK084964|A930033H14Rik|320700|RIKEN cDNA A930033H14 gene	AK044689|A930033H14Rik|320700|RIKEN cDNA A930033H14 gene
mm9_v1_chr2_-_160698705_160698728	0.442633	bHLH_family.p2	AK143296|Zhx3|320799|zinc fingers and homeoboxes 3	BC058111|Zhx3|320799|zinc fingers and homeoboxes 3	NM_177263|Zhx3|320799|zinc fingers and homeoboxes 3
mm9_v1_chr9_-_42072256_42072341	0.442214	bHLH_family.p2	AB016248|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	BC024132|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK154309|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK043825|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK077670|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr5_+_125956205_125956219	0.442209	bHLH_family.p2	AK043848|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr10_-_80363606_80363713	0.441521	bHLH_family.p2	AF144702|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	NM_013895|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr12_+_107022903_107023027	0.441515	bHLH_family.p2	NM_011112|Papola|18789|poly (A) polymerase alpha	AK028940|Papola|18789|poly (A) polymerase alpha	AK090096|Papola|18789|poly (A) polymerase alpha	AK132704|Papola|18789|poly (A) polymerase alpha	AK134552|Papola|18789|poly (A) polymerase alpha	BC060128|Papola|18789|poly (A) polymerase alpha	U58134|Papola|18789|poly (A) polymerase alpha	U52197|Papola|18789|poly (A) polymerase alpha
mm9_v1_chr19_+_4192077_4192212	0.441168	bHLH_family.p2	AK151582|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK150344|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152051|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152585|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK090070|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167538|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK159575|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	BC014828|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	U25809|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167244|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167880|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167981|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	NM_031868|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK007932|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152667|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK028392|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK153517|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK202833|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform
mm9_v1_chr17_-_80114299_80114446	0.440126	bHLH_family.p2	AK137461|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	BC050063|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	NM_009994|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	U03283|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	AK139368|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1
mm9_v1_chr17_-_34999458_34999467	0.440036	bHLH_family.p2	NM_001142706|Cfb|14962|complement factor B	NM_008198|Cfb|14962|complement factor B
mm9_v1_chr7_-_26004870_26004903	0.439296	bHLH_family.p2	AK043908|Dedd2|67379|death effector domain-containing DNA binding protein 2	BC092250|Dedd2|67379|death effector domain-containing DNA binding protein 2	NM_207677|Dedd2|67379|death effector domain-containing DNA binding protein 2	AK135320|Dedd2|67379|death effector domain-containing DNA binding protein 2
mm9_v1_chr10_-_127103595_127103798	0.439161	bHLH_family.p2	AK171180|Nab2|17937|Ngfi-A binding protein 2	BC045139|Nab2|17937|Ngfi-A binding protein 2	AK155501|Nab2|17937|Ngfi-A binding protein 2	AK158688|Nab2|17937|Ngfi-A binding protein 2	U47543|Nab2|17937|Ngfi-A binding protein 2	NM_001122895|Nab2|17937|Ngfi-A binding protein 2	NM_008668|Nab2|17937|Ngfi-A binding protein 2
mm9_v1_chr4_+_129190877_129190896	0.438969	bHLH_family.p2	AK079390|Marcksl1|17357|MARCKS-like 1	AK150261|Marcksl1|17357|MARCKS-like 1	AK152990|Marcksl1|17357|MARCKS-like 1	AK169355|Marcksl1|17357|MARCKS-like 1	X61399|Marcksl1|17357|MARCKS-like 1	BC006757|Marcksl1|17357|MARCKS-like 1
mm9_v1_chr17_-_45705198_45705339	0.437462	bHLH_family.p2	AK192311|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr4_-_19497166_19497254	0.437173	bHLH_family.p2	BC036983|Cpne3|70568|copine III	AK220348|Cpne3|70568|copine III	AK146324|Cpne3|70568|copine III	AK017357|Cpne3|70568|copine III	AK036664|Cpne3|70568|copine III	NM_027769|Cpne3|70568|copine III	AK017651|Cpne3|70568|copine III
mm9_v1_chr4_+_123582074_123582311	0.43645	bHLH_family.p2	BC048478|Mycbp|56309|c-myc binding protein	AK033289|Mycbp|56309|c-myc binding protein	AK077633|Mycbp|56309|c-myc binding protein	AK037661|Mycbp|56309|c-myc binding protein	AK077762|Mycbp|56309|c-myc binding protein	AK077995|Mycbp|56309|c-myc binding protein	AK145773|Mycbp|56309|c-myc binding protein	NM_019660|Mycbp|56309|c-myc binding protein	BC028344|Mycbp|56309|c-myc binding protein	AB015858|Mycbp|56309|c-myc binding protein
mm9_v1_chr7_-_87884693_87884845	0.436307	bHLH_family.p2	AK160892|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK029631|Iqgap1|29875|IQ motif containing GTPase activating protein 1
mm9_v1_chr2_+_172196161_172196250	0.434713	bHLH_family.p2	AK145001|Cstf1|67337|cleavage stimulation factor, 3' pre-RNA, subunit 1
mm9_v1_chr14_-_25306175_25306259	0.434491	bHLH_family.p2	BC151168|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151002|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151169|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK143315|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC053071|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr13_+_113999866_114000016	0.434472	bHLH_family.p2	BC051919|Esm1|71690|endothelial cell-specific molecule 1	NM_023612|Esm1|71690|endothelial cell-specific molecule 1	AK002913|Esm1|71690|endothelial cell-specific molecule 1	BC020038|Esm1|71690|endothelial cell-specific molecule 1	BC147648|Esm1|71690|endothelial cell-specific molecule 1	BC147650|Esm1|71690|endothelial cell-specific molecule 1	AJ249354|Esm1|71690|endothelial cell-specific molecule 1
mm9_v1_chr4_-_124370770_124370859	0.4339	bHLH_family.p2	BC043139|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	AK012550|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	NM_026031|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	AK147113|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	BC061074|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	AK145266|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)
mm9_v1_chr7_+_148592433_148592442	0.433208	bHLH_family.p2	NM_001101644|Gm4535|100043585|predicted gene 4535
mm9_v1_chr13_+_14722520_14722529	0.432856	bHLH_family.p2	AK167401|AW209491|105351|expressed sequence AW209491	NM_134067|AW209491|105351|expressed sequence AW209491
mm9_v1_chr11_+_80022587_80022605	0.432365	bHLH_family.p2	AK169811|Rhot1|59040|ras homolog gene family, member T1	AK021245|Rhot1|59040|ras homolog gene family, member T1	AK019059|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr11_-_119216770_119216851	0.432132	bHLH_family.p2	AK141266|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AF153827|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AF304053|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AF304054|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	BC130268|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK034220|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK052266|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK128926|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	NM_018822|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK076267|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)
mm9_v1_chr2_-_58012447_58012596	0.432109	bHLH_family.p2	AF192525|Cytip|227929|cytohesin 1 interacting protein	AK089364|Cytip|227929|cytohesin 1 interacting protein	AF374273|Cytip|227929|cytohesin 1 interacting protein	AK152784|Cytip|227929|cytohesin 1 interacting protein	AK169575|Cytip|227929|cytohesin 1 interacting protein	BC007144|Cytip|227929|cytohesin 1 interacting protein	AK168343|Cytip|227929|cytohesin 1 interacting protein	AK037842|Cytip|227929|cytohesin 1 interacting protein	AK157859|Cytip|227929|cytohesin 1 interacting protein	AK166254|Cytip|227929|cytohesin 1 interacting protein	AK170544|Cytip|227929|cytohesin 1 interacting protein	AK170796|Cytip|227929|cytohesin 1 interacting protein	AK171467|Cytip|227929|cytohesin 1 interacting protein	AK172380|Cytip|227929|cytohesin 1 interacting protein	NM_139200|Cytip|227929|cytohesin 1 interacting protein	AK170301|Cytip|227929|cytohesin 1 interacting protein	AK172071|Cytip|227929|cytohesin 1 interacting protein	AK030882|Cytip|227929|cytohesin 1 interacting protein
mm9_v1_chr6_+_4455686_4455760	0.43181	bHLH_family.p2	AK159212|Col1a2|12843|collagen, type I, alpha 2	AK161017|Col1a2|12843|collagen, type I, alpha 2	NM_007743|Col1a2|12843|collagen, type I, alpha 2	AK160098|Col1a2|12843|collagen, type I, alpha 2	AK160946|Col1a2|12843|collagen, type I, alpha 2	AK159578|Col1a2|12843|collagen, type I, alpha 2	AK031577|Col1a2|12843|collagen, type I, alpha 2	AK132496|Col1a2|12843|collagen, type I, alpha 2	AK157724|Col1a2|12843|collagen, type I, alpha 2	AK159408|Col1a2|12843|collagen, type I, alpha 2	AK160787|Col1a2|12843|collagen, type I, alpha 2	AK160788|Col1a2|12843|collagen, type I, alpha 2	AK160790|Col1a2|12843|collagen, type I, alpha 2	AK161605|Col1a2|12843|collagen, type I, alpha 2	AK164808|Col1a2|12843|collagen, type I, alpha 2	BC007158|Col1a2|12843|collagen, type I, alpha 2	BC042503|Col1a2|12843|collagen, type I, alpha 2	X58251|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr3_-_36374562_36374570	0.431207	bHLH_family.p2	U29396|Anxa5|11747|annexin A5
mm9_v1_chr2_+_26771885_26771945	0.431085	bHLH_family.p2	AK166181|Surf2|20931|surfeit gene 2	AK157125|Surf2|20931|surfeit gene 2	AK172018|Surf2|20931|surfeit gene 2	AK165559|Surf2|20931|surfeit gene 2	BC049779|Surf2|20931|surfeit gene 2	BC096401|Surf2|20931|surfeit gene 2	NM_013678|Surf2|20931|surfeit gene 2
mm9_v1_chr4_-_148800634_148800700	0.430906	bHLH_family.p2	BC075620|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr17_-_56416148_56416230	0.430792	bHLH_family.p2	AK054219|Ticam1|106759|toll-like receptor adaptor molecule 1	AK089679|Ticam1|106759|toll-like receptor adaptor molecule 1	AK083836|Ticam1|106759|toll-like receptor adaptor molecule 1	AK086237|Ticam1|106759|toll-like receptor adaptor molecule 1	BC037048|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155906|Ticam1|106759|toll-like receptor adaptor molecule 1	AK171578|Ticam1|106759|toll-like receptor adaptor molecule 1	AK143766|Ticam1|106759|toll-like receptor adaptor molecule 1	AK150150|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155245|Ticam1|106759|toll-like receptor adaptor molecule 1	NM_174989|Ticam1|106759|toll-like receptor adaptor molecule 1
mm9_v1_chr19_+_45101318_45101473	0.428363	bHLH_family.p2	AK202462|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK203408|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK205448|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK210216|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK215584|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK215776|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK217660|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chr4_+_11118855_11118930	0.428125	bHLH_family.p2	NM_009830|Ccne2|12448|cyclin E2	AK010929|Ccne2|12448|cyclin E2	AK031116|Ccne2|12448|cyclin E2	AK037791|Ccne2|12448|cyclin E2	AK167428|Ccne2|12448|cyclin E2
mm9_v1_chr14_+_55045792_55045808	0.428096	bHLH_family.p2	BC060043|Mrpl52|68836|mitochondrial ribosomal protein L52
mm9_v1_chr10_-_79781499_79781649	0.427234	bHLH_family.p2	
mm9_v1_chrX_+_97969784_97969833	0.425416	bHLH_family.p2	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr19_+_9092973_9093058	0.423997	bHLH_family.p2	AK003448|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr18_+_65183497_65183507	0.423439	bHLH_family.p2	AK031842|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr17_-_44951745_44951745	0.422579	bHLH_family.p2	DQ458792|Runx2|12393|runt related transcription factor 2	NM_001146038|Runx2|12393|runt related transcription factor 2	NM_009820|Runx2|12393|runt related transcription factor 2
mm9_v1_chr2_+_172196428_172196504	0.422052	bHLH_family.p2	BC003440|Cstf1|67337|cleavage stimulation factor, 3' pre-RNA, subunit 1	NM_024199|Cstf1|67337|cleavage stimulation factor, 3' pre-RNA, subunit 1	AK050686|Cstf1|67337|cleavage stimulation factor, 3' pre-RNA, subunit 1
mm9_v1_chr8_+_122099134_122099215	0.420139	bHLH_family.p2	AK019633|Lrrc50|68270|leucine rich repeat containing 50	NM_026648|Lrrc50|68270|leucine rich repeat containing 50	BC050751|Lrrc50|68270|leucine rich repeat containing 50
mm9_v1_chr13_+_55050729_55050861	0.420001	bHLH_family.p2	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr2_+_49307005_49307084	0.419625	bHLH_family.p2	NM_172663|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)	AK031025|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)
mm9_v1_chr9_-_95412264_95412414	0.419619	bHLH_family.p2	BC031497|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC080699|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011588|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC059732|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011796|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK029898|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC068265|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_001114977|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_026476|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr15_+_10882086_10882145	0.419476	bHLH_family.p2	AK128898|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AF246265|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK029352|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK075867|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK081704|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	NM_030888|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC055047|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC019636|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC055859|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3
mm9_v1_chr5_+_123794456_123794498	0.418928	bHLH_family.p2	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr2_-_144157097_144157121	0.418885	bHLH_family.p2	AY090538|Ovol2|107586|ovo-like 2 (Drosophila)	NM_152947|Ovol2|107586|ovo-like 2 (Drosophila)	AB101295|Ovol2|107586|ovo-like 2 (Drosophila)
mm9_v1_chr6_+_57087346_57087346	0.418303	bHLH_family.p2	BC104398|Vmn1r11|113860|vomeronasal 1 receptor 11	BC104399|Vmn1r11|113860|vomeronasal 1 receptor 11	NM_053233|Vmn1r11|113860|vomeronasal 1 receptor 11
mm9_v1_chr7_-_127288785_127288804	0.417055	bHLH_family.p2	BC071183|Zp2|22787|zona pellucida glycoprotein 2	AK135903|Zp2|22787|zona pellucida glycoprotein 2	M34148|Zp2|22787|zona pellucida glycoprotein 2	NM_011775|Zp2|22787|zona pellucida glycoprotein 2	AK138699|Zp2|22787|zona pellucida glycoprotein 2
mm9_v1_chr17_-_71351523_71351579	0.416724	bHLH_family.p2	AK045160|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK168016|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK018348|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK159151|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	BC020282|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK167553|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK151265|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK013776|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr7_+_51047260_51047348	0.416718	bHLH_family.p2	NM_028660|Klk9|101533|kallikrein related-peptidase 9	AK004807|Klk9|101533|kallikrein related-peptidase 9	BC109326|Klk9|101533|kallikrein related-peptidase 9	BC109327|Klk9|101533|kallikrein related-peptidase 9
mm9_v1_chr5_-_93104121_93104296	0.415517	bHLH_family.p2	BC137976|Ccdc158|320696|coiled-coil domain containing 158	BC145072|Ccdc158|320696|coiled-coil domain containing 158	AK029997|Ccdc158|320696|coiled-coil domain containing 158	NM_177230|Ccdc158|320696|coiled-coil domain containing 158	AK160895|Ccdc158|320696|coiled-coil domain containing 158	AK076225|Ccdc158|320696|coiled-coil domain containing 158
mm9_v1_chr1_+_122017763_122017771	0.414689	bHLH_family.p2	AK014026|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene	NM_001172074|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene	NM_028439|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene	BC028767|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene
mm9_v1_chr11_+_45793811_45793811	0.414573	bHLH_family.p2	AY005801|Sox30|214105|SRY-box containing gene 30	NM_173384|Sox30|214105|SRY-box containing gene 30
mm9_v1_chr10_-_42303392_42303437	0.411202	bHLH_family.p2	NM_152229|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	AK132201|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	S77482|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1	BC057104|Nr2e1|21907|nuclear receptor subfamily 2, group E, member 1
mm9_v1_chr5_-_24236497_24236497	0.410743	bHLH_family.p2	BC059069|Wdr86|269633|WD repeat domain 86	NM_001081441|Wdr86|269633|WD repeat domain 86
mm9_v1_chr18_+_12327237_12327264	0.410048	bHLH_family.p2	AK144623|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene	NM_029623|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene	AK010309|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene	AK154240|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene	AK159691|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene	BC021846|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene	BC012285|3110002H16Rik|76482|RIKEN cDNA 3110002H16 gene
mm9_v1_chr3_-_8964045_8964059	0.409344	bHLH_family.p2	AY048852|Tpd52|21985|tumor protein D52	NM_001025261|Tpd52|21985|tumor protein D52	NM_001025262|Tpd52|21985|tumor protein D52
mm9_v1_chr13_+_35833181_35833351	0.408788	bHLH_family.p2	BC062123|Cdyl|12593|chromodomain protein, Y chromosome-like	AK156509|Cdyl|12593|chromodomain protein, Y chromosome-like	NM_001123386|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr9_+_40609317_40609406	0.408657	bHLH_family.p2	AK169293|Hspa8|15481|heat shock protein 8	AK166643|Hspa8|15481|heat shock protein 8	AK145416|Hspa8|15481|heat shock protein 8	AK146547|Hspa8|15481|heat shock protein 8	AK151127|Hspa8|15481|heat shock protein 8	AK151516|Hspa8|15481|heat shock protein 8	AK151775|Hspa8|15481|heat shock protein 8	AK151808|Hspa8|15481|heat shock protein 8	AK151948|Hspa8|15481|heat shock protein 8	AK152768|Hspa8|15481|heat shock protein 8	AK152803|Hspa8|15481|heat shock protein 8	AK153032|Hspa8|15481|heat shock protein 8	AK166776|Hspa8|15481|heat shock protein 8	AK166861|Hspa8|15481|heat shock protein 8	AK166908|Hspa8|15481|heat shock protein 8	AK167043|Hspa8|15481|heat shock protein 8	AK167121|Hspa8|15481|heat shock protein 8	AK167163|Hspa8|15481|heat shock protein 8	AK167845|Hspa8|15481|heat shock protein 8	AK167910|Hspa8|15481|heat shock protein 8	AK168435|Hspa8|15481|heat shock protein 8	AK168492|Hspa8|15481|heat shock protein 8	AK168542|Hspa8|15481|heat shock protein 8	AK168750|Hspa8|15481|heat shock protein 8	AK168776|Hspa8|15481|heat shock protein 8	AK168887|Hspa8|15481|heat shock protein 8	AK168934|Hspa8|15481|heat shock protein 8	AK169329|Hspa8|15481|heat shock protein 8	NM_031165|Hspa8|15481|heat shock protein 8	AK150701|Hspa8|15481|heat shock protein 8	AK152315|Hspa8|15481|heat shock protein 8	AK167229|Hspa8|15481|heat shock protein 8	AK171434|Hspa8|15481|heat shock protein 8	AK081701|Hspa8|15481|heat shock protein 8	AK151892|Hspa8|15481|heat shock protein 8	AK167254|Hspa8|15481|heat shock protein 8	AK004608|Hspa8|15481|heat shock protein 8	AK035286|Hspa8|15481|heat shock protein 8	AK075935|Hspa8|15481|heat shock protein 8	AK098074|Hspa8|15481|heat shock protein 8	AK146985|Hspa8|15481|heat shock protein 8	AK151041|Hspa8|15481|heat shock protein 8	AK151065|Hspa8|15481|heat shock protein 8	AK151287|Hspa8|15481|heat shock protein 8	AK151435|Hspa8|15481|heat shock protein 8	AK151741|Hspa8|15481|heat shock protein 8	AK151865|Hspa8|15481|heat shock protein 8	AK151997|Hspa8|15481|heat shock protein 8	AK152598|Hspa8|15481|heat shock protein 8	AK152697|Hspa8|15481|heat shock protein 8	AK152703|Hspa8|15481|heat shock protein 8	AK153834|Hspa8|15481|heat shock protein 8	AK157831|Hspa8|15481|heat shock protein 8	AK159479|Hspa8|15481|heat shock protein 8	AK162775|Hspa8|15481|heat shock protein 8	AK163987|Hspa8|15481|heat shock protein 8	AK164000|Hspa8|15481|heat shock protein 8	AK166545|Hspa8|15481|heat shock protein 8	AK166767|Hspa8|15481|heat shock protein 8	AK166808|Hspa8|15481|heat shock protein 8	AK166846|Hspa8|15481|heat shock protein 8	AK166873|Hspa8|15481|heat shock protein 8	AK166910|Hspa8|15481|heat shock protein 8	AK166913|Hspa8|15481|heat shock protein 8	AK166933|Hspa8|15481|heat shock protein 8	AK167122|Hspa8|15481|heat shock protein 8	AK167218|Hspa8|15481|heat shock protein 8	AK167414|Hspa8|15481|heat shock protein 8	AK168519|Hspa8|15481|heat shock protein 8	AK168577|Hspa8|15481|heat shock protein 8	AK168625|Hspa8|15481|heat shock protein 8	AK168654|Hspa8|15481|heat shock protein 8	AK169093|Hspa8|15481|heat shock protein 8	AK169179|Hspa8|15481|heat shock protein 8	AK169236|Hspa8|15481|heat shock protein 8	AK169594|Hspa8|15481|heat shock protein 8	AK166830|Hspa8|15481|heat shock protein 8	AK167134|Hspa8|15481|heat shock protein 8	AK147864|Hspa8|15481|heat shock protein 8	AK145579|Hspa8|15481|heat shock protein 8	AK146708|Hspa8|15481|heat shock protein 8	AK150958|Hspa8|15481|heat shock protein 8	AK151537|Hspa8|15481|heat shock protein 8	AK166721|Hspa8|15481|heat shock protein 8	AK168711|Hspa8|15481|heat shock protein 8	AK149954|Hspa8|15481|heat shock protein 8	AK150474|Hspa8|15481|heat shock protein 8	AK150498|Hspa8|15481|heat shock protein 8	AK190650|Hspa8|15481|heat shock protein 8	AK191135|Hspa8|15481|heat shock protein 8	AK193674|Hspa8|15481|heat shock protein 8	AK196709|Hspa8|15481|heat shock protein 8	AK196874|Hspa8|15481|heat shock protein 8	AK197877|Hspa8|15481|heat shock protein 8	AK197978|Hspa8|15481|heat shock protein 8	AK201032|Hspa8|15481|heat shock protein 8	AK202337|Hspa8|15481|heat shock protein 8	AK206185|Hspa8|15481|heat shock protein 8	AK210977|Hspa8|15481|heat shock protein 8	AK214010|Hspa8|15481|heat shock protein 8	BC085486|Hspa8|15481|heat shock protein 8	M19141|Hspa8|15481|heat shock protein 8	BC106193|Hspa8|15481|heat shock protein 8	BC089322|Hspa8|15481|heat shock protein 8	BC094900|Hspa8|15481|heat shock protein 8	AK201241|Hspa8|15481|heat shock protein 8	BC089457|Hspa8|15481|heat shock protein 8	BC066191|Hspa8|15481|heat shock protein 8	U27129|Hspa8|15481|heat shock protein 8
mm9_v1_chr6_-_91423388_91423454	0.408319	bHLH_family.p2	AK010479|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4	BC019405|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4	NM_133928|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4
mm9_v1_chr4_+_116230293_116230350	0.408159	bHLH_family.p2	AK037224|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK133761|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK019942|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	BC066034|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	NM_029868|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr7_+_134944168_134944205	0.406817	bHLH_family.p2	BC006822|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC018525|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC132605|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC138589|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AF277718|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr12_+_112088488_112088532	0.40677	bHLH_family.p2	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr10_+_60638009_60638092	0.406745	bHLH_family.p2	AF257502|Tbata|65971|thymus, brain and testes associated	AF257503|Tbata|65971|thymus, brain and testes associated	AY243457|Tbata|65971|thymus, brain and testes associated	NM_001017407|Tbata|65971|thymus, brain and testes associated	NM_001017409|Tbata|65971|thymus, brain and testes associated	NM_023064|Tbata|65971|thymus, brain and testes associated	EU622858|Tbata|65971|thymus, brain and testes associated
mm9_v1_chr1_-_135506798_135506877	0.406532	bHLH_family.p2	BC055765|Snrpe|20643|small nuclear ribonucleoprotein E	BC051207|Snrpe|20643|small nuclear ribonucleoprotein E	BC008262|Snrpe|20643|small nuclear ribonucleoprotein E	AK019462|Snrpe|20643|small nuclear ribonucleoprotein E	NM_009227|Snrpe|20643|small nuclear ribonucleoprotein E
mm9_v1_chrX_+_21292025_21292267	0.406499	bHLH_family.p2	NM_020049|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF161714|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AF320226|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AK018553|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129908|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	BC129909|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14	AB033285|Slc6a14|56774|solute carrier family 6 (neurotransmitter transporter), member 14
mm9_v1_chr12_-_29382024_29382106	0.406487	bHLH_family.p2	BC002235|Ttc15|217449|tetratricopeptide repeat domain 15
mm9_v1_chr19_-_43749067_43749205	0.40635	bHLH_family.p2	AF377993|Slc25a28|246696|solute carrier family 25, member 28	AF377994|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr12_+_103214174_103214251	0.405998	bHLH_family.p2	AK147746|Cpsf2|51786|cleavage and polyadenylation specific factor 2	NM_016856|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AF012822|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK054372|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK140869|Cpsf2|51786|cleavage and polyadenylation specific factor 2	AK141325|Cpsf2|51786|cleavage and polyadenylation specific factor 2	BC013628|Cpsf2|51786|cleavage and polyadenylation specific factor 2
mm9_v1_chr7_+_149489406_149489406	0.405311	bHLH_family.p2	NM_015809|Krtap5-4|50775|keratin associated protein 5-4
mm9_v1_chrX_-_80733262_80733262	0.405185	bHLH_family.p2	AB032764|Tsga8|100502723|testis specific gene A8	NM_021898|Tsga8|100502723|testis specific gene A8	NM_021898|Tsga8|100502723|testis specific gene A8
mm9_v1_chr17_-_56175896_56176097	0.404473	bHLH_family.p2	AK162715|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138602|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138603|Sh3gl1|20405|SH3-domain GRB2-like 1	BC145345|Sh3gl1|20405|SH3-domain GRB2-like 1	NM_013664|Sh3gl1|20405|SH3-domain GRB2-like 1	U58885|Sh3gl1|20405|SH3-domain GRB2-like 1	AK167505|Sh3gl1|20405|SH3-domain GRB2-like 1	AK154836|Sh3gl1|20405|SH3-domain GRB2-like 1
mm9_v1_chr1_-_174825160_174825190	0.403713	bHLH_family.p2	M23552|Apcs|20219|serum amyloid P-component	X14079|Apcs|20219|serum amyloid P-component	Y00426|Apcs|20219|serum amyloid P-component	NM_011318|Apcs|20219|serum amyloid P-component
mm9_v1_chr12_-_28027272_28027439	0.403701	bHLH_family.p2	AB108675|Sox11|20666|SRY-box containing gene 11	BC062095|Sox11|20666|SRY-box containing gene 11	BC053503|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr3_-_40659202_40659202	0.403294	bHLH_family.p2	AK077188|Gm10731|100039043|predicted gene 10731	NM_001129886|Gm10731|100039043|predicted gene 10731
mm9_v1_chr8_+_107937521_107937521	0.403169	bHLH_family.p2	NM_001170788|Lrrc36|270091|leucine rich repeat containing 36
mm9_v1_chr11_+_105042843_105042862	0.402497	bHLH_family.p2	AK165667|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_001112705|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_011903|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)
mm9_v1_chr2_-_103637096_103637239	0.402065	bHLH_family.p2	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr7_-_31709187_31709201	0.401284	bHLH_family.p2	AY232841|Hamp2|66438|hepcidin antimicrobial peptide 2	AK007975|Hamp2|66438|hepcidin antimicrobial peptide 2	BC086895|Hamp2|66438|hepcidin antimicrobial peptide 2	AK008993|Hamp2|66438|hepcidin antimicrobial peptide 2	NM_183257|Hamp2|66438|hepcidin antimicrobial peptide 2
mm9_v1_chr18_-_25637786_25637794	0.401266	bHLH_family.p2	AK078071|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr19_-_12870612_12870615	0.400915	bHLH_family.p2	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr2_+_31829969_31830048	0.400671	bHLH_family.p2	NM_172268|Nup214|227720|nucleoporin 214	AK150915|Nup214|227720|nucleoporin 214	AK122189|Nup214|227720|nucleoporin 214	BC039282|Nup214|227720|nucleoporin 214	AK166524|Nup214|227720|nucleoporin 214
mm9_v1_chr16_-_4719058_4719139	0.400391	bHLH_family.p2	BC030039|Nmral1|67824|NmrA-like family domain containing 1	NM_026393|Nmral1|67824|NmrA-like family domain containing 1	AK146521|Nmral1|67824|NmrA-like family domain containing 1	AK012340|Nmral1|67824|NmrA-like family domain containing 1	AK078389|Nmral1|67824|NmrA-like family domain containing 1
mm9_v1_chr6_-_124761078_124761358	0.400098	bHLH_family.p2	AK216486|Tpi1|21991|triosephosphate isomerase 1	AK201708|Tpi1|21991|triosephosphate isomerase 1	AK191907|Tpi1|21991|triosephosphate isomerase 1	AK191323|Tpi1|21991|triosephosphate isomerase 1	AK190112|Tpi1|21991|triosephosphate isomerase 1	AK204501|Tpi1|21991|triosephosphate isomerase 1
mm9_v1_chr6_+_29476655_29476748	0.400015	bHLH_family.p2	AK150598|Irf5|27056|interferon regulatory factor 5	AK152042|Irf5|27056|interferon regulatory factor 5	AK171356|Irf5|27056|interferon regulatory factor 5	AK151019|Irf5|27056|interferon regulatory factor 5	AF028725|Irf5|27056|interferon regulatory factor 5	NM_012057|Irf5|27056|interferon regulatory factor 5
mm9_v1_chr11_+_75401787_75401834	0.399721	bHLH_family.p2	AK187087|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK187515|Pitpna|18738|phosphatidylinositol transfer protein, alpha	S72681|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr11_-_70135960_70136019	0.399177	bHLH_family.p2	U39200|Alox12e|11685|arachidonate lipoxygenase, epidermal	AK138743|Alox12e|11685|arachidonate lipoxygenase, epidermal	BC013751|Alox12e|11685|arachidonate lipoxygenase, epidermal	BC051047|Alox12e|11685|arachidonate lipoxygenase, epidermal	NM_145684|Alox12e|11685|arachidonate lipoxygenase, epidermal	X99252|Alox12e|11685|arachidonate lipoxygenase, epidermal
mm9_v1_chr11_+_76812098_76812116	0.398123	bHLH_family.p2	NM_010484|Slc6a4|15567|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	BC108978|Slc6a4|15567|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	BC108979|Slc6a4|15567|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
mm9_v1_chr10_+_128258826_128258995	0.397825	bHLH_family.p2	NM_025364|Sarnp|66118|SAP domain containing ribonucleoprotein	AK146248|Sarnp|66118|SAP domain containing ribonucleoprotein	AK018773|Sarnp|66118|SAP domain containing ribonucleoprotein	BC157909|Sarnp|66118|SAP domain containing ribonucleoprotein	BC158023|Sarnp|66118|SAP domain containing ribonucleoprotein	BC172063|Sarnp|66118|SAP domain containing ribonucleoprotein	AK003453|Sarnp|66118|SAP domain containing ribonucleoprotein	AK088266|Sarnp|66118|SAP domain containing ribonucleoprotein	BC027510|Sarnp|66118|SAP domain containing ribonucleoprotein	BC094393|Sarnp|66118|SAP domain containing ribonucleoprotein	AK212934|Sarnp|66118|SAP domain containing ribonucleoprotein
mm9_v1_chr2_+_139503913_139503986	0.397475	bHLH_family.p2	AK077398|Ism1|319909|isthmin 1 homolog (zebrafish)	NM_001126490|Ism1|319909|isthmin 1 homolog (zebrafish)
mm9_v1_chr5_-_123974130_123974185	0.397346	bHLH_family.p2	AF203914|Diablo|66593|diablo homolog (Drosophila)	AK002887|Diablo|66593|diablo homolog (Drosophila)	AK082903|Diablo|66593|diablo homolog (Drosophila)	AK169573|Diablo|66593|diablo homolog (Drosophila)	BC024780|Diablo|66593|diablo homolog (Drosophila)	AK077198|Diablo|66593|diablo homolog (Drosophila)	AK133194|Diablo|66593|diablo homolog (Drosophila)	BC054109|Diablo|66593|diablo homolog (Drosophila)	AK012760|Diablo|66593|diablo homolog (Drosophila)	NM_023232|Diablo|66593|diablo homolog (Drosophila)
mm9_v1_chr6_-_13627853_13628000	0.397072	bHLH_family.p2	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr2_-_30816439_30816626	0.39703	bHLH_family.p2	
mm9_v1_chr11_+_101848369_101848394	0.396375	bHLH_family.p2	AK005669|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	NM_029287|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	BC116819|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	BC116821|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene	BC100517|1700006E09Rik|75437|RIKEN cDNA 1700006E09 gene
mm9_v1_chr10_-_105278374_105278437	0.396126	bHLH_family.p2	BC067068|BC067068|216292|cDNA sequence BC067068	AK144620|BC067068|216292|cDNA sequence BC067068	AK148535|BC067068|216292|cDNA sequence BC067068	NM_207522|BC067068|216292|cDNA sequence BC067068
mm9_v1_chr12_-_86217386_86217481	0.395895	bHLH_family.p2	BC119785|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AK052980|Ltbp2|16997|latent transforming growth factor beta binding protein 2	NM_013589|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AF004874|Ltbp2|16997|latent transforming growth factor beta binding protein 2
mm9_v1_chr13_-_51820743_51820812	0.395864	bHLH_family.p2	U69535|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm9_v1_chr7_+_151009071_151009071	0.394744	bHLH_family.p2	AJ307059|Dhcr7|13360|7-dehydrocholesterol reductase	NM_007856|Dhcr7|13360|7-dehydrocholesterol reductase
mm9_v1_chr1_-_171899278_171899299	0.394146	bHLH_family.p2	AK028380|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	AK050211|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	BC011464|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7
mm9_v1_chr3_-_107877121_107877254	0.393295	bHLH_family.p2	AK196006|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr10_-_60561786_60561820	0.393007	bHLH_family.p2	
mm9_v1_chr7_-_29953665_29953665	0.392766	bHLH_family.p2	BC062119|Spred3|101809|sprouty-related, EVH1 domain containing 3	NM_182927|Spred3|101809|sprouty-related, EVH1 domain containing 3
mm9_v1_chr10_-_127837521_127837572	0.392596	bHLH_family.p2	AK007473|Slc39a5|72002|solute carrier family 39 (metal ion transporter), member 5	NM_028051|Slc39a5|72002|solute carrier family 39 (metal ion transporter), member 5	AK008448|Slc39a5|72002|solute carrier family 39 (metal ion transporter), member 5	NM_028092|Slc39a5|72002|solute carrier family 39 (metal ion transporter), member 5
mm9_v1_chrX_-_11737471_11737480	0.391986	bHLH_family.p2	BC027704|2900008C10Rik|72937|RIKEN cDNA 2900008C10 gene	AK129398|Bcor|71458|BCL6 interacting corepressor	NM_001168321|Bcor|71458|BCL6 interacting corepressor
mm9_v1_chrX_-_101176574_101176590	0.391457	bHLH_family.p2	AF069992|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr2_-_180655611_180655736	0.391446	bHLH_family.p2	BC061479|Ythdf1|228994|YTH domain family 1	AK172582|Ythdf1|228994|YTH domain family 1	AK075846|Ythdf1|228994|YTH domain family 1	BC065050|Ythdf1|228994|YTH domain family 1	NM_173761|Ythdf1|228994|YTH domain family 1	AK033241|Ythdf1|228994|YTH domain family 1	AK046768|Ythdf1|228994|YTH domain family 1
mm9_v1_chr2_+_149230984_149231068	0.390418	bHLH_family.p2	AB036743|Cst10|58214|cystatin 10 (chondrocytes)	NM_021405|Cst10|58214|cystatin 10 (chondrocytes)	BC048364|Cst10|58214|cystatin 10 (chondrocytes)
mm9_v1_chr14_-_31942057_31942124	0.389901	bHLH_family.p2	AK036279|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene	AK008341|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene	AK019298|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene	AK007443|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene
mm9_v1_chr2_+_181599126_181599193	0.389762	bHLH_family.p2	AK010875|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK021353|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK031110|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK005152|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK088206|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K	AK008637|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K
mm9_v1_chr10_+_36226612_36226726	0.389721	bHLH_family.p2	NM_001081208|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147490|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147493|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC150973|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC158004|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	AK086098|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chr12_+_21292157_21292312	0.388931	bHLH_family.p2	NM_018813|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	AK157205|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	AK171838|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	AK149953|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	AK158036|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	BC100569|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	AK170842|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	BC023297|Cpsf3|54451|cleavage and polyadenylation specificity factor 3	AF203969|Cpsf3|54451|cleavage and polyadenylation specificity factor 3
mm9_v1_chr11_+_113485570_113485570	0.388927	bHLH_family.p2	NM_001042606|Sstr2|20606|somatostatin receptor 2	NM_009217|Sstr2|20606|somatostatin receptor 2
mm9_v1_chr5_-_141124884_141125029	0.3883	bHLH_family.p2	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr7_-_108160480_108160487	0.387863	bHLH_family.p2	L14751|P2ry2|18442|purinergic receptor P2Y, G-protein coupled 2
mm9_v1_chr4_-_82151180_82151288	0.387213	bHLH_family.p2	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr3_+_108340463_108340501	0.3862	bHLH_family.p2	BC049763|1700013F07Rik|75504|RIKEN cDNA 1700013F07 gene	BC100493|1700013F07Rik|75504|RIKEN cDNA 1700013F07 gene	AK005946|1700013F07Rik|75504|RIKEN cDNA 1700013F07 gene	BC116222|1700013F07Rik|75504|RIKEN cDNA 1700013F07 gene	BC116223|1700013F07Rik|75504|RIKEN cDNA 1700013F07 gene	NM_029314|1700013F07Rik|75504|RIKEN cDNA 1700013F07 gene
mm9_v1_chr2_+_180191031_180191048	0.385551	bHLH_family.p2	AK033598|Slco4a1|108115|solute carrier organic anion transporter family, member 4a1	AK172688|Slco4a1|108115|solute carrier organic anion transporter family, member 4a1
mm9_v1_chr7_-_75409118_75409118	0.385427	bHLH_family.p2	AK021221|Pgpep1l|78444|pyroglutamyl-peptidase I-like	NM_030101|Pgpep1l|78444|pyroglutamyl-peptidase I-like
mm9_v1_chr1_-_172815525_172815670	0.384909	bHLH_family.p2	AK155026|Dusp12|80915|dual specificity phosphatase 12	AF280810|Dusp12|80915|dual specificity phosphatase 12	AF280811|Dusp12|80915|dual specificity phosphatase 12	AK004488|Dusp12|80915|dual specificity phosphatase 12	AK081862|Dusp12|80915|dual specificity phosphatase 12	AF268196|Dusp12|80915|dual specificity phosphatase 12	BC099453|Dusp12|80915|dual specificity phosphatase 12	NM_023173|Dusp12|80915|dual specificity phosphatase 12
mm9_v1_chr2_+_22751081_22751226	0.384738	bHLH_family.p2	AK012307|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	AB210841|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC026820|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC107274|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC107273|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1
mm9_v1_chr10_-_58684199_58684290	0.38409	bHLH_family.p2	BC053752|Sept10|103080|septin 10
mm9_v1_chr10_+_61595837_61595922	0.383963	bHLH_family.p2	AK008017|Neurog3|11925|neurogenin 3	NM_009719|Neurog3|11925|neurogenin 3	BC104326|Neurog3|11925|neurogenin 3	BC104327|Neurog3|11925|neurogenin 3
mm9_v1_chr1_-_174562955_174562999	0.383363	bHLH_family.p2	AK004912|Dusp23|68440|dual specificity phosphatase 23
mm9_v1_chr10_+_74869758_74869765	0.383354	bHLH_family.p2	AK149373|Upb1|103149|ureidopropionase, beta	AK149480|Upb1|103149|ureidopropionase, beta
mm9_v1_chr3_-_75760691_75760752	0.382707	bHLH_family.p2	BC086642|Golim4|73124|golgi integral membrane protein 4	BC089354|Golim4|73124|golgi integral membrane protein 4	NM_175193|Golim4|73124|golgi integral membrane protein 4
mm9_v1_chr3_-_88100759_88100800	0.382675	bHLH_family.p2	AK006195|1700021C14Rik|76927|RIKEN cDNA 1700021C14 gene	NM_029801|1700021C14Rik|76927|RIKEN cDNA 1700021C14 gene	BC107298|1700021C14Rik|76927|RIKEN cDNA 1700021C14 gene
mm9_v1_chr15_-_76479476_76479559	0.381998	bHLH_family.p2	BC039646|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr8_+_24263742_24263871	0.381924	bHLH_family.p2	AK018683|Nkx6-3|74561|NK6 homeobox 3	NM_029002|Nkx6-3|74561|NK6 homeobox 3	AK147163|Nkx6-3|74561|NK6 homeobox 3	BC140994|Nkx6-3|74561|NK6 homeobox 3
mm9_v1_chr11_-_105042428_105042746	0.381321	bHLH_family.p2	BC099431|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene	AK156756|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene	AK148336|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene	AK006771|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene
mm9_v1_chr9_-_96379093_96379128	0.380745	bHLH_family.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr11_-_59005268_59005341	0.380504	bHLH_family.p2	U53514|Guk1|14923|guanylate kinase 1	AK004205|Guk1|14923|guanylate kinase 1	AK013514|Guk1|14923|guanylate kinase 1	BC024625|Guk1|14923|guanylate kinase 1
mm9_v1_chr12_-_88488272_88488550	0.380173	bHLH_family.p2	AK043713|Pomt2|217734|protein-O-mannosyltransferase 2	AK050915|Pomt2|217734|protein-O-mannosyltransferase 2	BC079589|Pomt2|217734|protein-O-mannosyltransferase 2	BC052045|Pomt2|217734|protein-O-mannosyltransferase 2	BC062965|Pomt2|217734|protein-O-mannosyltransferase 2	AY090482|Pomt2|217734|protein-O-mannosyltransferase 2	AF246235|Pomt2|217734|protein-O-mannosyltransferase 2	AK043573|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr4_-_138313413_138313517	0.380057	bHLH_family.p2	BC125567|Pla2g2f|26971|phospholipase A2, group IIF	AK029254|Pla2g2f|26971|phospholipase A2, group IIF	AF166099|Pla2g2f|26971|phospholipase A2, group IIF	NM_012045|Pla2g2f|26971|phospholipase A2, group IIF
mm9_v1_chr4_-_14753526_14753603	0.379519	bHLH_family.p2	BC087552|Otud6b|72201|OTU domain containing 6B	AK172229|Otud6b|72201|OTU domain containing 6B	AK172338|Otud6b|72201|OTU domain containing 6B	BC031474|Otud6b|72201|OTU domain containing 6B	AK011203|Otud6b|72201|OTU domain containing 6B	AK169134|Otud6b|72201|OTU domain containing 6B	AK166546|Otud6b|72201|OTU domain containing 6B	AK144761|Otud6b|72201|OTU domain containing 6B	AK166445|Otud6b|72201|OTU domain containing 6B	AK155761|Otud6b|72201|OTU domain containing 6B
mm9_v1_chr8_+_89175467_89175467	0.379127	bHLH_family.p2	AK075719|Lonp2|66887|lon peptidase 2, peroxisomal	NM_001168591|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr19_-_17431079_17431156	0.378802	bHLH_family.p2	BC039126|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK199888|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK045216|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK167048|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	D87333|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_173442|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr1_-_59176902_59176978	0.378508	bHLH_family.p2	BC147243|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	BC147244|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK161697|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001033449|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr13_-_58228748_58228812	0.377519	bHLH_family.p2	BC023150|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr5_-_46248719_46248778	0.376233	bHLH_family.p2	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr11_-_69609381_69609404	0.376194	bHLH_family.p2	M14537|Chrnb1|11443|cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
mm9_v1_chr8_+_125372273_125372281	0.3758	bHLH_family.p2	NM_007662|Cdh15|12555|cadherin 15
mm9_v1_chr11_-_101026399_101026436	0.375752	bHLH_family.p2	AK052371|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm9_v1_chr8_-_123158229_123158270	0.375543	bHLH_family.p2	AK004494|1190005I06Rik|68918|RIKEN cDNA 1190005I06 gene
mm9_v1_chr5_+_125956256_125956274	0.375146	bHLH_family.p2	BC026817|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr11_+_87551052_87551101	0.374767	bHLH_family.p2	AK146235|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK168229|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK167941|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK002990|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC061174|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	NM_009296|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC024391|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC087923|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	U43154|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)
mm9_v1_chr19_+_8692485_8692668	0.374695	bHLH_family.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr1_+_23768764_23768872	0.373507	bHLH_family.p2	AK052640|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	NM_172124|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AB055902|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK048146|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK220433|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC056368|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC058082|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm9_v1_chr16_-_18587061_18587061	0.37346	bHLH_family.p2	AF326960|Tbx1|21380|T-box 1	BC139474|Tbx1|21380|T-box 1	BC145636|Tbx1|21380|T-box 1	NM_011532|Tbx1|21380|T-box 1
mm9_v1_chr10_-_122633922_122634056	0.372874	bHLH_family.p2	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr11_+_102291759_102291826	0.372862	bHLH_family.p2	AK018744|Grn|14824|granulin	AK013678|Grn|14824|granulin	AK147932|Grn|14824|granulin	AK149570|Grn|14824|granulin	AK150205|Grn|14824|granulin	AK150746|Grn|14824|granulin	AK150881|Grn|14824|granulin	AK151007|Grn|14824|granulin	AK151162|Grn|14824|granulin	AK151343|Grn|14824|granulin	AK151713|Grn|14824|granulin	AK152048|Grn|14824|granulin	AK152087|Grn|14824|granulin	AK152705|Grn|14824|granulin	AK152765|Grn|14824|granulin	AK153269|Grn|14824|granulin	AK153289|Grn|14824|granulin	AK153418|Grn|14824|granulin	AK153470|Grn|14824|granulin	AK154492|Grn|14824|granulin	AK160033|Grn|14824|granulin	AK159809|Grn|14824|granulin	AK150125|Grn|14824|granulin	AK151756|Grn|14824|granulin	AK150717|Grn|14824|granulin	AK159557|Grn|14824|granulin
