Project

Illumina Body Map 2: averaged replicates

Navigation
Downloads

Results for GCCUGUC

Z-value: 0.31

Motif logo

miRNA associated with seed GCCUGUC

NamemiRBASE accession
MIMAT0004564

Activity profile of GCCUGUC motif

Sorted Z-values of GCCUGUC motif

Promoter Log-likelihood Transcript Gene Gene Info
chr7_-_19157248 0.38 ENST00000242261.5
twist family bHLH transcription factor 1
chr11_+_76494253 0.29 ENST00000333090.4
tsukushi, small leucine rich proteoglycan
chr2_-_19558373 0.29 ENST00000272223.2
odd-skipped related transciption factor 1
chr2_-_217560248 0.25 ENST00000233813.4
insulin-like growth factor binding protein 5
chr6_-_39197226 0.24 ENST00000359534.3
potassium channel, subfamily K, member 5
chr4_+_55095264 0.23 ENST00000257290.5
platelet-derived growth factor receptor, alpha polypeptide
chr1_+_39957292 0.22 ENST00000331593.5
bone morphogenetic protein 8a
chrX_+_99839799 0.20 ENST00000373031.4
tenomodulin
chr6_+_21593972 0.18 ENST00000244745.1
ENST00000543472.1
SRY (sex determining region Y)-box 4
chr3_+_37493610 0.17 ENST00000264741.5
integrin, alpha 9
chr7_-_27239703 0.14 ENST00000222753.4
homeobox A13
chr20_-_10654639 0.14 ENST00000254958.5
jagged 1
chr5_-_146833485 0.14 ENST00000398514.3
dihydropyrimidinase-like 3
chr10_-_71892555 0.14 ENST00000307864.1
apoptosis-inducing factor, mitochondrion-associated, 2
chr10_-_118032697 0.14 ENST00000439649.3
GDNF family receptor alpha 1
chr10_+_99473455 0.14 ENST00000285605.6
MARVEL domain containing 1
chr14_-_61116168 0.13 ENST00000247182.6
SIX homeobox 1
chr13_+_73632897 0.12 ENST00000377687.4
Kruppel-like factor 5 (intestinal)
chr1_+_210406121 0.11 ENST00000367012.3
SERTA domain containing 4
chr14_-_24898731 0.11 ENST00000267406.6
cerebellin 3 precursor
chr12_-_56652111 0.10 ENST00000267116.7
ankyrin repeat domain 52
chr22_-_50746027 0.10 ENST00000425954.1
ENST00000449103.1
plexin B2
chr2_-_42991257 0.10 ENST00000378661.2
oxoeicosanoid (OXE) receptor 1
chr11_+_118754475 0.08 ENST00000292174.4
chemokine (C-X-C motif) receptor 5
chr1_+_180199393 0.07 ENST00000263726.2
LIM homeobox 4
chr11_-_57283159 0.07 ENST00000533263.1
ENST00000278426.3
solute carrier family 43 (amino acid system L transporter), member 1
chr6_+_44187242 0.07 ENST00000393844.1
solute carrier family 29 (equilibrative nucleoside transporter), member 1
chr5_-_137090028 0.07 ENST00000314940.4
heterogeneous nuclear ribonucleoprotein A0
chr20_-_23030296 0.07 ENST00000377103.2
thrombomodulin
chr9_-_127