mm9_v1_chr3_-_36374517_36374560	0.372513	bHLH_family.p2	D63423|Anxa5|11747|annexin A5
mm9_v1_chr15_+_101974792_101974939	0.372466	bHLH_family.p2	X81584|Igfbp6|16012|insulin-like growth factor binding protein 6	BC012723|Igfbp6|16012|insulin-like growth factor binding protein 6	AK157982|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr7_-_27951724_27951820	0.37095	bHLH_family.p2	AF453879|Egln2|112406|EGL nine homolog 2 (C. elegans)	BC023299|Egln2|112406|EGL nine homolog 2 (C. elegans)	BC086764|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK075582|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK159206|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK167477|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK152223|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK152056|Egln2|112406|EGL nine homolog 2 (C. elegans)	AJ310547|Egln2|112406|EGL nine homolog 2 (C. elegans)	NM_053208|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr2_-_148233681_148233851	0.370832	bHLH_family.p2	CT010375|Thbd|21824|thrombomodulin	BC019154|Thbd|21824|thrombomodulin	X14432|Thbd|21824|thrombomodulin
mm9_v1_chr14_-_56341010_56341044	0.369872	bHLH_family.p2	AF127656|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127657|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127658|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127659|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127660|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127661|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127662|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	NM_019519|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	BC012214|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AK146917|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr1_+_57463391_57463391	0.369293	bHLH_family.p2	AK079116|9430016H08Rik|68115|RIKEN cDNA 9430016H08 gene	NM_001081181|9430016H08Rik|68115|RIKEN cDNA 9430016H08 gene
mm9_v1_chr9_+_95538150_95538173	0.369226	bHLH_family.p2	AF352788|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	AK132395|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	BC051174|Pcolce2|76477|procollagen C-endopeptidase enhancer 2
mm9_v1_chr8_+_93352767_93352776	0.367734	bHLH_family.p2	AK020244|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr2_+_18620627_18620649	0.367673	bHLH_family.p2	BC049634|BC061194|381350|cDNA sequence BC061194	AK132882|BC061194|381350|cDNA sequence BC061194	NM_001001334|BC061194|381350|cDNA sequence BC061194	BC061194|BC061194|381350|cDNA sequence BC061194
mm9_v1_chr8_-_23170545_23170545	0.367276	bHLH_family.p2	NM_007511|Atp7b|11979|ATPase, Cu++ transporting, beta polypeptide
mm9_v1_chr7_-_134361956_134361975	0.366997	bHLH_family.p2	NM_017461|Sept1|54204|septin 1	BC140998|Sept1|54204|septin 1	BC145081|Sept1|54204|septin 1	M37030|Sept1|54204|septin 1
mm9_v1_chr9_-_50467571_50467680	0.366105	bHLH_family.p2	AK043771|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	BC031495|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	BC026680|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	BC069862|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	AK166090|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm9_v1_chr11_+_49058980_49059003	0.365943	bHLH_family.p2	L07037|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chr12_-_60320438_60320474	0.365726	bHLH_family.p2	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chr9_+_119803988_119804030	0.365682	bHLH_family.p2	BC050106|Wdr48|67561|WD repeat domain 48	AK031244|Wdr48|67561|WD repeat domain 48	BC062967|Wdr48|67561|WD repeat domain 48	AK018396|Wdr48|67561|WD repeat domain 48	AK030041|Wdr48|67561|WD repeat domain 48	AK035273|Wdr48|67561|WD repeat domain 48	AK035864|Wdr48|67561|WD repeat domain 48	AK043970|Wdr48|67561|WD repeat domain 48	AK128953|Wdr48|67561|WD repeat domain 48	NM_026236|Wdr48|67561|WD repeat domain 48	AK033631|Wdr48|67561|WD repeat domain 48	AK012599|Wdr48|67561|WD repeat domain 48	BC048155|Wdr48|67561|WD repeat domain 48
mm9_v1_chr13_-_58316923_58316959	0.365391	bHLH_family.p2	AK048534|Ubqln1|56085|ubiquilin 1	BC028857|Ubqln1|56085|ubiquilin 1
mm9_v1_chr18_+_75178416_75178439	0.364956	bHLH_family.p2	NM_027727|Dym|69190|dymeclin	AK081242|Dym|69190|dymeclin	BC038276|Dym|69190|dymeclin	AK154794|Dym|69190|dymeclin	BC092283|Dym|69190|dymeclin
mm9_v1_chr8_+_108042645_108042656	0.364643	bHLH_family.p2	AK155153|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2	NM_008289|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2	BC014753|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2	BC066209|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2
mm9_v1_chr17_-_32540473_32540512	0.363779	bHLH_family.p2	BC132341|Rasal3|320484|RAS protein activator like 3	AK131128|Rasal3|320484|RAS protein activator like 3	AK088449|Rasal3|320484|RAS protein activator like 3	AK088987|Rasal3|320484|RAS protein activator like 3	AK041479|Rasal3|320484|RAS protein activator like 3	AK040573|Rasal3|320484|RAS protein activator like 3
mm9_v1_chr1_+_137732910_137732930	0.363593	bHLH_family.p2	BC063753|Tnnt2|21956|troponin T2, cardiac
mm9_v1_chr4_+_106584314_106584344	0.362438	bHLH_family.p2	BC003430|Ssbp3|72475|single-stranded DNA binding protein 3	AF500117|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr5_-_114893989_114894069	0.36232	bHLH_family.p2	BC022159|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK034288|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK088785|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK142286|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK020286|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	BC057558|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	NM_029956|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK148421|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)
mm9_v1_chr19_+_34141847_34141847	0.362129	bHLH_family.p2	AK154333|Lipn|70166|lipase, family member N	NM_027340|Lipn|70166|lipase, family member N
mm9_v1_chr3_+_105255444_105255490	0.36179	bHLH_family.p2	AK033962|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr2_+_92215395_92215518	0.361662	bHLH_family.p2	AK143073|Pex16|18633|peroxisomal biogenesis factor 16	NM_145122|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr2_-_26923387_26923387	0.361208	bHLH_family.p2	NM_001159602|Tmem8c|66139|transmembrane protein 8C
mm9_v1_chr9_+_95538038_95538059	0.360916	bHLH_family.p2	AK010249|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	NM_029620|Pcolce2|76477|procollagen C-endopeptidase enhancer 2
mm9_v1_chr11_-_78235686_78235735	0.360672	bHLH_family.p2	AF201903|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	NM_022411|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	BC013493|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	AK140972|Slc13a2|20500|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
mm9_v1_chr6_-_60778740_60778989	0.360422	bHLH_family.p2	BC046764|Snca|20617|synuclein, alpha	AK156316|Snca|20617|synuclein, alpha	AK014472|Snca|20617|synuclein, alpha	AF033261|Snca|20617|synuclein, alpha	NM_001042451|Snca|20617|synuclein, alpha
mm9_v1_chr12_-_36883307_36883421	0.359911	bHLH_family.p2	BC058796|Bzw2|66912|basic leucine zipper and W2 domains 2	AB244988|Bzw2|66912|basic leucine zipper and W2 domains 2	BC013060|Bzw2|66912|basic leucine zipper and W2 domains 2	AK088108|Bzw2|66912|basic leucine zipper and W2 domains 2	AK132595|Bzw2|66912|basic leucine zipper and W2 domains 2	AK162647|Bzw2|66912|basic leucine zipper and W2 domains 2	AK011253|Bzw2|66912|basic leucine zipper and W2 domains 2	AK160544|Bzw2|66912|basic leucine zipper and W2 domains 2	AK003229|Bzw2|66912|basic leucine zipper and W2 domains 2	NM_025840|Bzw2|66912|basic leucine zipper and W2 domains 2
mm9_v1_chr17_-_40931024_40931046	0.358742	bHLH_family.p2	AK018856|Crisp2|22024|cysteine-rich secretory protein 2	M25533|Crisp2|22024|cysteine-rich secretory protein 2	NM_009420|Crisp2|22024|cysteine-rich secretory protein 2	BC049615|Crisp2|22024|cysteine-rich secretory protein 2
mm9_v1_chr19_-_6532339_6532383	0.358598	bHLH_family.p2	AK045662|Gm14964|100008567|predicted gene 14964
mm9_v1_chr17_-_57013869_57013869	0.358582	bHLH_family.p2	DQ250679|Acsbg2|328845|acyl-CoA synthetase bubblegum family member 2	NM_001039114|Acsbg2|328845|acyl-CoA synthetase bubblegum family member 2
mm9_v1_chr3_-_30799013_30799120	0.358277	bHLH_family.p2	AK050678|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr19_-_11893431_11893451	0.357938	bHLH_family.p2	AK171135|Stx3|20908|syntaxin 3
mm9_v1_chr5_-_114723758_114723815	0.35761	bHLH_family.p2	BC092242|Foxn4|116810|forkhead box N4	AF323488|Foxn4|116810|forkhead box N4	BC130222|Foxn4|116810|forkhead box N4	NM_148935|Foxn4|116810|forkhead box N4	AY039039|Foxn4|116810|forkhead box N4
mm9_v1_chrX_+_82819294_82819360	0.357368	bHLH_family.p2	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr11_+_35582969_35582996	0.356119	bHLH_family.p2	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr18_+_68497163_68497259	0.355596	bHLH_family.p2	NM_013596|Mc5r|17203|melanocortin 5 receptor	U08354|Mc5r|17203|melanocortin 5 receptor	BC100720|Mc5r|17203|melanocortin 5 receptor	BC100721|Mc5r|17203|melanocortin 5 receptor	BC100722|Mc5r|17203|melanocortin 5 receptor	BC100723|Mc5r|17203|melanocortin 5 receptor
mm9_v1_chr17_-_24357560_24357795	0.355473	bHLH_family.p2	BC063767|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	AK146539|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	BC072612|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	NM_028056|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	AK005395|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene
mm9_v1_chr9_-_67680136_67680136	0.355396	bHLH_family.p2	NM_001163143|C2cd4a|244911|C2 calcium-dependent domain containing 4A
mm9_v1_chr8_-_87889165_87889245	0.35523	bHLH_family.p2	EU403565|Mylk3|213435|myosin light chain kinase 3	BC137983|Mylk3|213435|myosin light chain kinase 3	BC145079|Mylk3|213435|myosin light chain kinase 3	AK146683|Mylk3|213435|myosin light chain kinase 3	NM_175441|Mylk3|213435|myosin light chain kinase 3	AK052858|Mylk3|213435|myosin light chain kinase 3
mm9_v1_chr11_+_61497911_61497965	0.355096	bHLH_family.p2	NM_178618|Fam83g|69640|family with sequence similarity 83, member G	BC085279|Fam83g|69640|family with sequence similarity 83, member G	AK028566|Fam83g|69640|family with sequence similarity 83, member G
mm9_v1_chr12_-_114665550_114665585	0.354573	bHLH_family.p2	AK134155|Ighg|380794|Immunoglobulin heavy chain (gamma polypeptide)
mm9_v1_chr5_+_93238413_93238466	0.354234	bHLH_family.p2	NM_001077595|Shroom3|27428|shroom family member 3	AK164918|Shroom3|27428|shroom family member 3	AF199422|Shroom3|27428|shroom family member 3
mm9_v1_chr17_-_75951137_75951285	0.354228	bHLH_family.p2	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr16_+_93683426_93683502	0.353853	bHLH_family.p2	AK003232|Cbr3|109857|carbonyl reductase 3	BC028763|Cbr3|109857|carbonyl reductase 3	NM_173047|Cbr3|109857|carbonyl reductase 3	AK028150|Cbr3|109857|carbonyl reductase 3	BC096658|Cbr3|109857|carbonyl reductase 3	BC087735|Cbr3|109857|carbonyl reductase 3
mm9_v1_chr12_-_40764514_40764542	0.353679	bHLH_family.p2	AK006286|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr15_+_55139304_55139473	0.35363	bHLH_family.p2	AK017553|Col14a1|12818|collagen, type XIV, alpha 1	NM_181277|Col14a1|12818|collagen, type XIV, alpha 1	AY221110|Col14a1|12818|collagen, type XIV, alpha 1	BC138345|Col14a1|12818|collagen, type XIV, alpha 1	BC145244|Col14a1|12818|collagen, type XIV, alpha 1
mm9_v1_chr9_-_44226119_44226149	0.353485	bHLH_family.p2	AK162606|Ccdc84|382073|coiled-coil domain containing 84
mm9_v1_chr5_+_139856534_139856673	0.351207	bHLH_family.p2	AK155280|Gpr146|80290|G protein-coupled receptor 146	AK154478|Gpr146|80290|G protein-coupled receptor 146	AK046512|Gpr146|80290|G protein-coupled receptor 146	AK089232|Gpr146|80290|G protein-coupled receptor 146	AK154708|Gpr146|80290|G protein-coupled receptor 146	AK155876|Gpr146|80290|G protein-coupled receptor 146	NM_030258|Gpr146|80290|G protein-coupled receptor 146	BC003323|Gpr146|80290|G protein-coupled receptor 146	AK050034|Gpr146|80290|G protein-coupled receptor 146	AK087100|Gpr146|80290|G protein-coupled receptor 146	AK155212|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr2_+_35413977_35414092	0.350603	bHLH_family.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr2_-_146337646_146337787	0.349892	bHLH_family.p2	AK038838|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151040|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151041|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	AK157932|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	NM_001033348|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm9_v1_chr7_-_134852269_134852320	0.349855	bHLH_family.p2	BC005673|Bcl7c|12055|B-cell CLL/lymphoma 7C	NM_009746|Bcl7c|12055|B-cell CLL/lymphoma 7C	AK049064|Bcl7c|12055|B-cell CLL/lymphoma 7C
mm9_v1_chr1_-_167124442_167124588	0.348968	bHLH_family.p2	BC017549|Sft2d2|108735|SFT2 domain containing 2	AK036578|Sft2d2|108735|SFT2 domain containing 2	AK170590|Sft2d2|108735|SFT2 domain containing 2	AK156973|Sft2d2|108735|SFT2 domain containing 2	AK075812|Sft2d2|108735|SFT2 domain containing 2	NM_145512|Sft2d2|108735|SFT2 domain containing 2
mm9_v1_chrX_+_132804857_132804862	0.348631	bHLH_family.p2	AK208231|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1	AK004531|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr2_-_91469372_91469446	0.348453	bHLH_family.p2	M81394|F2|14061|coagulation factor II
mm9_v1_chr18_-_82576168_82576168	0.348082	bHLH_family.p2	AK138487|Galr1|14427|galanin receptor 1	NM_008082|Galr1|14427|galanin receptor 1
mm9_v1_chr9_-_108469265_108469296	0.348072	bHLH_family.p2	AK005252|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	AK014634|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm9_v1_chr8_+_24249481_24249576	0.347373	bHLH_family.p2	U73972|Ank1|11733|ankyrin 1, erythroid	BC061219|Ank1|11733|ankyrin 1, erythroid	AK134267|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr2_-_65076471_65076554	0.347137	bHLH_family.p2	AK173076|Cobll1|319876|Cobl-like 1
mm9_v1_chr5_-_149771253_149771279	0.346701	bHLH_family.p2	AK144510|1810059H22Rik|69820|RIKEN cDNA 1810059H22 gene	AK007907|1810059H22Rik|69820|RIKEN cDNA 1810059H22 gene
mm9_v1_chr1_-_135506760_135506767	0.346208	bHLH_family.p2	X65704|Snrpe|20643|small nuclear ribonucleoprotein E
mm9_v1_chr6_+_108610606_108610702	0.345597	bHLH_family.p2	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr4_+_135412062_135412110	0.345392	bHLH_family.p2	AK168571|Srsf10|14105|serine/arginine-rich splicing factor 10	AF042383|Srsf10|14105|serine/arginine-rich splicing factor 10	BC083082|Srsf10|14105|serine/arginine-rich splicing factor 10	AB015894|Srsf10|14105|serine/arginine-rich splicing factor 10	AB015895|Srsf10|14105|serine/arginine-rich splicing factor 10	BC037591|Srsf10|14105|serine/arginine-rich splicing factor 10
mm9_v1_chr19_-_46747355_46747384	0.34482	bHLH_family.p2	M64863|Cyp17a1|13074|cytochrome P450, family 17, subfamily a, polypeptide 1	AK132830|Cyp17a1|13074|cytochrome P450, family 17, subfamily a, polypeptide 1	AK134376|Cyp17a1|13074|cytochrome P450, family 17, subfamily a, polypeptide 1
mm9_v1_chr5_+_148672171_148672247	0.344682	bHLH_family.p2	AK011115|Pomp|66537|proteasome maturation protein	AK167958|Pomp|66537|proteasome maturation protein	NM_025624|Pomp|66537|proteasome maturation protein	AK003439|Pomp|66537|proteasome maturation protein	AK013934|Pomp|66537|proteasome maturation protein	BC027016|Pomp|66537|proteasome maturation protein	AK044283|Pomp|66537|proteasome maturation protein	AK132041|Pomp|66537|proteasome maturation protein	AK014296|Pomp|66537|proteasome maturation protein	AK012455|Pomp|66537|proteasome maturation protein
mm9_v1_chr4_-_144905040_144905066	0.344664	bHLH_family.p2	BC130026|Tnfrsf8|21941|tumor necrosis factor receptor superfamily, member 8	NM_009401|Tnfrsf8|21941|tumor necrosis factor receptor superfamily, member 8	U25416|Tnfrsf8|21941|tumor necrosis factor receptor superfamily, member 8	AK044269|Tnfrsf8|21941|tumor necrosis factor receptor superfamily, member 8	AK044614|Tnfrsf8|21941|tumor necrosis factor receptor superfamily, member 8
mm9_v1_chr3_-_36374572_36374652	0.344575	bHLH_family.p2	AK153476|Anxa5|11747|annexin A5	BC003716|Anxa5|11747|annexin A5	AK147740|Anxa5|11747|annexin A5	AK153388|Anxa5|11747|annexin A5	AK152185|Anxa5|11747|annexin A5
mm9_v1_chr9_-_46043339_46043387	0.344471	bHLH_family.p2	BC021776|Apoc3|11814|apolipoprotein C-III	AK002908|Apoc3|11814|apolipoprotein C-III	NM_023114|Apoc3|11814|apolipoprotein C-III	L04150|Apoc3|11814|apolipoprotein C-III	AK008260|Apoc3|11814|apolipoprotein C-III
mm9_v1_chr19_+_46576779_46576908	0.344413	bHLH_family.p2	AF281047|Trim8|93679|tripartite motif-containing 8	BC152343|Trim8|93679|tripartite motif-containing 8	BC152344|Trim8|93679|tripartite motif-containing 8	BC037065|Trim8|93679|tripartite motif-containing 8	BC060094|Trim8|93679|tripartite motif-containing 8
mm9_v1_chr14_-_71166340_71166465	0.344277	bHLH_family.p2	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr19_-_30249899_30249920	0.344212	bHLH_family.p2	AK080789|Gldc|104174|glycine decarboxylase	BC017135|Gldc|104174|glycine decarboxylase	NM_138595|Gldc|104174|glycine decarboxylase	AK080937|Gldc|104174|glycine decarboxylase	AK139929|Gldc|104174|glycine decarboxylase
mm9_v1_chr9_+_50561121_50561170	0.344137	bHLH_family.p2	BC010768|Cryab|12955|crystallin, alpha B
mm9_v1_chr3_-_127599117_127599275	0.34405	bHLH_family.p2	BC116791|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene	BC116793|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene	AK017758|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene	AK012470|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene	AK163003|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene	AK162420|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene	NM_027482|5730508B09Rik|70617|RIKEN cDNA 5730508B09 gene
mm9_v1_chr19_+_42110489_42110527	0.344015	bHLH_family.p2	BC138760|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)	BC138761|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)	AB076256|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)	AK132585|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)	AJ011118|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)	AJ245514|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)	NM_020033|Ankrd2|56642|ankyrin repeat domain 2 (stretch responsive muscle)
mm9_v1_chr19_-_43749304_43749360	0.343672	bHLH_family.p2	AK155044|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr9_+_53109774_53109787	0.343442	bHLH_family.p2	AB098163|Exph5|320051|exophilin 5	NM_176846|Exph5|320051|exophilin 5	BC120905|Exph5|320051|exophilin 5
mm9_v1_chr5_-_36071914_36071932	0.34343	bHLH_family.p2	NM_194344|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1
mm9_v1_chr2_+_152987262_152987297	0.343366	bHLH_family.p2	AK162435|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK048158|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK171487|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC110309|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK088012|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK047497|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK087048|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AB093220|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr4_-_46548933_46549015	0.343094	bHLH_family.p2	AK133220|Trim14|74735|tripartite motif-containing 14	AK148837|Trim14|74735|tripartite motif-containing 14	AK017887|Trim14|74735|tripartite motif-containing 14	AK172895|Trim14|74735|tripartite motif-containing 14	AK076277|Trim14|74735|tripartite motif-containing 14	BC116738|Trim14|74735|tripartite motif-containing 14	BC119130|Trim14|74735|tripartite motif-containing 14	AB117644|Trim14|74735|tripartite motif-containing 14	NM_029077|Trim14|74735|tripartite motif-containing 14
mm9_v1_chr5_-_124804365_124804457	0.342945	bHLH_family.p2	AF011644|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr16_-_93929811_93929811	0.342181	bHLH_family.p2	NM_001165925|Cldn14|56173|claudin 14
mm9_v1_chr8_+_87583954_87584056	0.341456	bHLH_family.p2	AK156709|Fbxw9|68628|F-box and WD-40 domain protein 9	NM_026791|Fbxw9|68628|F-box and WD-40 domain protein 9	BC043658|Fbxw9|68628|F-box and WD-40 domain protein 9
mm9_v1_chr17_-_26978355_26978414	0.341151	bHLH_family.p2	BC139299|Nkx2-5|18091|NK2 transcription factor related, locus 5 (Drosophila)	BC139303|Nkx2-5|18091|NK2 transcription factor related, locus 5 (Drosophila)	AK142146|Nkx2-5|18091|NK2 transcription factor related, locus 5 (Drosophila)
mm9_v1_chr4_+_131864590_131864592	0.341122	bHLH_family.p2	AK009175|Snhg12|100039864|small nucleolar RNA host gene 12
mm9_v1_chr7_+_109371529_109371618	0.341072	bHLH_family.p2	AK159933|Pgap2|233575|post-GPI attachment to proteins 2	AK159950|Pgap2|233575|post-GPI attachment to proteins 2	AK136764|Pgap2|233575|post-GPI attachment to proteins 2	AK146442|Pgap2|233575|post-GPI attachment to proteins 2	BC004794|Pgap2|233575|post-GPI attachment to proteins 2	NM_145583|Pgap2|233575|post-GPI attachment to proteins 2	AK152931|Pgap2|233575|post-GPI attachment to proteins 2
mm9_v1_chr4_+_41412148_41412191	0.341002	bHLH_family.p2	AK132532|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2	NM_025539|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2	AK009933|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2	AK018771|Nudt2|66401|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm9_v1_chr7_-_26181005_26181005	0.339819	bHLH_family.p2	AK029984|Lipe|16890|lipase, hormone sensitive	NM_010719|Lipe|16890|lipase, hormone sensitive
mm9_v1_chr10_-_83989221_83989289	0.339537	bHLH_family.p2	AK205593|Ckap4|216197|cytoskeleton-associated protein 4	AK212843|Ckap4|216197|cytoskeleton-associated protein 4	AK217343|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr5_+_92566909_92567009	0.338984	bHLH_family.p2	AK166587|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	BC016069|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	NM_019490|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK156070|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK144638|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK172425|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK168433|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)
mm9_v1_chr10_+_77298691_77298691	0.338682	bHLH_family.p2	AK079449|Krtap10-10|544710|keratin associated protein 10-10	NM_001024709|Krtap10-10|544710|keratin associated protein 10-10
mm9_v1_chr9_-_58050091_58050164	0.338531	bHLH_family.p2	NM_001161536|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_177193|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161539|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr10_+_117578960_117579000	0.337654	bHLH_family.p2	M20823|Mdm1|17245|transformed mouse 3T3 cell double minute 1	M20824|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490427|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490428|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr14_-_56341060_56341137	0.337509	bHLH_family.p2	AK002625|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr9_-_108469672_108469775	0.337353	bHLH_family.p2	AF235017|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	NM_023247|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	BC027513|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm9_v1_chr8_-_28239121_28239185	0.336629	bHLH_family.p2	AK152842|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm9_v1_chr9_+_57976894_57976894	0.336419	bHLH_family.p2	BC075657|Stra6|20897|stimulated by retinoic acid gene 6	NM_001162475|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chrX_+_100688896_100688955	0.33623	bHLH_family.p2	AK148110|Enox|70252|expressed neighbor of Xist	AK137473|Enox|70252|expressed neighbor of Xist	AK007997|Enox|70252|expressed neighbor of Xist
mm9_v1_chr4_-_149148173_149148404	0.33584	bHLH_family.p2	AK017628|Slc25a33|70556|solute carrier family 25, member 33	BC011293|Slc25a33|70556|solute carrier family 25, member 33	AK157423|Slc25a33|70556|solute carrier family 25, member 33	NM_027460|Slc25a33|70556|solute carrier family 25, member 33
mm9_v1_chr15_-_97816006_97816029	0.334928	bHLH_family.p2	BC030913|Col2a1|12824|collagen, type II, alpha 1
mm9_v1_chr16_-_18089085_18089282	0.334056	bHLH_family.p2	BC125327|Prodh|19125|proline dehydrogenase	BC008548|Prodh|19125|proline dehydrogenase	U80020|Prodh|19125|proline dehydrogenase	AF120279|Prodh|19125|proline dehydrogenase	AK144068|Prodh|19125|proline dehydrogenase	AK085938|Prodh|19125|proline dehydrogenase	NM_011172|Prodh|19125|proline dehydrogenase
mm9_v1_chr17_+_25608534_25608581	0.33401	bHLH_family.p2	AK005842|Tekt4|71840|tektin 4	AY485267|Tekt4|71840|tektin 4	NM_027951|Tekt4|71840|tektin 4	BC117510|Tekt4|71840|tektin 4	BC117526|Tekt4|71840|tektin 4
mm9_v1_chr4_+_155206883_155206888	0.333244	bHLH_family.p2	AK208653|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr6_-_146450713_146450744	0.332928	bHLH_family.p2	AK143206|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2
mm9_v1_chr15_+_88692581_88692634	0.33213	bHLH_family.p2	AK168014|Pim3|223775|proviral integration site 3	BC017621|Pim3|223775|proviral integration site 3	NM_145478|Pim3|223775|proviral integration site 3
mm9_v1_chrX_+_70962057_70962086	0.332097	bHLH_family.p2	AK088792|Abcd1|11666|ATP-binding cassette, sub-family D (ALD), member 1	AK153589|Abcd1|11666|ATP-binding cassette, sub-family D (ALD), member 1
mm9_v1_chr19_+_7492081_7492131	0.331243	bHLH_family.p2	NM_175381|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr1_-_120950111_120950195	0.331013	bHLH_family.p2	BC085190|Gli2|14633|GLI-Kruppel family member GLI2	BC082604|Gli2|14633|GLI-Kruppel family member GLI2	NM_001081125|Gli2|14633|GLI-Kruppel family member GLI2
mm9_v1_chr6_+_40443527_40443590	0.330332	bHLH_family.p2	BC116952|Tas2r108|57253|taste receptor, type 2, member 108	AY916507|Tas2r108|57253|taste receptor, type 2, member 108	NM_020502|Tas2r108|57253|taste receptor, type 2, member 108
mm9_v1_chr14_+_61386970_61386985	0.330173	bHLH_family.p2	DQ002401|C1qtnf9|239126|C1q and tumor necrosis factor related protein 9	NM_183175|C1qtnf9|239126|C1q and tumor necrosis factor related protein 9	BC115632|C1qtnf9|239126|C1q and tumor necrosis factor related protein 9	BC115633|C1qtnf9|239126|C1q and tumor necrosis factor related protein 9
mm9_v1_chr6_-_56975266_56975266	0.330036	bHLH_family.p2	NM_001166710|Vmn1r7|434016|vomeronasal 1 receptor 7
mm9_v1_chr2_-_4985090_4985137	0.328903	bHLH_family.p2	AY071834|Optn|71648|optineurin
mm9_v1_chr13_+_36209279_36209279	0.328078	bHLH_family.p2	NM_001039189|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	NM_024274|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr8_+_114062242_114062242	0.327827	bHLH_family.p2	NM_001168623|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr9_+_123387818_123387943	0.327468	bHLH_family.p2	NM_013860|Limd1|29806|LIM domains containing 1	AJ132409|Limd1|29806|LIM domains containing 1	AK047198|Limd1|29806|LIM domains containing 1	BC023371|Limd1|29806|LIM domains containing 1	AK083970|Limd1|29806|LIM domains containing 1	BC056449|Limd1|29806|LIM domains containing 1
mm9_v1_chr5_-_135539929_135539990	0.326997	bHLH_family.p2	BC093484|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AF412035|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK003386|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK011005|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK151986|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	NM_025375|Wbscr22|66138|Williams Beuren syndrome chromosome region 22
mm9_v1_chr6_+_57354359_57354457	0.326996	bHLH_family.p2	BC125351|Vmn1r19|171200|vomeronasal 1 receptor 19	BC132235|Vmn1r19|171200|vomeronasal 1 receptor 19	NM_134182|Vmn1r19|171200|vomeronasal 1 receptor 19
mm9_v1_chr15_+_38148957_38148957	0.326137	bHLH_family.p2	BC145758|Odf1|18285|outer dense fiber of sperm tails 1	EU791469|Odf1|18285|outer dense fiber of sperm tails 1	NM_008757|Odf1|18285|outer dense fiber of sperm tails 1	X79446|Odf1|18285|outer dense fiber of sperm tails 1
mm9_v1_chr19_-_46747463_46747489	0.325799	bHLH_family.p2	BC064793|Cyp17a1|13074|cytochrome P450, family 17, subfamily a, polypeptide 1	NM_007809|Cyp17a1|13074|cytochrome P450, family 17, subfamily a, polypeptide 1
mm9_v1_chr7_+_133839443_133839523	0.325572	bHLH_family.p2	BC061197|Bola2|66162|bolA-like 2 (E. coli)	BC045523|Bola2|66162|bolA-like 2 (E. coli)	AK028165|Bola2|66162|bolA-like 2 (E. coli)	AK002662|Bola2|66162|bolA-like 2 (E. coli)	AK003922|Bola2|66162|bolA-like 2 (E. coli)	NM_175103|Bola2|66162|bolA-like 2 (E. coli)	AK140279|Bola2|66162|bolA-like 2 (E. coli)
mm9_v1_chr6_+_56935288_56935335	0.324539	bHLH_family.p2	BC138068|Vmn1r5|171192|vomeronasal 1 receptor 5	BC138069|Vmn1r5|171192|vomeronasal 1 receptor 5	NM_134174|Vmn1r5|171192|vomeronasal 1 receptor 5
mm9_v1_chr11_+_114713196_114713368	0.322678	bHLH_family.p2	NM_147217|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C	BC031439|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr16_+_35541447_35541447	0.322446	bHLH_family.p2	BC052397|Sema5b|20357|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	NM_013661|Sema5b|20357|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
mm9_v1_chr9_+_123276047_123276053	0.32209	bHLH_family.p2	AK032695|Lars2|102436|leucyl-tRNA synthetase, mitochondrial
mm9_v1_chr2_-_112208115_112208198	0.321275	bHLH_family.p2	AK167745|Tmem85|68032|transmembrane protein 85	BC051926|Tmem85|68032|transmembrane protein 85	AK003668|Tmem85|68032|transmembrane protein 85	AK012047|Tmem85|68032|transmembrane protein 85	AK078165|Tmem85|68032|transmembrane protein 85	NM_026519|Tmem85|68032|transmembrane protein 85
mm9_v1_chr1_+_171899520_171899582	0.320593	bHLH_family.p2	AK014177|3110045C21Rik|67303|RIKEN cDNA 3110045C21 gene	AK014032|3110045C21Rik|67303|RIKEN cDNA 3110045C21 gene
mm9_v1_chr10_-_58684594_58684594	0.319993	bHLH_family.p2	AK076569|Sept10|103080|septin 10	NM_001024910|Sept10|103080|septin 10	NM_001024911|Sept10|103080|septin 10
mm9_v1_chr5_+_124990703_124991022	0.319765	bHLH_family.p2	BC131977|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC138294|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC083140|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	NM_019770|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK089965|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AB025218|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK179651|Tmed2|56334|transmembrane emp24 domain trafficking protein 2
mm9_v1_chr2_+_180460024_180460083	0.318774	bHLH_family.p2	NM_183161|Slc17a9|228993|solute carrier family 17, member 9	BC019537|Slc17a9|228993|solute carrier family 17, member 9
mm9_v1_chr5_+_33715497_33715611	0.318577	bHLH_family.p2	
mm9_v1_chr1_+_181598319_181598619	0.317621	bHLH_family.p2	AK086448|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK046033|Sccpdh|109232|saccharopine dehydrogenase (putative)	NM_178653|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK086632|Sccpdh|109232|saccharopine dehydrogenase (putative)	BC025803|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK046468|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK145399|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK081021|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK077695|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK050554|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK166018|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK042919|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK082803|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK182882|Sccpdh|109232|saccharopine dehydrogenase (putative)	AK215316|Sccpdh|109232|saccharopine dehydrogenase (putative)
mm9_v1_chr7_-_133643662_133643692	0.317512	bHLH_family.p2	BC043451|Atxn2l|233871|ataxin 2-like
mm9_v1_chr14_+_21871781_21871860	0.317229	bHLH_family.p2	AK009508|Adk|11534|adenosine kinase	AK157662|Adk|11534|adenosine kinase	AK028100|Adk|11534|adenosine kinase	AK139200|Adk|11534|adenosine kinase	AK032871|Adk|11534|adenosine kinase	BC009659|Adk|11534|adenosine kinase	NM_134079|Adk|11534|adenosine kinase	AY540996|Adk|11534|adenosine kinase
mm9_v1_chr11_-_3831515_3831585	0.316797	bHLH_family.p2	AK197212|Tcn2|21452|transcobalamin 2	AF090686|Tcn2|21452|transcobalamin 2
mm9_v1_chr12_-_93024875_93024875	0.316451	bHLH_family.p2	AK036612|Ston2|108800|stonin 2	NM_175367|Ston2|108800|stonin 2
mm9_v1_chr4_+_148178500_148178594	0.315718	bHLH_family.p2	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr2_-_77118632_77118710	0.315482	bHLH_family.p2	BC013245|Sestd1|228071|SEC14 and spectrin domains 1	AK047939|Sestd1|228071|SEC14 and spectrin domains 1	BC044853|Sestd1|228071|SEC14 and spectrin domains 1	NM_175465|Sestd1|228071|SEC14 and spectrin domains 1
mm9_v1_chr8_+_112790866_112790890	0.314323	bHLH_family.p2	AK043971|Hydin|244653|hydrocephalus inducing	AY173049|Hydin|244653|hydrocephalus inducing	NM_172916|Hydin|244653|hydrocephalus inducing	AK142981|Hydin|244653|hydrocephalus inducing
mm9_v1_chr6_-_40949477_40949477	0.314043	bHLH_family.p2	NM_001102660|Gm2663|100040208|predicted gene 2663
mm9_v1_chr11_-_118902163_118902213	0.313598	bHLH_family.p2	AB221673|Cbx8|30951|chromobox homolog 8 (Drosophila Pc class)	BC014815|Cbx8|30951|chromobox homolog 8 (Drosophila Pc class)
mm9_v1_chr1_+_87942842_87942846	0.312535	bHLH_family.p2	AK013367|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene
mm9_v1_chr9_+_82723410_82723412	0.31237	bHLH_family.p2	AK020170|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	NM_001168240|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	NM_022986|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr3_+_89032973_89033027	0.311881	bHLH_family.p2	NM_013605|Muc1|17829|mucin 1, transmembrane	BC005441|Muc1|17829|mucin 1, transmembrane	M84683|Muc1|17829|mucin 1, transmembrane
mm9_v1_chr19_-_4009363_4009461	0.311575	bHLH_family.p2	AK178320|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK187850|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK189786|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK209435|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK210493|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK218408|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr3_-_88356772_88356884	0.311172	bHLH_family.p2	AJ277386|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK019006|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	BC031816|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	NM_031248|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK008126|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK008185|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	AK008395|Lamtor2|83409|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
mm9_v1_chr2_+_115407409_115407515	0.311012	bHLH_family.p2	NM_001145898|BC052040|399568|cDNA sequence BC052040	NM_207264|BC052040|399568|cDNA sequence BC052040	BC052040|BC052040|399568|cDNA sequence BC052040	AK154260|BC052040|399568|cDNA sequence BC052040	AK167625|BC052040|399568|cDNA sequence BC052040	AK090080|BC052040|399568|cDNA sequence BC052040
mm9_v1_chr5_-_137462712_137462731	0.310837	bHLH_family.p2	BC026751|Znhit1|70103|zinc finger, HIT domain containing 1
mm9_v1_chr7_-_133709900_133709929	0.310746	bHLH_family.p2	BC025032|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK013160|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK009925|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK088076|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK166743|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C
mm9_v1_chr2_-_11423673_11423729	0.310721	bHLH_family.p2	BC052400|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK054285|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177752|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177753|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177754|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177755|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177756|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177757|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_133232|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr5_-_124804538_124804560	0.310253	bHLH_family.p2	BC103772|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr8_-_97958656_97958727	0.310028	bHLH_family.p2	BC092397|Gtl3|14894|gene trap locus 3	BC119023|Gtl3|14894|gene trap locus 3	BC119025|Gtl3|14894|gene trap locus 3	BC144770|Gtl3|14894|gene trap locus 3	AK088713|Gtl3|14894|gene trap locus 3	Z54179|Gtl3|14894|gene trap locus 3	AK011217|Gtl3|14894|gene trap locus 3
mm9_v1_chr15_-_75844738_75844807	0.310021	bHLH_family.p2	BC117947|Fam83h|105732|family with sequence similarity 83, member H	BC117948|Fam83h|105732|family with sequence similarity 83, member H	AK035531|Fam83h|105732|family with sequence similarity 83, member H	NM_134087|Fam83h|105732|family with sequence similarity 83, member H
mm9_v1_chr10_+_79612410_79612424	0.30917	bHLH_family.p2	AK154535|Midn|59090|midnolin
mm9_v1_chr5_-_136606906_136606948	0.308474	bHLH_family.p2	AK207344|Lrwd1|71735|leucine-rich repeats and WD repeat domain containing 1	AK210612|Lrwd1|71735|leucine-rich repeats and WD repeat domain containing 1	AK178976|Lrwd1|71735|leucine-rich repeats and WD repeat domain containing 1	AK187635|Lrwd1|71735|leucine-rich repeats and WD repeat domain containing 1
mm9_v1_chr4_+_11685359_11685407	0.308382	bHLH_family.p2	D87912|Cdh17|12557|cadherin 17	AK171733|Cdh17|12557|cadherin 17	BC042891|Cdh17|12557|cadherin 17	AF177669|Cdh17|12557|cadherin 17
mm9_v1_chr2_+_173485260_173485380	0.307792	bHLH_family.p2	AK147619|Rab22a|19334|RAB22A, member RAS oncogene family	AK150617|Rab22a|19334|RAB22A, member RAS oncogene family	AK146594|Rab22a|19334|RAB22A, member RAS oncogene family	NM_024436|Rab22a|19334|RAB22A, member RAS oncogene family	AK021398|Rab22a|19334|RAB22A, member RAS oncogene family	AK149200|Rab22a|19334|RAB22A, member RAS oncogene family	BC006596|Rab22a|19334|RAB22A, member RAS oncogene family	AK014407|Rab22a|19334|RAB22A, member RAS oncogene family	AK031667|Rab22a|19334|RAB22A, member RAS oncogene family
mm9_v1_chr11_-_33893151_33893192	0.307436	bHLH_family.p2	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr4_-_43783879_43783880	0.307417	bHLH_family.p2	BC113135|Olfr159|29849|olfactory receptor 159	BC134348|Olfr159|29849|olfactory receptor 159	NM_019476|Olfr159|29849|olfactory receptor 159
mm9_v1_chr6_-_148844647_148844709	0.306279	bHLH_family.p2	BC125373|Caprin2|232560|caprin family member 2	BC125375|Caprin2|232560|caprin family member 2	NM_181541|Caprin2|232560|caprin family member 2	AK129460|Caprin2|232560|caprin family member 2	BC025636|Caprin2|232560|caprin family member 2
mm9_v1_chr7_+_73254341_73254400	0.305022	bHLH_family.p2	AK129255|Chsy1|269941|chondroitin sulfate synthase 1	BC128567|Chsy1|269941|chondroitin sulfate synthase 1	BC153826|Chsy1|269941|chondroitin sulfate synthase 1	BC153827|Chsy1|269941|chondroitin sulfate synthase 1	NM_001081163|Chsy1|269941|chondroitin sulfate synthase 1
mm9_v1_chr3_-_88715949_88715995	0.304885	bHLH_family.p2	AK134001|Msto1|229524|misato homolog 1 (Drosophila)
mm9_v1_chr15_+_73555336_73555359	0.304366	bHLH_family.p2	BC066043|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_001166388|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr5_+_31252402_31252480	0.303233	bHLH_family.p2	AF189764|Abhd1|57742|abhydrolase domain containing 1	AK156413|Abhd1|57742|abhydrolase domain containing 1	AK162873|Abhd1|57742|abhydrolase domain containing 1	BC013505|Abhd1|57742|abhydrolase domain containing 1	NM_021304|Abhd1|57742|abhydrolase domain containing 1
mm9_v1_chr9_+_57981881_57981881	0.303184	bHLH_family.p2	NM_001162476|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chr17_-_51318604_51318627	0.30284	bHLH_family.p2	AK163366|Tbc1d5|72238|TBC1 domain family, member 5	AK038013|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr1_-_171899306_171899335	0.301185	bHLH_family.p2	Y15733|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	AK077914|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	NM_010476|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7
mm9_v1_chr9_+_46037941_46037964	0.300296	bHLH_family.p2	
mm9_v1_chr3_-_83844042_83844096	0.30016	bHLH_family.p2	AY662647|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK053888|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK051240|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK137619|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	BC062940|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK052409|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK153996|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK154818|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	NM_172681|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene	AK086232|D930015E06Rik|229473|RIKEN cDNA D930015E06 gene
mm9_v1_chr11_+_75281563_75281593	0.299946	bHLH_family.p2	BC021945|Tlcd2|380712|TLC domain containing 2	NM_027249|Tlcd2|380712|TLC domain containing 2	AK008522|Tlcd2|380712|TLC domain containing 2
mm9_v1_chr6_-_97437749_97437990	0.298524	bHLH_family.p2	AK143978|Frmd4b|232288|FERM domain containing 4B	AF327856|Frmd4b|232288|FERM domain containing 4B
mm9_v1_chr1_+_154613692_154613762	0.298183	bHLH_family.p2	AK159407|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK017985|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr18_-_61371233_61371266	0.297471	bHLH_family.p2	AK052942|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	NM_007885|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2
mm9_v1_chr7_+_87343308_87343334	0.297426	bHLH_family.p2	AK134973|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr1_-_75475320_75475722	0.296894	bHLH_family.p2	AK160734|Chpf|74241|chondroitin polymerizing factor	AK177663|Chpf|74241|chondroitin polymerizing factor	AK187637|Chpf|74241|chondroitin polymerizing factor	AK190649|Chpf|74241|chondroitin polymerizing factor	BC030889|Chpf|74241|chondroitin polymerizing factor	AK006466|Chpf|74241|chondroitin polymerizing factor	AK155424|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr11_+_96143218_96143218	0.296785	bHLH_family.p2	NM_010461|Hoxb8|15416|homeobox B8	X13721|Hoxb8|15416|homeobox B8
mm9_v1_chr11_-_3831963_3832085	0.296133	bHLH_family.p2	AK143761|Tcn2|21452|transcobalamin 2	NM_001130459|Tcn2|21452|transcobalamin 2	AK161618|Tcn2|21452|transcobalamin 2	AK147176|Tcn2|21452|transcobalamin 2	AK133707|Tcn2|21452|transcobalamin 2	NM_015749|Tcn2|21452|transcobalamin 2	AK170401|Tcn2|21452|transcobalamin 2	NM_001130458|Tcn2|21452|transcobalamin 2
mm9_v1_chr14_+_58691522_58691522	0.295964	bHLH_family.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr4_+_137860641_137860679	0.295923	bHLH_family.p2	D89063|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	BC068132|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	NM_007838|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase
mm9_v1_chr2_+_103264278_103264282	0.29552	bHLH_family.p2	BC012424|Elf5|13711|E74-like factor 5	BC021629|Elf5|13711|E74-like factor 5
mm9_v1_chr16_-_43889756_43889795	0.295315	bHLH_family.p2	BC083089|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1	BC017628|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1	AK014045|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1	NM_029128|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1
mm9_v1_chr6_+_18816317_18816373	0.294737	bHLH_family.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chr8_+_3665753_3665761	0.29466	bHLH_family.p2	AK007679|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	AK087121|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	AK036449|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene	NM_026985|1810033B17Rik|69189|RIKEN cDNA 1810033B17 gene
mm9_v1_chr2_-_165710128_165710217	0.29463	bHLH_family.p2	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chrX_-_20527674_20527737	0.294139	bHLH_family.p2	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr4_+_135411923_135412023	0.293591	bHLH_family.p2	NM_001080387|Srsf10|14105|serine/arginine-rich splicing factor 10	NM_010178|Srsf10|14105|serine/arginine-rich splicing factor 10	AK134076|Srsf10|14105|serine/arginine-rich splicing factor 10	AK134289|Srsf10|14105|serine/arginine-rich splicing factor 10
mm9_v1_chr17_+_33980030_33980035	0.29343	bHLH_family.p2	AK078151|Cd320|54219|CD320 antigen	AK088189|Cd320|54219|CD320 antigen	NM_019421|Cd320|54219|CD320 antigen
mm9_v1_chr9_+_123276054_123276170	0.293312	bHLH_family.p2	AK037012|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	AJ428066|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	NM_153168|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	AK053667|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC053916|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC138206|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC145982|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC111892|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC112412|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	AK045640|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC080303|Lars2|102436|leucyl-tRNA synthetase, mitochondrial
mm9_v1_chr1_-_80210403_80210518	0.293196	bHLH_family.p2	BC150872|Fam124b|241128|family with sequence similarity 124, member B	AK043867|Fam124b|241128|family with sequence similarity 124, member B	NM_173425|Fam124b|241128|family with sequence similarity 124, member B
mm9_v1_chr9_+_123428782_123429096	0.291332	bHLH_family.p2	AK212865|Limd1|29806|LIM domains containing 1	AK218834|Limd1|29806|LIM domains containing 1	AK213065|Limd1|29806|LIM domains containing 1	AK214169|Limd1|29806|LIM domains containing 1	AK211030|Limd1|29806|LIM domains containing 1
mm9_v1_chr13_-_34027874_34027951	0.291273	bHLH_family.p2	NM_001164117|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	NM_001164118|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	NM_009254|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm9_v1_chr12_+_72212414_72212430	0.290519	bHLH_family.p2	BC048520|Tomm20l|75266|translocase of outer mitochondrial membrane 20 homolog (yeast)-like	NM_029227|Tomm20l|75266|translocase of outer mitochondrial membrane 20 homolog (yeast)-like	AK016101|Tomm20l|75266|translocase of outer mitochondrial membrane 20 homolog (yeast)-like
mm9_v1_chr5_+_122161617_122161617	0.290316	bHLH_family.p2	AF041472|Atxn2|20239|ataxin 2	NM_009125|Atxn2|20239|ataxin 2
mm9_v1_chr11_+_120645722_120645897	0.290288	bHLH_family.p2	BC003350|Gps1|209318|G protein pathway suppressor 1	NM_145370|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr1_-_53009546_53009683	0.289694	bHLH_family.p2	AK010944|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	AK010796|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	NM_144953|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene
mm9_v1_chr16_+_17797405_17797532	0.289079	bHLH_family.p2	AB024432|Scarf2|224024|scavenger receptor class F, member 2	AK142378|Scarf2|224024|scavenger receptor class F, member 2	BC139758|Scarf2|224024|scavenger receptor class F, member 2	BC059226|Scarf2|224024|scavenger receptor class F, member 2	BC060084|Scarf2|224024|scavenger receptor class F, member 2	AK143208|Scarf2|224024|scavenger receptor class F, member 2
mm9_v1_chr8_+_123651584_123651584	0.288641	bHLH_family.p2	NM_008024|Foxl1|14241|forkhead box L1
mm9_v1_chr1_+_99666744_99666792	0.288288	bHLH_family.p2	AK014287|Gin1|252876|gypsy retrotransposon integrase 1	AK018404|Gin1|252876|gypsy retrotransposon integrase 1	NM_026250|Gin1|252876|gypsy retrotransposon integrase 1	AK090002|Gin1|252876|gypsy retrotransposon integrase 1	AK015243|Gin1|252876|gypsy retrotransposon integrase 1	AK169361|Gin1|252876|gypsy retrotransposon integrase 1
mm9_v1_chr8_-_88079169_88079179	0.288148	bHLH_family.p2	NM_019794|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr9_-_44226073_44226112	0.28788	bHLH_family.p2	BC096560|Ccdc84|382073|coiled-coil domain containing 84	BC055929|Ccdc84|382073|coiled-coil domain containing 84	NM_201372|Ccdc84|382073|coiled-coil domain containing 84	AK171754|Ccdc84|382073|coiled-coil domain containing 84	AK052757|Ccdc84|382073|coiled-coil domain containing 84	BC116877|Ccdc84|382073|coiled-coil domain containing 84	BC116879|Ccdc84|382073|coiled-coil domain containing 84	BC144712|Ccdc84|382073|coiled-coil domain containing 84	BC144713|Ccdc84|382073|coiled-coil domain containing 84
mm9_v1_chr12_-_82881995_82882183	0.287677	bHLH_family.p2	AK053843|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	AK155677|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	NM_001174107|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	NM_177395|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9
mm9_v1_chr4_-_140634151_140634281	0.287506	bHLH_family.p2	AK197123|Necap2|66147|NECAP endocytosis associated 2	AK213029|Necap2|66147|NECAP endocytosis associated 2	AK218572|Necap2|66147|NECAP endocytosis associated 2	AK003463|Necap2|66147|NECAP endocytosis associated 2	AK172538|Necap2|66147|NECAP endocytosis associated 2	AK156566|Necap2|66147|NECAP endocytosis associated 2	AK170987|Necap2|66147|NECAP endocytosis associated 2	AK145874|Necap2|66147|NECAP endocytosis associated 2	AK155871|Necap2|66147|NECAP endocytosis associated 2	BC037069|Necap2|66147|NECAP endocytosis associated 2	NM_025383|Necap2|66147|NECAP endocytosis associated 2
mm9_v1_chr3_-_84024766_84024812	0.287339	bHLH_family.p2	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr9_+_120036902_120036929	0.287225	bHLH_family.p2	AK010985|Rpsa|16785|ribosomal protein SA	AK011041|Rpsa|16785|ribosomal protein SA	AK011043|Rpsa|16785|ribosomal protein SA	AK135488|Rpsa|16785|ribosomal protein SA	AK166874|Rpsa|16785|ribosomal protein SA	AK010423|Rpsa|16785|ribosomal protein SA	AK134224|Rpsa|16785|ribosomal protein SA	AK165219|Rpsa|16785|ribosomal protein SA	AK167132|Rpsa|16785|ribosomal protein SA	AK082935|Rpsa|16785|ribosomal protein SA	AK151123|Rpsa|16785|ribosomal protein SA	AK160551|Rpsa|16785|ribosomal protein SA	AK160625|Rpsa|16785|ribosomal protein SA	AK166697|Rpsa|16785|ribosomal protein SA	AK088954|Rpsa|16785|ribosomal protein SA	AK145713|Rpsa|16785|ribosomal protein SA	J02870|Rpsa|16785|ribosomal protein SA	X06406|Rpsa|16785|ribosomal protein SA	AF140348|Rpsa|16785|ribosomal protein SA	BC092041|Rpsa|16785|ribosomal protein SA	BC099601|Rpsa|16785|ribosomal protein SA	BC110285|Rpsa|16785|ribosomal protein SA	BC003829|Rpsa|16785|ribosomal protein SA	BC084677|Rpsa|16785|ribosomal protein SA	BC094902|Rpsa|16785|ribosomal protein SA
mm9_v1_chr14_+_79601537_79601578	0.286488	bHLH_family.p2	
mm9_v1_chr4_-_107704544_107704694	0.285993	bHLH_family.p2	BC052487|Podn|242608|podocan	AK034987|Podn|242608|podocan	AK161018|Podn|242608|podocan	AY313606|Podn|242608|podocan	NM_172874|Podn|242608|podocan
mm9_v1_chr18_-_38369326_38369415	0.285963	bHLH_family.p2	AY861431|Pcdh1|75599|protocadherin 1	BC040402|Pcdh1|75599|protocadherin 1	NM_029357|Pcdh1|75599|protocadherin 1
mm9_v1_chr8_+_73224288_73224388	0.285251	bHLH_family.p2	AK131827|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr9_-_107507732_107507851	0.284584	bHLH_family.p2	NM_009153|Sema3b|20347|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	X85990|Sema3b|20347|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	AK014333|Sema3b|20347|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm9_v1_chr19_-_6996189_6996331	0.284444	bHLH_family.p2	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr6_+_124520447_124520453	0.284442	bHLH_family.p2	AF459018|C1rb|667277|complement component 1, r subcomponent B	NM_001113356|C1rb|667277|complement component 1, r subcomponent B
mm9_v1_chr2_+_152119607_152119757	0.284425	bHLH_family.p2	AK076124|Tbc1d20|67231|TBC1 domain family, member 20	NM_024196|Tbc1d20|67231|TBC1 domain family, member 20	AK168985|Tbc1d20|67231|TBC1 domain family, member 20	AK006877|Tbc1d20|67231|TBC1 domain family, member 20	AK085702|Tbc1d20|67231|TBC1 domain family, member 20	AK158274|Tbc1d20|67231|TBC1 domain family, member 20	AK082369|Tbc1d20|67231|TBC1 domain family, member 20	AK172349|Tbc1d20|67231|TBC1 domain family, member 20	BC086617|Tbc1d20|67231|TBC1 domain family, member 20	BC040089|Tbc1d20|67231|TBC1 domain family, member 20	AK036751|Tbc1d20|67231|TBC1 domain family, member 20	AK188394|Tbc1d20|67231|TBC1 domain family, member 20
mm9_v1_chr12_-_40949738_40949775	0.284297	bHLH_family.p2	BC037013|Ifrd1|15982|interferon-related developmental regulator 1	BC043723|Ifrd1|15982|interferon-related developmental regulator 1	X17400|Ifrd1|15982|interferon-related developmental regulator 1	AK077790|Ifrd1|15982|interferon-related developmental regulator 1	AK078888|Ifrd1|15982|interferon-related developmental regulator 1	AK168682|Ifrd1|15982|interferon-related developmental regulator 1	NM_013562|Ifrd1|15982|interferon-related developmental regulator 1
mm9_v1_chr4_+_107640938_107641047	0.283927	bHLH_family.p2	BC030400|Slc1a7|242607|solute carrier family 1 (glutamate transporter), member 7	NM_146255|Slc1a7|242607|solute carrier family 1 (glutamate transporter), member 7	AK044671|Slc1a7|242607|solute carrier family 1 (glutamate transporter), member 7	AK044586|Slc1a7|242607|solute carrier family 1 (glutamate transporter), member 7
mm9_v1_chr6_+_83004642_83004658	0.283367	bHLH_family.p2	AK154707|Aup1|11993|ancient ubiquitous protein 1	NM_007517|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr5_-_124804519_124804530	0.283357	bHLH_family.p2	BC147052|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	BC147053|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr19_+_45635070_45635130	0.283245	bHLH_family.p2	BC027559|Dpcd|226162|deleted in primary ciliary dyskinesia	AK077347|Dpcd|226162|deleted in primary ciliary dyskinesia	NM_172639|Dpcd|226162|deleted in primary ciliary dyskinesia
mm9_v1_chr11_+_70265445_70265464	0.282735	bHLH_family.p2	AK003984|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)
mm9_v1_chr2_+_12845664_12845700	0.282024	bHLH_family.p2	NM_008961|Pter|19212|phosphotriesterase related
mm9_v1_chr1_+_44200032_44200079	0.281837	bHLH_family.p2	AK088931|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chr5_+_122550987_122550996	0.281801	bHLH_family.p2	AK146674|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	BC061144|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	AK002367|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	NM_010861|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow	M91602|Myl2|17906|myosin, light polypeptide 2, regulatory, cardiac, slow
mm9_v1_chr4_-_104548965_104549005	0.28034	bHLH_family.p2	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr6_-_127075853_127076093	0.280097	bHLH_family.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr6_+_56985906_56985906	0.280028	bHLH_family.p2	AF394951|Vmn1r8|171205|vomeronasal 1 receptor 8	NM_134187|Vmn1r8|171205|vomeronasal 1 receptor 8
mm9_v1_chr10_+_42547705_42547741	0.27995	bHLH_family.p2	AK180295|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr1_-_174825067_174825072	0.279937	bHLH_family.p2	AK144248|Apcs|20219|serum amyloid P-component	AK165699|Apcs|20219|serum amyloid P-component
mm9_v1_chr17_+_33980039_33980123	0.279601	bHLH_family.p2	AK140204|Cd320|54219|CD320 antigen	AK021187|Cd320|54219|CD320 antigen	BC026888|Cd320|54219|CD320 antigen
mm9_v1_chr3_+_68495345_68495448	0.279595	bHLH_family.p2	M86672|Il12a|16159|interleukin 12a	NM_008351|Il12a|16159|interleukin 12a	BC116851|Il12a|16159|interleukin 12a	BC116855|Il12a|16159|interleukin 12a	AF128210|Il12a|16159|interleukin 12a	AF128211|Il12a|16159|interleukin 12a	AF128212|Il12a|16159|interleukin 12a	AF128213|Il12a|16159|interleukin 12a
mm9_v1_chr9_+_44205157_44205205	0.279442	bHLH_family.p2	AK040077|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AK155339|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr2_-_119488522_119488567	0.279364	bHLH_family.p2	AK010328|Ndufaf1|69702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	AK050343|Ndufaf1|69702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	NM_027175|Ndufaf1|69702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	BC018422|Ndufaf1|69702|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1
mm9_v1_chr17_+_36016728_36016783	0.279285	bHLH_family.p2	BC009147|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16	BC046781|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16	BC138204|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16	BC138205|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm9_v1_chr4_+_47366162_47366183	0.279253	bHLH_family.p2	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr1_+_132723277_132723356	0.278695	bHLH_family.p2	BC013556|Pigr|18703|polymeric immunoglobulin receptor	U06431|Pigr|18703|polymeric immunoglobulin receptor
mm9_v1_chrX_-_131285919_131285957	0.278262	bHLH_family.p2	BC027264|Armcx6|278097|armadillo repeat containing, X-linked 6	AK148507|Armcx6|278097|armadillo repeat containing, X-linked 6	AK160766|Armcx6|278097|armadillo repeat containing, X-linked 6	NM_001007578|Armcx6|278097|armadillo repeat containing, X-linked 6
mm9_v1_chr11_+_70376359_70376411	0.27782	bHLH_family.p2	NM_001045959|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_001045964|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_016713|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_176893|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB035697|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB041925|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr1_-_179573073_179573142	0.27748	bHLH_family.p2	AK009784|2310043L19Rik|75589|RIKEN cDNA 2310043L19 gene
mm9_v1_chr10_-_126725826_126725958	0.277361	bHLH_family.p2	BC059015|Mbd6|110962|methyl-CpG binding domain protein 6	NM_033072|Mbd6|110962|methyl-CpG binding domain protein 6	AK158797|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr12_+_80309899_80309933	0.276965	bHLH_family.p2	AK164157|Rdh12|77974|retinol dehydrogenase 12	AK039233|Rdh12|77974|retinol dehydrogenase 12	NM_030017|Rdh12|77974|retinol dehydrogenase 12	AK020927|Rdh12|77974|retinol dehydrogenase 12	BC016204|Rdh12|77974|retinol dehydrogenase 12	BC067213|Rdh12|77974|retinol dehydrogenase 12
mm9_v1_chr7_-_133935662_133935720	0.27689	bHLH_family.p2	AK144244|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr11_-_72303293_72303434	0.276575	bHLH_family.p2	AB441166|Spns2|216892|spinster homolog 2 (Drosophila)	NM_153060|Spns2|216892|spinster homolog 2 (Drosophila)	BC011467|Spns2|216892|spinster homolog 2 (Drosophila)
mm9_v1_chr6_+_30351871_30351895	0.276484	bHLH_family.p2	AK085116|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr1_-_45982242_45982463	0.276384	bHLH_family.p2	AK008700|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF231120|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF215637|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF226613|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	BC003438|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK159855|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK144780|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK147137|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK159294|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK167608|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	NM_016917|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK033987|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1
mm9_v1_chr12_-_106460915_106460946	0.276348	bHLH_family.p2	BC052336|Tcl1|21432|T-cell lymphoma breakpoint 1	AF031956|Tcl1|21432|T-cell lymphoma breakpoint 1	Y15376|Tcl1|21432|T-cell lymphoma breakpoint 1	AK149361|Tcl1|21432|T-cell lymphoma breakpoint 1	AK163387|Tcl1|21432|T-cell lymphoma breakpoint 1	NM_009337|Tcl1|21432|T-cell lymphoma breakpoint 1
mm9_v1_chr15_-_79158683_79158800	0.276068	bHLH_family.p2	NM_001199023|Pla2g6|53357|phospholipase A2, group VI	NM_001199024|Pla2g6|53357|phospholipase A2, group VI	NM_001199025|Pla2g6|53357|phospholipase A2, group VI	NM_016915|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr2_+_31742800_31742863	0.275657	bHLH_family.p2	BC096366|Lamc3|23928|laminin gamma 3	NM_011836|Lamc3|23928|laminin gamma 3	AF079520|Lamc3|23928|laminin gamma 3	AF083372|Lamc3|23928|laminin gamma 3
mm9_v1_chr8_-_123158281_123158309	0.275507	bHLH_family.p2	BC027666|1190005I06Rik|68918|RIKEN cDNA 1190005I06 gene	NM_197988|1190005I06Rik|68918|RIKEN cDNA 1190005I06 gene
mm9_v1_chr2_+_27020999_27021026	0.275213	bHLH_family.p2	BC141022|Dbh|13166|dopamine beta hydroxylase	BC171949|Dbh|13166|dopamine beta hydroxylase	AK132245|Dbh|13166|dopamine beta hydroxylase	NM_138942|Dbh|13166|dopamine beta hydroxylase
mm9_v1_chr6_+_48986501_48986620	0.274852	bHLH_family.p2	NM_053110|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171517|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK149740|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK154617|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159270|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159165|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK170506|Gpnmb|93695|glycoprotein (transmembrane) nmb
mm9_v1_chr12_+_111976211_111976241	0.272865	bHLH_family.p2	AK052481|Wdr20a|69641|WD repeat domain 20A	BC026761|Wdr20a|69641|WD repeat domain 20A	BC027497|Wdr20a|69641|WD repeat domain 20A	AK145389|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr16_+_18348311_18348366	0.272013	bHLH_family.p2	BC052393|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	BC056980|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	NM_033474|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm9_v1_chr11_-_59104252_59104253	0.271874	bHLH_family.p2	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr17_+_35051410_35051424	0.271364	bHLH_family.p2	AK164684|Slc44a4|70129|solute carrier family 44, member 4	NM_023557|Slc44a4|70129|solute carrier family 44, member 4	AK145621|Slc44a4|70129|solute carrier family 44, member 4	BC010808|Slc44a4|70129|solute carrier family 44, member 4	BC052652|Slc44a4|70129|solute carrier family 44, member 4
mm9_v1_chr2_+_61642509_61642690	0.271232	bHLH_family.p2	BC052737|Tbr1|21375|T-box brain gene 1	NM_009322|Tbr1|21375|T-box brain gene 1	AK158835|Tbr1|21375|T-box brain gene 1	BC058399|Tbr1|21375|T-box brain gene 1	U49251|Tbr1|21375|T-box brain gene 1
mm9_v1_chr3_-_132897852_132897912	0.270579	bHLH_family.p2	BC049886|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38	NM_029953|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38	AK020284|Arhgef38|77669|ho guanine nucleotide exchange factor (GEF) 38
mm9_v1_chr3_+_79395280_79395367	0.270293	bHLH_family.p2	AK150520|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK151091|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	BC019778|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	NM_026352|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	BC011499|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK016221|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK013919|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK051597|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK003402|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)
mm9_v1_chr13_-_51662452_51662452	0.270267	bHLH_family.p2	BC103611|Shc3|20418|src homology 2 domain-containing transforming protein C3	BC103612|Shc3|20418|src homology 2 domain-containing transforming protein C3	BC105644|Shc3|20418|src homology 2 domain-containing transforming protein C3	BC105645|Shc3|20418|src homology 2 domain-containing transforming protein C3	NM_009167|Shc3|20418|src homology 2 domain-containing transforming protein C3	U46854|Shc3|20418|src homology 2 domain-containing transforming protein C3
mm9_v1_chr16_-_4213389_4213406	0.270247	bHLH_family.p2	BC072594|Crebbp|12914|CREB binding protein	NM_001025432|Crebbp|12914|CREB binding protein	BC010297|Crebbp|12914|CREB binding protein
mm9_v1_chr3_+_106288967_106288967	0.27023	bHLH_family.p2	BC008266|Dennd2d|72121|DENN/MADD domain containing 2D	NM_028110|Dennd2d|72121|DENN/MADD domain containing 2D
mm9_v1_chr3_-_108013851_108013851	0.269958	bHLH_family.p2	AK046849|Atxn7l2|72522|ataxin 7-like 2	NM_175183|Atxn7l2|72522|ataxin 7-like 2
mm9_v1_chr17_+_47641999_47642189	0.269597	bHLH_family.p2	NM_001081635|Ccnd3|12445|cyclin D3	NM_001081636|Ccnd3|12445|cyclin D3	AK161758|Ccnd3|12445|cyclin D3	AK083384|Ccnd3|12445|cyclin D3	AK020317|Ccnd3|12445|cyclin D3
mm9_v1_chr5_-_31999977_32000001	0.26957	bHLH_family.p2	BC023339|Rbks|71336|ribokinase	NM_153196|Rbks|71336|ribokinase	AK017229|Rbks|71336|ribokinase	AK138939|Rbks|71336|ribokinase
mm9_v1_chr7_-_52147628_52147748	0.269332	bHLH_family.p2	AK209813|Med25|75613|mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)	AK089940|Med25|75613|mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)	NM_029365|Med25|75613|mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)
mm9_v1_chr19_+_6984187_6984287	0.269264	bHLH_family.p2	BC087959|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)	NM_001166370|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)	NM_026306|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)	BC016191|Trmt112|67674|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
mm9_v1_chr9_-_106473296_106473326	0.268865	bHLH_family.p2	AK006688|Iqcf4|67320|IQ motif containing F4	BC061014|Iqcf4|67320|IQ motif containing F4	NM_026090|Iqcf4|67320|IQ motif containing F4	BC048652|Iqcf4|67320|IQ motif containing F4	AK007079|Iqcf4|67320|IQ motif containing F4	AK018930|Iqcf4|67320|IQ motif containing F4	DQ153246|Iqcf4|67320|IQ motif containing F4
mm9_v1_chr1_-_57463278_57463380	0.268432	bHLH_family.p2	BC099495|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC058590|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC132289|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC144765|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC144766|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	AK139666|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene
mm9_v1_chr16_+_87354429_87354497	0.268398	bHLH_family.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr15_-_103170514_103170552	0.267999	bHLH_family.p2	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr17_-_33961403_33961506	0.26752	bHLH_family.p2	U11248|Rps28|54127|ribosomal protein S28	BC010987|Rps28|54127|ribosomal protein S28	AK002919|Rps28|54127|ribosomal protein S28	BC090982|Rps28|54127|ribosomal protein S28	NM_016844|Rps28|54127|ribosomal protein S28	BC125644|Rps28|54127|ribosomal protein S28	BC125646|Rps28|54127|ribosomal protein S28
mm9_v1_chrX_-_7000037_7000113	0.267277	bHLH_family.p2	BC072610|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AF038507|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AK008437|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene
mm9_v1_chr4_-_129318264_129318285	0.266866	bHLH_family.p2	AK150240|Txlna|109658|taxilin alpha	AK161649|Txlna|109658|taxilin alpha	AK171101|Txlna|109658|taxilin alpha	AK078192|Txlna|109658|taxilin alpha
mm9_v1_chr2_-_152758906_152758943	0.266811	bHLH_family.p2	AK152669|Foxs1|14239|forkhead box S1	BC096604|Foxs1|14239|forkhead box S1	BC131937|Foxs1|14239|forkhead box S1	BC131939|Foxs1|14239|forkhead box S1	AK077935|Foxs1|14239|forkhead box S1	NM_010226|Foxs1|14239|forkhead box S1
mm9_v1_chr16_+_57121795_57121895	0.266792	bHLH_family.p2	AK145458|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC057096|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK012084|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK083586|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK150429|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	NM_138599|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK161720|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC139420|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC139421|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK169809|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK122356|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr19_-_7114388_7114515	0.266059	bHLH_family.p2	AK181280|Stip1|20867|stress-induced phosphoprotein 1	AK204291|Stip1|20867|stress-induced phosphoprotein 1	BC003794|Stip1|20867|stress-induced phosphoprotein 1	AK134171|Stip1|20867|stress-induced phosphoprotein 1	AK149493|Stip1|20867|stress-induced phosphoprotein 1	AK168181|Stip1|20867|stress-induced phosphoprotein 1	AK161645|Stip1|20867|stress-induced phosphoprotein 1	U27830|Stip1|20867|stress-induced phosphoprotein 1	AK167273|Stip1|20867|stress-induced phosphoprotein 1	AK075988|Stip1|20867|stress-induced phosphoprotein 1	AK080936|Stip1|20867|stress-induced phosphoprotein 1	AK088494|Stip1|20867|stress-induced phosphoprotein 1	NM_016737|Stip1|20867|stress-induced phosphoprotein 1
mm9_v1_chr14_+_22650727_22650812	0.265956	bHLH_family.p2	AK150504|Vdac2|22334|voltage-dependent anion channel 2	AK150627|Vdac2|22334|voltage-dependent anion channel 2	AK150940|Vdac2|22334|voltage-dependent anion channel 2	AK078555|Vdac2|22334|voltage-dependent anion channel 2	BC003731|Vdac2|22334|voltage-dependent anion channel 2	NM_011695|Vdac2|22334|voltage-dependent anion channel 2	U30838|Vdac2|22334|voltage-dependent anion channel 2	AK012359|Vdac2|22334|voltage-dependent anion channel 2	AK152274|Vdac2|22334|voltage-dependent anion channel 2	AK168328|Vdac2|22334|voltage-dependent anion channel 2	AK168199|Vdac2|22334|voltage-dependent anion channel 2
mm9_v1_chr12_+_103521355_103521400	0.26586	bHLH_family.p2	BC137907|Rin3|217835|Ras and Rab interactor 3	AK133988|Rin3|217835|Ras and Rab interactor 3	AK167187|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr19_+_11986907_11986958	0.265748	bHLH_family.p2	AK087559|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170745|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170408|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154873|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK085013|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	BC058941|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr17_-_66121883_66122091	0.26559	bHLH_family.p2	AB232617|Rab31|106572|RAB31, member RAS oncogene family	AK159095|Rab31|106572|RAB31, member RAS oncogene family	AK166151|Rab31|106572|RAB31, member RAS oncogene family	AK051270|Rab31|106572|RAB31, member RAS oncogene family	BC013063|Rab31|106572|RAB31, member RAS oncogene family	AK156677|Rab31|106572|RAB31, member RAS oncogene family	NM_133685|Rab31|106572|RAB31, member RAS oncogene family
mm9_v1_chr18_+_76401531_76401583	0.265408	bHLH_family.p2	BC021342|Smad2|17126|MAD homolog 2 (Drosophila)	AK007817|Smad2|17126|MAD homolog 2 (Drosophila)	NM_010754|Smad2|17126|MAD homolog 2 (Drosophila)
mm9_v1_chr9_-_107612805_107612805	0.264123	bHLH_family.p2	AK053632|Sema3f|20350|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	NM_011349|Sema3f|20350|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm9_v1_chr8_-_108462291_108462291	0.263836	bHLH_family.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr8_+_13037791_13037837	0.263694	bHLH_family.p2	AK149449|F10|14058|coagulation factor X	AJ222677|F10|14058|coagulation factor X	AF087644|F10|14058|coagulation factor X	CT010325|F10|14058|coagulation factor X
mm9_v1_chr8_+_107829500_107829543	0.262952	bHLH_family.p2	BC018516|Elmo3|234683|engulfment and cell motility 3, ced-12 homolog (C. elegans)	NM_172760|Elmo3|234683|engulfment and cell motility 3, ced-12 homolog (C. elegans)	AK037067|Elmo3|234683|engulfment and cell motility 3, ced-12 homolog (C. elegans)	AK157875|Elmo3|234683|engulfment and cell motility 3, ced-12 homolog (C. elegans)	BC058752|Elmo3|234683|engulfment and cell motility 3, ced-12 homolog (C. elegans)	BC138887|Elmo3|234683|engulfment and cell motility 3, ced-12 homolog (C. elegans)
mm9_v1_chr6_+_5340417_5340708	0.262536	bHLH_family.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr13_+_48758284_48758404	0.262177	bHLH_family.p2	NM_007526|Barx1|12022|BarH-like homeobox 1
mm9_v1_chr10_-_86164623_86164759	0.26211	bHLH_family.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr1_-_23109091_23109091	0.260864	bHLH_family.p2	AK016819|4933415F23Rik|66755|RIKEN cDNA 4933415F23 gene	BC115556|4933415F23Rik|66755|RIKEN cDNA 4933415F23 gene	NM_025746|4933415F23Rik|66755|RIKEN cDNA 4933415F23 gene
mm9_v1_chr17_-_50432833_50432925	0.26002	bHLH_family.p2	X95724|Dazl|13164|deleted in azoospermia-like	U46694|Dazl|13164|deleted in azoospermia-like	BC099940|Dazl|13164|deleted in azoospermia-like	AK014854|Dazl|13164|deleted in azoospermia-like	AK033183|Dazl|13164|deleted in azoospermia-like	AK033316|Dazl|13164|deleted in azoospermia-like	NM_010021|Dazl|13164|deleted in azoospermia-like
mm9_v1_chr11_-_69609411_69609422	0.259729	bHLH_family.p2	AK087554|Chrnb1|11443|cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
mm9_v1_chr14_-_56279210_56279348	0.259522	bHLH_family.p2	AF230273|Mdp1|67881|magnesium-dependent phosphatase 1	BC046613|Mdp1|67881|magnesium-dependent phosphatase 1	AK008881|Mdp1|67881|magnesium-dependent phosphatase 1	AK160438|Mdp1|67881|magnesium-dependent phosphatase 1	AK007694|Mdp1|67881|magnesium-dependent phosphatase 1	AK007319|Mdp1|67881|magnesium-dependent phosphatase 1	NM_023397|Mdp1|67881|magnesium-dependent phosphatase 1
mm9_v1_chr9_-_99610481_99610525	0.259127	bHLH_family.p2	NM_001194922|Cldn18|56492|claudin 18	NM_019815|Cldn18|56492|claudin 18
mm9_v1_chr8_+_123651742_123651861	0.258992	bHLH_family.p2	BC137805|Foxl1|14241|forkhead box L1	BC137806|Foxl1|14241|forkhead box L1	AB221616|Foxl1|14241|forkhead box L1
mm9_v1_chr13_-_93346126_93346186	0.258807	bHLH_family.p2	BC050748|Spz1|79401|spermatogenic leucine zipper 1	AK006437|Spz1|79401|spermatogenic leucine zipper 1	NM_030237|Spz1|79401|spermatogenic leucine zipper 1
mm9_v1_chr9_-_105047257_105047411	0.258051	bHLH_family.p2	FJ211595|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene	BC048436|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene	AK006953|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene	NM_028562|1700080E11Rik|73532|RIKEN cDNA 1700080E11 gene
mm9_v1_chr8_+_122386155_122386279	0.258021	bHLH_family.p2	AK164240|Klhl36|234796|kelch-like 36 (Drosophila)	AK164831|Klhl36|234796|kelch-like 36 (Drosophila)	AK157027|Klhl36|234796|kelch-like 36 (Drosophila)	BC025816|Klhl36|234796|kelch-like 36 (Drosophila)	NM_146219|Klhl36|234796|kelch-like 36 (Drosophila)	AK131135|Klhl36|234796|kelch-like 36 (Drosophila)
mm9_v1_chr15_-_55738264_55738503	0.257976	bHLH_family.p2	BC003748|Sntb1|20649|syntrophin, basic 1	U89997|Sntb1|20649|syntrophin, basic 1	NM_016667|Sntb1|20649|syntrophin, basic 1
mm9_v1_chr11_+_62389367_62389600	0.257528	bHLH_family.p2	AK171222|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2	AK162841|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr8_+_87550720_87550841	0.256647	bHLH_family.p2	BC023284|2310036O22Rik|68544|RIKEN cDNA 2310036O22 gene	BC029622|2310036O22Rik|68544|RIKEN cDNA 2310036O22 gene	NM_026760|2310036O22Rik|68544|RIKEN cDNA 2310036O22 gene	AK009653|2310036O22Rik|68544|RIKEN cDNA 2310036O22 gene	AK003299|2310036O22Rik|68544|RIKEN cDNA 2310036O22 gene
mm9_v1_chr5_+_114894288_114894354	0.256592	bHLH_family.p2	AK009261|Mvk|17855|mevalonate kinase	AK031084|Mvk|17855|mevalonate kinase	AK149630|Mvk|17855|mevalonate kinase	BC005606|Mvk|17855|mevalonate kinase	NM_023556|Mvk|17855|mevalonate kinase
mm9_v1_chr9_+_107456969_107456986	0.255773	bHLH_family.p2	BC002173|Rassf1|56289|Ras association (RalGDS/AF-6) domain family member 1	NM_019713|Rassf1|56289|Ras association (RalGDS/AF-6) domain family member 1
mm9_v1_chr11_-_11362390_11362421	0.255464	bHLH_family.p2	BC139450|Zpbp|53604|zona pellucida binding protein	BC139453|Zpbp|53604|zona pellucida binding protein	BC145628|Zpbp|53604|zona pellucida binding protein	D17569|Zpbp|53604|zona pellucida binding protein	NM_001185153|Zpbp|53604|zona pellucida binding protein	NM_015785|Zpbp|53604|zona pellucida binding protein
mm9_v1_chr8_+_107872704_107872772	0.255034	bHLH_family.p2	BC151197|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr19_+_7687030_7687100	0.254914	bHLH_family.p2	AK007015|Hrasls5|66727|HRAS-like suppressor family, member 5	AK014971|Hrasls5|66727|HRAS-like suppressor family, member 5	NM_025731|Hrasls5|66727|HRAS-like suppressor family, member 5	BC061008|Hrasls5|66727|HRAS-like suppressor family, member 5	AK006790|Hrasls5|66727|HRAS-like suppressor family, member 5	AK006527|Hrasls5|66727|HRAS-like suppressor family, member 5	AB261168|Hrasls5|66727|HRAS-like suppressor family, member 5	AB447517|Hrasls5|66727|HRAS-like suppressor family, member 5
mm9_v1_chr7_+_128061257_128061281	0.254495	bHLH_family.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr18_-_62339609_62339644	0.254412	bHLH_family.p2	BC032883|Adrb2|11555|adrenergic receptor, beta 2	NM_007420|Adrb2|11555|adrenergic receptor, beta 2	AK080241|Adrb2|11555|adrenergic receptor, beta 2	AK080276|Adrb2|11555|adrenergic receptor, beta 2
mm9_v1_chr2_+_163843744_163843775	0.254029	bHLH_family.p2	
mm9_v1_chr9_+_77602582_77602622	0.253799	bHLH_family.p2	AK160876|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	BC019374|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	NM_010295|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85414|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85498|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr11_+_70783966_70784013	0.253445	bHLH_family.p2	AK010289|Rpain|69723|RPA interacting protein	DQ810267|Rpain|69723|RPA interacting protein	DQ810268|Rpain|69723|RPA interacting protein	DQ810269|Rpain|69723|RPA interacting protein	DQ810270|Rpain|69723|RPA interacting protein	DQ810271|Rpain|69723|RPA interacting protein	DQ810272|Rpain|69723|RPA interacting protein
mm9_v1_chr10_+_62562903_62562903	0.253351	bHLH_family.p2	AF071223|Atoh7|53404|atonal homolog 7 (Drosophila)	NM_016864|Atoh7|53404|atonal homolog 7 (Drosophila)
mm9_v1_chr11_+_59021811_59021915	0.253255	bHLH_family.p2	AK012628|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	NM_024210|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	BC002181|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	AK009601|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene
mm9_v1_chr10_-_80522871_80522963	0.253085	bHLH_family.p2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr15_+_81810969_81810980	0.252952	bHLH_family.p2	AK006381|1700029P11Rik|66346|RIKEN cDNA 1700029P11 gene	AK006519|1700029P11Rik|66346|RIKEN cDNA 1700029P11 gene	AK007222|1700029P11Rik|66346|RIKEN cDNA 1700029P11 gene	NM_025503|1700029P11Rik|66346|RIKEN cDNA 1700029P11 gene	BC048460|1700029P11Rik|66346|RIKEN cDNA 1700029P11 gene
mm9_v1_chr1_-_182186373_182186388	0.25279	bHLH_family.p2	AK014706|Psen2|19165|presenilin 2	AK154119|Psen2|19165|presenilin 2
mm9_v1_chr14_+_47502637_47502773	0.252712	bHLH_family.p2	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr10_+_127196776_127196901	0.25255	bHLH_family.p2	AK136574|Rdh1|107605|retinol dehydrogenase 1 (all trans)	NM_080436|Rdh1|107605|retinol dehydrogenase 1 (all trans)	AK132181|Rdh9|103142|retinol dehydrogenase 9	AY028928|Rdh1|107605|retinol dehydrogenase 1 (all trans)	BC137930|Rdh1|107605|retinol dehydrogenase 1 (all trans)
mm9_v1_chr13_-_34027843_34027864	0.252515	bHLH_family.p2	AK169145|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	AK167295|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	AK033731|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	U25844|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	AK154700|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	BC006766|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm9_v1_chr11_-_100259048_100259060	0.252243	bHLH_family.p2	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chr6_+_106719113_106719221	0.252094	bHLH_family.p2	AK135791|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK010662|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AB063106|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK152739|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	BC031764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	NM_027296|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK011764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK166804|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK139764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1
mm9_v1_chr11_+_59120429_59120467	0.25161	bHLH_family.p2	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr7_+_134388006_134388047	0.251309	bHLH_family.p2	AK090240|Zfp771|244216|zinc finger protein 771	NM_177362|Zfp771|244216|zinc finger protein 771	AK159461|Zfp771|244216|zinc finger protein 771
mm9_v1_chr3_-_115956312_115956401	0.25092	bHLH_family.p2	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr2_-_73730605_73730700	0.250182	bHLH_family.p2	AK139844|Atf2|11909|activating transcription factor 2	AK146839|Atf2|11909|activating transcription factor 2	AK139515|Atf2|11909|activating transcription factor 2	BC079883|Atf2|11909|activating transcription factor 2	BC085137|Atf2|11909|activating transcription factor 2	BC082596|Atf2|11909|activating transcription factor 2	AK035438|Atf2|11909|activating transcription factor 2	AK140855|Atf2|11909|activating transcription factor 2	AK144977|Atf2|11909|activating transcription factor 2	AK051591|Atf2|11909|activating transcription factor 2	AK087424|Atf2|11909|activating transcription factor 2	NM_001025093|Atf2|11909|activating transcription factor 2	NM_009715|Atf2|11909|activating transcription factor 2	AK145887|Atf2|11909|activating transcription factor 2
mm9_v1_chr11_+_115891591_115891668	0.249999	bHLH_family.p2	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr7_-_86938475_86938475	0.249978	bHLH_family.p2	BC125505|Mesp1|17292|mesoderm posterior 1	BC125507|Mesp1|17292|mesoderm posterior 1	NM_008588|Mesp1|17292|mesoderm posterior 1
mm9_v1_chr8_-_113679781_113679788	0.249862	bHLH_family.p2	AK088720|Glg1|20340|golgi apparatus protein 1
mm9_v1_chr16_-_78576898_78576912	0.249113	bHLH_family.p2	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr1_+_166205728_166205836	0.249089	bHLH_family.p2	BC060044|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	NM_029115|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK076640|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK149168|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK015464|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	BC048086|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene
mm9_v1_chr18_+_42554250_42554250	0.249011	bHLH_family.p2	BC145941|Pou4f3|18998|POU domain, class 4, transcription factor 3	NM_138945|Pou4f3|18998|POU domain, class 4, transcription factor 3
mm9_v1_chr4_-_118905241_118905332	0.248692	bHLH_family.p2	AK158349|AU022252|230696|expressed sequence AU022252	AK167445|AU022252|230696|expressed sequence AU022252	BC035522|AU022252|230696|expressed sequence AU022252	AK082225|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	BC089614|AU022252|230696|expressed sequence AU022252	NM_001012400|AU022252|230696|expressed sequence AU022252
mm9_v1_chr2_+_30302648_30302832	0.248549	bHLH_family.p2	AK011735|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK208338|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK217782|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr8_-_24318788_24318925	0.248468	bHLH_family.p2	AK161270|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK077561|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK049675|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK045235|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK083589|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK169257|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK167876|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	NM_018743|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr7_+_51964112_51964152	0.248296	bHLH_family.p2	NM_029317|Izumo2|75510|IZUMO family member 2	AK006268|Izumo2|75510|IZUMO family member 2	BC048526|Izumo2|75510|IZUMO family member 2
mm9_v1_chr16_+_43890014_43890036	0.248111	bHLH_family.p2	NM_027801|2610015P09Rik|212153|RIKEN cDNA 2610015P09 gene
mm9_v1_chr4_-_131631150_131631223	0.247982	bHLH_family.p2	BC068138|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr2_-_33323966_33324113	0.247401	bHLH_family.p2	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chr2_+_65076812_65076815	0.247366	bHLH_family.p2	
mm9_v1_chr13_-_48966411_48966437	0.24697	bHLH_family.p2	AK153906|Phf2|18676|PHD finger protein 2
mm9_v1_chr13_-_58228079_58228222	0.246573	bHLH_family.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr7_-_36587975_36588025	0.246553	bHLH_family.p2	AK129283|Zfp507|668501|zinc finger protein 507	BC050041|Zfp507|668501|zinc finger protein 507	AK142141|Zfp507|668501|zinc finger protein 507	NM_177739|Zfp507|668501|zinc finger protein 507	AK172290|E130304I02Rik|78547|RIKEN cDNA E130304I02 gene
mm9_v1_chr4_-_134409149_134409155	0.24641	bHLH_family.p2	AK038972|Tmem57|66146|transmembrane protein 57	BC054769|Tmem57|66146|transmembrane protein 57
mm9_v1_chr5_-_135096716_135096886	0.24621	bHLH_family.p2	BC023337|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr5_+_98758322_98758388	0.245175	bHLH_family.p2	BC049770|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	NM_001024614|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	AK005711|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene
mm9_v1_chr2_-_118982714_118982769	0.244801	bHLH_family.p2	BC061186|Fam82a2|67809|family with sequence similarity 82, member A2	AK171770|Fam82a2|67809|family with sequence similarity 82, member A2	NM_001033136|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr9_-_21043503_21043590	0.244443	bHLH_family.p2	BC023945|Keap1|50868|kelch-like ECH-associated protein 1	AK154430|Keap1|50868|kelch-like ECH-associated protein 1	AK155507|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr15_+_12808445_12808493	0.243727	bHLH_family.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr13_+_108948931_108948987	0.243294	bHLH_family.p2	AK010576|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK013216|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK014517|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK082676|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK157175|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK157504|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	NM_028042|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK082109|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC066170|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK045333|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AK156267|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC056463|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	BC037200|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8	AJ427222|Ercc8|71991|excision repaiross-complementing rodent repair deficiency, complementation group 8
mm9_v1_chr14_-_25306261_25306271	0.24306	bHLH_family.p2	NM_001081247|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK170475|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr6_-_86347093_86347158	0.24152	bHLH_family.p2	AK049412|Pcyox1|66881|prenylcysteine oxidase 1	AK033373|Pcyox1|66881|prenylcysteine oxidase 1	AK004799|Pcyox1|66881|prenylcysteine oxidase 1	AK004840|Pcyox1|66881|prenylcysteine oxidase 1	AK031585|Pcyox1|66881|prenylcysteine oxidase 1	AK159981|Pcyox1|66881|prenylcysteine oxidase 1	AK161616|Pcyox1|66881|prenylcysteine oxidase 1	AK169209|Pcyox1|66881|prenylcysteine oxidase 1	AK145366|Pcyox1|66881|prenylcysteine oxidase 1	AK147190|Pcyox1|66881|prenylcysteine oxidase 1	BC028308|Pcyox1|66881|prenylcysteine oxidase 1	AK134528|Pcyox1|66881|prenylcysteine oxidase 1	NM_025823|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr6_+_30589440_30589446	0.241506	bHLH_family.p2	AK003088|Cpa1|109697|carboxypeptidase A1
mm9_v1_chr19_-_7008874_7009004	0.241423	bHLH_family.p2	BC119784|Kcnk4|16528|potassium channel, subfamily K, member 4	NM_008431|Kcnk4|16528|potassium channel, subfamily K, member 4
mm9_v1_chr7_+_152082435_152082493	0.2414	bHLH_family.p2	AK017829|Fgf15|14170|fibroblast growth factor 15	AF007268|Fgf15|14170|fibroblast growth factor 15	NM_008003|Fgf15|14170|fibroblast growth factor 15	BC021328|Fgf15|14170|fibroblast growth factor 15
mm9_v1_chr1_+_167718811_167718898	0.241267	bHLH_family.p2	AK138774|Cd247|12503|CD247 antigen	J04967|Cd247|12503|CD247 antigen	NM_001113391|Cd247|12503|CD247 antigen	NM_001113392|Cd247|12503|CD247 antigen	NM_001113393|Cd247|12503|CD247 antigen	NM_001113394|Cd247|12503|CD247 antigen	NM_031162|Cd247|12503|CD247 antigen	AK017904|Cd247|12503|CD247 antigen	AK088087|Cd247|12503|CD247 antigen	L03353|Cd247|12503|CD247 antigen	S51932|Cd247|12503|CD247 antigen	U56258|Cd247|12503|CD247 antigen	X84237|Cd247|12503|CD247 antigen	BC052824|Cd247|12503|CD247 antigen
mm9_v1_chrX_-_7753254_7753306	0.240558	bHLH_family.p2	BC113777|Tbc1d25|209815|TBC1 domain family, member 25	BC128565|Tbc1d25|209815|TBC1 domain family, member 25	BC128566|Tbc1d25|209815|TBC1 domain family, member 25	AK078145|Tbc1d25|209815|TBC1 domain family, member 25	NM_001166437|Tbc1d25|209815|TBC1 domain family, member 25	NM_172478|Tbc1d25|209815|TBC1 domain family, member 25
mm9_v1_chr1_-_132612309_132612397	0.240509	bHLH_family.p2	X98847|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC051014|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC018418|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	AK146744|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	NM_008825|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm9_v1_chr7_-_59271085_59271085	0.24043	bHLH_family.p2	AK005994|1700015G11Rik|75529|RIKEN cDNA 1700015G11 gene	NM_001195601|1700015G11Rik|75529|RIKEN cDNA 1700015G11 gene
mm9_v1_chr2_+_69508174_69508176	0.239673	bHLH_family.p2	AK132646|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10	NM_001081087|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10
mm9_v1_chr17_-_31649431_31649431	0.239507	bHLH_family.p2	NM_021322|Wdr4|57773|WD repeat domain 4
mm9_v1_chr9_+_89094110_89094142	0.239473	bHLH_family.p2	BC116241|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	NM_007534|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC028762|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a	AK138369|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	BC100462|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b	AK152200|Bcl2a1b|12045|B-cell leukemia/lymphoma 2 related protein A1b
mm9_v1_chr6_+_4484651_4484672	0.239285	bHLH_family.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr8_+_90661746_90661852	0.238966	bHLH_family.p2	AK047782|Heatr3|234549|HEAT repeat containing 3	AK052635|Heatr3|234549|HEAT repeat containing 3	AK165541|Heatr3|234549|HEAT repeat containing 3	AK140522|Heatr3|234549|HEAT repeat containing 3	AK136424|Heatr3|234549|HEAT repeat containing 3	AK134510|Heatr3|234549|HEAT repeat containing 3	BC065060|Heatr3|234549|HEAT repeat containing 3	NM_172757|Heatr3|234549|HEAT repeat containing 3	AK163715|Heatr3|234549|HEAT repeat containing 3
mm9_v1_chr15_-_75812714_75812714	0.238962	bHLH_family.p2	BC047213|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene	NM_001163518|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene	NM_146059|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene
mm9_v1_chr10_+_86520790_86520790	0.238744	bHLH_family.p2	NM_029685|1700113H08Rik|76640|RIKEN cDNA 1700113H08 gene
mm9_v1_chr6_-_115570256_115570290	0.238653	bHLH_family.p2	AB052739|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr8_+_11443165_11443220	0.238584	bHLH_family.p2	BC013560|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chrX_+_54662330_54662330	0.237418	bHLH_family.p2	NM_001128625|Gm364|245423|predicted gene 364
mm9_v1_chr5_-_72972316_72972322	0.235954	bHLH_family.p2	BC099399|Zar1|317755|zygote arrest 1	AY191415|Zar1|317755|zygote arrest 1	NM_174877|Zar1|317755|zygote arrest 1
mm9_v1_chr10_+_96079634_96079769	0.235464	bHLH_family.p2	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr4_+_125781341_125781369	0.234925	bHLH_family.p2	AB102946|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr7_-_31606157_31606210	0.234815	bHLH_family.p2	NM_001168511|Ffar2|233079|free fatty acid receptor 2	NM_001168510|Ffar2|233079|free fatty acid receptor 2
mm9_v1_chr5_+_108697913_108698008	0.234324	bHLH_family.p2	AK075713|Dr1|13486|down-regulator of transcription 1	NM_026106|Dr1|13486|down-regulator of transcription 1	AK144749|Dr1|13486|down-regulator of transcription 1	AK007230|Dr1|13486|down-regulator of transcription 1	AK090113|Dr1|13486|down-regulator of transcription 1	AK146573|Dr1|13486|down-regulator of transcription 1	AK031057|Dr1|13486|down-regulator of transcription 1	AK139866|Dr1|13486|down-regulator of transcription 1	AK018040|Dr1|13486|down-regulator of transcription 1
mm9_v1_chr17_-_34740422_34740567	0.234035	bHLH_family.p2	BC012031|Rnf5|54197|ring finger protein 5	AK012729|Rnf5|54197|ring finger protein 5	AK020514|Rnf5|54197|ring finger protein 5	BC016449|Rnf5|54197|ring finger protein 5	NM_019403|Rnf5|54197|ring finger protein 5	AK019289|Rnf5|54197|ring finger protein 5	AK020515|Rnf5|54197|ring finger protein 5	AK010792|Rnf5|54197|ring finger protein 5
mm9_v1_chr18_-_61946299_61946348	0.233611	bHLH_family.p2	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr6_-_29457924_29457972	0.233265	bHLH_family.p2	BC119794|Kcp|333088|kielin/chordin-like protein	NM_001029985|Kcp|333088|kielin/chordin-like protein	AY884211|Kcp|333088|kielin/chordin-like protein	AK154369|Kcp|333088|kielin/chordin-like protein
mm9_v1_chr5_-_31495457_31495511	0.232985	bHLH_family.p2	M98036|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_001127355|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_001127356|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_010122|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta
mm9_v1_chr4_-_69587193_69587277	0.232877	bHLH_family.p2	AK030082|Gm11223|100039888|stathmin 1 pseudogene
mm9_v1_chr15_+_58247107_58247243	0.231827	bHLH_family.p2	AK122297|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	DQ228142|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr3_-_116365414_116365594	0.230954	bHLH_family.p2	AK135865|Hiat1|15247|hippocampus abundant gene transcript 1	BC118047|Hiat1|15247|hippocampus abundant gene transcript 1	D88315|Hiat1|15247|hippocampus abundant gene transcript 1	AK004779|Hiat1|15247|hippocampus abundant gene transcript 1	AK169626|Hiat1|15247|hippocampus abundant gene transcript 1	AK158838|Hiat1|15247|hippocampus abundant gene transcript 1	NM_008246|Hiat1|15247|hippocampus abundant gene transcript 1
mm9_v1_chr2_+_92218979_92219090	0.23054	bHLH_family.p2	
mm9_v1_chr8_-_127275549_127275749	0.230422	bHLH_family.p2	BC023460|Fam89a|69627|family with sequence similarity 89, member A	BC115734|Fam89a|69627|family with sequence similarity 89, member A	BC115819|Fam89a|69627|family with sequence similarity 89, member A	NM_001081120|Fam89a|69627|family with sequence similarity 89, member A
mm9_v1_chr8_-_95721654_95721683	0.230348	bHLH_family.p2	AB023631|Ces1d|104158|carboxylesterase 1D	AF378751|Ces1d|104158|carboxylesterase 1D	AK078879|Ces1d|104158|carboxylesterase 1D
mm9_v1_chr12_+_85379311_85379384	0.230291	bHLH_family.p2	AK046630|Acot4|171282|acyl-CoA thioesterase 4	NM_134247|Acot4|171282|acyl-CoA thioesterase 4	AK080883|Acot4|171282|acyl-CoA thioesterase 4	AK050420|Acot4|171282|acyl-CoA thioesterase 4	BC113185|Acot4|171282|acyl-CoA thioesterase 4
mm9_v1_chr2_+_26772222_26772291	0.230024	bHLH_family.p2	AK216211|Surf2|20931|surfeit gene 2	AK004931|Surf2|20931|surfeit gene 2
mm9_v1_chr13_+_113078658_113078796	0.229946	bHLH_family.p2	AK039553|Ankrd55|77318|ankyrin repeat domain 55	NM_001168403|Ankrd55|77318|ankyrin repeat domain 55	NM_001168405|Ankrd55|77318|ankyrin repeat domain 55	NM_029898|Ankrd55|77318|ankyrin repeat domain 55	AK081197|Ankrd55|77318|ankyrin repeat domain 55	NM_001168404|Ankrd55|77318|ankyrin repeat domain 55	AK140417|Ankrd55|77318|ankyrin repeat domain 55
mm9_v1_chr12_+_85758140_85758149	0.229588	bHLH_family.p2	AK009420|Rnf113a2|66381|ring finger protein 113A2	NM_025525|Rnf113a2|66381|ring finger protein 113A2
mm9_v1_chr15_+_85565935_85565993	0.229511	bHLH_family.p2	AK081709|Ppara|19013|peroxisome proliferator activated receptor alpha	NM_001113418|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr17_-_56214328_56214451	0.228732	bHLH_family.p2	BC016412|Ubxn6|66530|UBX domain protein 6	AK148170|Ubxn6|66530|UBX domain protein 6	BC049963|Ubxn6|66530|UBX domain protein 6	NM_024432|Ubxn6|66530|UBX domain protein 6	AK008942|Ubxn6|66530|UBX domain protein 6	AF272895|Ubxn6|66530|UBX domain protein 6	AK161273|Ubxn6|66530|UBX domain protein 6	AK075705|Ubxn6|66530|UBX domain protein 6	AK082510|Ubxn6|66530|UBX domain protein 6
mm9_v1_chr11_-_77997042_77997098	0.228565	bHLH_family.p2	BC026656|Rpl23a|268449|ribosomal protein L23A	BC096637|Rpl23a|268449|ribosomal protein L23A	AF452721|Rpl23a|268449|ribosomal protein L23A	BC029892|Rpl23a|268449|ribosomal protein L23A	AK028387|Rpl23a|268449|ribosomal protein L23A	AK152095|Rpl23a|268449|ribosomal protein L23A	BC086884|Rpl23a|268449|ribosomal protein L23A	BC086883|Rpl23a|268449|ribosomal protein L23A	BC125640|Rpl23a|268449|ribosomal protein L23A	BC125642|Rpl23a|268449|ribosomal protein L23A	NM_207523|Rpl23a|268449|ribosomal protein L23A
mm9_v1_chr11_+_102291828_102291840	0.228493	bHLH_family.p2	AK152944|Grn|14824|granulin	AK153183|Grn|14824|granulin	AK159397|Grn|14824|granulin	AK159428|Grn|14824|granulin	AK160074|Grn|14824|granulin	AK152118|Grn|14824|granulin	AK160022|Grn|14824|granulin	AK150420|Grn|14824|granulin	BC049943|Grn|14824|granulin	AK152213|Grn|14824|granulin	BC129849|Grn|14824|granulin	BC129850|Grn|14824|granulin	AK150338|Grn|14824|granulin	M86736|Grn|14824|granulin
mm9_v1_chr4_+_120527397_120527477	0.2282	bHLH_family.p2	AK047745|Rims3|242662|regulating synaptic membrane exocytosis 3	AK043152|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr9_+_88851757_88851833	0.22767	bHLH_family.p2	L16462|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a	NM_009742|Bcl2a1a|12044|B-cell leukemia/lymphoma 2 related protein A1a
mm9_v1_chr12_-_88225200_88225353	0.227253	bHLH_family.p2	BC057128|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	BC063253|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr14_+_31362306_31362551	0.227112	bHLH_family.p2	AK166763|Tkt|21881|transketolase	AK167084|Tkt|21881|transketolase	AK140965|Tkt|21881|transketolase	AK030446|Tkt|21881|transketolase	NM_009388|Tkt|21881|transketolase	AK152460|Tkt|21881|transketolase	AK002627|Tkt|21881|transketolase	AK012794|Tkt|21881|transketolase	AK145677|Tkt|21881|transketolase	AK150139|Tkt|21881|transketolase	AK150901|Tkt|21881|transketolase	AK159922|Tkt|21881|transketolase	U05809|Tkt|21881|transketolase	AK050793|Tkt|21881|transketolase	AK146157|Tkt|21881|transketolase	AK144146|Tkt|21881|transketolase	AK150769|Tkt|21881|transketolase	AK150844|Tkt|21881|transketolase	AK150856|Tkt|21881|transketolase	AK152245|Tkt|21881|transketolase	AK151916|Tkt|21881|transketolase	AK151969|Tkt|21881|transketolase	AK152886|Tkt|21881|transketolase	BC055336|Tkt|21881|transketolase	AK216935|Tkt|21881|transketolase	AK181952|Tkt|21881|transketolase
mm9_v1_chr3_+_89234758_89234758	0.225592	bHLH_family.p2	AK132759|Pygo2|68911|pygopus 2	NM_026869|Pygo2|68911|pygopus 2
mm9_v1_chr8_+_119619761_119619897	0.225416	bHLH_family.p2	AF294899|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	AJ278064|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	NM_001163028|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	NM_021486|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	AK146472|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC125328|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC125330|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC145036|Bcmo1|63857|beta-carotene 15,15'-monooxygenase
mm9_v1_chr9_+_72286335_72286422	0.22541	bHLH_family.p2	NM_008613|Mns1|17427|meiosis-specific nuclear structural protein 1	AK132772|Mns1|17427|meiosis-specific nuclear structural protein 1	AK013048|Mns1|17427|meiosis-specific nuclear structural protein 1	BC046624|Mns1|17427|meiosis-specific nuclear structural protein 1
mm9_v1_chr11_-_100355280_100355392	0.224985	bHLH_family.p2	AK136812|Acly|104112|ATP citrate lyase	AK043434|Acly|104112|ATP citrate lyase
mm9_v1_chr11_-_5815126_5815140	0.224947	bHLH_family.p2	BC011139|Gck|103988|glucokinase	AK142698|Gck|103988|glucokinase
mm9_v1_chr9_+_45211220_45211296	0.224775	bHLH_family.p2	AY626244|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	NM_052823|Fxyd2|11936|FXYD domain-containing ion transport regulator 2	BC069892|Fxyd2|11936|FXYD domain-containing ion transport regulator 2
mm9_v1_chr11_-_69609438_69609445	0.224608	bHLH_family.p2	NM_009601|Chrnb1|11443|cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	BC023318|Chrnb1|11443|cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
mm9_v1_chr7_-_53895076_53895193	0.22412	bHLH_family.p2	BC049603|Sergef|27414|secretion regulating guanine nucleotide exchange factor	AJ243952|Sergef|27414|secretion regulating guanine nucleotide exchange factor	BC119533|Sergef|27414|secretion regulating guanine nucleotide exchange factor	BC119534|Sergef|27414|secretion regulating guanine nucleotide exchange factor	AK145819|Sergef|27414|secretion regulating guanine nucleotide exchange factor	AK147848|Sergef|27414|secretion regulating guanine nucleotide exchange factor	NM_013789|Sergef|27414|secretion regulating guanine nucleotide exchange factor
mm9_v1_chr16_-_28929698_28929810	0.22395	bHLH_family.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr11_-_54063400_54063400	0.223498	bHLH_family.p2	AK053196|Csf2|12981|colony stimulating factor 2 (granulocyte-macrophage)	NM_009969|Csf2|12981|colony stimulating factor 2 (granulocyte-macrophage)
mm9_v1_chr10_-_80363493_80363567	0.223475	bHLH_family.p2	AK009041|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK013230|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK003054|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK009152|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK088984|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	BC011436|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr4_-_116494091_116494112	0.222978	bHLH_family.p2	AK049217|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	AK043902|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	AK078929|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	NM_146256|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like
mm9_v1_chr5_-_124804583_124804698	0.222673	bHLH_family.p2	BC083075|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	NM_013812|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	AK004852|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr3_-_88285172_88285231	0.222504	bHLH_family.p2	
mm9_v1_chr11_-_77322170_77322306	0.222329	bHLH_family.p2	AK003215|Trp53i13|216964|transformation related protein 53 inducible protein 13
mm9_v1_chr4_-_131631226_131631229	0.222178	bHLH_family.p2	NM_001128607|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr15_-_89209682_89209731	0.222069	bHLH_family.p2	BC087962|Odf3b|70113|outer dense fiber of sperm tails 3B	NM_001013022|Odf3b|70113|outer dense fiber of sperm tails 3B
mm9_v1_chr10_-_80039973_80040065	0.222035	bHLH_family.p2	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chrX_-_50723622_50723678	0.221952	bHLH_family.p2	BC100442|Mospd1|70380|motile sperm domain containing 1	BC018329|Mospd1|70380|motile sperm domain containing 1	BC085100|Mospd1|70380|motile sperm domain containing 1	AK007533|Mospd1|70380|motile sperm domain containing 1	NM_027409|Mospd1|70380|motile sperm domain containing 1	AK088275|Mospd1|70380|motile sperm domain containing 1	AK139795|Mospd1|70380|motile sperm domain containing 1
mm9_v1_chr7_-_25230700_25230700	0.221531	bHLH_family.p2	AK089224|Irgc1|210145|immunity-related GTPase family, cinema 1	NM_199013|Irgc1|210145|immunity-related GTPase family, cinema 1
mm9_v1_chr11_+_105043224_105043367	0.221507	bHLH_family.p2	BC066198|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	AK089925|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)
mm9_v1_chr10_+_116387609_116387672	0.221325	bHLH_family.p2	AK084517|4933412E12Rik|71086|RIKEN cDNA 4933412E12 gene	AK016788|4933412E12Rik|71086|RIKEN cDNA 4933412E12 gene
mm9_v1_chr19_+_8915018_8915039	0.221286	bHLH_family.p2	AK004634|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK151606|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK155753|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK170183|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr6_+_57020888_57020888	0.221057	bHLH_family.p2	BC132241|Vmn1r9|171203|vomeronasal 1 receptor 9	BC132577|Vmn1r9|171203|vomeronasal 1 receptor 9	NM_134185|Vmn1r9|171203|vomeronasal 1 receptor 9
mm9_v1_chr13_-_49343519_49343531	0.220998	bHLH_family.p2	AK006068|Susd3|66329|sushi domain containing 3	AK013276|Susd3|66329|sushi domain containing 3	AK003860|Susd3|66329|sushi domain containing 3	NM_025491|Susd3|66329|sushi domain containing 3
mm9_v1_chr4_+_119095288_119095487	0.219937	bHLH_family.p2	BC147848|Zmynd12|332934|zinc finger, MYND domain containing 12	BC147851|Zmynd12|332934|zinc finger, MYND domain containing 12	NM_001014900|Zmynd12|332934|zinc finger, MYND domain containing 12	BC147552|Zmynd12|332934|zinc finger, MYND domain containing 12	BC147553|Zmynd12|332934|zinc finger, MYND domain containing 12	AY959941|Zmynd12|332934|zinc finger, MYND domain containing 12
mm9_v1_chr18_-_43552694_43552984	0.219774	bHLH_family.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr17_+_48594225_48594270	0.219627	bHLH_family.p2	AK144925|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	NM_152823|Unc5cl|76589|unc-5 homolog C (C. elegans)-like	BC095959|Unc5cl|76589|unc-5 homolog C (C. elegans)-like
mm9_v1_chr14_-_9005451_9005513	0.219533	bHLH_family.p2	BC094468|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK153058|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK167798|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK014180|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK084507|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK011810|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK163596|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	BC019512|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK014918|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK166631|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	NM_024221|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta
mm9_v1_chr7_+_150293158_150293455	0.219301	bHLH_family.p2	BC045142|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	NM_008434|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	AK154244|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	BC055304|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	AY331142|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	U70068|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	AB079603|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1
mm9_v1_chr18_-_46440360_46440503	0.219275	bHLH_family.p2	AK028188|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK170240|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	BC141021|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK081731|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	NM_172627|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit
mm9_v1_chr6_-_134742342_134742495	0.218478	bHLH_family.p2	AB052157|Dusp16|70686|dual specificity phosphatase 16	BC059232|Dusp16|70686|dual specificity phosphatase 16	AF345951|Dusp16|70686|dual specificity phosphatase 16	AF345952|Dusp16|70686|dual specificity phosphatase 16	AF345953|Dusp16|70686|dual specificity phosphatase 16	AF345954|Dusp16|70686|dual specificity phosphatase 16	BC057321|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr2_+_25143664_25143664	0.218077	bHLH_family.p2	AK019803|Tmem210|78217|transmembrane protein 210	NM_030055|Tmem210|78217|transmembrane protein 210
mm9_v1_chr8_+_97876182_97876236	0.218071	bHLH_family.p2	BC047278|Mmp15|17388|matrix metallopeptidase 15	NM_008609|Mmp15|17388|matrix metallopeptidase 15
mm9_v1_chr19_-_43827386_43827505	0.217844	bHLH_family.p2	AK051792|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC021498|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK141631|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC011509|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK048099|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	NM_144874|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)
mm9_v1_chr11_-_52095745_52095751	0.217272	bHLH_family.p2	BC138596|Tcf7|21414|transcription factor 7, T-cell specific	BC145343|Tcf7|21414|transcription factor 7, T-cell specific	AK037616|Tcf7|21414|transcription factor 7, T-cell specific	NM_009331|Tcf7|21414|transcription factor 7, T-cell specific
mm9_v1_chr6_+_48986625_48986740	0.21703	bHLH_family.p2	AK044764|Gpnmb|93695|glycoprotein (transmembrane) nmb	AJ251685|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159908|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171347|Gpnmb|93695|glycoprotein (transmembrane) nmb	BC026375|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK076347|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK149700|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK150739|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159747|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171441|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171465|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK089272|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171474|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171618|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171608|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK079220|Gpnmb|93695|glycoprotein (transmembrane) nmb	AF322054|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK190718|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK192494|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK193667|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK202660|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK204559|Gpnmb|93695|glycoprotein (transmembrane) nmb
mm9_v1_chr18_+_42671163_42671217	0.216919	bHLH_family.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr11_+_48650972_48651000	0.216668	bHLH_family.p2	AF220033|Trim7|94089|tripartite motif-containing 7	BC138188|Trim7|94089|tripartite motif-containing 7
mm9_v1_chr5_-_36071673_36071684	0.216512	bHLH_family.p2	AK171242|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK155330|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK171209|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1
mm9_v1_chr10_-_80488111_80488155	0.21597	bHLH_family.p2	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr5_-_149862867_149863025	0.215951	bHLH_family.p2	BC110667|Hmgb1|15289|high mobility group box 1	AK037928|Hmgb1|15289|high mobility group box 1
mm9_v1_chr17_+_15080216_15080250	0.214737	bHLH_family.p2	AK005427|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC043303|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC043449|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK076083|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK076441|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK150772|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK083064|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK167490|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr3_-_91927868_91927868	0.214721	bHLH_family.p2	AK079463|Prr9|109314|proline rich 9	NM_175424|Prr9|109314|proline rich 9
mm9_v1_chr4_+_115500670_115500814	0.214594	bHLH_family.p2	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr3_-_108525202_108525224	0.214362	bHLH_family.p2	AK143552|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)	NM_029522|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)
mm9_v1_chr7_-_151008681_151008745	0.214127	bHLH_family.p2	BC038016|Nadsyn1|78914|NAD synthetase 1	BC018248|Nadsyn1|78914|NAD synthetase 1	AK042389|Nadsyn1|78914|NAD synthetase 1	AK041101|Nadsyn1|78914|NAD synthetase 1	AK045774|Nadsyn1|78914|NAD synthetase 1	AK046491|Nadsyn1|78914|NAD synthetase 1	AJ305343|Nadsyn1|78914|NAD synthetase 1	AK020264|Nadsyn1|78914|NAD synthetase 1	NM_030221|Nadsyn1|78914|NAD synthetase 1
mm9_v1_chr17_+_15080256_15080312	0.213954	bHLH_family.p2	BC054359|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK017276|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK018298|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK076476|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC071250|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC027313|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK197792|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK213665|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK214640|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK218850|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr6_-_145024596_145024703	0.213765	bHLH_family.p2	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr11_+_84984593_84984597	0.212191	bHLH_family.p2	BC048674|1700125H20Rik|73634|RIKEN cDNA 1700125H20 gene	NM_028589|1700125H20Rik|73634|RIKEN cDNA 1700125H20 gene
mm9_v1_chr7_-_140793797_140793840	0.211776	bHLH_family.p2	BC100509|4930404H21Rik|73808|RIKEN cDNA 4930404H21 gene	NM_028654|4930404H21Rik|73808|RIKEN cDNA 4930404H21 gene	AK015080|4930404H21Rik|73808|RIKEN cDNA 4930404H21 gene
mm9_v1_chr11_-_33413715_33413767	0.210798	bHLH_family.p2	NM_023146|Ranbp17|66011|RAN binding protein 17
mm9_v1_chr4_+_124334876_124334927	0.210758	bHLH_family.p2	NM_011141|Pou3f1|18991|POU domain, class 3, transcription factor 1	X54628|Pou3f1|18991|POU domain, class 3, transcription factor 1	X56959|Pou3f1|18991|POU domain, class 3, transcription factor 1	X57482|Pou3f1|18991|POU domain, class 3, transcription factor 1
mm9_v1_chr14_+_35633312_35633351	0.210706	bHLH_family.p2	NM_008166|Grid1|14803|glutamate receptor, ionotropic, delta 1	AK138279|Grid1|14803|glutamate receptor, ionotropic, delta 1	D10171|Grid1|14803|glutamate receptor, ionotropic, delta 1
mm9_v1_chr10_-_80164559_80164668	0.210606	bHLH_family.p2	BC058238|Mobkl2a|208228|MOB1, Mps One Binder kinase activator-like 2A (yeast)	NM_172457|Mobkl2a|208228|MOB1, Mps One Binder kinase activator-like 2A (yeast)	AK080169|Mobkl2a|208228|MOB1, Mps One Binder kinase activator-like 2A (yeast)	AK170394|Mobkl2a|208228|MOB1, Mps One Binder kinase activator-like 2A (yeast)	AK171197|Mobkl2a|208228|MOB1, Mps One Binder kinase activator-like 2A (yeast)	AK030481|Mobkl2a|208228|MOB1, Mps One Binder kinase activator-like 2A (yeast)
mm9_v1_chrX_-_100958883_100958891	0.209958	bHLH_family.p2	BC158129|Gm6222|621381|predicted pseudogene 6222	NM_001170979|Gm6222|621381|predicted pseudogene 6222
mm9_v1_chr5_+_135408221_135408290	0.209376	bHLH_family.p2	AY138964|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354925|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354926|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354927|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	NM_024479|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK042578|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK132481|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK081683|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	BC002286|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)
mm9_v1_chr7_-_97624504_97624555	0.208874	bHLH_family.p2	AK003201|Tmem126b|68472|transmembrane protein 126B	BC049680|Tmem126b|68472|transmembrane protein 126B	NM_026734|Tmem126b|68472|transmembrane protein 126B
mm9_v1_chr6_-_83781657_83781701	0.20842	bHLH_family.p2	BC017133|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC034096|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC039969|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK173114|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK168804|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK045922|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chrX_+_132804834_132804853	0.208278	bHLH_family.p2	AK003294|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr13_+_21271760_21271827	0.208263	bHLH_family.p2	AK049314|Trim27|19720|tripartite motif-containing 27	NM_009054|Trim27|19720|tripartite motif-containing 27
mm9_v1_chr3_-_95110715_95110725	0.208131	bHLH_family.p2	BC062140|Anxa9|71790|annexin A9	AK003395|Anxa9|71790|annexin A9	NM_001085383|Anxa9|71790|annexin A9
mm9_v1_chr7_+_134439888_134439975	0.208087	bHLH_family.p2	AK155566|Itgal|16408|integrin alpha L	AK171389|Itgal|16408|integrin alpha L	M60778|Itgal|16408|integrin alpha L	BC145094|Itgal|16408|integrin alpha L	BC145095|Itgal|16408|integrin alpha L	BC145096|Itgal|16408|integrin alpha L	BC145802|Itgal|16408|integrin alpha L	AF065901|Itgal|16408|integrin alpha L	AF065902|Itgal|16408|integrin alpha L	AK152913|Itgal|16408|integrin alpha L
mm9_v1_chr9_+_44481317_44481331	0.207501	bHLH_family.p2	AK002566|Treh|58866|trehalase (brush-border membrane glycoprotein)	AF136944|Treh|58866|trehalase (brush-border membrane glycoprotein)	NM_021481|Treh|58866|trehalase (brush-border membrane glycoprotein)	AK008912|Treh|58866|trehalase (brush-border membrane glycoprotein)	BC019214|Treh|58866|trehalase (brush-border membrane glycoprotein)
mm9_v1_chr2_-_174120889_174120936	0.207359	bHLH_family.p2	AF319945|Nespas|56802|neuroendocrine secretory protein antisense	AK153813|Nespas|56802|neuroendocrine secretory protein antisense
mm9_v1_chr13_+_51747065_51747139	0.207282	bHLH_family.p2	AK156076|Secisbp2|75420|SECIS binding protein 2	BC125391|Secisbp2|75420|SECIS binding protein 2	BC144795|Secisbp2|75420|SECIS binding protein 2	NM_029279|Secisbp2|75420|SECIS binding protein 2	BC125393|Secisbp2|75420|SECIS binding protein 2	AK012732|Secisbp2|75420|SECIS binding protein 2	AK168634|Secisbp2|75420|SECIS binding protein 2	AK037988|Secisbp2|75420|SECIS binding protein 2	AK030021|Secisbp2|75420|SECIS binding protein 2
mm9_v1_chr6_+_90569209_90569239	0.206519	bHLH_family.p2	NM_001037493|Slc41a3|71699|solute carrier family 41, member 3	AK003140|Slc41a3|71699|solute carrier family 41, member 3
mm9_v1_chr15_-_72926936_72926959	0.206428	bHLH_family.p2	AK003962|1110029L17Rik|68722|RIKEN cDNA 1110029L17 gene
mm9_v1_chr7_-_106987766_106987861	0.205703	bHLH_family.p2	AK180141|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr10_+_92951804_92951841	0.205258	bHLH_family.p2	AK028963|Hal|15109|histidine ammonia lyase	AK081409|Hal|15109|histidine ammonia lyase	BC057637|Hal|15109|histidine ammonia lyase	L07645|Hal|15109|histidine ammonia lyase
mm9_v1_chr5_-_134932407_134932628	0.205238	bHLH_family.p2	BC057091|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC058964|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF247161|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497637|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497638|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497639|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343348|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343351|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497640|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK078488|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343350|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497642|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343349|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497641|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK051310|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF260133|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030287|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030288|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030289|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF257475|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK147196|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC050822|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081462|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081463|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081464|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081466|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081467|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081468|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081469|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081470|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_020331|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1
mm9_v1_chr7_-_36539369_36539472	0.205156	bHLH_family.p2	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr3_+_135128934_135128963	0.205043	bHLH_family.p2	AK206793|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr7_-_69565024_69565050	0.20495	bHLH_family.p2	BC054771|Mkrn3|22652|makorin, ring finger protein, 3	NM_011746|Mkrn3|22652|makorin, ring finger protein, 3	AK134870|Mkrn3|22652|makorin, ring finger protein, 3
mm9_v1_chr14_+_56269018_56269128	0.204832	bHLH_family.p2	NM_027673|Tssk4|71099|testis-specific serine kinase 4	AK016890|Tssk4|71099|testis-specific serine kinase 4	EF127819|Tssk4|71099|testis-specific serine kinase 4	EF127820|Tssk4|71099|testis-specific serine kinase 4	EF127821|Tssk4|71099|testis-specific serine kinase 4	EF127822|Tssk4|71099|testis-specific serine kinase 4	AK006144|Tssk4|71099|testis-specific serine kinase 4	DQ397205|Tssk4|71099|testis-specific serine kinase 4	DQ397206|Tssk4|71099|testis-specific serine kinase 4	AY461664|Tssk4|71099|testis-specific serine kinase 4	NM_029596|Tssk4|71099|testis-specific serine kinase 4
mm9_v1_chr3_+_138106073_138106138	0.204379	bHLH_family.p2	AK041792|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	AK159803|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	M84147|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	AK146949|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	AK076507|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	NM_007410|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	BC062879|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	AK002790|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide	BC090978|Adh5|11532|alcohol dehydrogenase 5 (class III), chi polypeptide
mm9_v1_chr16_-_89011003_89011003	0.204272	bHLH_family.p2	AK004025|Krtap22-2|68740|keratin associated protein 22-2	NM_001191018|Krtap22-2|68740|keratin associated protein 22-2
mm9_v1_chr5_+_23870625_23870649	0.204251	bHLH_family.p2	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr11_-_118902219_118902253	0.204105	bHLH_family.p2	AF180370|Cbx8|30951|chromobox homolog 8 (Drosophila Pc class)	NM_013926|Cbx8|30951|chromobox homolog 8 (Drosophila Pc class)
mm9_v1_chr8_+_106694341_106694482	0.203883	bHLH_family.p2	BC030426|Bean1|65115|brain expressed, associated with Nedd4, 1	AK134633|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141922|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141924|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141925|Bean1|65115|brain expressed, associated with Nedd4, 1	BC138184|Bean1|65115|brain expressed, associated with Nedd4, 1
mm9_v1_chr7_+_146038086_146038160	0.203711	bHLH_family.p2	AF366393|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr2_-_26997965_26998000	0.203323	bHLH_family.p2	AK083284|Fam163b|109349|family with sequence similarity 163, member B	AK162827|Fam163b|109349|family with sequence similarity 163, member B	NM_175427|Fam163b|109349|family with sequence similarity 163, member B
mm9_v1_chr5_-_37221812_37221913	0.201885	bHLH_family.p2	BC066211|Man2b2|17160|mannosidase 2, alpha B2	AK004900|Man2b2|17160|mannosidase 2, alpha B2	AK040388|Man2b2|17160|mannosidase 2, alpha B2	AK151873|Man2b2|17160|mannosidase 2, alpha B2	AK152349|Man2b2|17160|mannosidase 2, alpha B2	AB006458|Man2b2|17160|mannosidase 2, alpha B2	AK079969|Man2b2|17160|mannosidase 2, alpha B2	AK165376|Man2b2|17160|mannosidase 2, alpha B2	NM_008550|Man2b2|17160|mannosidase 2, alpha B2
mm9_v1_chrX_+_54307050_54307082	0.201725	bHLH_family.p2	AK011234|Htatsf1|72459|HIV TAT specific factor 1	AK005527|Htatsf1|72459|HIV TAT specific factor 1	AK139853|Htatsf1|72459|HIV TAT specific factor 1	AK049495|Htatsf1|72459|HIV TAT specific factor 1
mm9_v1_chr7_+_107154913_107155009	0.20169	bHLH_family.p2	NM_133709|Chrdl2|69121|chordin-like 2	BC019399|Chrdl2|69121|chordin-like 2	AF338222|Chrdl2|69121|chordin-like 2
mm9_v1_chr8_-_73046985_73047078	0.201324	bHLH_family.p2	AK155003|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK013135|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK002695|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC048938|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC053944|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	NM_029366|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene
mm9_v1_chr6_-_91465788_91465881	0.200744	bHLH_family.p2	U27398|Xpc|22591|xeroderma pigmentosum, complementation group C	AK170975|Xpc|22591|xeroderma pigmentosum, complementation group C	AK166981|Xpc|22591|xeroderma pigmentosum, complementation group C	AB071144|Xpc|22591|xeroderma pigmentosum, complementation group C	AK028595|Xpc|22591|xeroderma pigmentosum, complementation group C	AK004713|Xpc|22591|xeroderma pigmentosum, complementation group C	BC052725|Xpc|22591|xeroderma pigmentosum, complementation group C	NM_009531|Xpc|22591|xeroderma pigmentosum, complementation group C
mm9_v1_chr4_-_138281116_138281156	0.198775	bHLH_family.p2	AK045964|Ubxn10|212190|UBX domain protein 10	AK161296|Ubxn10|212190|UBX domain protein 10	AK080662|Ubxn10|212190|UBX domain protein 10
mm9_v1_chr19_-_5609896_5610062	0.19809	bHLH_family.p2	AK195015|Kat5|81601|K(lysine) acetyltransferase 5	AK159568|Kat5|81601|K(lysine) acetyltransferase 5	AK160077|Kat5|81601|K(lysine) acetyltransferase 5	BC129967|Kat5|81601|K(lysine) acetyltransferase 5	AF528195|Kat5|81601|K(lysine) acetyltransferase 5	AF528196|Kat5|81601|K(lysine) acetyltransferase 5	BC129968|Kat5|81601|K(lysine) acetyltransferase 5	DQ139980|Kat5|81601|K(lysine) acetyltransferase 5	NM_178637|Kat5|81601|K(lysine) acetyltransferase 5	BC110675|Kat5|81601|K(lysine) acetyltransferase 5	AK143674|Kat5|81601|K(lysine) acetyltransferase 5	AK146352|Kat5|81601|K(lysine) acetyltransferase 5
mm9_v1_chr6_+_14851348_14851478	0.197579	bHLH_family.p2	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr17_-_89599951_89600014	0.197544	bHLH_family.p2	AF095642|Fshr|14309|follicle stimulating hormone receptor	BC137990|Fshr|14309|follicle stimulating hormone receptor	BC137991|Fshr|14309|follicle stimulating hormone receptor	AK016635|Fshr|14309|follicle stimulating hormone receptor	NM_013523|Fshr|14309|follicle stimulating hormone receptor
mm9_v1_chr9_-_42072373_42072382	0.197057	bHLH_family.p2	NM_172769|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr6_-_146450669_146450707	0.196866	bHLH_family.p2	AK169446|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2
mm9_v1_chr11_-_54776398_54776449	0.195772	bHLH_family.p2	AK172890|Tnip1|57783|TNFAIP3 interacting protein 1	AK156131|Tnip1|57783|TNFAIP3 interacting protein 1	BC008665|Tnip1|57783|TNFAIP3 interacting protein 1	AJ242777|Tnip1|57783|TNFAIP3 interacting protein 1	AJ242778|Tnip1|57783|TNFAIP3 interacting protein 1	AK170841|Tnip1|57783|TNFAIP3 interacting protein 1	NM_021327|Tnip1|57783|TNFAIP3 interacting protein 1
mm9_v1_chr5_+_144861227_144861325	0.195323	bHLH_family.p2	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr9_-_99610427_99610465	0.194011	bHLH_family.p2	AF349450|Cldn18|56492|claudin 18	AF221068|Cldn18|56492|claudin 18
mm9_v1_chr3_-_96097855_96097923	0.193908	bHLH_family.p2	BC025535|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143154|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143155|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143156|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143157|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143158|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143159|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143160|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143161|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143162|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143163|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143164|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143165|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143166|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143167|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143168|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143169|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143170|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143171|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143172|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143173|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143174|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143175|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143176|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143177|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143178|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143179|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143180|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143181|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143186|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143187|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143188|Fcgr1|14129|Fc receptor, IgG, high affinity I	X70980|Fcgr1|14129|Fc receptor, IgG, high affinity I	M31314|Fcgr1|14129|Fc receptor, IgG, high affinity I	AK033874|Fcgr1|14129|Fc receptor, IgG, high affinity I	NM_010186|Fcgr1|14129|Fc receptor, IgG, high affinity I
mm9_v1_chr14_+_122874598_122874609	0.19312	bHLH_family.p2	AK051032|Zic2|22772|zinc finger protein of the cerebellum 2	NM_009574|Zic2|22772|zinc finger protein of the cerebellum 2
mm9_v1_chr3_+_94778797_94778907	0.192521	bHLH_family.p2	BC113176|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK048405|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK157918|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK030704|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm9_v1_chr17_-_87424652_87424745	0.192195	bHLH_family.p2	AK218842|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK171083|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	BC028862|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	D50264|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	NM_008838|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK132796|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F
mm9_v1_chr7_+_125884231_125884271	0.192136	bHLH_family.p2	AK136140|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK018573|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK050302|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK011615|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK135249|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	BC054720|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene
mm9_v1_chr11_-_100334035_100334069	0.192093	bHLH_family.p2	AK169910|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr2_-_28695789_28695879	0.19193	bHLH_family.p2	BC117920|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC117919|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK030351|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC095998|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC061476|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK146401|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK146403|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK150650|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK151179|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK153102|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK141269|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	NM_001166033|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	NM_172977|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4
mm9_v1_chr4_+_124707260_124707362	0.191896	bHLH_family.p2	AK146404|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	BC003262|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	AK077532|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	AK037796|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	U69600|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)
mm9_v1_chr4_+_116799417_116799417	0.191076	bHLH_family.p2	AK029345|Tctex1d4|242646|Tctex1 domain containing 4	NM_175030|Tctex1d4|242646|Tctex1 domain containing 4
mm9_v1_chr11_+_98245124_98245152	0.190801	bHLH_family.p2	AJ223854|Tcap|21393|titin-cap	NM_011540|Tcap|21393|titin-cap	AK010167|Tcap|21393|titin-cap	Y15845|Tcap|21393|titin-cap	BC027631|Tcap|21393|titin-cap	BC032992|Tcap|21393|titin-cap
mm9_v1_chr5_-_92512486_92512611	0.190641	bHLH_family.p2	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr19_-_11239795_11239809	0.190205	bHLH_family.p2	BC048529|1700025F22Rik|69416|RIKEN cDNA 1700025F22 gene	BC061241|1700025F22Rik|69416|RIKEN cDNA 1700025F22 gene	AK006335|1700025F22Rik|69416|RIKEN cDNA 1700025F22 gene	NM_027074|1700025F22Rik|69416|RIKEN cDNA 1700025F22 gene
mm9_v1_chr11_+_115301840_115301858	0.189815	bHLH_family.p2	BC147608|4933422H20Rik|432613|RIKEN cDNA 4933422H20 gene	BC157912|4933422H20Rik|432613|RIKEN cDNA 4933422H20 gene	AK133415|4933422H20Rik|432613|RIKEN cDNA 4933422H20 gene	NM_001033775|4933422H20Rik|432613|RIKEN cDNA 4933422H20 gene
mm9_v1_chr17_+_25503264_25503277	0.189523	bHLH_family.p2	M57626|Tpsb2|17229|tryptase beta 2	NM_010781|Tpsb2|17229|tryptase beta 2
mm9_v1_chr2_+_113839219_113839495	0.189495	bHLH_family.p2	AK082668|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK045761|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK043120|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK044743|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK046235|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK045885|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene
mm9_v1_chr18_+_43367236_43367350	0.189166	bHLH_family.p2	AK042599|Stk32a|269019|serine/threonine kinase 32A	BC055002|Stk32a|269019|serine/threonine kinase 32A	AK044474|Stk32a|269019|serine/threonine kinase 32A	AK036266|Stk32a|269019|serine/threonine kinase 32A	NM_178749|Stk32a|269019|serine/threonine kinase 32A
mm9_v1_chr11_-_101036732_101036756	0.188424	bHLH_family.p2	AF215983|Ccr10|12777|chemokine (C-C motif) receptor 10	AF208238|Ccr10|12777|chemokine (C-C motif) receptor 10	AF215982|Ccr10|12777|chemokine (C-C motif) receptor 10	AK090044|Ccr10|12777|chemokine (C-C motif) receptor 10	BC117043|Ccr10|12777|chemokine (C-C motif) receptor 10	BC120542|Ccr10|12777|chemokine (C-C motif) receptor 10	NM_007721|Ccr10|12777|chemokine (C-C motif) receptor 10
mm9_v1_chr10_+_128184908_128185017	0.187601	bHLH_family.p2	NM_030100|Wibg|78428|within bgcn homolog (Drosophila)	AK020702|Wibg|78428|within bgcn homolog (Drosophila)	AJ459407|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr7_-_109248450_109248554	0.187565	bHLH_family.p2	BC116823|Art5|11875|ADP-ribosyltransferase 5	BC116849|Art5|11875|ADP-ribosyltransferase 5	BC144825|Art5|11875|ADP-ribosyltransferase 5	BC144826|Art5|11875|ADP-ribosyltransferase 5	BC144827|Art5|11875|ADP-ribosyltransferase 5	BC144836|Art5|11875|ADP-ribosyltransferase 5
mm9_v1_chr1_-_36739930_36740027	0.187444	bHLH_family.p2	BC050210|Fam178b|381337|family with sequence similarity 178, member B	AK141223|Fam178b|381337|family with sequence similarity 178, member B	NM_001126046|Fam178b|381337|family with sequence similarity 178, member B	NM_201365|Fam178b|381337|family with sequence similarity 178, member B
mm9_v1_chrX_-_72661900_72661926	0.186655	bHLH_family.p2	AK142198|Mtcp1|17763|mature T-cell proliferation 1	AK140533|Mtcp1|17763|mature T-cell proliferation 1
mm9_v1_chr5_-_92511942_92511942	0.186064	bHLH_family.p2	AK149427|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080797|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr15_-_34424900_34424913	0.185594	bHLH_family.p2	BC125590|Hrsp12|15473|heat-responsive protein 12	BC125592|Hrsp12|15473|heat-responsive protein 12
mm9_v1_chr1_+_137732961_137733002	0.185574	bHLH_family.p2	NM_001130174|Tnnt2|21956|troponin T2, cardiac	NM_001130175|Tnnt2|21956|troponin T2, cardiac	NM_001130177|Tnnt2|21956|troponin T2, cardiac	NM_001130178|Tnnt2|21956|troponin T2, cardiac	NM_001130179|Tnnt2|21956|troponin T2, cardiac	NM_001130180|Tnnt2|21956|troponin T2, cardiac	NM_001130181|Tnnt2|21956|troponin T2, cardiac	NM_011619|Tnnt2|21956|troponin T2, cardiac	AK086260|Tnnt2|21956|troponin T2, cardiac	AK146945|Tnnt2|21956|troponin T2, cardiac	AK163786|Tnnt2|21956|troponin T2, cardiac	AK164592|Tnnt2|21956|troponin T2, cardiac	AK168393|Tnnt2|21956|troponin T2, cardiac	AK169061|Tnnt2|21956|troponin T2, cardiac	L47600|Tnnt2|21956|troponin T2, cardiac	L47599|Tnnt2|21956|troponin T2, cardiac	L47552|Tnnt2|21956|troponin T2, cardiac	L47551|Tnnt2|21956|troponin T2, cardiac	L47549|Tnnt2|21956|troponin T2, cardiac	NM_001136083|Tnnt2|21956|troponin T2, cardiac	L47550|Tnnt2|21956|troponin T2, cardiac
mm9_v1_chr10_-_31165613_31165628	0.185414	bHLH_family.p2	BC141068|Tpd52l1|21987|tumor protein D52-like 1	BC145321|Tpd52l1|21987|tumor protein D52-like 1	BC145322|Tpd52l1|21987|tumor protein D52-like 1	BC171924|Tpd52l1|21987|tumor protein D52-like 1	AK131855|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr6_+_33922645_33922791	0.185075	bHLH_family.p2	
mm9_v1_chr11_+_48615302_48615310	0.184016	bHLH_family.p2	AK166889|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1
mm9_v1_chr7_-_137663474_137663533	0.183929	bHLH_family.p2	DQ093639|Ate1|11907|arginyltransferase 1	DQ093640|Ate1|11907|arginyltransferase 1	NM_001029895|Ate1|11907|arginyltransferase 1	AK138277|Ate1|11907|arginyltransferase 1
mm9_v1_chr18_+_4375599_4375605	0.182957	bHLH_family.p2	AK002680|Mtpap|67440|mitochondrial poly(A) polymerase	AK045203|Mtpap|67440|mitochondrial poly(A) polymerase	AK076565|Mtpap|67440|mitochondrial poly(A) polymerase	BC017535|Mtpap|67440|mitochondrial poly(A) polymerase	AK031070|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr9_-_107612238_107612349	0.182739	bHLH_family.p2	AK140340|Sema3f|20350|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm9_v1_chr11_+_117643971_117643971	0.182487	bHLH_family.p2	AK143862|Tmc8|217356|transmembrane channel-like gene family 8	NM_001195088|Tmc8|217356|transmembrane channel-like gene family 8
mm9_v1_chr3_-_101640061_101640095	0.182396	bHLH_family.p2	AK161057|Mab21l3|242125|mab-21-like 3 (C. elegans)	BC037703|Mab21l3|242125|mab-21-like 3 (C. elegans)	AK172389|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr4_+_154335029_154335081	0.182029	bHLH_family.p2	AK139390|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	AK078170|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	AK087508|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	AK156545|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	NM_010419|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC099863|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC099864|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC099865|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC103539|Hes5|15208|hairy and enhancer of split 5 (Drosophila)
mm9_v1_chr8_-_28239077_28239111	0.180207	bHLH_family.p2	BC098232|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	BC021918|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK151198|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK012459|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK012680|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK028228|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK083122|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	NM_025686|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK017767|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm9_v1_chr11_+_98525660_98525683	0.180036	bHLH_family.p2	AK028645|Gsdma|57911|gasdermin A	AK028698|Gsdma|57911|gasdermin A	NM_021347|Gsdma|57911|gasdermin A	AB033595|Gsdma|57911|gasdermin A	AK029062|Gsdma|57911|gasdermin A
mm9_v1_chr5_+_120961136_120961273	0.179206	bHLH_family.p2	AF261233|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_001177594|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_001177595|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_133221|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	AK157173|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	AK028537|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	BC043689|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
mm9_v1_chr9_-_75246118_75246213	0.179123	bHLH_family.p2	BC048779|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr2_+_74506278_74506366	0.178805	bHLH_family.p2	AB221620|Hoxd13|15433|homeobox D13	NM_008275|Hoxd13|15433|homeobox D13	X99291|Hoxd13|15433|homeobox D13
mm9_v1_chr19_-_34549624_34549641	0.17838	bHLH_family.p2	AF059213|Ch25h|12642|cholesterol 25-hydroxylase	NM_009890|Ch25h|12642|cholesterol 25-hydroxylase	AK152770|Ch25h|12642|cholesterol 25-hydroxylase	AK160657|Ch25h|12642|cholesterol 25-hydroxylase	AK140360|Ch25h|12642|cholesterol 25-hydroxylase
mm9_v1_chr16_+_32271553_32271694	0.178113	bHLH_family.p2	AK009281|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene	NM_183283|2310010M20Rik|69576|RIKEN cDNA 2310010M20 gene
mm9_v1_chr10_-_30320470_30320554	0.177872	bHLH_family.p2	BC048703|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK014181|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK010722|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK032943|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AF532979|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	NM_028604|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)
mm9_v1_chr6_-_97010364_97010406	0.177783	bHLH_family.p2	BC089490|Fam19a4|320701|family with sequence similarity 19, member A4	AK081531|Fam19a4|320701|family with sequence similarity 19, member A4	AK084114|Fam19a4|320701|family with sequence similarity 19, member A4	NM_177233|Fam19a4|320701|family with sequence similarity 19, member A4	AK149355|Fam19a4|320701|family with sequence similarity 19, member A4
mm9_v1_chr15_-_66392539_66392625	0.177528	bHLH_family.p2	BC117823|Tmem71|213068|transmembrane protein 71	BC117824|Tmem71|213068|transmembrane protein 71	AK170268|Tmem71|213068|transmembrane protein 71	AK088711|Tmem71|213068|transmembrane protein 71	NM_172514|Tmem71|213068|transmembrane protein 71
mm9_v1_chr1_-_37973274_37973337	0.176338	bHLH_family.p2	BC147562|Lyg2|332427|lysozyme G-like 2	BC147567|Lyg2|332427|lysozyme G-like 2	AK132442|Lyg2|332427|lysozyme G-like 2	NM_001033427|Lyg2|332427|lysozyme G-like 2
mm9_v1_chr18_+_76219111_76219147	0.175905	bHLH_family.p2	BC018187|Zbtb7c|207259|zinc finger and BTB domain containing 7C	AK156372|Zbtb7c|207259|zinc finger and BTB domain containing 7C
mm9_v1_chr14_-_79880743_79880916	0.175338	bHLH_family.p2	AK161496|Wbp4|22380|WW domain binding protein 4	BC034851|Wbp4|22380|WW domain binding protein 4	AK019160|Wbp4|22380|WW domain binding protein 4	AK160559|Wbp4|22380|WW domain binding protein 4	AK162009|Wbp4|22380|WW domain binding protein 4	AF071184|Wbp4|22380|WW domain binding protein 4
mm9_v1_chr7_-_20819176_20819176	0.17487	bHLH_family.p2	NM_001166742|Vmn1r118|667259|vomeronasal 1 receptor 118	NM_001167150|Gm8453|667094|predicted gene 8453	NM_001167151|Gm4498|100043523|predicted gene 4498
mm9_v1_chr7_-_149838254_149838314	0.174356	bHLH_family.p2	AK146531|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr11_+_120151645_120151699	0.173788	bHLH_family.p2	BC069995|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr14_+_31528800_31528932	0.173778	bHLH_family.p2	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr6_-_116411041_116411195	0.173672	bHLH_family.p2	L42198|Alox5|11689|arachidonate 5-lipoxygenase	AK170016|Alox5|11689|arachidonate 5-lipoxygenase	BC139102|Alox5|11689|arachidonate 5-lipoxygenase	BC141213|Alox5|11689|arachidonate 5-lipoxygenase	AK171191|Alox5|11689|arachidonate 5-lipoxygenase	AK089344|Alox5|11689|arachidonate 5-lipoxygenase	AK137481|Alox5|11689|arachidonate 5-lipoxygenase	AK169938|Alox5|11689|arachidonate 5-lipoxygenase	AK170434|Alox5|11689|arachidonate 5-lipoxygenase	AK170879|Alox5|11689|arachidonate 5-lipoxygenase	AK171413|Alox5|11689|arachidonate 5-lipoxygenase	AK136868|Alox5|11689|arachidonate 5-lipoxygenase	NM_009662|Alox5|11689|arachidonate 5-lipoxygenase
mm9_v1_chr15_-_79604806_79604924	0.173343	bHLH_family.p2	BC005426|Dnalc4|54152|dynein, axonemal, light chain 4	AK002657|Dnalc4|54152|dynein, axonemal, light chain 4	AB010031|Dnalc4|54152|dynein, axonemal, light chain 4	AK132061|Dnalc4|54152|dynein, axonemal, light chain 4	NM_017470|Dnalc4|54152|dynein, axonemal, light chain 4
mm9_v1_chr1_+_154613763_154613962	0.173314	bHLH_family.p2	AK166335|Arpc5|67771|actin related protein 2/3 complex, subunit 5	BC060143|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK166284|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK166725|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK166919|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK008097|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK151656|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK152281|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK159738|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK011348|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK011911|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK017669|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK019149|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK150443|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK150703|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK153262|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK149756|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK151654|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK168264|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK087427|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK151490|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK159438|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK167916|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK168986|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK191774|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK181325|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK187022|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK189385|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK208127|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK209531|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr6_-_113841356_113841375	0.173196	bHLH_family.p2	DQ406822|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK051287|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	BC075643|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_001036684|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr4_+_139179011_139179044	0.172482	bHLH_family.p2	AK044712|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	BC039281|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr13_+_55471092_55471131	0.172444	bHLH_family.p2	NM_016758|Rgs14|51791|regulator of G-protein signaling 14	BC030321|Rgs14|51791|regulator of G-protein signaling 14
mm9_v1_chr18_+_34932278_34932429	0.172328	bHLH_family.p2	AK012724|Fam53c|66306|family with sequence similarity 53, member C	AK205811|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr14_+_12386043_12386066	0.172287	bHLH_family.p2	BC079595|Ptprg|19270|protein tyrosine phosphatase, receptor type, G	NM_008981|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr16_+_5050149_5050235	0.171613	bHLH_family.p2	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr1_-_137268058_137268336	0.171275	bHLH_family.p2	AK199485|Shisa4|77552|shisa homolog 4 (Xenopus laevis)	AK212908|Shisa4|77552|shisa homolog 4 (Xenopus laevis)
mm9_v1_chr18_-_73975022_73975140	0.171012	bHLH_family.p2	BC004709|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	NM_145494|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK043103|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK171157|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK042289|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK039906|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK050933|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK050980|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK077746|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK156403|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK080403|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK162126|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial
mm9_v1_chr15_-_99602827_99602945	0.17037	bHLH_family.p2	AK146417|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145589|Lass5|71949|LAG1 homolog, ceramide synthase 5	AY029533|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK075694|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK146220|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145762|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK010241|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC043059|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC046797|Lass5|71949|LAG1 homolog, ceramide synthase 5	NM_028015|Lass5|71949|LAG1 homolog, ceramide synthase 5
mm9_v1_chr10_-_126497197_126497239	0.170043	bHLH_family.p2	AK158026|March9|216438|membrane-associated ring finger (C3HC4) 9	NM_001033262|March9|216438|membrane-associated ring finger (C3HC4) 9
mm9_v1_chr12_+_103521251_103521297	0.168881	bHLH_family.p2	AK154506|Rin3|217835|Ras and Rab interactor 3	AK032205|Rin3|217835|Ras and Rab interactor 3	NM_177620|Rin3|217835|Ras and Rab interactor 3	AY265356|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr11_-_59025711_59025721	0.168857	bHLH_family.p2	
mm9_v1_chr15_-_102341090_102341132	0.166597	bHLH_family.p2	AK166435|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr8_-_72433344_72433376	0.166549	bHLH_family.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr6_+_35202672_35202740	0.166297	bHLH_family.p2	AK171831|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK007895|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK155176|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK158055|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK004512|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene
mm9_v1_chr4_-_132895019_132895110	0.165852	bHLH_family.p2	BC048824|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr1_-_174825081_174825085	0.164049	bHLH_family.p2	BC061125|Apcs|20219|serum amyloid P-component
mm9_v1_chr7_-_133709864_133709898	0.163337	bHLH_family.p2	BC024855|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	NM_146200|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK168160|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK168174|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK076165|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK152693|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK160078|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C
mm9_v1_chr4_+_8617613_8617703	0.163048	bHLH_family.p2	AK035953|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr9_+_44142772_44142803	0.162789	bHLH_family.p2	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr13_-_38619746_38619798	0.162481	bHLH_family.p2	AK224996|Txndc5|105245|thioredoxin domain containing 5	AK224981|Txndc5|105245|thioredoxin domain containing 5	AK225017|Txndc5|105245|thioredoxin domain containing 5
mm9_v1_chr3_+_96449506_96449522	0.162223	bHLH_family.p2	NM_001081053|Itga10|213119|integrin, alpha 10	BC115770|Itga10|213119|integrin, alpha 10
mm9_v1_chrX_-_7722800_7722927	0.162124	bHLH_family.p2	BC006580|Rbm3|19652|RNA binding motif protein 3	BC086491|Rbm3|19652|RNA binding motif protein 3	BC059098|Rbm3|19652|RNA binding motif protein 3	AK167800|Rbm3|19652|RNA binding motif protein 3	AK088031|Rbm3|19652|RNA binding motif protein 3	AK003720|Rbm3|19652|RNA binding motif protein 3	AK007354|Rbm3|19652|RNA binding motif protein 3	AK049575|Rbm3|19652|RNA binding motif protein 3	AK167967|Rbm3|19652|RNA binding motif protein 3	AK168338|Rbm3|19652|RNA binding motif protein 3	AK133795|Rbm3|19652|RNA binding motif protein 3	AK168285|Rbm3|19652|RNA binding motif protein 3	AK154044|Rbm3|19652|RNA binding motif protein 3	BC106176|Rbm3|19652|RNA binding motif protein 3	NM_001166409|Rbm3|19652|RNA binding motif protein 3	NM_001166410|Rbm3|19652|RNA binding motif protein 3	NM_001166411|Rbm3|19652|RNA binding motif protein 3	NM_016809|Rbm3|19652|RNA binding motif protein 3
mm9_v1_chr7_-_133618335_133618666	0.161054	bHLH_family.p2	AF020526|Sh2b1|20399|SH2B adaptor protein 1	AF380422|Sh2b1|20399|SH2B adaptor protein 1	AF421138|Sh2b1|20399|SH2B adaptor protein 1	AF421139|Sh2b1|20399|SH2B adaptor protein 1	BC051978|Sh2b1|20399|SH2B adaptor protein 1	AK154655|Sh2b1|20399|SH2B adaptor protein 1	AK148085|Sh2b1|20399|SH2B adaptor protein 1	AK168439|Sh2b1|20399|SH2B adaptor protein 1	AK170444|Sh2b1|20399|SH2B adaptor protein 1	AK171328|Sh2b1|20399|SH2B adaptor protein 1	NM_001081459|Sh2b1|20399|SH2B adaptor protein 1	NM_011363|Sh2b1|20399|SH2B adaptor protein 1
mm9_v1_chr6_-_30643681_30643723	0.160511	bHLH_family.p2	BC031892|Tsga14|83922|testis specific gene A14	NM_031998|Tsga14|83922|testis specific gene A14	AK161461|Tsga14|83922|testis specific gene A14	AK166974|Tsga14|83922|testis specific gene A14	AK019270|Tsga14|83922|testis specific gene A14	AK132495|Tsga14|83922|testis specific gene A14	AJ278891|Tsga14|83922|testis specific gene A14	AK006059|Tsga14|83922|testis specific gene A14	AK170213|Tsga14|83922|testis specific gene A14
mm9_v1_chr10_-_117183413_117183498	0.15988	bHLH_family.p2	BC057101|Slc35e3|215436|solute carrier family 35, member E3	NM_029875|Slc35e3|215436|solute carrier family 35, member E3	BC006601|Slc35e3|215436|solute carrier family 35, member E3
mm9_v1_chr5_-_91831834_91832019	0.159704	bHLH_family.p2	AK050206|Btc|12223|betacellulin, epidermal growth factor family member	L08394|Btc|12223|betacellulin, epidermal growth factor family member	AK046658|Btc|12223|betacellulin, epidermal growth factor family member	BC119152|Btc|12223|betacellulin, epidermal growth factor family member	BC119154|Btc|12223|betacellulin, epidermal growth factor family member	BC144906|Btc|12223|betacellulin, epidermal growth factor family member	AK076272|Btc|12223|betacellulin, epidermal growth factor family member	NM_007568|Btc|12223|betacellulin, epidermal growth factor family member	AK164633|Btc|12223|betacellulin, epidermal growth factor family member
mm9_v1_chr14_-_14793678_14793804	0.159537	bHLH_family.p2	AK147003|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK007440|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK008899|Thoc7|66231|THO complex 7 homolog (Drosophila)	NM_001013578|Thoc7|66231|THO complex 7 homolog (Drosophila)	NM_025435|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK013319|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK005176|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC042209|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK010958|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC027113|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC054419|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC116919|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC116945|Thoc7|66231|THO complex 7 homolog (Drosophila)
mm9_v1_chr17_-_25934035_25934080	0.159436	bHLH_family.p2	BC132177|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr6_-_148844725_148844758	0.158976	bHLH_family.p2	AK140744|Caprin2|232560|caprin family member 2
mm9_v1_chr1_-_136201384_136201419	0.158428	bHLH_family.p2	AK078263|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	AK170782|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
mm9_v1_chr6_-_57929295_57929295	0.158105	bHLH_family.p2	NM_053238|Vmn1r25|113865|vomeronasal 1 receptor 25
mm9_v1_chr12_+_17355232_17355314	0.157853	bHLH_family.p2	AK160864|Nol10|217431|nucleolar protein 10	AK166160|Nol10|217431|nucleolar protein 10	AK164400|Nol10|217431|nucleolar protein 10	AK148210|Nol10|217431|nucleolar protein 10	BC086676|Nol10|217431|nucleolar protein 10	NM_001008421|Nol10|217431|nucleolar protein 10
mm9_v1_chr13_-_23557675_23557769	0.157651	bHLH_family.p2	AK142596|Btn1a1|12231|butyrophilin, subfamily 1, member A1	BC011497|Btn1a1|12231|butyrophilin, subfamily 1, member A1	BC009817|Btn1a1|12231|butyrophilin, subfamily 1, member A1	AK021333|Btn1a1|12231|butyrophilin, subfamily 1, member A1	AK145168|Btn1a1|12231|butyrophilin, subfamily 1, member A1	NM_013483|Btn1a1|12231|butyrophilin, subfamily 1, member A1
mm9_v1_chr6_-_83781704_83781750	0.156795	bHLH_family.p2	AK140686|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK159287|Paip2b|232164|poly(A) binding protein interacting protein 2B	NM_146169|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr11_-_99354449_99354450	0.15613	bHLH_family.p2	BC003472|Krt23|94179|keratin 23	AK145247|Krt23|94179|keratin 23
mm9_v1_chr13_-_55932570_55932578	0.155699	bHLH_family.p2	BC012696|Pitx1|18740|paired-like homeodomain transcription factor 1
mm9_v1_chr7_-_75893927_75894127	0.155537	bHLH_family.p2	DQ861996|Arrdc4|66412|arrestin domain containing 4	BC017528|Arrdc4|66412|arrestin domain containing 4	AK010022|Arrdc4|66412|arrestin domain containing 4	AK037198|Arrdc4|66412|arrestin domain containing 4	NM_001042592|Arrdc4|66412|arrestin domain containing 4	NM_025549|Arrdc4|66412|arrestin domain containing 4	AK010352|Arrdc4|66412|arrestin domain containing 4
mm9_v1_chrX_+_45461901_45462257	0.155114	bHLH_family.p2	AK172086|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	NM_133213|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF428102|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK164538|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK078835|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK087627|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK085520|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF367247|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	BC140977|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
mm9_v1_chr11_+_100406921_100407015	0.154952	bHLH_family.p2	BC050805|Ttc25|74407|tetratricopeptide repeat domain 25	NM_028918|Ttc25|74407|tetratricopeptide repeat domain 25	AK161541|Ttc25|74407|tetratricopeptide repeat domain 25	AK162855|Ttc25|74407|tetratricopeptide repeat domain 25	AK016657|Ttc25|74407|tetratricopeptide repeat domain 25
mm9_v1_chr9_+_51021793_51021824	0.1549	bHLH_family.p2	Z54283|Pou2af1|18985|POU domain, class 2, associating factor 1	NM_011136|Pou2af1|18985|POU domain, class 2, associating factor 1	U43788|Pou2af1|18985|POU domain, class 2, associating factor 1	AK088587|Pou2af1|18985|POU domain, class 2, associating factor 1	AK135080|Pou2af1|18985|POU domain, class 2, associating factor 1	BC058611|Pou2af1|18985|POU domain, class 2, associating factor 1
mm9_v1_chrX_+_133584130_133584209	0.154812	bHLH_family.p2	AK154624|Fam199x|245622|family with sequence similarity 199, X-linked	NM_146261|Fam199x|245622|family with sequence similarity 199, X-linked	BC031748|Fam199x|245622|family with sequence similarity 199, X-linked	AK039695|Fam199x|245622|family with sequence similarity 199, X-linked
mm9_v1_chr7_-_52379703_52379767	0.154576	bHLH_family.p2	AK150738|Rps11|27207|ribosomal protein S11	BC012641|Rps11|27207|ribosomal protein S11	NM_013725|Rps11|27207|ribosomal protein S11
mm9_v1_chr16_-_35939034_35939112	0.154554	bHLH_family.p2	BC120494|Dtx3l|209200|deltex 3-like (Drosophila)	BC137694|Dtx3l|209200|deltex 3-like (Drosophila)	NM_001013371|Dtx3l|209200|deltex 3-like (Drosophila)
mm9_v1_chr2_+_163899842_163899948	0.15418	bHLH_family.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chrX_-_153930168_153930218	0.153846	bHLH_family.p2	BC058688|Sms|20603|spermine synthase
mm9_v1_chr19_-_6067723_6067866	0.153468	bHLH_family.p2	AF480070|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK039028|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK155475|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK014166|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK134512|Tm7sf2|73166|transmembrane 7 superfamily member 2	BC014769|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK037325|Tm7sf2|73166|transmembrane 7 superfamily member 2	NM_028454|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK040016|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK043687|Tm7sf2|73166|transmembrane 7 superfamily member 2
mm9_v1_chr7_+_51723446_51723520	0.153218	bHLH_family.p2	AK002872|Josd2|66124|Josephin domain containing 2	BC018244|Josd2|66124|Josephin domain containing 2
mm9_v1_chr11_+_96912130_96912167	0.153165	bHLH_family.p2	NM_001081434|Osbpl7|71240|oxysterol binding protein-like 7	AK154677|Osbpl7|71240|oxysterol binding protein-like 7	AK171585|Osbpl7|71240|oxysterol binding protein-like 7
mm9_v1_chr6_+_91937103_91937154	0.15302	bHLH_family.p2	NM_172731|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5	BC145502|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5	BC150786|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5
mm9_v1_chr3_+_146067605_146067687	0.150848	bHLH_family.p2	AK049080|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK173064|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK031356|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	BC031527|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	BC021749|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	NM_138744|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK043865|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein
mm9_v1_chr16_+_17980657_17980657	0.150767	bHLH_family.p2	NM_016983|Vpreb2|22363|pre-B lymphocyte gene 2
mm9_v1_chr4_+_118241644_118241647	0.150728	bHLH_family.p2	AK021161|Wdr65|68625|WD repeat domain 65
mm9_v1_chr4_+_63205780_63205910	0.150662	bHLH_family.p2	NM_024173|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK081611|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK007596|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK010131|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK168972|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK169079|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK088712|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	BC003429|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK003563|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK152699|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK159558|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AB076406|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	BC088836|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1
mm9_v1_chr1_+_93247592_93247649	0.150553	bHLH_family.p2	AK146580|Klhl30|70788|kelch-like 30 (Drosophila)	AK148398|Klhl30|70788|kelch-like 30 (Drosophila)	AK086025|Klhl30|70788|kelch-like 30 (Drosophila)	NM_027551|Klhl30|70788|kelch-like 30 (Drosophila)
mm9_v1_chr7_-_134519509_134519563	0.149712	bHLH_family.p2	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr1_-_173177238_173177241	0.14946	bHLH_family.p2	AK167016|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr18_+_74375754_74375784	0.149372	bHLH_family.p2	AK017941|Cxxc1|74322|CXXC finger 1 (PHD domain)	AK146688|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr10_-_61246611_61246701	0.149317	bHLH_family.p2	AF336305|H2afy2|404634|H2A histone family, member Y2	NM_207000|H2afy2|404634|H2A histone family, member Y2	BC045140|H2afy2|404634|H2A histone family, member Y2	AK165020|H2afy2|404634|H2A histone family, member Y2	AK018355|H2afy2|404634|H2A histone family, member Y2	BC046794|H2afy2|404634|H2A histone family, member Y2	AK078464|H2afy2|404634|H2A histone family, member Y2	AK032636|H2afy2|404634|H2A histone family, member Y2	AK020744|H2afy2|404634|H2A histone family, member Y2
mm9_v1_chr12_-_71328603_71328613	0.148542	bHLH_family.p2	BC013636|Pygl|110095|liver glycogen phosphorylase	AF288783|Pygl|110095|liver glycogen phosphorylase	AK167337|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr16_-_13903055_13903162	0.147972	bHLH_family.p2	BC005541|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK165587|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK030613|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK033107|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK163696|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK004611|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1
mm9_v1_chr5_+_137437946_137437998	0.147938	bHLH_family.p2	NM_025562|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008078|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008323|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	BC010783|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK004479|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK004917|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008916|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm9_v1_chr14_+_51627603_51627610	0.147499	bHLH_family.p2	AY226990|Rnase10|75019|ribonuclease, RNase A family, 10 (non-active)	NM_029145|Rnase10|75019|ribonuclease, RNase A family, 10 (non-active)	BC141116|Rnase10|75019|ribonuclease, RNase A family, 10 (non-active)
mm9_v1_chr19_+_43856793_43856893	0.147142	bHLH_family.p2	NM_013806|Abcc2|12780|ATP-binding cassette, sub-family C (CFTR/MRP), member 2	AF227274|Abcc2|12780|ATP-binding cassette, sub-family C (CFTR/MRP), member 2	AF282772|Abcc2|12780|ATP-binding cassette, sub-family C (CFTR/MRP), member 2	AF282773|Abcc2|12780|ATP-binding cassette, sub-family C (CFTR/MRP), member 2
mm9_v1_chr7_+_29581063_29581076	0.146837	bHLH_family.p2	AK168472|Rinl|320435|Ras and Rab interactor-like
mm9_v1_chr5_-_123183255_123183351	0.14682	bHLH_family.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr10_+_59754384_59754499	0.14602	bHLH_family.p2	AK159622|Psap|19156|prosaposin	AK210181|Psap|19156|prosaposin	BC036266|Psap|19156|prosaposin	AK180106|Psap|19156|prosaposin	AK194829|Psap|19156|prosaposin	AK197804|Psap|19156|prosaposin	AK201095|Psap|19156|prosaposin	AK203509|Psap|19156|prosaposin
mm9_v1_chr2_+_29933228_29933262	0.14602	bHLH_family.p2	AK154801|Pkn3|263803|protein kinase N3
mm9_v1_chr3_-_86352170_86352368	0.145964	bHLH_family.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr8_+_47620401_47620467	0.145835	bHLH_family.p2	BC006692|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr4_-_140330097_140330124	0.145362	bHLH_family.p2	AB013850|Padi4|18602|peptidyl arginine deiminase, type IV	AK137625|Padi4|18602|peptidyl arginine deiminase, type IV	NM_011061|Padi4|18602|peptidyl arginine deiminase, type IV
mm9_v1_chr6_-_125330478_125330540	0.145072	bHLH_family.p2	BC026778|Plekhg6|213522|pleckstrin homology domain containing, family G (with RhoGef domain) member 6	NM_198604|Plekhg6|213522|pleckstrin homology domain containing, family G (with RhoGef domain) member 6
mm9_v1_chr6_-_72389491_72389552	0.144803	bHLH_family.p2	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr3_+_137286635_137286835	0.144319	bHLH_family.p2	AK018944|Ddit4l|73284|DNA-damage-inducible transcript 4-like	NM_030143|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK006617|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK053333|Ddit4l|73284|DNA-damage-inducible transcript 4-like	BC038131|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AF335325|Ddit4l|73284|DNA-damage-inducible transcript 4-like
mm9_v1_chr12_-_71328615_71328621	0.144273	bHLH_family.p2	AK041189|Pygl|110095|liver glycogen phosphorylase	AK140321|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr18_-_80666366_80666458	0.144129	bHLH_family.p2	BC053435|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	NM_026295|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	AK044530|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	AK156617|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
mm9_v1_chr6_-_135197901_135197982	0.144017	bHLH_family.p2	NM_001080552|Gsg1|14840|germ cell-specific gene 1	BC023009|Gsg1|14840|germ cell-specific gene 1
mm9_v1_chr7_-_29349236_29349293	0.143669	bHLH_family.p2	AK017713|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr17_-_66235094_66235137	0.143044	bHLH_family.p2	NM_009067|Ralbp1|19765|ralA binding protein 1	AK138197|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr16_-_10796897_10796916	0.143013	bHLH_family.p2	K02926|Prm1|19118|protamine 1	M27500|Prm1|19118|protamine 1	AK006377|Prm1|19118|protamine 1	AK007068|Prm1|19118|protamine 1	BC049599|Prm1|19118|protamine 1	BC059733|Prm1|19118|protamine 1	NM_013637|Prm1|19118|protamine 1	X14003|Prm1|19118|protamine 1	AK018980|Prm1|19118|protamine 1
mm9_v1_chr7_+_108496574_108496658	0.142961	bHLH_family.p2	AK172210|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	NM_001040111|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	AK137455|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	AK140646|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm9_v1_chr11_+_103053625_103053722	0.142669	bHLH_family.p2	AK158820|Fmnl1|57778|formin-like 1
mm9_v1_chr13_+_78337168_78337277	0.141856	bHLH_family.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chr17_+_29169612_29169642	0.141424	bHLH_family.p2	AK152704|Srsf3|20383|serine/arginine-rich splicing factor 3	AK009895|Srsf3|20383|serine/arginine-rich splicing factor 3	AK011657|Srsf3|20383|serine/arginine-rich splicing factor 3	AK078891|Srsf3|20383|serine/arginine-rich splicing factor 3	AK134177|Srsf3|20383|serine/arginine-rich splicing factor 3	AK135298|Srsf3|20383|serine/arginine-rich splicing factor 3	AK141440|Srsf3|20383|serine/arginine-rich splicing factor 3	AK145089|Srsf3|20383|serine/arginine-rich splicing factor 3	AK145600|Srsf3|20383|serine/arginine-rich splicing factor 3	AK145715|Srsf3|20383|serine/arginine-rich splicing factor 3	AK152411|Srsf3|20383|serine/arginine-rich splicing factor 3	AK152779|Srsf3|20383|serine/arginine-rich splicing factor 3	AK153073|Srsf3|20383|serine/arginine-rich splicing factor 3	AK153209|Srsf3|20383|serine/arginine-rich splicing factor 3	AK154046|Srsf3|20383|serine/arginine-rich splicing factor 3	AK150912|Srsf3|20383|serine/arginine-rich splicing factor 3	AK088122|Srsf3|20383|serine/arginine-rich splicing factor 3	AK146010|Srsf3|20383|serine/arginine-rich splicing factor 3	AK085863|Srsf3|20383|serine/arginine-rich splicing factor 3	AK146610|Srsf3|20383|serine/arginine-rich splicing factor 3	AK146253|Srsf3|20383|serine/arginine-rich splicing factor 3	BC068111|Srsf3|20383|serine/arginine-rich splicing factor 3	BC083316|Srsf3|20383|serine/arginine-rich splicing factor 3	BC071196|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr2_-_156138199_156138439	0.141303	bHLH_family.p2	AK220179|Scand1|19018|SCAN domain-containing 1	BC010724|Scand1|19018|SCAN domain-containing 1	AF220501|Scand1|19018|SCAN domain-containing 1	AF106473|Scand1|19018|SCAN domain-containing 1	AK088253|Scand1|19018|SCAN domain-containing 1	AK009115|Scand1|19018|SCAN domain-containing 1	NM_020255|Scand1|19018|SCAN domain-containing 1
mm9_v1_chr11_+_99776064_99776064	0.141182	bHLH_family.p2	NM_001126323|Gm11565|670550|predicted gene 11565
mm9_v1_chr2_+_112307393_112307430	0.140865	bHLH_family.p2	AK045622|2900064A13Rik|73024|RIKEN cDNA 2900064A13 gene
mm9_v1_chr6_-_124688630_124688780	0.140788	bHLH_family.p2	AK150509|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6	AK132509|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6	NM_001077705|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6
mm9_v1_chr4_-_124804291_124804295	0.140552	bHLH_family.p2	AY920404|Zc3h12a|230738|zinc finger CCCH type containing 12A
mm9_v1_chr14_-_40286109_40286196	0.139374	bHLH_family.p2	BC137838|Nrg3|18183|neuregulin 3	BC144964|Nrg3|18183|neuregulin 3
mm9_v1_chr9_+_110235922_110235986	0.138803	bHLH_family.p2	AK035432|Scap|235623|SREBF chaperone
mm9_v1_chr17_-_25410858_25410858	0.138035	bHLH_family.p2	AK166657|Ube2i|22196|ubiquitin-conjugating enzyme E2I	NM_001177609|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr4_+_153544821_153544830	0.137686	bHLH_family.p2	NM_001162977|Megf6|230971|multiple EGF-like-domains 6
mm9_v1_chr4_+_61947463_61947577	0.137089	bHLH_family.p2	NM_025286|Slc31a2|20530|solute carrier family 31, member 2	AK008473|Slc31a2|20530|solute carrier family 31, member 2	BC099447|Slc31a2|20530|solute carrier family 31, member 2	AK007579|Slc31a2|20530|solute carrier family 31, member 2	AK152812|Slc31a2|20530|solute carrier family 31, member 2	AK003269|Slc31a2|20530|solute carrier family 31, member 2	AK151612|Slc31a2|20530|solute carrier family 31, member 2	BC029183|Slc31a2|20530|solute carrier family 31, member 2
mm9_v1_chr6_+_30589217_30589220	0.136501	bHLH_family.p2	BC052661|Cpa1|109697|carboxypeptidase A1	NM_025350|Cpa1|109697|carboxypeptidase A1
mm9_v1_chr19_+_10703592_10703743	0.135706	bHLH_family.p2	AK191685|Ddb1|13194|damage specific DNA binding protein 1	AK195557|Ddb1|13194|damage specific DNA binding protein 1	AK195744|Ddb1|13194|damage specific DNA binding protein 1	AK004284|Ddb1|13194|damage specific DNA binding protein 1
mm9_v1_chr9_-_88626613_88626700	0.135627	bHLH_family.p2	BC116240|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	NM_007536|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	BC053965|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d
mm9_v1_chr18_-_36926866_36926900	0.134399	bHLH_family.p2	
mm9_v1_chr18_+_4375583_4375596	0.134373	bHLH_family.p2	AK011546|Mtpap|67440|mitochondrial poly(A) polymerase	AK036760|Mtpap|67440|mitochondrial poly(A) polymerase	NM_026157|Mtpap|67440|mitochondrial poly(A) polymerase	AK154747|Mtpap|67440|mitochondrial poly(A) polymerase	AK166038|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr2_-_101489613_101489698	0.133747	bHLH_family.p2	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr4_+_115823089_115823207	0.133573	bHLH_family.p2	NM_026651|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	NM_029786|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	AK002638|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	AB053220|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	BC011201|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	AK183969|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase
mm9_v1_chr2_-_60560659_60560699	0.133317	bHLH_family.p2	AK036439|Itgb6|16420|integrin beta 6	NM_001159564|Itgb6|16420|integrin beta 6	AK085900|Itgb6|16420|integrin beta 6
mm9_v1_chr2_-_130250376_130250436	0.13266	bHLH_family.p2	NM_001114541|Fam113a|319513|family with sequence similarity 113, member A	BC064802|Fam113a|319513|family with sequence similarity 113, member A	AK031469|Fam113a|319513|family with sequence similarity 113, member A
mm9_v1_chr14_-_47407948_47408042	0.132639	bHLH_family.p2	AK154479|Cnih|12793|cornichon homolog (Drosophila)	AK152432|Cnih|12793|cornichon homolog (Drosophila)	AK168154|Cnih|12793|cornichon homolog (Drosophila)	AK011200|Cnih|12793|cornichon homolog (Drosophila)	BC034868|Cnih|12793|cornichon homolog (Drosophila)	AK002293|Cnih|12793|cornichon homolog (Drosophila)	AF022811|Cnih|12793|cornichon homolog (Drosophila)	NM_009919|Cnih|12793|cornichon homolog (Drosophila)
mm9_v1_chr1_+_34555274_34555279	0.132154	bHLH_family.p2	AB008910|Prss39|21755|protease, serine, 39	BC115665|Prss39|21755|protease, serine, 39	BC115666|Prss39|21755|protease, serine, 39	NM_009355|Prss39|21755|protease, serine, 39	BC049616|Prss39|21755|protease, serine, 39
mm9_v1_chr2_-_6051177_6051230	0.131861	bHLH_family.p2	AK132370|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	BC025867|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	BC029968|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	AK077380|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	NM_001159657|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	NM_144883|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene
mm9_v1_chr4_-_127938134_127938138	0.131547	bHLH_family.p2	BC061030|Hmgb4|69317|high-mobility group box 4	AK005588|Hmgb4|69317|high-mobility group box 4	BC048744|Hmgb4|69317|high-mobility group box 4	BC087910|Hmgb4|69317|high-mobility group box 4	BC087934|Hmgb4|69317|high-mobility group box 4	NM_027036|Hmgb4|69317|high-mobility group box 4
mm9_v1_chr10_+_40403084_40403122	0.131177	bHLH_family.p2	AK033488|9030224M15Rik|327747|RIKEN cDNA 9030224M15 gene	NM_177793|9030224M15Rik|327747|RIKEN cDNA 9030224M15 gene	BC147316|9030224M15Rik|327747|RIKEN cDNA 9030224M15 gene	BC147317|9030224M15Rik|327747|RIKEN cDNA 9030224M15 gene
mm9_v1_chr4_+_111105832_111105976	0.131157	bHLH_family.p2	BC051512|Bend5|67621|BEN domain containing 5
mm9_v1_chrX_+_71516128_71516339	0.130946	bHLH_family.p2	NM_052835|Rpl10|110954|ribosomal protein 10	AK146217|Rpl10|110954|ribosomal protein 10	AK011022|Rpl10|110954|ribosomal protein 10	AK088777|Rpl10|110954|ribosomal protein 10	AK144831|Rpl10|110954|ribosomal protein 10	AK151416|Rpl10|110954|ribosomal protein 10	AK151655|Rpl10|110954|ribosomal protein 10	AK152123|Rpl10|110954|ribosomal protein 10	AK152854|Rpl10|110954|ribosomal protein 10	AK153345|Rpl10|110954|ribosomal protein 10	AK160618|Rpl10|110954|ribosomal protein 10	AK167966|Rpl10|110954|ribosomal protein 10	AK168854|Rpl10|110954|ribosomal protein 10	BC086917|Rpl10|110954|ribosomal protein 10	M93980|Rpl10|110954|ribosomal protein 10	AK014054|Rpl10|110954|ribosomal protein 10	AK151736|Rpl10|110954|ribosomal protein 10	AK166610|Rpl10|110954|ribosomal protein 10	AK168250|Rpl10|110954|ribosomal protein 10	AK012561|Rpl10|110954|ribosomal protein 10	AK167239|Rpl10|110954|ribosomal protein 10	BC092383|Rpl10|110954|ribosomal protein 10	BC098204|Rpl10|110954|ribosomal protein 10	X75312|Rpl10|110954|ribosomal protein 10	BC048872|Rpl10|110954|ribosomal protein 10	BC099437|Rpl10|110954|ribosomal protein 10	BC024901|Rpl10|110954|ribosomal protein 10	BC082293|Rpl10|110954|ribosomal protein 10	BC083327|Rpl10|110954|ribosomal protein 10	BC006068|Rpl10|110954|ribosomal protein 10
mm9_v1_chr3_+_5218545_5218658	0.130395	bHLH_family.p2	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr11_-_69499014_69499062	0.130155	bHLH_family.p2	BC069900|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	AK009514|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	NM_001159505|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	NM_023517|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13	AK170351|Tnfsf13|69583|tumor necrosis factor (ligand) superfamily, member 13
mm9_v1_chr8_-_108089811_108089973	0.129238	bHLH_family.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr7_-_36340918_36340946	0.12913	bHLH_family.p2	BC051553|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	NM_033080|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr3_+_100726415_100726537	0.12886	bHLH_family.p2	AK150574|Trim45|229644|tripartite motif-containing 45	AK153571|Trim45|229644|tripartite motif-containing 45	NM_001165952|Trim45|229644|tripartite motif-containing 45	NM_001165953|Trim45|229644|tripartite motif-containing 45	NM_194343|Trim45|229644|tripartite motif-containing 45	BC057358|Trim45|229644|tripartite motif-containing 45
mm9_v1_chr7_-_36340213_36340340	0.127827	bHLH_family.p2	AK179860|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	AK183336|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr15_-_9678531_9678622	0.12738	bHLH_family.p2	AK041992|Spef2|320277|sperm flagellar 2	BC132098|Spef2|320277|sperm flagellar 2	BC132288|Spef2|320277|sperm flagellar 2	NM_177123|Spef2|320277|sperm flagellar 2	AK048961|Spef2|320277|sperm flagellar 2
mm9_v1_chr12_+_112509308_112509323	0.12724	bHLH_family.p2	AK017204|Amn|93835|amnionless	BC087954|Amn|93835|amnionless	AF320619|Amn|93835|amnionless	NM_033603|Amn|93835|amnionless	AK002318|Amn|93835|amnionless
mm9_v1_chr4_+_129784799_129784867	0.126943	bHLH_family.p2	AK075978|Pef1|67898|penta-EF hand domain containing 1	NM_026441|Pef1|67898|penta-EF hand domain containing 1	AK007394|Pef1|67898|penta-EF hand domain containing 1	AK013238|Pef1|67898|penta-EF hand domain containing 1	AK046247|Pef1|67898|penta-EF hand domain containing 1	BC019191|Pef1|67898|penta-EF hand domain containing 1
mm9_v1_chr15_-_83082156_83082203	0.126599	bHLH_family.p2	AK149186|A4galt|239559|alpha 1,4-galactosyltransferase	AK162529|A4galt|239559|alpha 1,4-galactosyltransferase	AY371179|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001170954|A4galt|239559|alpha 1,4-galactosyltransferase	AK139833|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001004150|A4galt|239559|alpha 1,4-galactosyltransferase
mm9_v1_chr2_-_44782719_44782794	0.126498	bHLH_family.p2	AK028468|Gtdc1|227835|glycosyltransferase-like domain containing 1	AK163943|Gtdc1|227835|glycosyltransferase-like domain containing 1
mm9_v1_chr12_-_71328622_71328669	0.126047	bHLH_family.p2	AK145989|Pygl|110095|liver glycogen phosphorylase	NM_133198|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr11_+_81859212_81859265	0.125516	bHLH_family.p2	NM_013654|Ccl7|20306|chemokine (C-C motif) ligand 7	AK078827|Ccl7|20306|chemokine (C-C motif) ligand 7	BC061126|Ccl7|20306|chemokine (C-C motif) ligand 7	S71251|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128193|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128194|Ccl7|20306|chemokine (C-C motif) ligand 7	L04694|Ccl7|20306|chemokine (C-C motif) ligand 7	S50588|Ccl7|20306|chemokine (C-C motif) ligand 7	Z12297|Ccl7|20306|chemokine (C-C motif) ligand 7
mm9_v1_chr12_+_75028976_75029036	0.124847	bHLH_family.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr4_-_102699296_102699446	0.124202	bHLH_family.p2	AF054843|Insl5|23919|insulin-like 5	BC010968|Insl5|23919|insulin-like 5	AF076971|Insl5|23919|insulin-like 5	AF133817|Insl5|23919|insulin-like 5	NM_011831|Insl5|23919|insulin-like 5	AF054842|Insl5|23919|insulin-like 5
mm9_v1_chr17_+_33947466_33947491	0.123815	bHLH_family.p2	AK002623|Kank3|80880|KN motif and ankyrin repeat domains 3	AK132011|Kank3|80880|KN motif and ankyrin repeat domains 3	BC061055|Kank3|80880|KN motif and ankyrin repeat domains 3	NM_030697|Kank3|80880|KN motif and ankyrin repeat domains 3	BC037741|Kank3|80880|KN motif and ankyrin repeat domains 3
mm9_v1_chr2_+_132088957_132088969	0.123776	bHLH_family.p2	AY159802|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr7_+_54007201_54007213	0.123567	bHLH_family.p2	M11130|Saa2|20209|serum amyloid A 2	NM_011314|Saa2|20209|serum amyloid A 2	L22190|Saa2|20209|serum amyloid A 2
mm9_v1_chr7_+_28390872_28390878	0.122661	bHLH_family.p2	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr10_-_80317936_80317966	0.122269	bHLH_family.p2	BC081444|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK003062|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK009317|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC027511|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK007462|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK012446|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK013355|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_025349|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr10_-_60227439_60227519	0.122132	bHLH_family.p2	AK084569|Unc5b|107449|unc-5 homolog B (C. elegans)	AK041547|Unc5b|107449|unc-5 homolog B (C. elegans)	AK159205|Unc5b|107449|unc-5 homolog B (C. elegans)
mm9_v1_chr8_+_46593141_46593271	0.121889	bHLH_family.p2	AK171632|Sorbs2|234214|sorbin and SH3 domain containing 2	NM_172752|Sorbs2|234214|sorbin and SH3 domain containing 2	AK139388|Sorbs2|234214|sorbin and SH3 domain containing 2	BC151038|Sorbs2|234214|sorbin and SH3 domain containing 2	BC172140|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr18_+_38409902_38409977	0.121813	bHLH_family.p2	NM_024179|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK035876|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK002437|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK171837|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK079423|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	BC002117|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK141675|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK172900|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene
mm9_v1_chr12_+_89598984_89599091	0.121102	bHLH_family.p2	AK011310|Adck1|72113|aarF domain containing kinase 1	AK154839|Adck1|72113|aarF domain containing kinase 1
mm9_v1_chr8_-_119256732_119256890	0.121091	bHLH_family.p2	AY273799|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	AK015452|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	AK142084|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	BC058956|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	NM_029441|Cdyl2|75796|chromodomain protein, Y chromosome-like 2
mm9_v1_chr9_-_119099510_119099524	0.120959	bHLH_family.p2	BC100471|Slc22a14|382113|solute carrier family 22 (organic cation transporter), member 14	NM_001037749|Slc22a14|382113|solute carrier family 22 (organic cation transporter), member 14	AK133291|Slc22a14|382113|solute carrier family 22 (organic cation transporter), member 14
mm9_v1_chr11_+_70027581_70027626	0.120752	bHLH_family.p2	AB041591|Slc16a11|216867|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm9_v1_chr7_-_52379686_52379702	0.12023	bHLH_family.p2	U93864|Rps11|27207|ribosomal protein S11	AK005147|Rps11|27207|ribosomal protein S11
mm9_v1_chr9_+_21229348_21229458	0.120152	bHLH_family.p2	AK172231|Dnm2|13430|dynamin 2	AK170574|Dnm2|13430|dynamin 2	AK005012|Dnm2|13430|dynamin 2	AK157844|Dnm2|13430|dynamin 2	AK150046|Dnm2|13430|dynamin 2	AK171566|Dnm2|13430|dynamin 2	NM_001039520|Dnm2|13430|dynamin 2	AK171049|Dnm2|13430|dynamin 2	L31398|Dnm2|13430|dynamin 2
mm9_v1_chr7_+_51502089_51502113	0.119628	bHLH_family.p2	AK169789|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	NM_025880|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK036099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr6_+_40578829_40578829	0.119483	bHLH_family.p2	AY229885|Mgam|232714|maltase-glucoamylase	AY229886|Mgam|232714|maltase-glucoamylase	EU937529|Mgam|232714|maltase-glucoamylase	NM_001171003|Mgam|232714|maltase-glucoamylase
mm9_v1_chr1_-_135557934_135557977	0.118545	bHLH_family.p2	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr1_+_173275799_173275833	0.118488	bHLH_family.p2	BC049606|Pfdn2|18637|prefoldin 2	NM_011070|Pfdn2|18637|prefoldin 2
mm9_v1_chr5_+_27588462_27588514	0.118011	bHLH_family.p2	NM_001136060|Dpp6|13483|dipeptidylpeptidase 6	AK031903|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr7_-_30875415_30875528	0.11787	bHLH_family.p2	BC019790|Zfp566|72556|zinc finger protein 566	AK012367|Zfp566|72556|zinc finger protein 566	NM_152814|Zfp566|72556|zinc finger protein 566
mm9_v1_chr2_-_152656236_152656402	0.117112	bHLH_family.p2	L35049|Bcl2l1|12048|BCL2-like 1	U51279|Bcl2l1|12048|BCL2-like 1	AK172250|Bcl2l1|12048|BCL2-like 1	U51277|Bcl2l1|12048|BCL2-like 1	AK146461|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr13_-_104968472_104968556	0.11636	bHLH_family.p2	BC021756|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK084373|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK013956|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK167749|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK012141|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK010346|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK163342|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK149832|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_001093759|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_001093760|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_025879|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene
mm9_v1_chr2_-_60591836_60591898	0.116332	bHLH_family.p2	AK159851|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chrX_+_155970593_155970627	0.116258	bHLH_family.p2	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr19_+_53214934_53215104	0.115946	bHLH_family.p2	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chr12_+_103521406_103521481	0.115726	bHLH_family.p2	AK166196|Rin3|217835|Ras and Rab interactor 3	AK171301|Rin3|217835|Ras and Rab interactor 3	AK154522|Rin3|217835|Ras and Rab interactor 3	AK171311|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr19_+_10059060_10059150	0.115417	bHLH_family.p2	AK180886|Fth1|14319|ferritin heavy chain 1
mm9_v1_chr5_+_134575561_134575653	0.115034	bHLH_family.p2	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr4_+_130500298_130500338	0.114939	bHLH_family.p2	AK014342|Matn1|17180|matrilin 1, cartilage matrix protein	NM_010769|Matn1|17180|matrilin 1, cartilage matrix protein	BC047140|Matn1|17180|matrilin 1, cartilage matrix protein	U35035|Matn1|17180|matrilin 1, cartilage matrix protein
mm9_v1_chr17_-_51318632_51318637	0.114721	bHLH_family.p2	AK154975|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr13_+_3537308_3537410	0.114239	bHLH_family.p2	NM_008112|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK143681|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK150655|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK167659|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK149958|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK078514|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK079690|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK090083|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK137761|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK143633|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK013104|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK159734|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK166317|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK007871|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK078144|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK083063|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK150356|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK152250|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	BC055341|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	BC024971|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK153381|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK169299|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr18_+_4375607_4375646	0.114199	bHLH_family.p2	BC057643|Mtpap|67440|mitochondrial poly(A) polymerase	AK135537|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr7_+_51136529_51136569	0.113901	bHLH_family.p2	AK087426|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	AF019979|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	NM_019928|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	BC100716|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	BC100717|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	BC100718|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	BC100719|Klk4|56640|kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)
mm9_v1_chr2_+_84910387_84910514	0.113671	bHLH_family.p2	BC025657|Tnks1bp1|228140|tankyrase 1 binding protein 1
mm9_v1_chr16_-_16829386_16829548	0.113651	bHLH_family.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr15_-_98025972_98025972	0.113507	bHLH_family.p2	NM_001011733|Olfr288|545140|olfactory receptor 288
mm9_v1_chr3_-_94462687_94462757	0.113486	bHLH_family.p2	AF002860|Tuft1|22156|tuftelin 1	BC019213|Tuft1|22156|tuftelin 1	AK132488|Tuft1|22156|tuftelin 1	AF047704|Tuft1|22156|tuftelin 1	NM_011656|Tuft1|22156|tuftelin 1	AK171705|Tuft1|22156|tuftelin 1
mm9_v1_chr19_-_29596672_29596689	0.113335	bHLH_family.p2	
mm9_v1_chr10_+_75031386_75031408	0.112478	bHLH_family.p2	L17334|Ggt1|14598|gamma-glutamyltransferase 1	AK079235|Ggt1|14598|gamma-glutamyltransferase 1
mm9_v1_chr12_+_85983845_85983845	0.112389	bHLH_family.p2	BC103771|Vrtn|432677|vertebrae development homolog (pig)	NM_001033776|Vrtn|432677|vertebrae development homolog (pig)
mm9_v1_chr3_+_145421870_145422044	0.111961	bHLH_family.p2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr15_-_103085703_103085858	0.111948	bHLH_family.p2	BC062171|Nfe2|18022|nuclear factor, erythroid derived 2	NM_008685|Nfe2|18022|nuclear factor, erythroid derived 2	L09600|Nfe2|18022|nuclear factor, erythroid derived 2
mm9_v1_chr1_-_173165051_173165079	0.111924	bHLH_family.p2	
mm9_v1_chr5_+_129106980_129107017	0.110983	bHLH_family.p2	AY509002|Fzd10|93897|frizzled homolog 10 (Drosophila)	NM_175284|Fzd10|93897|frizzled homolog 10 (Drosophila)	BC117759|Fzd10|93897|frizzled homolog 10 (Drosophila)
mm9_v1_chr17_-_88197333_88197424	0.110694	bHLH_family.p2	AB052939|Kcnk12|210741|potassium channel, subfamily K, member 12	NM_199251|Kcnk12|210741|potassium channel, subfamily K, member 12
mm9_v1_chr2_-_11423651_11423672	0.110626	bHLH_family.p2	AF294617|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK154607|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	BC057320|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr8_+_86184863_86184976	0.110579	bHLH_family.p2	AF061263|Gipc1|67903|GIPC PDZ domain containing family, member 1
mm9_v1_chr4_+_125781197_125781263	0.110343	bHLH_family.p2	NM_001145827|Stk40|74178|serine/threonine kinase 40	NM_028800|Stk40|74178|serine/threonine kinase 40	AK154780|Stk40|74178|serine/threonine kinase 40	AY336057|Stk40|74178|serine/threonine kinase 40	BC046981|Stk40|74178|serine/threonine kinase 40
mm9_v1_chrX_-_108651553_108651553	0.110304	bHLH_family.p2	NM_025949|Rps6ka6|67071|ribosomal protein S6 kinase polypeptide 6
mm9_v1_chr19_+_57435498_57435553	0.110128	bHLH_family.p2	NM_145505|Fam160b1|226252|family with sequence similarity 160, member B1	AK046518|Fam160b1|226252|family with sequence similarity 160, member B1	AK147386|Fam160b1|226252|family with sequence similarity 160, member B1	AK172373|Fam160b1|226252|family with sequence similarity 160, member B1	AK054539|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chr19_+_38171568_38171616	0.11003	bHLH_family.p2	BC053698|Gpr120|107221|G protein-coupled receptor 120	NM_181748|Gpr120|107221|G protein-coupled receptor 120	AK131616|Gpr120|107221|G protein-coupled receptor 120	AB115769|Gpr120|107221|G protein-coupled receptor 120	AY288424|Gpr120|107221|G protein-coupled receptor 120
mm9_v1_chr19_-_39887217_39887303	0.109545	bHLH_family.p2	AF047727|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40	BC139471|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40	BC139472|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40	NM_010004|Cyp2c40|13099|cytochrome P450, family 2, subfamily c, polypeptide 40
mm9_v1_chr19_+_6080032_6080037	0.108511	bHLH_family.p2	AK076800|BC048609|433215|cDNA sequence BC048609	BC048609|BC048609|433215|cDNA sequence BC048609	NM_001111317|BC048609|433215|cDNA sequence BC048609
mm9_v1_chr10_-_62254998_62255005	0.10808	bHLH_family.p2	AF465615|Ccar1|67500|cell division cycle and apoptosis regulator 1	AK012111|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC060130|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC039939|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr12_-_104895280_104895290	0.108054	bHLH_family.p2	NM_007618|Serpina6|12401|serine (or cysteine) peptidase inhibitor, clade A, member 6	X70533|Serpina6|12401|serine (or cysteine) peptidase inhibitor, clade A, member 6
mm9_v1_chr18_-_58369579_58369752	0.108017	bHLH_family.p2	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chrX_+_34731239_34731452	0.108007	bHLH_family.p2	AK146283|Rnf113a1|69942|ring finger protein 113A1	AK013178|Rnf113a1|69942|ring finger protein 113A1	BC024906|Rnf113a1|69942|ring finger protein 113A1	NM_153503|Rnf113a1|69942|ring finger protein 113A1
mm9_v1_chr19_+_9090816_9090839	0.107742	bHLH_family.p2	BC040459|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr3_+_105261699_105261733	0.107482	bHLH_family.p2	BC141097|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	BC141098|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107781|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107782|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	NM_019931|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr11_-_116167956_116168087	0.107398	bHLH_family.p2	AF014461|Exoc7|53413|exocyst complex component 7	AK140450|Exoc7|53413|exocyst complex component 7	BC053710|Exoc7|53413|exocyst complex component 7	BC028927|Exoc7|53413|exocyst complex component 7	AK167769|Exoc7|53413|exocyst complex component 7	AK162868|Exoc7|53413|exocyst complex component 7	AK169928|Exoc7|53413|exocyst complex component 7	AK087601|Exoc7|53413|exocyst complex component 7	NM_001162872|Exoc7|53413|exocyst complex component 7	NM_016857|Exoc7|53413|exocyst complex component 7
mm9_v1_chr12_+_37835132_37835270	0.107227	bHLH_family.p2	AK028352|Meox2|17286|mesenchyme homeobox 2	NM_008584|Meox2|17286|mesenchyme homeobox 2	AK031152|Meox2|17286|mesenchyme homeobox 2	BC002076|Meox2|17286|mesenchyme homeobox 2	AK142690|Meox2|17286|mesenchyme homeobox 2	Z16406|Meox2|17286|mesenchyme homeobox 2
mm9_v1_chr6_-_53018566_53018625	0.10684	bHLH_family.p2	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr15_-_96529121_96529237	0.106453	bHLH_family.p2	AK164568|Slc38a2|67760|solute carrier family 38, member 2	AK018767|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr18_+_65183519_65183560	0.106274	bHLH_family.p2	AF277232|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like	BC039746|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like	BC071210|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr2_+_121282819_121282836	0.106043	bHLH_family.p2	NM_026318|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	AK003580|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	BC038469|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	AK009109|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene
mm9_v1_chr18_+_54113094_54113152	0.10604	bHLH_family.p2	AJ279839|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr7_-_88711829_88711866	0.105993	bHLH_family.p2	AK036674|Fsd2|244091|fibronectin type III and SPRY domain containing 2	AK028142|Fsd2|244091|fibronectin type III and SPRY domain containing 2	NM_172904|Fsd2|244091|fibronectin type III and SPRY domain containing 2
mm9_v1_chr2_+_80193710_80193811	0.105923	bHLH_family.p2	
mm9_v1_chr16_+_4937622_4937664	0.105855	bHLH_family.p2	AK189949|Mgrn1|17237|mahogunin, ring finger 1	AK194956|Mgrn1|17237|mahogunin, ring finger 1	AK218167|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr12_+_79849894_79849915	0.10529	bHLH_family.p2	AK133187|Mpp5|56217|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	BC067404|Mpp5|56217|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm9_v1_chr3_-_53667683_53667736	0.105238	bHLH_family.p2	BC051554|Ufm1|67890|ubiquitin-fold modifier 1	AK008280|Ufm1|67890|ubiquitin-fold modifier 1	AK007788|Ufm1|67890|ubiquitin-fold modifier 1	AK167321|Ufm1|67890|ubiquitin-fold modifier 1	AK148146|Ufm1|67890|ubiquitin-fold modifier 1	AK089948|Ufm1|67890|ubiquitin-fold modifier 1	AK167301|Ufm1|67890|ubiquitin-fold modifier 1	AK011737|Ufm1|67890|ubiquitin-fold modifier 1	AK166332|Ufm1|67890|ubiquitin-fold modifier 1	BC061065|Ufm1|67890|ubiquitin-fold modifier 1	NM_026435|Ufm1|67890|ubiquitin-fold modifier 1
mm9_v1_chr13_-_67710581_67710643	0.104812	bHLH_family.p2	AK170565|AA987161|380856|expressed sequence AA987161	BC047145|AA987161|380856|expressed sequence AA987161	AK137425|AA987161|380856|expressed sequence AA987161
mm9_v1_chr11_+_120466872_120466883	0.104744	bHLH_family.p2	AK205961|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr5_+_109098283_109098358	0.104592	bHLH_family.p2	AK169998|Idua|15932|iduronidase, alpha-L-	AK031414|Idua|15932|iduronidase, alpha-L-	AK045330|Idua|15932|iduronidase, alpha-L-	BC057935|Idua|15932|iduronidase, alpha-L-
mm9_v1_chr1_-_82583298_82583393	0.104376	bHLH_family.p2	AK142553|Col4a4|12829|collagen, type IV, alpha 4	AF169388|Col4a4|12829|collagen, type IV, alpha 4
mm9_v1_chr4_-_119331384_119331549	0.104152	bHLH_family.p2	BC024373|Guca2b|14916|guanylate cyclase activator 2b (retina)	U67800|Guca2b|14916|guanylate cyclase activator 2b (retina)	AK002364|Guca2b|14916|guanylate cyclase activator 2b (retina)	NM_008191|Guca2b|14916|guanylate cyclase activator 2b (retina)	U90727|Guca2b|14916|guanylate cyclase activator 2b (retina)
mm9_v1_chr7_+_52151432_52151509	0.104125	bHLH_family.p2	NM_027376|Fuz|70300|fuzzy homolog (Drosophila)	AK134650|Fuz|70300|fuzzy homolog (Drosophila)	AK168939|Fuz|70300|fuzzy homolog (Drosophila)	AK045745|Fuz|70300|fuzzy homolog (Drosophila)	AK033247|Fuz|70300|fuzzy homolog (Drosophila)	BC045601|Fuz|70300|fuzzy homolog (Drosophila)	AK011195|Fuz|70300|fuzzy homolog (Drosophila)
mm9_v1_chr4_+_109079704_109079727	0.103537	bHLH_family.p2	AK048659|Ttc39a|230603|tetratricopeptide repeat domain 39A	NM_153392|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK082733|Ttc39a|230603|tetratricopeptide repeat domain 39A	BC023883|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr17_+_72022598_72022608	0.103485	bHLH_family.p2	NM_177087|Fam179a|320159|family with sequence similarity 179, member A
mm9_v1_chr11_+_96880055_96880076	0.103239	bHLH_family.p2	AM295492|Sp6|83395|trans-acting transcription factor 6	AK137686|Sp6|83395|trans-acting transcription factor 6
mm9_v1_chr4_+_106295053_106295112	0.103104	bHLH_family.p2	AK028895|Ttc22|230576|tetratricopeptide repeat domain 22	NM_177667|Ttc22|230576|tetratricopeptide repeat domain 22	BC096484|Ttc22|230576|tetratricopeptide repeat domain 22	BC132162|Ttc22|230576|tetratricopeptide repeat domain 22
mm9_v1_chr2_-_32837527_32837604	0.102733	bHLH_family.p2	AF232061|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856043|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856044|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856045|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856046|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AJ245936|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	Y17802|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	BC090993|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	NM_019488|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK141193|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK170319|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK081806|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK155792|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8
mm9_v1_chr9_-_123893240_123893240	0.102464	bHLH_family.p2	BC127143|Ccr1l1|12770|chemokine (C-C motif) receptor 1-like 1	BC128466|Ccr1l1|12770|chemokine (C-C motif) receptor 1-like 1	NM_007718|Ccr1l1|12770|chemokine (C-C motif) receptor 1-like 1
mm9_v1_chr7_-_31605995_31605995	0.102073	bHLH_family.p2	NM_001168512|Ffar2|233079|free fatty acid receptor 2
mm9_v1_chr9_-_104239997_104240057	0.101988	bHLH_family.p2	AF210243|Acpp|56318|acid phosphatase, prostate	AK020693|Acpp|56318|acid phosphatase, prostate	AK029273|Acpp|56318|acid phosphatase, prostate	AK163330|Acpp|56318|acid phosphatase, prostate	BC139826|Acpp|56318|acid phosphatase, prostate	NM_019807|Acpp|56318|acid phosphatase, prostate	NM_207668|Acpp|56318|acid phosphatase, prostate	AK076383|Acpp|56318|acid phosphatase, prostate
mm9_v1_chrX_+_155970637_155970677	0.101783	bHLH_family.p2	BC075674|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	AK145159|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr9_+_85739048_85739158	0.101682	bHLH_family.p2	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr7_-_13583494_13583549	0.100784	bHLH_family.p2	BC013272|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC013335|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	AJ223959|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	AK144301|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	NM_009512|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5
mm9_v1_chr11_-_119948078_119948092	0.100403	bHLH_family.p2	BC141108|Azi1|12009|5-azacytidine induced gene 1
mm9_v1_chr7_+_34880449_34880449	0.100043	bHLH_family.p2	NM_001099330|Gm12776|100043868|predicted gene 12776
mm9_v1_chr17_+_35704429_35704481	0.099775	bHLH_family.p2	AK037046|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	BC107265|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	BC107266|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	NM_175148|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene	AK009013|2300002M23Rik|69542|RIKEN cDNA 2300002M23 gene
mm9_v1_chr3_-_101640128_101640145	0.0995624	bHLH_family.p2	NM_172295|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr7_+_50817739_50817739	0.0994083	bHLH_family.p2	AK155078|Zfp658|210104|zinc finger protein 658	NM_001008549|Zfp658|210104|zinc finger protein 658
mm9_v1_chr18_-_36942673_36942858	0.0993981	bHLH_family.p2	AK211613|Hars|15115|histidyl-tRNA synthetase	AK011685|Hars|15115|histidyl-tRNA synthetase	AK077437|Hars|15115|histidyl-tRNA synthetase	AK166826|Hars|15115|histidyl-tRNA synthetase	AK150081|Hars|15115|histidyl-tRNA synthetase	AK152329|Hars|15115|histidyl-tRNA synthetase	BC020088|Hars|15115|histidyl-tRNA synthetase	AK088824|Hars|15115|histidyl-tRNA synthetase	AK146922|Hars|15115|histidyl-tRNA synthetase	AK166892|Hars|15115|histidyl-tRNA synthetase	U39473|Hars|15115|histidyl-tRNA synthetase	NM_008214|Hars|15115|histidyl-tRNA synthetase
mm9_v1_chr2_+_119456102_119456195	0.099211	bHLH_family.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr7_+_148809577_148809656	0.099141	bHLH_family.p2	AK195123|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr7_+_49515422_49515422	0.0990177	bHLH_family.p2	NM_001105058|Vmn2r61|637873|vomeronasal 2, receptor 61
mm9_v1_chr13_-_98976043_98976393	0.0987148	bHLH_family.p2	BC138030|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC075734|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC098331|Rgnef|110596|Rho-guanine nucleotide exchange factor	NM_012026|Rgnef|110596|Rho-guanine nucleotide exchange factor	U73199|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC022978|Rgnef|110596|Rho-guanine nucleotide exchange factor	AK173325|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr4_-_117602333_117602367	0.0984534	bHLH_family.p2	AK053914|Artn|11876|artemin	NM_009711|Artn|11876|artemin
mm9_v1_chr13_+_68721096_68721152	0.0984232	bHLH_family.p2	AK009264|Fastkd3|69577|FAST kinase domains 3	AK033189|Fastkd3|69577|FAST kinase domains 3	NM_027123|Fastkd3|69577|FAST kinase domains 3	AK148902|Fastkd3|69577|FAST kinase domains 3	AK031142|Fastkd3|69577|FAST kinase domains 3	AK032530|Fastkd3|69577|FAST kinase domains 3	AK036778|Fastkd3|69577|FAST kinase domains 3	BC042506|Fastkd3|69577|FAST kinase domains 3	BC060688|Fastkd3|69577|FAST kinase domains 3
mm9_v1_chr4_-_132768403_132768450	0.0983803	bHLH_family.p2	AK140464|Gpr3|14748|G-protein coupled receptor 3	AK158917|Gpr3|14748|G-protein coupled receptor 3	AK140302|Gpr3|14748|G-protein coupled receptor 3	NM_008154|Gpr3|14748|G-protein coupled receptor 3
mm9_v1_chr9_+_3404047_3404117	0.097823	bHLH_family.p2	BC125483|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC125485|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK083386|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK045423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	NM_027545|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK014327|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK031423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC100536|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC051218|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC043480|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)
mm9_v1_chr7_-_133935952_133936049	0.0976777	bHLH_family.p2	BC001993|Ppp4c|56420|protein phosphatase 4, catalytic subunit	NM_019674|Ppp4c|56420|protein phosphatase 4, catalytic subunit	AF088911|Ppp4c|56420|protein phosphatase 4, catalytic subunit	BC013806|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr15_-_81524457_81524636	0.0972614	bHLH_family.p2	AK086273|Chadl|214685|chondroadherin-like	AK139481|Chadl|214685|chondroadherin-like
mm9_v1_chr5_+_67652034_67652135	0.0958476	bHLH_family.p2	BC016570|Tmem33|67878|transmembrane protein 33	BC023966|Tmem33|67878|transmembrane protein 33	AK019127|Tmem33|67878|transmembrane protein 33
mm9_v1_chr5_-_111239017_111239099	0.0957494	bHLH_family.p2	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr6_+_97757012_97757093	0.0955586	bHLH_family.p2	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr12_-_87165448_87165516	0.0953046	bHLH_family.p2	AK152230|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	BC004591|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AF270646|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	NM_021446|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AK004480|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene
mm9_v1_chr6_+_122258946_122259119	0.0951594	bHLH_family.p2	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr3_+_94736993_94737043	0.0951364	bHLH_family.p2	BC011202|Selenbp1|20341|selenium binding protein 1	NM_009150|Selenbp1|20341|selenium binding protein 1
mm9_v1_chr19_-_46107484_46107619	0.0949568	bHLH_family.p2	AK210031|Ldb1|16825|LIM domain binding 1
mm9_v1_chr3_+_90345082_90345194	0.09486	bHLH_family.p2	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr2_+_181599056_181599106	0.0947903	bHLH_family.p2	NM_025901|Polr3k|67005|polymerase (RNA) III (DNA directed) polypeptide K
mm9_v1_chr2_-_181598918_181598962	0.0944858	bHLH_family.p2	AK013066|2810410D24Rik|69254|RIKEN cDNA 2810410D24 gene
mm9_v1_chr17_+_34176381_34176393	0.093785	bHLH_family.p2	NM_009926|Col11a2|12815|collagen, type XI, alpha 2	U16789|Col11a2|12815|collagen, type XI, alpha 2
mm9_v1_chr12_+_35669432_35669444	0.093731	bHLH_family.p2	AK077203|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	NM_029294|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1	BC109355|Prps1l1|75456|phosphoribosyl pyrophosphate synthetase 1-like 1
mm9_v1_chr10_+_80657435_80657438	0.0937158	bHLH_family.p2	AK084504|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK136697|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK009897|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene	AK033837|2310050B05Rik|69678|RIKEN cDNA 2310050B05 gene
mm9_v1_chr5_+_111082466_111082502	0.0936112	bHLH_family.p2	NM_027156|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	AK141361|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	BC060646|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	AK152599|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
mm9_v1_chr4_-_62833079_62833164	0.0932177	bHLH_family.p2	BC022225|Kif12|16552|kinesin family member 12	AK018598|Kif12|16552|kinesin family member 12	NM_010616|Kif12|16552|kinesin family member 12
mm9_v1_chr8_+_116963542_116963590	0.093215	bHLH_family.p2	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr16_-_88627910_88627910	0.0931213	bHLH_family.p2	AK010217|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene	NM_027173|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene
mm9_v1_chr3_-_68930928_68931049	0.0927032	bHLH_family.p2	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr5_-_28117963_28118089	0.0926082	bHLH_family.p2	AF104261|Paxip1|55982|PAX interacting (with transcription-activation domain) protein 1
mm9_v1_chr13_+_41744811_41744811	0.0921402	bHLH_family.p2	AK037195|Gm5082|328231|predicted gene 5082	NM_177808|Gm5082|328231|predicted gene 5082
mm9_v1_chr4_+_135412061_135412061	0.0920301	bHLH_family.p2	AK169071|Srsf10|14105|serine/arginine-rich splicing factor 10
mm9_v1_chr9_+_102408467_102408467	0.0908727	bHLH_family.p2	AJ293727|Ky|16716|kyphoscoliosis peptidase	NM_024291|Ky|16716|kyphoscoliosis peptidase
mm9_v1_chr4_-_147874557_147874570	0.0908228	bHLH_family.p2	BC023373|Angptl7|654812|angiopoietin-like 7	AK031675|Angptl7|654812|angiopoietin-like 7	NM_001039554|Angptl7|654812|angiopoietin-like 7
mm9_v1_chr4_+_155336456_155336496	0.090726	bHLH_family.p2	BC026939|Fam132a|67389|family with sequence similarity 132, member A
mm9_v1_chrX_+_109352657_109352657	0.0906809	bHLH_family.p2	AK016644|4933403O08Rik|71030|RIKEN cDNA 4933403O08 gene	NM_001177389|4933403O08Rik|71030|RIKEN cDNA 4933403O08 gene
mm9_v1_chr12_-_104895307_104895340	0.0903877	bHLH_family.p2	AK145842|Serpina6|12401|serine (or cysteine) peptidase inhibitor, clade A, member 6
mm9_v1_chr2_-_4984983_4985031	0.0902746	bHLH_family.p2	BC061185|Optn|71648|optineurin	NM_181848|Optn|71648|optineurin
mm9_v1_chr11_+_105836521_105836521	0.0902358	bHLH_family.p2	M55333|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	NM_009598|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm9_v1_chr1_-_173225039_173225152	0.0899525	bHLH_family.p2	AK187472|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1	BC021936|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1	AK003897|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1	NM_025388|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1
mm9_v1_chr11_-_47192793_47192803	0.08961	bHLH_family.p2	BC130019|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)	AK040974|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)	NM_011891|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm9_v1_chr2_+_131763454_131763725	0.0893005	bHLH_family.p2	AK215651|Prnp|19122|prion protein	AK205534|Prnp|19122|prion protein	AK213884|Prnp|19122|prion protein	AK206219|Prnp|19122|prion protein
mm9_v1_chr4_+_43576357_43576371	0.0892426	bHLH_family.p2	AK007665|Creb3|12913|cAMP responsive element binding protein 3
mm9_v1_chr9_-_122930668_122930689	0.0888279	bHLH_family.p2	AK016980|Gm9856|100126228|predicted gene 9856
mm9_v1_chr11_-_118151298_118151557	0.0887705	bHLH_family.p2	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr9_-_61762220_61762398	0.0885088	bHLH_family.p2	BC013252|Rplp1|56040|ribosomal protein, large, P1	BC092536|Rplp1|56040|ribosomal protein, large, P1	NM_018853|Rplp1|56040|ribosomal protein, large, P1	BC092088|Rplp1|56040|ribosomal protein, large, P1	BC091747|Rplp1|56040|ribosomal protein, large, P1	BC058685|Rplp1|56040|ribosomal protein, large, P1	U29402|Rplp1|56040|ribosomal protein, large, P1	AK007832|Rplp1|56040|ribosomal protein, large, P1	AK088070|Rplp1|56040|ribosomal protein, large, P1	AK169347|Rplp1|56040|ribosomal protein, large, P1	AK010656|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chr17_-_95149352_95149379	0.088008	bHLH_family.p2	BC099943|Mettl4|76781|methyltransferase like 4
mm9_v1_chr2_+_21289168_21289199	0.0879482	bHLH_family.p2	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr9_-_88626434_88626600	0.0871677	bHLH_family.p2	AK165576|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d	BC027536|Bcl2a1d|12047|B-cell leukemia/lymphoma 2 related protein A1d
mm9_v1_chr14_+_32150060_32150096	0.0870323	bHLH_family.p2	AJ012475|Capn7|12339|calpain 7
mm9_v1_chr7_+_51502120_51502163	0.0866327	bHLH_family.p2	AK165177|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK010334|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK049154|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK169796|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK169836|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK172418|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK162303|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	BC016099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr4_+_94405963_94405990	0.0865564	bHLH_family.p2	BC050824|Tek|21687|endothelial-specific receptor tyrosine kinase	D13738|Tek|21687|endothelial-specific receptor tyrosine kinase	NM_013690|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr9_-_65917524_65917537	0.0863961	bHLH_family.p2	BC138950|Snx22|382083|sorting nexin 22	BC138951|Snx22|382083|sorting nexin 22	AK032028|Snx22|382083|sorting nexin 22	NM_001025612|Snx22|382083|sorting nexin 22
mm9_v1_chr1_+_92499999_92500134	0.0861894	bHLH_family.p2	NM_133805|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	BC021488|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK142989|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK079522|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	BC024421|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK079111|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK162502|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK090013|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK145899|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK088323|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm9_v1_chr8_+_119780918_119781056	0.0861201	bHLH_family.p2	NM_001163262|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	AK085367|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	BC158118|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr9_-_37063214_37063322	0.0858859	bHLH_family.p2	AF121081|Slc37a2|56857|solute carrier family 37 (glycerol-3-phosphate transporter), member 2	AK031045|Slc37a2|56857|solute carrier family 37 (glycerol-3-phosphate transporter), member 2	AK079823|Slc37a2|56857|solute carrier family 37 (glycerol-3-phosphate transporter), member 2	NM_001145960|Slc37a2|56857|solute carrier family 37 (glycerol-3-phosphate transporter), member 2	NM_020258|Slc37a2|56857|solute carrier family 37 (glycerol-3-phosphate transporter), member 2
mm9_v1_chr6_-_5143755_5143945	0.0858295	bHLH_family.p2	BC012706|Pon1|18979|paraoxonase 1	U72636|Pon1|18979|paraoxonase 1	U32684|Pon1|18979|paraoxonase 1	NM_011134|Pon1|18979|paraoxonase 1
mm9_v1_chr9_+_39999900_39999944	0.085427	bHLH_family.p2	AK172368|Zfp202|80902|zinc finger protein 202	NM_030713|Zfp202|80902|zinc finger protein 202	AF292648|Zfp202|80902|zinc finger protein 202	AF292649|Zfp202|80902|zinc finger protein 202	AK170181|Zfp202|80902|zinc finger protein 202
mm9_v1_chr9_-_20871536_20871536	0.0851616	bHLH_family.p2	DQ286956|Zglp1|100009600|zinc finger, GATA-like protein 1	NM_001103168|Zglp1|100009600|zinc finger, GATA-like protein 1
mm9_v1_chr10_+_60638341_60638497	0.0846759	bHLH_family.p2	AJ249392|Tbata|65971|thymus, brain and testes associated	AK038284|Tbata|65971|thymus, brain and testes associated	AK088524|Tbata|65971|thymus, brain and testes associated	AY243459|Tbata|65971|thymus, brain and testes associated	AY243458|Tbata|65971|thymus, brain and testes associated
mm9_v1_chr8_-_13974679_13974776	0.0845758	bHLH_family.p2	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr12_-_104895293_104895303	0.084569	bHLH_family.p2	BC013632|Serpina6|12401|serine (or cysteine) peptidase inhibitor, clade A, member 6
mm9_v1_chr17_+_25716140_25716151	0.0840246	bHLH_family.p2	AK172374|Lmf1|76483|lipase maturation factor 1	AK053241|Lmf1|76483|lipase maturation factor 1	AK142235|Lmf1|76483|lipase maturation factor 1	AK010312|Lmf1|76483|lipase maturation factor 1
mm9_v1_chr16_+_98218479_98218528	0.0834665	bHLH_family.p2	AK045713|B230307C23Rik|245305|RIKEN cDNA B230307C23 gene	BC056174|B230307C23Rik|245305|RIKEN cDNA B230307C23 gene
mm9_v1_chr7_+_52661329_52661329	0.083226	bHLH_family.p2	NM_010596|Kcna7|16495|potassium voltage-gated channel, shaker-related subfamily, member 7
mm9_v1_chr7_-_29177654_29177722	0.083039	bHLH_family.p2	BC083314|Med29|67224|mediator complex subunit 29	BC023192|Med29|67224|mediator complex subunit 29	AK005112|Med29|67224|mediator complex subunit 29	AK013006|Med29|67224|mediator complex subunit 29	NM_026042|Med29|67224|mediator complex subunit 29
mm9_v1_chr7_-_21838802_21838802	0.0825169	bHLH_family.p2	NM_001166715|Vmn1r120|435953|vomeronasal 1 receptor 120
mm9_v1_chr14_-_33998251_33998251	0.0812187	bHLH_family.p2	NM_001146022|Wdfy4|545030|WD repeat and FYVE domain containing 4
mm9_v1_chr7_-_13583329_13583480	0.080835	bHLH_family.p2	AF072760|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC115421|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC145823|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC145825|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5
mm9_v1_chr2_-_35992076_35992223	0.0806527	bHLH_family.p2	AK008110|Rbm18|67889|RNA binding motif protein 18	AK021243|Rbm18|67889|RNA binding motif protein 18	AK036252|Rbm18|67889|RNA binding motif protein 18	BC005540|Rbm18|67889|RNA binding motif protein 18	AK035348|Rbm18|67889|RNA binding motif protein 18	AK036220|Rbm18|67889|RNA binding motif protein 18	AK135109|Rbm18|67889|RNA binding motif protein 18	NM_001159635|Rbm18|67889|RNA binding motif protein 18	NM_026434|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr1_+_89480596_89480642	0.0802362	bHLH_family.p2	NM_001160165|Neu2|23956|neuraminidase 2	AF139059|Neu2|23956|neuraminidase 2
mm9_v1_chr19_-_46413027_46413167	0.0797691	bHLH_family.p2	AK134110|Cuedc2|67116|CUE domain containing 2	AK178562|Cuedc2|67116|CUE domain containing 2	AK186231|Cuedc2|67116|CUE domain containing 2	AK207375|Cuedc2|67116|CUE domain containing 2	AK003457|Cuedc2|67116|CUE domain containing 2	AK013884|Cuedc2|67116|CUE domain containing 2	BC003442|Cuedc2|67116|CUE domain containing 2	AK008842|Cuedc2|67116|CUE domain containing 2	NM_001164290|Cuedc2|67116|CUE domain containing 2	NM_001164291|Cuedc2|67116|CUE domain containing 2	NM_001164292|Cuedc2|67116|CUE domain containing 2	NM_001164293|Cuedc2|67116|CUE domain containing 2	NM_001164294|Cuedc2|67116|CUE domain containing 2	NM_001164295|Cuedc2|67116|CUE domain containing 2	NM_024192|Cuedc2|67116|CUE domain containing 2
mm9_v1_chr6_+_66986592_66986609	0.079735	bHLH_family.p2	AK029473|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr17_+_48455465_48455489	0.0797134	bHLH_family.p2	AK170621|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK155881|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK171605|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK036709|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK046672|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK171587|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AY522648|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	NM_177083|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK171230|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene	AK171603|B430306N03Rik|320148|RIKEN cDNA B430306N03 gene
mm9_v1_chr11_-_99911864_99911864	0.0795826	bHLH_family.p2	M27734|Krt31|16660|keratin 31	NM_010659|Krt31|16660|keratin 31
mm9_v1_chr11_-_99354417_99354437	0.0791423	bHLH_family.p2	BC019972|Krt23|94179|keratin 23	AF102849|Krt23|94179|keratin 23	NM_033373|Krt23|94179|keratin 23	AK036901|Krt23|94179|keratin 23	AK036954|Krt23|94179|keratin 23
mm9_v1_chr7_+_29649467_29649473	0.0791139	bHLH_family.p2	AK009151|Lgals7|16858|lectin, galactose binding, soluble 7	AK003153|Lgals7|16858|lectin, galactose binding, soluble 7	AK008773|Lgals7|16858|lectin, galactose binding, soluble 7
mm9_v1_chr8_-_126506732_126506777	0.0786966	bHLH_family.p2	AK081782|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	AK011569|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	AF266284|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm9_v1_chr4_-_44723311_44723311	0.0781749	bHLH_family.p2	M97013|Pax5|18507|paired box gene 5	NM_008782|Pax5|18507|paired box gene 5
mm9_v1_chr8_+_87560809_87560830	0.0780004	bHLH_family.p2	AK154985|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	AK155760|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	NM_145390|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr11_+_114529837_114529938	0.0779309	bHLH_family.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr8_+_128434349_128434353	0.0778981	bHLH_family.p2	AK220424|BC021891|234878|cDNA sequence BC021891	NM_145608|BC021891|234878|cDNA sequence BC021891	BC021891|BC021891|234878|cDNA sequence BC021891
mm9_v1_chr10_+_59747208_59747231	0.0774718	bHLH_family.p2	AK149785|Psap|19156|prosaposin	NM_001146124|Psap|19156|prosaposin
mm9_v1_chr6_-_40985505_40985509	0.0772855	bHLH_family.p2	AK007773|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008695|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008460|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	NM_023333|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	BC061093|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr10_-_12581443_12581532	0.077269	bHLH_family.p2	Y12229|Utrn|22288|utrophin	NM_011682|Utrn|22288|utrophin
mm9_v1_chr9_-_60358813_60358841	0.0768951	bHLH_family.p2	AK085819|Thsd4|207596|thrombospondin, type I, domain containing 4	AK138976|Thsd4|207596|thrombospondin, type I, domain containing 4	NM_001040426|Thsd4|207596|thrombospondin, type I, domain containing 4
mm9_v1_chr7_+_112706171_112706777	0.076334	bHLH_family.p2	AK205297|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK206661|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK214733|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK212303|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK182658|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK205584|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK190375|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK195882|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK180590|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal	AK205699|Smpd1|20597|sphingomyelin phosphodiesterase 1, acid lysosomal
mm9_v1_chr9_-_66440640_66440842	0.0761563	bHLH_family.p2	AK031141|Usp3|235441|ubiquitin specific peptidase 3	NM_144937|Usp3|235441|ubiquitin specific peptidase 3	AK158516|Usp3|235441|ubiquitin specific peptidase 3	AK161676|Usp3|235441|ubiquitin specific peptidase 3
mm9_v1_chr17_-_47970167_47970209	0.0760889	bHLH_family.p2	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr1_-_34496516_34496516	0.0754765	bHLH_family.p2	BC019430|Ccdc115|69668|coiled-coil domain containing 115	NM_027159|Ccdc115|69668|coiled-coil domain containing 115
mm9_v1_chr8_+_126177709_126177845	0.0753195	bHLH_family.p2	AB051827|Rhou|69581|ras homolog gene family, member U	BC134407|Rhou|69581|ras homolog gene family, member U	NM_133955|Rhou|69581|ras homolog gene family, member U	AF378088|Rhou|69581|ras homolog gene family, member U
mm9_v1_chr16_-_65562921_65563010	0.0751178	bHLH_family.p2	AK084111|Chmp2b|68942|chromatin modifying protein 2B	NM_026879|Chmp2b|68942|chromatin modifying protein 2B	BC055809|Chmp2b|68942|chromatin modifying protein 2B
mm9_v1_chr8_-_114378162_114378252	0.0743498	bHLH_family.p2	AK160532|Cfdp1|23837|craniofacial development protein 1	BC005589|Cfdp1|23837|craniofacial development protein 1	AB010828|Cfdp1|23837|craniofacial development protein 1	NM_011801|Cfdp1|23837|craniofacial development protein 1	Y08219|Cfdp1|23837|craniofacial development protein 1	AK133989|Cfdp1|23837|craniofacial development protein 1
mm9_v1_chr6_-_30846696_30846797	0.0740404	bHLH_family.p2	AF205065|Copg2|54160|coatomer protein complex, subunit gamma 2	AK079599|Copg2|54160|coatomer protein complex, subunit gamma 2	AK178636|Copg2|54160|coatomer protein complex, subunit gamma 2	AK186993|Copg2|54160|coatomer protein complex, subunit gamma 2	AK149462|Copg2|54160|coatomer protein complex, subunit gamma 2	BC145898|Copg2|54160|coatomer protein complex, subunit gamma 2	BC145900|Copg2|54160|coatomer protein complex, subunit gamma 2	AK147943|Copg2|54160|coatomer protein complex, subunit gamma 2	BC049178|Copg2|54160|coatomer protein complex, subunit gamma 2	NM_017478|Copg2|54160|coatomer protein complex, subunit gamma 2	AK163668|Copg2|54160|coatomer protein complex, subunit gamma 2	AJ251067|Copg2|54160|coatomer protein complex, subunit gamma 2	AK088492|Copg2|54160|coatomer protein complex, subunit gamma 2
mm9_v1_chr8_+_12573048_12573048	0.0739318	bHLH_family.p2	AK018926|1700094C09Rik|78634|RIKEN cDNA 1700094C09 gene	BC048522|1700094C09Rik|78634|RIKEN cDNA 1700094C09 gene	NM_024279|1700094C09Rik|78634|RIKEN cDNA 1700094C09 gene
mm9_v1_chr7_-_3867085_3867115	0.0737417	bHLH_family.p2	BC119598|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	NM_011087|Pira1|18722|paired-Ig-like receptor A1	U96682|Pira1|18722|paired-Ig-like receptor A1	BC127613|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	BC128500|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	U96684|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK152898|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	NM_011090|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK030846|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	AK054162|Lilra6|18726|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
mm9_v1_chr6_-_28399248_28399339	0.0737288	bHLH_family.p2	BC131908|Pax4|18506|paired box gene 4	BC131906|Pax4|18506|paired box gene 4	BC145168|Pax4|18506|paired box gene 4	BC145169|Pax4|18506|paired box gene 4	AB010557|Pax4|18506|paired box gene 4	AF145233|Pax4|18506|paired box gene 4	AB010558|Pax4|18506|paired box gene 4	AB008912|Pax4|18506|paired box gene 4	NM_001159925|Pax4|18506|paired box gene 4	NM_001159926|Pax4|18506|paired box gene 4	NM_011038|Pax4|18506|paired box gene 4
mm9_v1_chr4_+_118199847_118199895	0.0734471	bHLH_family.p2	AK012175|2610528J11Rik|66451|RIKEN cDNA 2610528J11 gene	NM_025572|2610528J11Rik|66451|RIKEN cDNA 2610528J11 gene	AK147115|2610528J11Rik|66451|RIKEN cDNA 2610528J11 gene	AK009128|2610528J11Rik|66451|RIKEN cDNA 2610528J11 gene
mm9_v1_chr4_+_102791890_102792040	0.0734277	bHLH_family.p2	AK143201|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK138876|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	NM_001039081|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK168693|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	BC108273|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AY769437|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis
mm9_v1_chr11_+_105829364_105829480	0.0731877	bHLH_family.p2	BC083109|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm9_v1_chr11_-_70273434_70273443	0.0722256	bHLH_family.p2	AK152547|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr4_+_125806078_125806220	0.0720008	bHLH_family.p2	AK050808|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr6_-_58385838_58385887	0.0714347	bHLH_family.p2	NM_134177|Vmn1r30|171195|vomeronasal 1 receptor 30	BC138075|Vmn1r30|171195|vomeronasal 1 receptor 30	BC138078|Vmn1r30|171195|vomeronasal 1 receptor 30
mm9_v1_chr6_-_89795530_89795608	0.0710993	bHLH_family.p2	NM_053221|Vmn1r42|113848|vomeronasal 1 receptor 42	BC125372|Vmn1r42|113848|vomeronasal 1 receptor 42
mm9_v1_chr7_-_29123775_29123801	0.0710003	bHLH_family.p2	AK146650|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr13_+_40955500_40955723	0.0702731	bHLH_family.p2	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr2_-_113839354_113839354	0.0700111	bHLH_family.p2	BC058595|Gjd2|14617|gap junction protein, delta 2	NM_010290|Gjd2|14617|gap junction protein, delta 2
mm9_v1_chr7_+_139802303_139802366	0.0687154	bHLH_family.p2	NM_029609|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	AK009207|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	BC065789|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase
mm9_v1_chr1_-_167523348_167523717	0.0683213	bHLH_family.p2	AK188720|Mpzl1|68481|myelin protein zero-like 1	AK198363|Mpzl1|68481|myelin protein zero-like 1	AK200888|Mpzl1|68481|myelin protein zero-like 1	AK206772|Mpzl1|68481|myelin protein zero-like 1	AK210071|Mpzl1|68481|myelin protein zero-like 1	AK214871|Mpzl1|68481|myelin protein zero-like 1	AK215062|Mpzl1|68481|myelin protein zero-like 1	AK218959|Mpzl1|68481|myelin protein zero-like 1	AK003513|Mpzl1|68481|myelin protein zero-like 1
mm9_v1_chr11_-_4999069_4999098	0.0676218	bHLH_family.p2	AK049743|Ewsr1|14030|Ewing sarcoma breakpoint region 1	NM_007968|Ewsr1|14030|Ewing sarcoma breakpoint region 1	X79233|Ewsr1|14030|Ewing sarcoma breakpoint region 1	AK046434|Ewsr1|14030|Ewing sarcoma breakpoint region 1
mm9_v1_chr2_+_118727248_118727453	0.0676132	bHLH_family.p2	NM_001045523|Bahd1|228536|bromo adjacent homology domain containing 1	AK152597|Bahd1|228536|bromo adjacent homology domain containing 1
mm9_v1_chr5_+_119010687_119010751	0.06732	bHLH_family.p2	AK088795|Med13l|76199|mediator complex subunit 13-like	NM_172424|Med13l|76199|mediator complex subunit 13-like	AK154895|Med13l|76199|mediator complex subunit 13-like	AY338464|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr6_+_3448385_3448452	0.0670519	bHLH_family.p2	NM_001167750|Ccdc132|73288|coiled-coil domain containing 132	NM_001167751|Ccdc132|73288|coiled-coil domain containing 132	NM_024260|Ccdc132|73288|coiled-coil domain containing 132	AY254697|Ccdc132|73288|coiled-coil domain containing 132	AK075898|Ccdc132|73288|coiled-coil domain containing 132	AK042031|Ccdc132|73288|coiled-coil domain containing 132	AK018415|Ccdc132|73288|coiled-coil domain containing 132	BC043092|Ccdc132|73288|coiled-coil domain containing 132	AK129458|Ccdc132|73288|coiled-coil domain containing 132	BC036294|Ccdc132|73288|coiled-coil domain containing 132
mm9_v1_chr4_-_127035364_127035407	0.0669426	bHLH_family.p2	M91236|Gjb5|14622|gap junction protein, beta 5	AK082917|Gjb5|14622|gap junction protein, beta 5	NM_010291|Gjb5|14622|gap junction protein, beta 5
mm9_v1_chr6_+_40914752_40914770	0.0669124	bHLH_family.p2	BC132243|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	BC132245|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	AK007406|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	NM_023707|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene
mm9_v1_chr7_-_97605681_97605720	0.0668907	bHLH_family.p2	BC023171|Tmem126a|66271|transmembrane protein 126A	AK005343|Tmem126a|66271|transmembrane protein 126A	AK050267|Tmem126a|66271|transmembrane protein 126A	AK007559|Tmem126a|66271|transmembrane protein 126A	NM_025460|Tmem126a|66271|transmembrane protein 126A
mm9_v1_chr6_-_87759747_87759783	0.0667099	bHLH_family.p2	NM_133717|Rab43|69834|RAB43, member RAS oncogene family	BC010248|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr7_+_129210684_129210770	0.0663662	bHLH_family.p2	AK077395|Ubfd1|28018|ubiquitin family domain containing 1	NM_138589|Ubfd1|28018|ubiquitin family domain containing 1	BC011313|Ubfd1|28018|ubiquitin family domain containing 1	AK033428|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr2_-_158187209_158187269	0.0660908	bHLH_family.p2	AK046044|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK040893|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK007971|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene	AK079109|9430008C03Rik|68108|RIKEN cDNA 9430008C03 gene
mm9_v1_chr7_+_51723361_51723439	0.0657572	bHLH_family.p2	AK003525|Josd2|66124|Josephin domain containing 2	NM_025368|Josd2|66124|Josephin domain containing 2
mm9_v1_chr16_+_36885096_36885119	0.0653909	bHLH_family.p2	NM_030035|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	BC145221|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	BC150731|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm9_v1_chr12_-_105251851_105251861	0.0650961	bHLH_family.p2	BC132287|Serpina9|71907|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	BC144769|Serpina9|71907|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	AK009343|Serpina9|71907|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	NM_027997|Serpina9|71907|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
mm9_v1_chr1_+_75396650_75396733	0.0650312	bHLH_family.p2	NM_001173477|Speg|11790|SPEG complex locus
mm9_v1_chrX_+_162608411_162608448	0.0649208	bHLH_family.p2	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr4_-_96220030_96220248	0.0648555	bHLH_family.p2	AK180579|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK186838|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK193212|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK210777|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK078893|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK165663|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK038636|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6
mm9_v1_chr11_-_114657186_114657223	0.0646978	bHLH_family.p2	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chr4_-_119211373_119211373	0.0645611	bHLH_family.p2	BC076608|AA415398|433752|expressed sequence AA415398	NM_001004178|AA415398|433752|expressed sequence AA415398
mm9_v1_chr9_+_21760196_21760229	0.0643792	bHLH_family.p2	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr2_+_103264218_103264240	0.0642808	bHLH_family.p2	AK145214|Elf5|13711|E74-like factor 5	NM_010125|Elf5|13711|E74-like factor 5	AF049702|Elf5|13711|E74-like factor 5
mm9_v1_chr9_-_110649625_110649648	0.0640859	bHLH_family.p2	BC013446|Pth1r|19228|parathyroid hormone 1 receptor	NM_011199|Pth1r|19228|parathyroid hormone 1 receptor
mm9_v1_chr18_-_61946264_61946277	0.064076	bHLH_family.p2	BC094505|Afap1l1|106877|actin filament associated protein 1-like 1	BC138923|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr14_+_99499149_99499178	0.0640481	bHLH_family.p2	AK045133|Pibf1|52023|progesterone immunomodulatory binding factor 1	AK030385|Pibf1|52023|progesterone immunomodulatory binding factor 1	BC113804|Pibf1|52023|progesterone immunomodulatory binding factor 1	BC129811|Pibf1|52023|progesterone immunomodulatory binding factor 1	BC129812|Pibf1|52023|progesterone immunomodulatory binding factor 1	AK050974|Pibf1|52023|progesterone immunomodulatory binding factor 1	AK015781|Pibf1|52023|progesterone immunomodulatory binding factor 1
mm9_v1_chr12_+_112776424_112776453	0.0639835	bHLH_family.p2	AK076403|Eif5|217869|eukaryotic translation initiation factor 5	AK159232|Eif5|217869|eukaryotic translation initiation factor 5	AK160879|Eif5|217869|eukaryotic translation initiation factor 5	AK172048|Eif5|217869|eukaryotic translation initiation factor 5	AK163368|Eif5|217869|eukaryotic translation initiation factor 5	BC029003|Eif5|217869|eukaryotic translation initiation factor 5	BC056633|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr3_+_94282752_94282752	0.0639044	bHLH_family.p2	AY165052|Celf3|78784|VCUGBP, Elav-like family member 3	NM_172434|Celf3|78784|VCUGBP, Elav-like family member 3
mm9_v1_chr2_+_80171439_80171527	0.0638249	bHLH_family.p2	AK190686|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK204346|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK206826|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	BC002207|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr15_-_79558379_79558491	0.0634614	bHLH_family.p2	AK047688|Sun2|223697|Sad1 and UNC84 domain containing 2
mm9_v1_chr2_-_120365581_120365597	0.0633347	bHLH_family.p2	U59739|Zfp106|20402|zinc finger protein 106
mm9_v1_chrX_-_35022192_35022192	0.0630883	bHLH_family.p2	AJ972670|Rhox4f|636177|reproductive homeobox 4F	NM_001039696|Rhox4f|636177|reproductive homeobox 4F
mm9_v1_chr14_+_52504516_52504626	0.0629365	bHLH_family.p2	NM_001029990|Mett11d1|52535|methyltransferase 11 domain containing 1	AK156895|Mett11d1|52535|methyltransferase 11 domain containing 1	AK172330|Mett11d1|52535|methyltransferase 11 domain containing 1	BC138944|Mett11d1|52535|methyltransferase 11 domain containing 1	BC145472|Mett11d1|52535|methyltransferase 11 domain containing 1	BC145473|Mett11d1|52535|methyltransferase 11 domain containing 1	BC145474|Mett11d1|52535|methyltransferase 11 domain containing 1	AK087101|Mett11d1|52535|methyltransferase 11 domain containing 1	AK155096|Mett11d1|52535|methyltransferase 11 domain containing 1	AK009576|Mett11d1|52535|methyltransferase 11 domain containing 1	AK032357|Mett11d1|52535|methyltransferase 11 domain containing 1
mm9_v1_chr7_-_86275845_86275903	0.0627777	bHLH_family.p2	AY269788|Hapln3|67666|hyaluronan and proteoglycan link protein 3	BC110474|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK017865|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK136956|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK016123|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AY262757|Hapln3|67666|hyaluronan and proteoglycan link protein 3	NM_178255|Hapln3|67666|hyaluronan and proteoglycan link protein 3
mm9_v1_chr3_+_107081927_107081986	0.0627696	bHLH_family.p2	AK003358|Hbxip|68576|hepatitis B virus x interacting protein	BC028547|Hbxip|68576|hepatitis B virus x interacting protein
mm9_v1_chr9_-_21043659_21043781	0.0618023	bHLH_family.p2	AK150437|Keap1|50868|kelch-like ECH-associated protein 1	AK152142|Keap1|50868|kelch-like ECH-associated protein 1	AK004738|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110305|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110306|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110307|Keap1|50868|kelch-like ECH-associated protein 1	NM_016679|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr14_+_75576599_75576717	0.0617676	bHLH_family.p2	AK088202|Lcp1|18826|lymphocyte cytosolic protein 1	U82610|Lcp1|18826|lymphocyte cytosolic protein 1	AK169728|Lcp1|18826|lymphocyte cytosolic protein 1	AK171751|Lcp1|18826|lymphocyte cytosolic protein 1	AK030996|Lcp1|18826|lymphocyte cytosolic protein 1	AK169972|Lcp1|18826|lymphocyte cytosolic protein 1	AK167261|Lcp1|18826|lymphocyte cytosolic protein 1	AK153061|Lcp1|18826|lymphocyte cytosolic protein 1	AK153082|Lcp1|18826|lymphocyte cytosolic protein 1	AK151542|Lcp1|18826|lymphocyte cytosolic protein 1	AK089922|Lcp1|18826|lymphocyte cytosolic protein 1	AK151720|Lcp1|18826|lymphocyte cytosolic protein 1	AK152668|Lcp1|18826|lymphocyte cytosolic protein 1	AK152891|Lcp1|18826|lymphocyte cytosolic protein 1	AK152902|Lcp1|18826|lymphocyte cytosolic protein 1	AK168062|Lcp1|18826|lymphocyte cytosolic protein 1	AK153206|Lcp1|18826|lymphocyte cytosolic protein 1	AK169833|Lcp1|18826|lymphocyte cytosolic protein 1	AK030806|Lcp1|18826|lymphocyte cytosolic protein 1	AK151155|Lcp1|18826|lymphocyte cytosolic protein 1
mm9_v1_chr7_-_118214192_118214323	0.0615341	bHLH_family.p2	AK037763|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr2_-_34681496_34681692	0.0615259	bHLH_family.p2	X54352|Fbxw2|30050|F-box and WD-40 domain protein 2	AK009893|Fbxw2|30050|F-box and WD-40 domain protein 2
mm9_v1_chr11_-_69619087_69619125	0.061271	bHLH_family.p2	BC144871|Tmem102|380705|transmembrane protein 102	AK143262|Tmem102|380705|transmembrane protein 102	NM_001033433|Tmem102|380705|transmembrane protein 102
mm9_v1_chr6_+_57159851_57159851	0.0609387	bHLH_family.p2	NM_053235|Vmn1r13|113862|vomeronasal 1 receptor 13
mm9_v1_chr17_-_95149210_95149231	0.0609308	bHLH_family.p2	AK043389|Mettl4|76781|methyltransferase like 4	AK157268|Mettl4|76781|methyltransferase like 4	NM_176917|Mettl4|76781|methyltransferase like 4
mm9_v1_chr12_+_72116953_72117066	0.0605915	bHLH_family.p2	NM_001081195|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC025436|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK050594|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK087354|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC080780|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC058209|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AY116674|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)
mm9_v1_chr9_+_100978450_100978485	0.0604737	bHLH_family.p2	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr8_-_59029657_59029687	0.0604303	bHLH_family.p2	
mm9_v1_chr7_+_4877386_4877447	0.0603003	bHLH_family.p2	AK165666|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	AK079906|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	EU850434|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	NM_173008|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	BC141044|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene
mm9_v1_chr4_+_110070336_110070438	0.0602982	bHLH_family.p2	AK016502|Agbl4|78933|ATP/GTP binding protein-like 4	AK019817|Agbl4|78933|ATP/GTP binding protein-like 4	AK051109|Agbl4|78933|ATP/GTP binding protein-like 4	DQ867039|Agbl4|78933|ATP/GTP binding protein-like 4	DQ867040|Agbl4|78933|ATP/GTP binding protein-like 4	NM_001048189|Agbl4|78933|ATP/GTP binding protein-like 4	NM_030231|Agbl4|78933|ATP/GTP binding protein-like 4
mm9_v1_chr5_+_35384213_35384292	0.0600546	bHLH_family.p2	AK165433|Hgfac|54426|hepatocyte growth factor activator	AK144554|Hgfac|54426|hepatocyte growth factor activator	BC019376|Hgfac|54426|hepatocyte growth factor activator	AK149522|Hgfac|54426|hepatocyte growth factor activator	AF099017|Hgfac|54426|hepatocyte growth factor activator	AF224724|Hgfac|54426|hepatocyte growth factor activator	AK075718|Hgfac|54426|hepatocyte growth factor activator
mm9_v1_chr12_-_115286643_115286977	0.0594575	bHLH_family.p2	M35502|Igh-V11|16051|immunoglobulin heavy chain (V11 family)	M37557|Igh-V11|16051|immunoglobulin heavy chain (V11 family)	M37558|Igh-V11|16051|immunoglobulin heavy chain (V11 family)	M37559|Igh-V11|16051|immunoglobulin heavy chain (V11 family)	M37560|Igh-V11|16051|immunoglobulin heavy chain (V11 family)	Y00743|Igh-V11|16051|immunoglobulin heavy chain (V11 family)
mm9_v1_chr2_+_75542804_75542924	0.0592878	bHLH_family.p2	AK053216|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene	AK078602|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene
mm9_v1_chr5_+_136455974_136455989	0.0590608	bHLH_family.p2	BC100745|Zp3|22788|zona pellucida glycoprotein 3	BC103583|Zp3|22788|zona pellucida glycoprotein 3	BC103584|Zp3|22788|zona pellucida glycoprotein 3	BC103585|Zp3|22788|zona pellucida glycoprotein 3	M20026|Zp3|22788|zona pellucida glycoprotein 3	NM_011776|Zp3|22788|zona pellucida glycoprotein 3	AK131934|Zp3|22788|zona pellucida glycoprotein 3	BC099465|Zp3|22788|zona pellucida glycoprotein 3
mm9_v1_chr8_+_125710134_125710141	0.0590108	bHLH_family.p2	NM_007876|Dpep1|13479|dipeptidase 1 (renal)	D13139|Dpep1|13479|dipeptidase 1 (renal)
mm9_v1_chr10_-_53350244_53350244	0.0590094	bHLH_family.p2	NM_027830|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr6_-_127076410_127076426	0.0589996	bHLH_family.p2	AK011225|Ccnd2|12444|cyclin D2
mm9_v1_chr11_+_48639639_48639641	0.0583228	bHLH_family.p2	NM_053166|Trim7|94089|tripartite motif-containing 7	AF396656|Trim7|94089|tripartite motif-containing 7
mm9_v1_chr5_-_87911282_87911282	0.0582878	bHLH_family.p2	BC048920|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	BC058786|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2	NM_001024148|Ugt2a2|552899|UDP glucuronosyltransferase 2 family, polypeptide A2
mm9_v1_chr2_-_152655725_152655826	0.0580029	bHLH_family.p2	U10100|Bcl2l1|12048|BCL2-like 1	U10101|Bcl2l1|12048|BCL2-like 1	X83574|Bcl2l1|12048|BCL2-like 1	BC089017|Bcl2l1|12048|BCL2-like 1	U51278|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr2_+_163851185_163851216	0.0579937	bHLH_family.p2	NM_001114079|Pabpc1l|381404|poly(A) binding protein, cytoplasmic 1-like	EU669908|Pabpc1l|381404|poly(A) binding protein, cytoplasmic 1-like
mm9_v1_chr10_+_81091284_81091284	0.0576149	bHLH_family.p2	NM_027480|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr10_+_99798309_99798309	0.057208	bHLH_family.p2	BC147487|Gm4312|100043247|predicted gene 4312	NM_001166636|Gm4312|100043247|predicted gene 4312	NM_001166637|Gm4301|100043224|predicted gene 4301
mm9_v1_chr2_+_153700780_153700825	0.0569772	bHLH_family.p2	AK010157|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	NM_025631|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK009504|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK028158|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK009346|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK009619|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK009871|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK009794|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK010120|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK010154|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK010215|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK028156|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK075874|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK160516|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK009776|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	AK010130|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	BC116681|Bpil1|66557|bactericidal/permeability-increasing protein-like 1	BC116727|Bpil1|66557|bactericidal/permeability-increasing protein-like 1
mm9_v1_chr16_-_35939001_35939021	0.0564923	bHLH_family.p2	AK090152|Dtx3l|209200|deltex 3-like (Drosophila)	BC085093|Dtx3l|209200|deltex 3-like (Drosophila)	AK146802|Dtx3l|209200|deltex 3-like (Drosophila)
mm9_v1_chr14_+_64723122_64723175	0.056182	bHLH_family.p2	AB009660|Prss52|73382|protease, serine, 52	BC049714|Prss52|73382|protease, serine, 52	NM_028525|Prss52|73382|protease, serine, 52	AK006746|Prss52|73382|protease, serine, 52
mm9_v1_chr8_-_97958738_97958768	0.055985	bHLH_family.p2	AK172603|Gtl3|14894|gene trap locus 3	NM_008187|Gtl3|14894|gene trap locus 3
mm9_v1_chr13_-_68720969_68721013	0.0559084	bHLH_family.p2	AK155359|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	AK163449|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	AK162978|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	BC031565|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	AK028628|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	NM_172480|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase
mm9_v1_chr10_-_77289814_77289839	0.0558737	bHLH_family.p2	BC115499|Krtap10-4|100191037|keratin associated protein 10-4	BC115500|Krtap10-4|100191037|keratin associated protein 10-4	NM_001135991|Krtap10-4|100191037|keratin associated protein 10-4	AK020700|Krtap10-4|100191037|keratin associated protein 10-4
mm9_v1_chr11_+_45665441_45665545	0.0558428	bHLH_family.p2	AK143544|Clint1|216705|clathrin interactor 1	NM_001045520|Clint1|216705|clathrin interactor 1	AK147875|Clint1|216705|clathrin interactor 1	AK168991|Clint1|216705|clathrin interactor 1	AK167454|Clint1|216705|clathrin interactor 1
mm9_v1_chr3_+_26536552_26536628	0.0556907	bHLH_family.p2	AK076628|Spata16|70862|spermatogenesis associated 16	NM_027583|Spata16|70862|spermatogenesis associated 16	NM_029150|Spata16|70862|spermatogenesis associated 16	BC100443|Spata16|70862|spermatogenesis associated 16	AK015690|Spata16|70862|spermatogenesis associated 16	AK014869|Spata16|70862|spermatogenesis associated 16	BC132205|Spata16|70862|spermatogenesis associated 16	BC132539|Spata16|70862|spermatogenesis associated 16
mm9_v1_chr10_-_44178474_44178587	0.0548858	bHLH_family.p2	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr11_-_109856977_109857129	0.0546916	bHLH_family.p2	BC089557|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	AK173034|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	BC141401|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	AF498362|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	AK138196|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	NM_013851|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b
mm9_v1_chr3_-_40706422_40706464	0.0546875	bHLH_family.p2	AK077003|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene	BC117739|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene	AK006596|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene	NM_028494|1700034I23Rik|73297|RIKEN cDNA 1700034I23 gene
mm9_v1_chr17_+_49567718_49567797	0.0545347	bHLH_family.p2	AK157231|Mocs1|56738|molybdenum cofactor synthesis 1
mm9_v1_chr3_+_145421621_145421769	0.0539967	bHLH_family.p2	AK143507|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK148907|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	NM_026993|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK010430|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	BC034505|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr9_+_110700669_110700825	0.0536126	bHLH_family.p2	BC060984|Prss42|235628|protease, serine, 42	AB052292|Prss42|235628|protease, serine, 42	NM_153099|Prss42|235628|protease, serine, 42	AK133402|Prss42|235628|protease, serine, 42
mm9_v1_chr14_+_75642093_75642165	0.0535971	bHLH_family.p2	AF164524|Cpb2|56373|carboxypeptidase B2 (plasma)	NM_019775|Cpb2|56373|carboxypeptidase B2 (plasma)	AK004045|Cpb2|56373|carboxypeptidase B2 (plasma)	BC089577|Cpb2|56373|carboxypeptidase B2 (plasma)	AB021968|Cpb2|56373|carboxypeptidase B2 (plasma)	AF186188|Cpb2|56373|carboxypeptidase B2 (plasma)
mm9_v1_chr6_+_122503826_122503835	0.0532473	bHLH_family.p2	NM_009645|Aicda|11628|activation-induced cytidine deaminase	AF132979|Aicda|11628|activation-induced cytidine deaminase
mm9_v1_chr11_+_72503487_72503520	0.0532431	bHLH_family.p2	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr7_+_134732211_134732297	0.053223	bHLH_family.p2	NM_172281|Rnf40|233900|ring finger protein 40	AK089805|Rnf40|233900|ring finger protein 40	AK154982|Rnf40|233900|ring finger protein 40	AK171462|Rnf40|233900|ring finger protein 40	AK129184|Rnf40|233900|ring finger protein 40	BC038348|Rnf40|233900|ring finger protein 40
mm9_v1_chr2_+_21127350_21127413	0.0532206	bHLH_family.p2	AK029518|Thnsl1|208967|threonine synthase-like 1 (bacterial)	NM_001001297|Thnsl1|208967|threonine synthase-like 1 (bacterial)	NM_177588|Thnsl1|208967|threonine synthase-like 1 (bacterial)	AK083895|Thnsl1|208967|threonine synthase-like 1 (bacterial)	AK033465|Thnsl1|208967|threonine synthase-like 1 (bacterial)	AK087148|Thnsl1|208967|threonine synthase-like 1 (bacterial)
mm9_v1_chr5_-_135726771_135726916	0.0531135	bHLH_family.p2	AF033585|Fzd9|14371|frizzled homolog 9 (Drosophila)	NM_010246|Fzd9|14371|frizzled homolog 9 (Drosophila)
mm9_v1_chr4_-_131481251_131481396	0.0526727	bHLH_family.p2	AK010038|Epb4.1|269587|erythrocyte protein band 4.1	AK213490|Epb4.1|269587|erythrocyte protein band 4.1	AK214122|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr10_-_118306180_118306246	0.0524876	bHLH_family.p2	AK149371|Dyrk2|69181|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	AK155496|Dyrk2|69181|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm9_v1_chr12_+_112776539_112776573	0.0523712	bHLH_family.p2	BC019769|Eif5|217869|eukaryotic translation initiation factor 5	BC012220|Eif5|217869|eukaryotic translation initiation factor 5	BC023074|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr14_-_51512929_51512929	0.0516329	bHLH_family.p2	NM_001166651|Klhl33|546611|kelch-like 33 (Drosophila)
mm9_v1_chr11_-_99949426_99949428	0.0515929	bHLH_family.p2	BC118064|Krt32|16670|keratin 32	BC117553|Krt32|16670|keratin 32	NM_001159374|Krt32|16670|keratin 32	X75649|Krt32|16670|keratin 32
mm9_v1_chr17_+_35516558_35516583	0.051095	bHLH_family.p2	AK037574|H2-Gs10|436493|MHC class I like protein GS10	AK136497|H2-Gs10|436493|MHC class I like protein GS10	NM_001143689|H2-Gs10|436493|MHC class I like protein GS10	BC010602|H2-Gs10|436493|MHC class I like protein GS10
mm9_v1_chr1_+_182781247_182781321	0.0510567	bHLH_family.p2	AK160893|BC031781|208768|cDNA sequence BC031781	AK078485|BC031781|208768|cDNA sequence BC031781	BC031781|BC031781|208768|cDNA sequence BC031781	NM_145943|BC031781|208768|cDNA sequence BC031781	AK138767|BC031781|208768|cDNA sequence BC031781
mm9_v1_chr13_+_113657736_113657889	0.0507537	bHLH_family.p2	
mm9_v1_chr9_-_43951401_43951528	0.0504677	bHLH_family.p2	
mm9_v1_chrX_+_50626600_50626621	0.0504542	bHLH_family.p2	AK015916|Fam122c|73866|family with sequence similarity 122, member C	AK015288|Fam122c|73866|family with sequence similarity 122, member C	NM_028671|Fam122c|73866|family with sequence similarity 122, member C	BC147640|Fam122c|73866|family with sequence similarity 122, member C	BC147646|Fam122c|73866|family with sequence similarity 122, member C	BC172114|Fam122c|73866|family with sequence similarity 122, member C
mm9_v1_chr7_-_11242322_11242322	0.0503743	bHLH_family.p2	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr7_-_150970404_150970404	0.050325	bHLH_family.p2	AK133657|Mrgpre|244238|MAS-related GPR, member E	NM_175534|Mrgpre|244238|MAS-related GPR, member E
mm9_v1_chr4_+_114761312_114761366	0.0501723	bHLH_family.p2	NM_001164557|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_001164558|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_026018|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK007936|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK008253|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK012305|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr13_-_58316960_58317026	0.0501491	bHLH_family.p2	BC080667|Ubqln1|56085|ubiquilin 1	AK165456|Ubqln1|56085|ubiquilin 1	AK172695|Ubqln1|56085|ubiquilin 1	BC026847|Ubqln1|56085|ubiquilin 1	NM_026842|Ubqln1|56085|ubiquilin 1	NM_152234|Ubqln1|56085|ubiquilin 1
mm9_v1_chr3_+_121129396_121129492	0.0501236	bHLH_family.p2	AK169098|Cnn3|71994|calponin 3, acidic	AK159555|Cnn3|71994|calponin 3, acidic	AK169021|Cnn3|71994|calponin 3, acidic	AK167201|Cnn3|71994|calponin 3, acidic	AK051628|Cnn3|71994|calponin 3, acidic	AK159871|Cnn3|71994|calponin 3, acidic	AK167613|Cnn3|71994|calponin 3, acidic	AK166578|Cnn3|71994|calponin 3, acidic	BC055711|Cnn3|71994|calponin 3, acidic	AK005460|Cnn3|71994|calponin 3, acidic	NM_028044|Cnn3|71994|calponin 3, acidic	AK051121|Cnn3|71994|calponin 3, acidic	AK169410|Cnn3|71994|calponin 3, acidic
mm9_v1_chr14_-_40286236_40286375	0.0500466	bHLH_family.p2	AF010130|Nrg3|18183|neuregulin 3	NM_001190187|Nrg3|18183|neuregulin 3	NM_001190188|Nrg3|18183|neuregulin 3	NM_008734|Nrg3|18183|neuregulin 3
mm9_v1_chr1_-_121545442_121545576	0.0500075	bHLH_family.p2	AK034676|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK047523|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK173198|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	BC011476|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044959|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044996|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK079301|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK161141|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK027983|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK037024|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK136125|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK040354|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK167449|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_001113416|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_145506|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5
mm9_v1_chr8_-_84926440_84926468	0.0498866	bHLH_family.p2	NM_008357|Il15|16168|interleukin 15	U14332|Il15|16168|interleukin 15	BC023698|Il15|16168|interleukin 15
mm9_v1_chr11_+_68781623_68781690	0.0496747	bHLH_family.p2	AK171131|Slc25a35|71998|solute carrier family 25, member 35	AK007453|Slc25a35|71998|solute carrier family 25, member 35	NM_028048|Slc25a35|71998|solute carrier family 25, member 35	AK157873|Slc25a35|71998|solute carrier family 25, member 35	AK035739|Slc25a35|71998|solute carrier family 25, member 35	BC019996|Slc25a35|71998|solute carrier family 25, member 35
mm9_v1_chr15_+_25914202_25914226	0.0496249	bHLH_family.p2	BC006964|Zfp622|52521|zinc finger protein 622
mm9_v1_chr11_-_70273453_70273485	0.0493046	bHLH_family.p2	AK028875|Cxcl16|66102|chemokine (C-X-C motif) ligand 16	NM_023158|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr10_-_41023009_41023070	0.0487953	bHLH_family.p2	AK169881|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172341|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172130|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK155392|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC031887|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK041196|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC015295|Fig4|103199|FIG4 homolog (S. cerevisiae)	NM_133999|Fig4|103199|FIG4 homolog (S. cerevisiae)
mm9_v1_chr9_-_106378901_106379002	0.0484897	bHLH_family.p2	BC062204|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK044223|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK088125|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AF368233|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	NM_145619|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK145259|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr2_-_148269170_148269322	0.0484398	bHLH_family.p2	AK155060|Cd93|17064|CD93 antigen	AK079060|Cd93|17064|CD93 antigen	NM_010740|Cd93|17064|CD93 antigen	AF081789|Cd93|17064|CD93 antigen	AK028485|Cd93|17064|CD93 antigen
mm9_v1_chr7_+_25292105_25292148	0.0478944	bHLH_family.p2	NM_146183|Zfp428|232969|zinc finger protein 428	AK080517|Zfp428|232969|zinc finger protein 428
mm9_v1_chr11_-_70273333_70273368	0.0478181	bHLH_family.p2	AK170428|Cxcl16|66102|chemokine (C-X-C motif) ligand 16	BC019961|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr4_-_150418580_150418616	0.0474849	bHLH_family.p2	AB013605|Per3|18628|period homolog 3 (Drosophila)	AJ007377|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr3_-_94910641_94910756	0.0473867	bHLH_family.p2	D86177|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK167816|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr17_-_27075896_27076239	0.0471854	bHLH_family.p2	AK181681|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK187338|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC037500|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC021463|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr1_-_141273617_141273676	0.0467316	bHLH_family.p2	AF406641|Crb1|170788|crumbs homolog 1 (Drosophila)	AY450552|Crb1|170788|crumbs homolog 1 (Drosophila)	NM_133239|Crb1|170788|crumbs homolog 1 (Drosophila)	AF492496|Crb1|170788|crumbs homolog 1 (Drosophila)
mm9_v1_chr8_+_125930981_125931146	0.0462461	bHLH_family.p2	NM_008559|Mc1r|17199|melanocortin 1 receptor	AK148437|Mc1r|17199|melanocortin 1 receptor
mm9_v1_chr11_-_70273251_70273271	0.0462335	bHLH_family.p2	AK151330|Cxcl16|66102|chemokine (C-X-C motif) ligand 16	AK152102|Cxcl16|66102|chemokine (C-X-C motif) ligand 16
mm9_v1_chr11_+_117643610_117643698	0.0460311	bHLH_family.p2	NM_001195089|Tmc8|217356|transmembrane channel-like gene family 8	NM_001195090|Tmc8|217356|transmembrane channel-like gene family 8	NM_181856|Tmc8|217356|transmembrane channel-like gene family 8	AK171772|Tmc8|217356|transmembrane channel-like gene family 8	AK156764|Tmc8|217356|transmembrane channel-like gene family 8	AY236501|Tmc8|217356|transmembrane channel-like gene family 8
mm9_v1_chr5_-_120935430_120935472	0.0460037	bHLH_family.p2	AK179951|Plbd2|71772|phospholipase B domain containing 2	AK214336|Plbd2|71772|phospholipase B domain containing 2	AK215411|Plbd2|71772|phospholipase B domain containing 2	AK216450|Plbd2|71772|phospholipase B domain containing 2	AK218751|Plbd2|71772|phospholipase B domain containing 2	AK219038|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr7_-_20724436_20724436	0.0459164	bHLH_family.p2	NM_001167573|Gm10666|100043037|predicted gene 10666	NM_207547|Vmn1r93|404290|vomernasal 1 receptor Vmn1r93
mm9_v1_chr2_-_11475555_11475702	0.045891	bHLH_family.p2	NM_001177758|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK138807|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr1_+_60803231_60803317	0.0458155	bHLH_family.p2	NM_007642|Cd28|12487|CD28 antigen	AK041322|Cd28|12487|CD28 antigen	M34563|Cd28|12487|CD28 antigen	AK088021|Cd28|12487|CD28 antigen	AK030812|Cd28|12487|CD28 antigen	BC064058|Cd28|12487|CD28 antigen
mm9_v1_chr19_+_5740903_5740936	0.0457517	bHLH_family.p2	AK080869|Ltbp3|16998|latent transforming growth factor beta binding protein 3	NM_008520|Ltbp3|16998|latent transforming growth factor beta binding protein 3
mm9_v1_chr11_-_43561446_43561512	0.0456343	bHLH_family.p2	AK019021|Ttc1|66827|tetratricopeptide repeat domain 1	BC010236|Ttc1|66827|tetratricopeptide repeat domain 1	NM_133795|Ttc1|66827|tetratricopeptide repeat domain 1	AK166431|Ttc1|66827|tetratricopeptide repeat domain 1	AK170032|Ttc1|66827|tetratricopeptide repeat domain 1	AK170230|Ttc1|66827|tetratricopeptide repeat domain 1	AK077715|Ttc1|66827|tetratricopeptide repeat domain 1
mm9_v1_chr18_-_50728323_50728377	0.0454444	bHLH_family.p2	AK014922|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A	BC048447|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A	NM_026108|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A	AK007231|Hdhd1a|67365|haloacid dehalogenase-like hydrolase domain containing 1A
mm9_v1_chr8_+_47249009_47249101	0.045365	bHLH_family.p2	AK048125|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK129358|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK082519|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	BC049135|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK020894|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK020776|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK016776|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene
mm9_v1_chr14_+_18814157_18814390	0.045284	bHLH_family.p2	BC089035|Thrb|21834|thyroid hormone receptor beta	NM_009380|Thrb|21834|thyroid hormone receptor beta	BC119553|Thrb|21834|thyroid hormone receptor beta	BC119552|Thrb|21834|thyroid hormone receptor beta	S62758|Thrb|21834|thyroid hormone receptor beta	AB221613|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr12_-_82480450_82480472	0.0452741	bHLH_family.p2	BC141094|Gm4787|214321|predicted gene 4787	NM_001038995|Gm4787|214321|predicted gene 4787
mm9_v1_chr2_-_121282428_121282516	0.0451569	bHLH_family.p2	BC026459|Serinc4|574418|serine incorporator 4	BC083132|Serinc4|574418|serine incorporator 4	NM_001025371|Serinc4|574418|serine incorporator 4	AK044479|Serinc4|574418|serine incorporator 4
mm9_v1_chr16_+_58670320_58670440	0.0451297	bHLH_family.p2	NM_007757|Cpox|12892|coproporphyrinogen oxidase	D16333|Cpox|12892|coproporphyrinogen oxidase	AK157277|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr19_-_39961258_39961288	0.0450933	bHLH_family.p2	NM_001104525|Cyp2c69|100043108|cytochrome P450, family 2, subfamily c, polypeptide 69	BC145630|Cyp2c69|100043108|cytochrome P450, family 2, subfamily c, polypeptide 69
mm9_v1_chr4_+_137860701_137860792	0.0447383	bHLH_family.p2	AK081542|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK150683|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK148095|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK084267|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK077651|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase
mm9_v1_chr5_-_30764170_30764304	0.0438235	bHLH_family.p2	AY586513|Otof|83762|otoferlin	BC145107|Otof|83762|otoferlin	BC145108|Otof|83762|otoferlin	BC150702|Otof|83762|otoferlin	AF183183|Otof|83762|otoferlin	AF183184|Otof|83762|otoferlin	AK147256|Otof|83762|otoferlin	AK147434|Otof|83762|otoferlin	AK046460|Otof|83762|otoferlin	NM_001100395|Otof|83762|otoferlin	NM_031875|Otof|83762|otoferlin
mm9_v1_chr4_+_134708410_134708433	0.0436397	bHLH_family.p2	AF155880|Runx3|12399|runt related transcription factor 3
mm9_v1_chrX_-_35774388_35774405	0.0435117	bHLH_family.p2	AK080234|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr10_+_92951512_92951516	0.0431987	bHLH_family.p2	AK014518|Hal|15109|histidine ammonia lyase	NM_010401|Hal|15109|histidine ammonia lyase	BC157999|Hal|15109|histidine ammonia lyase
mm9_v1_chr6_-_38074549_38074585	0.0427779	bHLH_family.p2	AK165464|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AF435090|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK128892|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK143790|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	NM_080467|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4
mm9_v1_chr10_+_127795461_127795537	0.0426709	bHLH_family.p2	DQ403125|Cs|12974|citrate synthase	AK012104|Cs|12974|citrate synthase
mm9_v1_chr2_-_164630371_164630416	0.0424208	bHLH_family.p2	AF441166|Acot8|170789|acyl-CoA thioesterase 8	NM_133240|Acot8|170789|acyl-CoA thioesterase 8
mm9_v1_chr4_-_143405981_143405995	0.0423616	bHLH_family.p2	BC080785|Gm13084|381569|predicted gene 13084	AK145369|Gm13084|381569|predicted gene 13084	NM_001005371|Gm13084|381569|predicted gene 13084
mm9_v1_chr15_-_89672199_89672350	0.0418788	bHLH_family.p2	AB026807|Syt10|54526|synaptotagmin X	BC125632|Syt10|54526|synaptotagmin X	BC125634|Syt10|54526|synaptotagmin X	NM_018803|Syt10|54526|synaptotagmin X
mm9_v1_chr11_+_95122842_95123008	0.0418222	bHLH_family.p2	AF235035|Tac4|93670|tachykinin 4	NM_053093|Tac4|93670|tachykinin 4	BC119426|Tac4|93670|tachykinin 4	AF515827|Tac4|93670|tachykinin 4
mm9_v1_chr10_-_78180902_78181043	0.0417314	bHLH_family.p2	AJ007750|Casp14|12365|caspase 14	BC101959|Casp14|12365|caspase 14	BC101960|Casp14|12365|caspase 14	BC103555|Casp14|12365|caspase 14	BC103556|Casp14|12365|caspase 14	AK081645|Casp14|12365|caspase 14	NM_009809|Casp14|12365|caspase 14
mm9_v1_chr11_+_105846442_105846551	0.0412993	bHLH_family.p2	BC052531|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm9_v1_chr18_+_4165829_4165870	0.041277	bHLH_family.p2	AK006241|Lyzl1|67328|lysozyme-like 1	AK006630|Lyzl1|67328|lysozyme-like 1	NM_026092|Lyzl1|67328|lysozyme-like 1	BC048450|Lyzl1|67328|lysozyme-like 1	AY572447|Lyzl1|67328|lysozyme-like 1
mm9_v1_chr9_+_54442900_54442929	0.0404448	bHLH_family.p2	AK003393|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK146717|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr14_+_64712532_64712532	0.0404353	bHLH_family.p2	BC048657|Prss51|74215|protease, serine, 51	NM_001193631|Prss51|74215|protease, serine, 51
mm9_v1_chr5_-_145652207_145652313	0.0403566	bHLH_family.p2	AK034736|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1
mm9_v1_chr7_+_63097598_63097661	0.0401388	bHLH_family.p2	AK220320|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK167068|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK044175|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK152558|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK146613|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AF072697|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	BC047135|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK128952|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK157773|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr5_+_122855939_122855963	0.0400751	bHLH_family.p2	AK207142|Arpc3|56378|actin related protein 2/3 complex, subunit 3
mm9_v1_chr11_-_32167657_32167706	0.0400346	bHLH_family.p2	AK154884|Nprl3|17168|nitrogen permease regulator-like 3 (S. cerevisiae)	AK039600|Nprl3|17168|nitrogen permease regulator-like 3 (S. cerevisiae)	AK090290|Nprl3|17168|nitrogen permease regulator-like 3 (S. cerevisiae)	BC064471|Nprl3|17168|nitrogen permease regulator-like 3 (S. cerevisiae)
mm9_v1_chr15_+_33012913_33012952	0.0399686	bHLH_family.p2	AF107835|Pgcp|54381|plasma glutamate carboxypeptidase	AK011656|Pgcp|54381|plasma glutamate carboxypeptidase	AK075686|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr9_-_63247025_63247103	0.0395588	bHLH_family.p2	BC100363|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116242|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116243|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK054471|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK009046|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK158428|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	NM_027090|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene
mm9_v1_chr9_+_56266618_56266679	0.0395526	bHLH_family.p2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr9_+_91263809_91263809	0.0393211	bHLH_family.p2	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr1_+_40738460_40738469	0.0392546	bHLH_family.p2	AK077026|Slc9a2|226999|solute carrier family 9 (sodium/hydrogen exchanger), member 2
mm9_v1_chr6_-_113669870_113669904	0.0389826	bHLH_family.p2	BC132230|Ghrl|58991|ghrelin	BC132232|Ghrl|58991|ghrelin	AK008658|Ghrl|58991|ghrelin	AK008860|Ghrl|58991|ghrelin	NM_021488|Ghrl|58991|ghrelin	FJ355945|Ghrl|58991|ghrelin	FJ355944|Ghrl|58991|ghrelin
mm9_v1_chr1_-_65109982_65110015	0.0387501	bHLH_family.p2	K02583|Crygd|12967|crystallin, gamma D	BC057013|Crygd|12967|crystallin, gamma D	AK136286|Crygd|12967|crystallin, gamma D	BC132116|Crygd|12967|crystallin, gamma D	BC132118|Crygd|12967|crystallin, gamma D	NM_007776|Crygd|12967|crystallin, gamma D
mm9_v1_chr1_-_9621172_9621249	0.0382742	bHLH_family.p2	BC037765|2610203C22Rik|72481|RIKEN cDNA 2610203C22 gene	BC064105|2610203C22Rik|72481|RIKEN cDNA 2610203C22 gene	AK011866|2610203C22Rik|72481|RIKEN cDNA 2610203C22 gene	AK082741|2610203C22Rik|72481|RIKEN cDNA 2610203C22 gene	AK009214|2610203C22Rik|72481|RIKEN cDNA 2610203C22 gene
mm9_v1_chr11_-_106077627_106077641	0.0382012	bHLH_family.p2	AK132273|Ccdc47|67163|coiled-coil domain containing 47
mm9_v1_chrX_-_7753020_7753088	0.0378991	bHLH_family.p2	AK166256|Tbc1d25|209815|TBC1 domain family, member 25	AK040932|Tbc1d25|209815|TBC1 domain family, member 25	BC060178|Tbc1d25|209815|TBC1 domain family, member 25
mm9_v1_chr8_+_73051648_73051650	0.0378705	bHLH_family.p2	AK153000|Fkbp8|14232|FK506 binding protein 8	AK165281|Fkbp8|14232|FK506 binding protein 8	AK146122|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr7_-_31011907_31012028	0.0372428	bHLH_family.p2	AK214432|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr7_-_20960758_20960758	0.0371925	bHLH_family.p2	NM_001166713|Gm5728|435949|predicted gene 5728	NM_001166751|Gm8660|667485|predicted gene 8660
mm9_v1_chr9_-_21043375_21043438	0.0369947	bHLH_family.p2	AK046178|Keap1|50868|kelch-like ECH-associated protein 1	AB020063|Keap1|50868|kelch-like ECH-associated protein 1	AK039549|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr9_+_7558476_7558530	0.0361065	bHLH_family.p2	Y13342|Mmp8|17394|matrix metallopeptidase 8
mm9_v1_chr4_-_118862555_118862615	0.0360837	bHLH_family.p2	BC063257|Ermap|27028|erythroblast membrane-associated protein	AF153906|Ermap|27028|erythroblast membrane-associated protein	AK036702|Ermap|27028|erythroblast membrane-associated protein	AK158114|Ermap|27028|erythroblast membrane-associated protein	AK137510|Ermap|27028|erythroblast membrane-associated protein	NM_013848|Ermap|27028|erythroblast membrane-associated protein
mm9_v1_chr8_+_73051651_73051898	0.0352477	bHLH_family.p2	AK167663|Fkbp8|14232|FK506 binding protein 8	AK158155|Fkbp8|14232|FK506 binding protein 8	AY278608|Fkbp8|14232|FK506 binding protein 8	BC027808|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr2_-_112099427_112099447	0.0351078	bHLH_family.p2	BC125332|BC125332|213765|cDNA sequence BC125332	BC125334|BC125332|213765|cDNA sequence BC125332	AK077049|BC125332|213765|cDNA sequence BC125332	NM_172521|BC125332|213765|cDNA sequence BC125332
mm9_v1_chr7_-_118214471_118214595	0.0350871	bHLH_family.p2	AK153701|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr14_+_122419329_122419373	0.0347931	bHLH_family.p2	AK004517|Ubac2|68889|ubiquitin associated domain containing 2
mm9_v1_chr2_-_121206675_121206675	0.0347328	bHLH_family.p2	AF375593|Strc|140476|stereocilin	NM_080459|Strc|140476|stereocilin
mm9_v1_chr4_-_106164724_106164887	0.0347304	bHLH_family.p2	AY373833|Bsnd|140475|Bartter syndrome, infantile, with sensorineural deafness (Barttin)	AF391088|Bsnd|140475|Bartter syndrome, infantile, with sensorineural deafness (Barttin)	AK052587|Bsnd|140475|Bartter syndrome, infantile, with sensorineural deafness (Barttin)	NM_080458|Bsnd|140475|Bartter syndrome, infantile, with sensorineural deafness (Barttin)	BC038287|Bsnd|140475|Bartter syndrome, infantile, with sensorineural deafness (Barttin)
mm9_v1_chr10_+_85484631_85484753	0.0346877	bHLH_family.p2	AK165455|Fbxo7|69754|F-box protein 7	NM_153195|Fbxo7|69754|F-box protein 7	AK150626|Fbxo7|69754|F-box protein 7	AK151025|Fbxo7|69754|F-box protein 7	AK152513|Fbxo7|69754|F-box protein 7	AK147797|Fbxo7|69754|F-box protein 7	BC032153|Fbxo7|69754|F-box protein 7
mm9_v1_chr4_-_148500769_148500849	0.034519	bHLH_family.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr1_+_95031884_95031938	0.0340317	bHLH_family.p2	AK149432|Agxt|11611|alanine-glyoxylate aminotransferase
mm9_v1_chr4_-_133228520_133228564	0.0339385	bHLH_family.p2	AK046527|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK052446|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK148285|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK080590|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	NM_001145955|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	NM_001145956|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	NM_178698|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V
mm9_v1_chr5_+_32913539_32913707	0.0338898	bHLH_family.p2	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chr17_+_47928985_47929151	0.033517	bHLH_family.p2	
mm9_v1_chr18_+_50287848_50287993	0.03342	bHLH_family.p2	AK004866|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK088381|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK147182|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK167060|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK166801|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK169077|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK152532|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK161655|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	BC022175|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	NM_008292|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	X89998|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4
mm9_v1_chr17_-_47824991_47825049	0.0331166	bHLH_family.p2	AK003291|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	AK019199|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	BC037589|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	AK010470|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)
mm9_v1_chr15_+_85566541_85566560	0.0330042	bHLH_family.p2	X57638|Ppara|19013|peroxisome proliferator activated receptor alpha
mm9_v1_chr7_+_19996439_19996453	0.03274	bHLH_family.p2	AK009950|Ckm|12715|creatine kinase, muscle	AK137460|Ckm|12715|creatine kinase, muscle	NM_007710|Ckm|12715|creatine kinase, muscle	X03233|Ckm|12715|creatine kinase, muscle	BC132424|Ckm|12715|creatine kinase, muscle	BC132426|Ckm|12715|creatine kinase, muscle
mm9_v1_chr17_-_65991507_65991543	0.0325229	bHLH_family.p2	BC060981|Txndc2|213272|thioredoxin domain containing 2 (spermatozoa)	NM_001146002|Txndc2|213272|thioredoxin domain containing 2 (spermatozoa)
mm9_v1_chr7_-_106775612_106775612	0.0323206	bHLH_family.p2	NM_001195529|Gm4980|245190|predicted gene 4980
mm9_v1_chr10_-_62255007_62255115	0.0322848	bHLH_family.p2	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr15_-_36485294_36485327	0.032247	bHLH_family.p2	BC061007|Snx31|66696|sorting nexin 31	AK035226|Snx31|66696|sorting nexin 31	NM_025712|Snx31|66696|sorting nexin 31	AK014536|Snx31|66696|sorting nexin 31	AK034196|Snx31|66696|sorting nexin 31
mm9_v1_chr8_-_108457731_108457761	0.032198	bHLH_family.p2	AK220246|Ctrl|109660|chymotrypsin-like	AK007333|Ctrl|109660|chymotrypsin-like	AK009019|Ctrl|109660|chymotrypsin-like	BC087918|Ctrl|109660|chymotrypsin-like	AB016228|Ctrl|109660|chymotrypsin-like	NM_023182|Ctrl|109660|chymotrypsin-like
mm9_v1_chr8_+_73058795_73058894	0.0321126	bHLH_family.p2	AK189244|Fkbp8|14232|FK506 binding protein 8	AK188492|Fkbp8|14232|FK506 binding protein 8	AK190969|Fkbp8|14232|FK506 binding protein 8	AK205574|Fkbp8|14232|FK506 binding protein 8	AK212129|Fkbp8|14232|FK506 binding protein 8	AK207414|Fkbp8|14232|FK506 binding protein 8	AK192821|Fkbp8|14232|FK506 binding protein 8	AK208969|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr17_-_34976745_34976778	0.0318329	bHLH_family.p2	AK181557|Skiv2l|108077|superkiller viralicidic activity 2-like (S. cerevisiae)
mm9_v1_chr10_+_69707965_69708068	0.0315675	bHLH_family.p2	AK004684|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	AK004556|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	NM_025807|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	BC055839|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	BC034205|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm9_v1_chr10_+_99823971_99823971	0.0315176	bHLH_family.p2	BC158090|Gm4303|100043231|predicted gene 4303	NM_001166638|Gm4303|100043231|predicted gene 4303	NM_001166639|Gm4305|100043235|predicted gene 4305	NM_001166641|Gm4307|100043239|predicted gene 4307
mm9_v1_chr7_+_52897090_52897145	0.0314433	bHLH_family.p2	AK052976|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator	AK036109|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator
mm9_v1_chr11_+_60541880_60542010	0.0312315	bHLH_family.p2	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chr7_-_3796651_3796654	0.0311509	bHLH_family.p2	AK140776|Pira2|18725|paired-Ig-like receptor A2	AK137475|Pira2|18725|paired-Ig-like receptor A2	AK172046|Pira2|18725|paired-Ig-like receptor A2	NM_011089|Pira2|18725|paired-Ig-like receptor A2
mm9_v1_chr3_-_46251843_46251862	0.0310686	bHLH_family.p2	NM_001101479|Pabpc4l|241989|poly(A) binding protein, cytoplasmic 4-like
mm9_v1_chr10_+_99803471_99803471	0.0310107	bHLH_family.p2	BC158090|Gm4303|100043231|predicted gene 4303	NM_001166638|Gm4303|100043231|predicted gene 4303	NM_001166639|Gm4305|100043235|predicted gene 4305	NM_001166641|Gm4307|100043239|predicted gene 4307
mm9_v1_chrX_-_153853209_153853243	0.0307798	bHLH_family.p2	U49908|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	NM_011077|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	U73910|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)	AK158481|Phex|18675|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm9_v1_chr18_-_38158371_38158561	0.0307436	bHLH_family.p2	AK036638|Arap3|106952|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	AF469622|Arap3|106952|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
mm9_v1_chr11_-_3429909_3429923	0.0307365	bHLH_family.p2	AK160492|Smtn|29856|smoothelin
mm9_v1_chr11_-_3814666_3814666	0.0306421	bHLH_family.p2	AK039786|Slc35e4|103710|solute carrier family 35, member E4	NM_153142|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr12_+_73885063_73885417	0.0305413	bHLH_family.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr5_+_144383313_144383461	0.0305196	bHLH_family.p2	NM_011182|Cyth3|19159|cytohesin 3	AK142407|Cyth3|19159|cytohesin 3	AK220565|Cyth3|19159|cytohesin 3	AK159229|Cyth3|19159|cytohesin 3	BC035296|Cyth3|19159|cytohesin 3	AK036191|Cyth3|19159|cytohesin 3	AK168566|Cyth3|19159|cytohesin 3	AF084221|Cyth3|19159|cytohesin 3	AB013470|Cyth3|19159|cytohesin 3
mm9_v1_chr1_-_53813191_53813277	0.030298	bHLH_family.p2	
mm9_v1_chr3_-_122241909_122241984	0.0301999	bHLH_family.p2	AK019185|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr17_-_56857074_56857131	0.0301597	bHLH_family.p2	BC039944|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	BC058424|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	NM_001166474|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein
mm9_v1_chr4_+_97439255_97439362	0.0298063	bHLH_family.p2	AK037386|A130013F12Rik|320308|RIKEN cDNA A130013F12 gene	D90174|Nfia|18027|nuclear factor I/A
mm9_v1_chr7_-_148462649_148462686	0.029655	bHLH_family.p2	BC043336|Cdhr5|72040|cadherin-related family member 5	BC054469|Cdhr5|72040|cadherin-related family member 5	AF462391|Cdhr5|72040|cadherin-related family member 5	AK007988|Cdhr5|72040|cadherin-related family member 5	AK027913|Cdhr5|72040|cadherin-related family member 5	NM_001114322|Cdhr5|72040|cadherin-related family member 5	NM_028069|Cdhr5|72040|cadherin-related family member 5
mm9_v1_chr3_+_89580481_89580505	0.0295823	bHLH_family.p2	BC060966|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr2_-_110203298_110203336	0.0293897	bHLH_family.p2	AK011548|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK012026|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr8_-_122071463_122071711	0.0292107	bHLH_family.p2	AF094820|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1	DQ913734|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1	AK210818|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1	BC054837|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1
mm9_v1_chr7_+_25155455_25155523	0.0290648	bHLH_family.p2	AB128930|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	AF072884|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	AK085752|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm9_v1_chr17_-_24317553_24317598	0.0289284	bHLH_family.p2	AK035486|Tbc1d24|224617|TBC1 domain family, member 24
mm9_v1_chr17_+_72119030_72119041	0.0289166	bHLH_family.p2	AK029962|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_175378|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK018895|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK075758|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK161301|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr3_+_40650766_40650920	0.0287446	bHLH_family.p2	AK014120|3110057O12Rik|269423|RIKEN cDNA 3110057O12 gene	AK019438|3110057O12Rik|269423|RIKEN cDNA 3110057O12 gene	AK009813|Gm2011|100039027|predicted gene 2011
mm9_v1_chr10_+_20760625_20760625	0.0284681	bHLH_family.p2	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr4_+_103237118_103237275	0.0279968	bHLH_family.p2	BC008258|Actg1|11465|actin, gamma, cytoplasmic 1	AK184769|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr7_+_52676315_52676315	0.0277145	bHLH_family.p2	NM_008497|Lhb|16866|luteinizing hormone beta
mm9_v1_chr11_-_83242956_83243022	0.0266767	bHLH_family.p2	NM_001013759|Gas2l2|237891|growth arrest-specific 2 like 2	BC147480|Gas2l2|237891|growth arrest-specific 2 like 2	BC150847|Gas2l2|237891|growth arrest-specific 2 like 2
mm9_v1_chr4_+_135750500_135750521	0.026646	bHLH_family.p2	AK033797|E2f2|242705|E2F transcription factor 2
mm9_v1_chr1_+_133867185_133867185	0.0263317	bHLH_family.p2	BC031381|Slc45a3|212980|solute carrier family 45, member 3	NM_145977|Slc45a3|212980|solute carrier family 45, member 3
mm9_v1_chr3_+_3508029_3508207	0.0259793	bHLH_family.p2	AK143816|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	NM_013920|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	AJ242626|Hnf4g|30942|hepatocyte nuclear factor 4, gamma	BC125519|Hnf4g|30942|hepatocyte nuclear factor 4, gamma
mm9_v1_chr11_-_65083322_65083378	0.0259468	bHLH_family.p2	BC141281|Myocd|214384|myocardin	BC145607|Myocd|214384|myocardin
mm9_v1_chr10_-_80048413_80048422	0.0255578	bHLH_family.p2	
mm9_v1_chr8_-_8660610_8660772	0.0251805	bHLH_family.p2	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chr4_+_77857988_77858006	0.0242328	bHLH_family.p2	AK043640|B230208B08Rik|319499|RIKEN cDNA B230208B08 gene
mm9_v1_chr4_-_126106749_126106807	0.0237848	bHLH_family.p2	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr6_+_70165393_70165411	0.0234541	bHLH_family.p2	X05877|LOC672450|672450|V(kappa) gene product	V00810|Igk-V28|16114|immunoglobulin kappa chain variable 28 (V28)	BC091754|Igkv6-23|637227|immunoglobulin kappa variable 6-23
mm9_v1_chr8_-_88079180_88079308	0.0233873	bHLH_family.p2	AK169169|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2	AK031858|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2	AK083208|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2	AK077672|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2	BC003420|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr6_-_94233855_94233910	0.0232835	bHLH_family.p2	AK046635|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC095943|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001029850|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_010367|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK147358|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr7_+_116077936_116077945	0.0231583	bHLH_family.p2	BC070473|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	BC083190|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr17_+_29169665_29169685	0.0229696	bHLH_family.p2	X53824|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr5_+_76612903_76613006	0.022832	bHLH_family.p2	NM_011626|Tmem165|21982|transmembrane protein 165	BC037638|Tmem165|21982|transmembrane protein 165	AK004829|Tmem165|21982|transmembrane protein 165	M23568|Tmem165|21982|transmembrane protein 165
mm9_v1_chr1_-_72258684_72258880	0.0227807	bHLH_family.p2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr18_-_7626805_7626890	0.0224191	bHLH_family.p2	AK033081|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	BC049662|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK012883|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK036956|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK035303|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK050710|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK162694|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK078849|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001081287|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001161620|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK027937|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm9_v1_chr11_-_101755622_101755677	0.0222433	bHLH_family.p2	Z15103|Meox1|17285|mesenchyme homeobox 1	BC011082|Meox1|17285|mesenchyme homeobox 1	NM_010791|Meox1|17285|mesenchyme homeobox 1	AK052370|Meox1|17285|mesenchyme homeobox 1
mm9_v1_chr4_-_153400020_153400152	0.0218253	bHLH_family.p2	AK158109|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	BC055944|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK165247|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK167398|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK028394|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK012228|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	NM_001163721|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	NM_001163722|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene
mm9_v1_chr1_-_123229156_123229165	0.0216429	bHLH_family.p2	AK040703|Insig2|72999|insulin induced gene 2	NM_178082|Insig2|72999|insulin induced gene 2	AY156084|Insig2|72999|insulin induced gene 2
mm9_v1_chrX_-_35065833_35065833	0.0212965	bHLH_family.p2	AJ972671|Rhox4g|664608|reproductive homeobox 4G	NM_001039698|Rhox4g|664608|reproductive homeobox 4G
mm9_v1_chr13_-_114453813_114453883	0.0211453	bHLH_family.p2	BC092376|Hspb3|56534|heat shock protein 3	AF203375|Hspb3|56534|heat shock protein 3	BC065388|Hspb3|56534|heat shock protein 3	AK009633|Hspb3|56534|heat shock protein 3	NM_019960|Hspb3|56534|heat shock protein 3
mm9_v1_chr18_+_36440748_36440822	0.0207121	bHLH_family.p2	NM_008989|Pura|19290|purine rich element binding protein A	U02098|Pura|19290|purine rich element binding protein A
mm9_v1_chr10_+_99808603_99808605	0.0205882	bHLH_family.p2	BC158099|Gm4302|100043227|predicted gene 4302	NM_001166634|Gm4302|100043227|predicted gene 4302	BC158090|Gm4303|100043231|predicted gene 4303	NM_001166638|Gm4303|100043231|predicted gene 4303	NM_001166639|Gm4305|100043235|predicted gene 4305	NM_001166641|Gm4307|100043239|predicted gene 4307
mm9_v1_chr7_-_104886507_104886549	0.0204526	bHLH_family.p2	AB028148|Aqp11|66333|aquaporin 11	AK040045|Aqp11|66333|aquaporin 11	BC037088|Aqp11|66333|aquaporin 11	BC068103|Aqp11|66333|aquaporin 11
mm9_v1_chr2_+_130732201_130732231	0.020406	bHLH_family.p2	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr4_+_123465116_123465145	0.0202495	bHLH_family.p2	AK078969|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)	NM_183163|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)	BC115494|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)	BC115495|Rhbdl2|230726|rhomboid, veinlet-like 2 (Drosophila)
mm9_v1_chr17_-_35342157_35342435	0.0200862	bHLH_family.p2	AK080308|Lta|16992|lymphotoxin A	AK153694|Lta|16992|lymphotoxin A	BC099464|Lta|16992|lymphotoxin A	NM_010735|Lta|16992|lymphotoxin A	AK156659|Lta|16992|lymphotoxin A
mm9_v1_chr10_+_22364816_22364969	0.0200001	bHLH_family.p2	AJ549317|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	NM_178934|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK143263|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK028970|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC096454|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK031659|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AY230881|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK035972|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC116315|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC116314|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC138316|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC138317|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12
mm9_v1_chr7_-_111299000_111299069	0.0197651	bHLH_family.p2	BC111901|Ubqlnl|244179|ubiquilin-like	BC113134|Ubqlnl|244179|ubiquilin-like	AK076645|Ubqlnl|244179|ubiquilin-like	NM_198624|Ubqlnl|244179|ubiquilin-like
mm9_v1_chr4_+_21703416_21703444	0.0196493	bHLH_family.p2	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr19_+_10257363_10257524	0.0195287	bHLH_family.p2	NM_146094|Fads1|76267|fatty acid desaturase 1	BC026831|Fads1|76267|fatty acid desaturase 1	AK154367|Fads1|76267|fatty acid desaturase 1	BC022139|Fads1|76267|fatty acid desaturase 1	BC026848|Fads1|76267|fatty acid desaturase 1	AB072976|Fads1|76267|fatty acid desaturase 1	AK080706|Fads1|76267|fatty acid desaturase 1	AF061504|Fads1|76267|fatty acid desaturase 1	AK083959|Fads1|76267|fatty acid desaturase 1	BC063053|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr10_+_99813724_99813726	0.0189683	bHLH_family.p2	BC158099|Gm4302|100043227|predicted gene 4302	NM_001166634|Gm4302|100043227|predicted gene 4302	BC158090|Gm4303|100043231|predicted gene 4303	NM_001166638|Gm4303|100043231|predicted gene 4303	NM_001166639|Gm4305|100043235|predicted gene 4305	NM_001166641|Gm4307|100043239|predicted gene 4307
mm9_v1_chr10_-_99845190_99845193	0.0189246	bHLH_family.p2	BC158090|Gm4303|100043231|predicted gene 4303	BC147487|Gm4312|100043247|predicted gene 4312	NM_001166636|Gm4312|100043247|predicted gene 4312	NM_001166637|Gm4301|100043224|predicted gene 4301
mm9_v1_chr15_-_82953171_82953235	0.0188787	bHLH_family.p2	AK036247|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK159553|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK003698|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK168850|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK153565|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK032596|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK146821|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK168189|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK088456|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	NM_029101|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm9_v1_chr9_+_5298516_5298702	0.0188351	bHLH_family.p2	BC008152|Casp1|12362|caspase 1	NM_009807|Casp1|12362|caspase 1	L28095|Casp1|12362|caspase 1	AK132826|Casp1|12362|caspase 1	AK163069|Casp1|12362|caspase 1
mm9_v1_chr17_-_66943961_66943961	0.018709	bHLH_family.p2	AK018663|9130404H23Rik|74556|RIKEN cDNA 9130404H23 gene	NM_028998|9130404H23Rik|74556|RIKEN cDNA 9130404H23 gene
mm9_v1_chr5_-_100812885_100812885	0.0174627	bHLH_family.p2	BC054358|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr8_+_55635768_55635781	0.0170333	bHLH_family.p2	BC108405|Asb5|76294|ankyrin repeat and SOCs box-containing 5	AF398966|Asb5|76294|ankyrin repeat and SOCs box-containing 5
mm9_v1_chr5_+_148241736_148241750	0.0168468	bHLH_family.p2	AK153632|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr6_+_83067649_83067918	0.0167646	bHLH_family.p2	AK007528|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr10_-_127188724_127188780	0.0167518	bHLH_family.p2	BC125279|Gpr182|11536|G protein-coupled receptor 182	D17292|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr8_+_73051625_73051647	0.0164266	bHLH_family.p2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr8_-_38001686_38001686	0.0163554	bHLH_family.p2	HM008381|Dlc1|50768|deleted in liver cancer 1	NM_001194940|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr7_-_109398578_109398649	0.0162351	bHLH_family.p2	EF524070|Rhog|56212|ras homolog gene family, member G	BC059775|Rhog|56212|ras homolog gene family, member G	AK169853|Rhog|56212|ras homolog gene family, member G	AK143623|Rhog|56212|ras homolog gene family, member G	AK149848|Rhog|56212|ras homolog gene family, member G	NM_019566|Rhog|56212|ras homolog gene family, member G
mm9_v1_chr7_-_17260959_17261053	0.0161651	bHLH_family.p2	BC099491|Ceacam15|101434|carcinoembryonic antigen-related cell adhesion molecule 15	AK049385|Ceacam15|101434|carcinoembryonic antigen-related cell adhesion molecule 15	BC125404|Ceacam15|101434|carcinoembryonic antigen-related cell adhesion molecule 15	BC125406|Ceacam15|101434|carcinoembryonic antigen-related cell adhesion molecule 15	NM_175315|Ceacam15|101434|carcinoembryonic antigen-related cell adhesion molecule 15
mm9_v1_chr4_+_155336386_155336439	0.0161612	bHLH_family.p2	AK004116|Fam132a|67389|family with sequence similarity 132, member A	NM_026125|Fam132a|67389|family with sequence similarity 132, member A	AK007335|Fam132a|67389|family with sequence similarity 132, member A	AK002876|Fam132a|67389|family with sequence similarity 132, member A
mm9_v1_chr13_-_12554004_12554004	0.0157578	bHLH_family.p2	NM_001199043|Lgals8|56048|lectin, galactose binding, soluble 8	NM_018886|Lgals8|56048|lectin, galactose binding, soluble 8
mm9_v1_chr14_-_51766415_51766443	0.0157576	bHLH_family.p2	M27814|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	BC030036|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	AK075775|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	NM_011271|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)
mm9_v1_chr17_-_31774075_31774182	0.0156948	bHLH_family.p2	BC013472|Cbs|12411|cystathionine beta-synthase	NM_178224|Cbs|12411|cystathionine beta-synthase	BC013480|Cbs|12411|cystathionine beta-synthase	BC026595|Cbs|12411|cystathionine beta-synthase	NM_144855|Cbs|12411|cystathionine beta-synthase	BC022144|Cbs|12411|cystathionine beta-synthase	AK077669|Cbs|12411|cystathionine beta-synthase	AK085692|Cbs|12411|cystathionine beta-synthase	U43721|Cbs|12411|cystathionine beta-synthase
mm9_v1_chr4_+_109079752_109079781	0.0155573	bHLH_family.p2	BC026660|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK172951|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr8_+_61390551_61390637	0.0153785	bHLH_family.p2	BC030500|BC030500|234290|cDNA sequence BC030500	NM_173411|BC030500|234290|cDNA sequence BC030500
mm9_v1_chr4_+_94406190_94406316	0.01479	bHLH_family.p2	X67553|Tek|21687|endothelial-specific receptor tyrosine kinase	X71426|Tek|21687|endothelial-specific receptor tyrosine kinase	S67051|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr6_+_140602773_140602776	0.0145264	bHLH_family.p2	AK050137|Aebp2|11569|AE binding protein 2
mm9_v1_chr8_+_4248213_4248213	0.0139169	bHLH_family.p2	NM_001195258|Gm14378|100044509|predicted gene 14378
mm9_v1_chr2_-_125142715_125142753	0.0136691	bHLH_family.p2	AK137018|Fbn1|14118|fibrillin 1
mm9_v1_chr11_-_75346554_75346608	0.0135217	bHLH_family.p2	
mm9_v1_chr7_-_133514716_133514787	0.0134762	bHLH_family.p2	AK201150|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr5_+_123093892_123094082	0.0134235	bHLH_family.p2	AK144585|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_001038839|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_001038845|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_001038887|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_011027|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AK171132|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC062808|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC141120|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AK145211|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AK145050|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AJ009823|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AJ489296|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AJ489297|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC128303|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC128304|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7
mm9_v1_chr2_-_172765592_172765841	0.0134049	bHLH_family.p2	AK020411|Bmp7|12162|bone morphogenetic protein 7	X56906|Bmp7|12162|bone morphogenetic protein 7	BC010771|Bmp7|12162|bone morphogenetic protein 7	NM_007557|Bmp7|12162|bone morphogenetic protein 7
mm9_v1_chr2_+_84820615_84820637	0.0133996	bHLH_family.p2	AK156715|Prg2|19074|proteoglycan 2, bone marrow	AK010901|Prg2|19074|proteoglycan 2, bone marrow	NM_008920|Prg2|19074|proteoglycan 2, bone marrow	BC109348|Prg2|19074|proteoglycan 2, bone marrow
mm9_v1_chr6_-_66629677_66629677	0.0131196	bHLH_family.p2	NM_134167|Vmn1r35|171185|vomeronasal 1 receptor 35
mm9_v1_chr7_-_3796619_3796646	0.0130634	bHLH_family.p2	U96683|Pira2|18725|paired-Ig-like receptor A2	AF288356|Lilrb3|18733|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3	U96682|Pira1|18722|paired-Ig-like receptor A1	BC026937|Lilrb3|18733|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3
mm9_v1_chr10_+_99829132_99829132	0.0129865	bHLH_family.p2	BC147487|Gm4312|100043247|predicted gene 4312	NM_001166636|Gm4312|100043247|predicted gene 4312	NM_001166637|Gm4301|100043224|predicted gene 4301
mm9_v1_chr14_-_55545586_55545624	0.0126795	bHLH_family.p2	NM_010112|Efs|13644|embryonal Fyn-associated substrate
mm9_v1_chr9_-_121701480_121701624	0.0126555	bHLH_family.p2	BC024464|Hhatl|74770|hedgehog acyltransferase-like	AK003605|Hhatl|74770|hedgehog acyltransferase-like	NM_029095|Hhatl|74770|hedgehog acyltransferase-like
mm9_v1_chr15_-_74672048_74672072	0.0124092	bHLH_family.p2	AK142439|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK163083|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK168839|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139248|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139250|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	NM_001033229|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1
mm9_v1_chr18_+_65185527_65185593	0.012408	bHLH_family.p2	AK004969|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr2_-_130408276_130408310	0.0121725	bHLH_family.p2	NM_009732|Avp|11998|arginine vasopressin	BC051997|Avp|11998|arginine vasopressin	AK138179|Avp|11998|arginine vasopressin
mm9_v1_chr11_+_81871333_81871447	0.0119157	bHLH_family.p2	NM_011330|Ccl11|20292|chemokine (C-C motif) ligand 11	AK009307|Ccl11|20292|chemokine (C-C motif) ligand 11	AK010146|Ccl11|20292|chemokine (C-C motif) ligand 11	U40672|Ccl11|20292|chemokine (C-C motif) ligand 11	BC027521|Ccl11|20292|chemokine (C-C motif) ligand 11	U26426|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128205|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128206|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128207|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128208|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128209|Ccl11|20292|chemokine (C-C motif) ligand 11
mm9_v1_chr7_-_133646767_133646989	0.0118205	bHLH_family.p2	BC054483|Atxn2l|233871|ataxin 2-like	NM_183020|Atxn2l|233871|ataxin 2-like	AK155062|Atxn2l|233871|ataxin 2-like	AK084800|Atxn2l|233871|ataxin 2-like
mm9_v1_chr7_+_109386818_109386954	0.011704	bHLH_family.p2	AK019004|Pgap2|233575|post-GPI attachment to proteins 2
mm9_v1_chr6_+_92041408_92041534	0.0112589	bHLH_family.p2	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr7_-_21060272_21060273	0.0109529	bHLH_family.p2	BC107204|Gm10670|100042971|predicted gene 10670	NM_001167160|Gm10665|100043058|predicted gene 10665	NM_001167161|Gm10670|100042971|predicted gene 10670
mm9_v1_chr7_-_21883531_21883531	0.0108796	bHLH_family.p2	NM_001166741|Vmn1r121|667240|vomeronasal 1 receptor 121
mm9_v1_chr5_+_66254807_66254997	0.010798	bHLH_family.p2	NM_001081105|Rhoh|74734|ras homolog gene family, member H	AK017885|Rhoh|74734|ras homolog gene family, member H	AK169618|Rhoh|74734|ras homolog gene family, member H
mm9_v1_chr12_-_88813216_88813284	0.0106645	bHLH_family.p2	AK167695|Snw1|66354|SNW domain containing 1	AX775977|Snw1|66354|SNW domain containing 1	AX775979|Snw1|66354|SNW domain containing 1	AK166163|Snw1|66354|SNW domain containing 1	NM_025507|Snw1|66354|SNW domain containing 1
mm9_v1_chr19_+_34365195_34365204	0.0105542	bHLH_family.p2	AK002590|Fas|14102|Fas (TNF receptor superfamily member 6)	DQ846748|Fas|14102|Fas (TNF receptor superfamily member 6)	DQ846749|Fas|14102|Fas (TNF receptor superfamily member 6)
mm9_v1_chrX_+_72627673_72627773	0.0105356	bHLH_family.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr3_-_74947644_74947693	0.0103635	bHLH_family.p2	BC050789|Zbbx|213234|zinc finger, B-box domain containing	BC100435|Zbbx|213234|zinc finger, B-box domain containing	NM_172515|Zbbx|213234|zinc finger, B-box domain containing	AK029899|Zbbx|213234|zinc finger, B-box domain containing	AK133102|Zbbx|213234|zinc finger, B-box domain containing
mm9_v1_chr2_+_25145414_25145466	0.0101103	bHLH_family.p2	NM_146117|Lrrc26|227618|leucine rich repeat containing 26	AK137758|Lrrc26|227618|leucine rich repeat containing 26	BC004853|Lrrc26|227618|leucine rich repeat containing 26	AK142669|Lrrc26|227618|leucine rich repeat containing 26	BC024531|Lrrc26|227618|leucine rich repeat containing 26	BC024539|Lrrc26|227618|leucine rich repeat containing 26
mm9_v1_chr18_+_65183342_65183377	0.0100683	bHLH_family.p2	AK122283|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr16_+_36694118_36694140	0.0100348	bHLH_family.p2	AK050806|Ildr1|106347|immunoglobulin-like domain containing receptor 1	BC010485|Ildr1|106347|immunoglobulin-like domain containing receptor 1	NM_134109|Ildr1|106347|immunoglobulin-like domain containing receptor 1	AK035504|Ildr1|106347|immunoglobulin-like domain containing receptor 1	AK036844|Ildr1|106347|immunoglobulin-like domain containing receptor 1
mm9_v1_chr4_+_147433130_147433233	0.00981478	bHLH_family.p2	AK191706|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr7_+_19967358_19967392	0.00969526	bHLH_family.p2	AK141692|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082323|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK145969|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082761|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	NM_007949|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	BC034517|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2
mm9_v1_chrX_+_137457727_137457737	0.00966254	bHLH_family.p2	AK006862|Vsig1|78789|V-set and immunoglobulin domain containing 1	NM_026103|Vsig1|78789|V-set and immunoglobulin domain containing 1	AK006251|Vsig1|78789|V-set and immunoglobulin domain containing 1	BC048589|Vsig1|78789|V-set and immunoglobulin domain containing 1
mm9_v1_chr7_+_20779058_20779058	0.00954508	bHLH_family.p2	NM_001166750|Vmn1r143|667469|vomeronasal 1 receptor 143	NM_001167538|Vmn1r95|100312475|vomeronasal 1 receptor, 95
mm9_v1_chr12_+_118997623_118997625	0.00943508	bHLH_family.p2	AK134824|Rapgef5|217944|Rap guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr13_-_67461473_67461507	0.00928155	bHLH_family.p2	BC141233|Zfp953|629016|zinc finger protein 953	AK143165|Zfp953|629016|zinc finger protein 953	NM_001038651|Zfp953|629016|zinc finger protein 953
mm9_v1_chrX_+_166123130_166123181	0.0091059	bHLH_family.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chr5_+_32794685_32794762	0.00908244	bHLH_family.p2	AK017392|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr7_-_31606540_31606666	0.00897437	bHLH_family.p2	AF545043|Ffar2|233079|free fatty acid receptor 2	NM_001168509|Ffar2|233079|free fatty acid receptor 2
mm9_v1_chr1_-_195027508_195027739	0.00880744	bHLH_family.p2	AK036608|Traf3ip3|215243|TRAF3 interacting protein 3	BC036561|Traf3ip3|215243|TRAF3 interacting protein 3	AK031400|Traf3ip3|215243|TRAF3 interacting protein 3	AK080080|Traf3ip3|215243|TRAF3 interacting protein 3	AK041994|Traf3ip3|215243|TRAF3 interacting protein 3	NM_153137|Traf3ip3|215243|TRAF3 interacting protein 3
mm9_v1_chr2_+_131776596_131776620	0.00858602	bHLH_family.p2	AK043023|Prnd|26434|prion protein dublet	AK161043|Prnd|26434|prion protein dublet	DQ832281|Prnd|26434|prion protein dublet	NM_001126338|Prnd|26434|prion protein dublet	NM_023043|Prnd|26434|prion protein dublet	AF192384|Prnd|26434|prion protein dublet	AF192385|Prnd|26434|prion protein dublet	AF165166|Prnd|26434|prion protein dublet	BC025140|Prnd|26434|prion protein dublet
mm9_v1_chr3_-_103546233_103546253	0.00849429	bHLH_family.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chrX_+_155852641_155852717	0.00844243	bHLH_family.p2	AK013466|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr1_-_65169708_65169766	0.00840665	bHLH_family.p2	AK164708|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	BC137870|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	AK085417|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	NM_175293|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene
mm9_v1_chr3_+_30691948_30691983	0.00840505	bHLH_family.p2	AK013922|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr6_-_124729735_124729744	0.00833277	bHLH_family.p2	NM_013588|Lrrc23|16977|leucine rich repeat containing 23	AK015011|Lrrc23|16977|leucine rich repeat containing 23	BC049601|Lrrc23|16977|leucine rich repeat containing 23
mm9_v1_chr3_-_105804304_105804414	0.00823747	bHLH_family.p2	HM237137|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene	AK006407|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene	NM_029604|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene
mm9_v1_chr15_+_101974616_101974616	0.0082095	bHLH_family.p2	NM_008344|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr16_-_20730598_20730670	0.00774141	bHLH_family.p2	L34169|Thpo|21832|thrombopoietin	NM_001173505|Thpo|21832|thrombopoietin
mm9_v1_chr2_-_164630347_164630363	0.0075214	bHLH_family.p2	AK033724|Acot8|170789|acyl-CoA thioesterase 8	BC005792|Acot8|170789|acyl-CoA thioesterase 8	AK151924|Acot8|170789|acyl-CoA thioesterase 8
mm9_v1_chr9_-_109986879_109987026	0.00751567	bHLH_family.p2	AK193613|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr6_-_147212606_147212654	0.00737458	bHLH_family.p2	NM_008970|Pthlh|19227|parathyroid hormone-like peptide
mm9_v1_chr12_-_40764554_40764600	0.00735421	bHLH_family.p2	NM_001039515|Arl4a|11861|ADP-ribosylation factor-like 4A	AK161281|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr17_+_21520684_21520739	0.00730685	bHLH_family.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr4_+_111087610_111087629	0.00703806	bHLH_family.p2	AK075885|Bend5|67621|BEN domain containing 5	NM_026279|Bend5|67621|BEN domain containing 5	AK014057|Bend5|67621|BEN domain containing 5
mm9_v1_chr8_-_112486020_112486104	0.00701277	bHLH_family.p2	AK007346|Marveld3|73608|MARVEL (membrane-associating) domain containing 3	BC025851|Marveld3|73608|MARVEL (membrane-associating) domain containing 3	NM_028584|Marveld3|73608|MARVEL (membrane-associating) domain containing 3	NM_212447|Marveld3|73608|MARVEL (membrane-associating) domain containing 3
mm9_v1_chr9_-_107516538_107516684	0.00700857	bHLH_family.p2	
mm9_v1_chr16_+_17070249_17070422	0.00689302	bHLH_family.p2	AK011452|Ypel1|106369|yippee-like 1 (Drosophila)	AK076063|Ypel1|106369|yippee-like 1 (Drosophila)	AK133401|Ypel1|106369|yippee-like 1 (Drosophila)	AF190624|Ypel1|106369|yippee-like 1 (Drosophila)	BC049737|Ypel1|106369|yippee-like 1 (Drosophila)	AK139453|Ypel1|106369|yippee-like 1 (Drosophila)	AK006137|Ypel1|106369|yippee-like 1 (Drosophila)	AK006858|Ypel1|106369|yippee-like 1 (Drosophila)	AK005955|Ypel1|106369|yippee-like 1 (Drosophila)	AK006049|Ypel1|106369|yippee-like 1 (Drosophila)	AK019819|Ypel1|106369|yippee-like 1 (Drosophila)	AK014931|Ypel1|106369|yippee-like 1 (Drosophila)	NM_023249|Ypel1|106369|yippee-like 1 (Drosophila)	AK018910|Ypel1|106369|yippee-like 1 (Drosophila)	AK006505|Ypel1|106369|yippee-like 1 (Drosophila)
mm9_v1_chr1_-_173224861_173224966	0.00673688	bHLH_family.p2	AK011260|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1	AK003070|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1
mm9_v1_chr18_+_39933150_39933172	0.00645725	bHLH_family.p2	AK077154|Pabpc2|18459|poly(A) binding protein, cytoplasmic 2	NM_011033|Pabpc2|18459|poly(A) binding protein, cytoplasmic 2	BC051134|Pabpc2|18459|poly(A) binding protein, cytoplasmic 2	AK131715|Pabpc2|18459|poly(A) binding protein, cytoplasmic 2	X75959|Pabpc2|18459|poly(A) binding protein, cytoplasmic 2
mm9_v1_chr1_-_173275736_173275801	0.00639156	bHLH_family.p2	AK004988|Nit1|27045|nitrilase 1	BC021634|Nit1|27045|nitrilase 1	AF069988|Nit1|27045|nitrilase 1	AK002269|Nit1|27045|nitrilase 1	AK032189|Nit1|27045|nitrilase 1	NM_012049|Nit1|27045|nitrilase 1
mm9_v1_chr7_+_22617369_22617369	0.0060656	bHLH_family.p2	NM_001166747|Vmn1r135|667404|vomeronasal 1 receptor 135	NM_001166755|Vmn1r163|667586|vomeronasal 1 receptor 163
mm9_v1_chr2_+_58607580_58607600	0.00590186	bHLH_family.p2	AY152393|Upp2|76654|uridine phosphorylase 2	NM_029692|Upp2|76654|uridine phosphorylase 2	AK149444|Upp2|76654|uridine phosphorylase 2
mm9_v1_chr8_+_69035638_69035658	0.00587135	bHLH_family.p2	NM_028927|Tktl2|74419|transketolase-like 2	AK016603|Tktl2|74419|transketolase-like 2	AK029871|Tktl2|74419|transketolase-like 2	BC132110|Tktl2|74419|transketolase-like 2	BC132298|Tktl2|74419|transketolase-like 2
mm9_v1_chr2_+_24935818_24936028	0.00554207	bHLH_family.p2	BC031143|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	NM_028093|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AY364442|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AK008590|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8
mm9_v1_chr9_+_107877887_107877985	0.00545914	bHLH_family.p2	AK054410|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK089235|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK004894|Uba7|74153|ubiquitin-like modifier activating enzyme 7	NM_023738|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK170644|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK170421|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK089256|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK172467|Uba7|74153|ubiquitin-like modifier activating enzyme 7	BC138843|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK129009|Uba7|74153|ubiquitin-like modifier activating enzyme 7
mm9_v1_chr12_+_106801381_106801438	0.00504435	bHLH_family.p2	NM_009747|Bdkrb2|12062|bradykinin receptor, beta 2	X78438|Bdkrb2|12062|bradykinin receptor, beta 2	X69682|Bdkrb2|12062|bradykinin receptor, beta 2	AK132469|Bdkrb2|12062|bradykinin receptor, beta 2	BC137755|Bdkrb2|12062|bradykinin receptor, beta 2	BC137756|Bdkrb2|12062|bradykinin receptor, beta 2
mm9_v1_chr12_+_81216835_81216867	0.00495042	bHLH_family.p2	AK040614|1300014J16Rik|74160|RIKEN cDNA 1300014J16 gene	AK005005|1300014J16Rik|74160|RIKEN cDNA 1300014J16 gene
mm9_v1_chr7_-_26601526_26601576	0.00481608	bHLH_family.p2	AK087069|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	AK004699|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	NM_028775|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	BC064733|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	AK054324|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1
mm9_v1_chr1_-_82583400_82583423	0.00476654	bHLH_family.p2	AK164732|Col4a4|12829|collagen, type IV, alpha 4	NM_007735|Col4a4|12829|collagen, type IV, alpha 4
mm9_v1_chrY_+_1855008_1855008	0.00432745	bHLH_family.p2	EU315689|Gm6026|547210|predicted gene 6026	NM_001113395|Gm16501|100042840|predicted gene 16501	NM_001177569|Gm6026|547210|predicted gene 6026
mm9_v1_chr11_-_68740550_68740582	0.0040797	bHLH_family.p2	AB074438|Odf4|252868|outer dense fiber of sperm tails 4	BC060992|Odf4|252868|outer dense fiber of sperm tails 4	NM_145746|Odf4|252868|outer dense fiber of sperm tails 4
mm9_v1_chr11_-_58996318_58996331	0.00403498	bHLH_family.p2	AK046421|Gjc2|118454|gap junction protein, gamma 2	NM_175452|Gjc2|118454|gap junction protein, gamma 2
mm9_v1_chr6_-_52177368_52177368	0.00383823	bHLH_family.p2	AB005457|Hoxa9|15405|homeobox A9	NM_010456|Hoxa9|15405|homeobox A9
mm9_v1_chr18_+_60685866_60685974	0.00381106	bHLH_family.p2	AK162552|Dctn4|67665|dynactin 4	AK168484|Dctn4|67665|dynactin 4	AK160813|Dctn4|67665|dynactin 4	AK050896|Dctn4|67665|dynactin 4	AK019382|Dctn4|67665|dynactin 4	BC034725|Dctn4|67665|dynactin 4	NM_026302|Dctn4|67665|dynactin 4	AK141855|Dctn4|67665|dynactin 4	AK003238|Dctn4|67665|dynactin 4	AK089264|Dctn4|67665|dynactin 4	BC006677|Dctn4|67665|dynactin 4	AK177969|Dctn4|67665|dynactin 4	AK197489|Dctn4|67665|dynactin 4
mm9_v1_chr11_-_110029368_110029491	0.00355924	bHLH_family.p2	AK028451|Abca9|217262|ATP-binding cassette, sub-family A (ABC1), member 9	AK085555|Abca9|217262|ATP-binding cassette, sub-family A (ABC1), member 9	AF491299|Abca9|217262|ATP-binding cassette, sub-family A (ABC1), member 9	NM_147220|Abca9|217262|ATP-binding cassette, sub-family A (ABC1), member 9
mm9_v1_chr16_+_33062606_33062616	0.00330241	bHLH_family.p2	AK030463|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC111899|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC112428|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	NM_172823|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)
mm9_v1_chr6_-_56851861_56851881	0.00325826	bHLH_family.p2	BC038029|Nt5c3|107569|5'-nucleotidase, cytosolic III	AK160139|Nt5c3|107569|5'-nucleotidase, cytosolic III
mm9_v1_chr6_+_129462572_129462636	0.00308746	bHLH_family.p2	AK085389|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene	NM_001081186|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene	AK085571|D630042F21Rik|330428|RIKEN cDNA D630042F21 gene
mm9_v1_chr15_-_77473707_77473715	0.00307478	bHLH_family.p2	AY662646|Apol11b|328563|apolipoprotein L 11b	AK039744|Apol11b|328563|apolipoprotein L 11b	NM_001143686|Apol11b|328563|apolipoprotein L 11b
mm9_v1_chr10_+_80318009_80318081	0.00271309	bHLH_family.p2	AK046804|3110056O03Rik|73218|RIKEN cDNA 3110056O03 gene	NM_175195|3110056O03Rik|73218|RIKEN cDNA 3110056O03 gene	AK148109|3110056O03Rik|73218|RIKEN cDNA 3110056O03 gene	AK170375|3110056O03Rik|73218|RIKEN cDNA 3110056O03 gene	AK166364|3110056O03Rik|73218|RIKEN cDNA 3110056O03 gene	AK157906|3110056O03Rik|73218|RIKEN cDNA 3110056O03 gene
mm9_v1_chrX_+_34847000_34847131	0.00267652	bHLH_family.p2	AJ972666|Rhox4b|57737|reproductive homeobox 4B	NM_021300|Rhox4b|57737|reproductive homeobox 4B	AF265350|Rhox4b|57737|reproductive homeobox 4B	BC172126|Rhox4b|57737|reproductive homeobox 4B	BC172128|Rhox4e|194856|reproductive homeobox 4E	AB221641|Rhox4d|664610|reproductive homeobox 4D
mm9_v1_chr14_+_65885454_65885579	0.00256208	bHLH_family.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr10_-_120851345_120851478	0.00245269	bHLH_family.p2	AK196922|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chrX_+_70656434_70656441	0.00208454	bHLH_family.p2	U47104|Zfp92|22754|zinc finger protein 92	AK141522|Zfp92|22754|zinc finger protein 92	NM_009566|Zfp92|22754|zinc finger protein 92
mm9_v1_chr14_-_11285927_11285966	0.00205546	bHLH_family.p2	BC012662|Fhit|14198|fragile histidine triad gene
mm9_v1_chr1_-_163181251_163181302	0.00200089	bHLH_family.p2	BC013489|Prdx6|11758|peroxiredoxin 6	AK172888|Prdx6|11758|peroxiredoxin 6	AF004670|Prdx6|11758|peroxiredoxin 6	AK168223|Prdx6|11758|peroxiredoxin 6	AK076191|Prdx6|11758|peroxiredoxin 6	AK035097|Prdx6|11758|peroxiredoxin 6	AK081980|Prdx6|11758|peroxiredoxin 6	AF093852|Prdx6|11758|peroxiredoxin 6	AK030413|Prdx6|11758|peroxiredoxin 6	AK161710|Prdx6|11758|peroxiredoxin 6	BC061181|Prdx6|11758|peroxiredoxin 6	NM_007453|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr9_-_21043246_21043275	0.0017337	bHLH_family.p2	AK129061|Keap1|50868|kelch-like ECH-associated protein 1	BC055732|Keap1|50868|kelch-like ECH-associated protein 1	AK076234|Keap1|50868|kelch-like ECH-associated protein 1	AK083593|Keap1|50868|kelch-like ECH-associated protein 1	AK150485|Keap1|50868|kelch-like ECH-associated protein 1	AK159858|Keap1|50868|kelch-like ECH-associated protein 1	AK142272|Keap1|50868|kelch-like ECH-associated protein 1	BC006729|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr6_+_48794000_48794090	0.00163368	bHLH_family.p2	AK180847|Tmem176a|66058|transmembrane protein 176A
mm9_v1_chr2_+_127250916_127250939	0.00159326	bHLH_family.p2	AB259571|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	AK131154|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	NM_001081089|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	BC113165|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial	BC113776|Gpat2|215456|glycerol-3-phosphate acyltransferase 2, mitochondrial
mm9_v1_chr9_+_88475873_88475994	0.0015766	bHLH_family.p2	AK145647|Trim43a|547109|tripartite motif-containing 43A	NM_001034906|Trim43a|547109|tripartite motif-containing 43A	AK166678|Trim43a|547109|tripartite motif-containing 43A	BC141236|Trim43a|547109|tripartite motif-containing 43A
mm9_v1_chr13_-_55932612_55932616	0.000972221	bHLH_family.p2	AK142455|Pitx1|18740|paired-like homeodomain transcription factor 1
mm9_v1_chr6_+_70321430_70321482	0.000718487	bHLH_family.p2	
mm9_v1_chr5_+_136514548_136514570	0.000609378	bHLH_family.p2	AK157647|Upk3b|100647|uroplakin 3B	AY233463|Upk3b|100647|uroplakin 3B	BC061224|Upk3b|100647|uroplakin 3B	AK042067|Upk3b|100647|uroplakin 3B
mm9_v1_chr11_-_69011310_69011344	0.00059929	bHLH_family.p2	U93277|Alox8|11688|arachidonate 8-lipoxygenase	Y14696|Alox8|11688|arachidonate 8-lipoxygenase	AK028724|Alox8|11688|arachidonate 8-lipoxygenase	NM_009661|Alox8|11688|arachidonate 8-lipoxygenase	BC015253|Alox8|11688|arachidonate 8-lipoxygenase
mm9_v1_chr16_+_37580238_37580255	0.000539656	bHLH_family.p2	NM_013547|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr7_-_140913846_140914017	0.000526113	bHLH_family.p2	BC024885|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm9_v1_chr11_-_51398152_51398172	0.000300449	bHLH_family.p2	
mm9_v1_chr9_-_96978102_96978110	9.72021e-05	bHLH_family.p2	AK087750|Slc25a36|192287|solute carrier family 25, member 36
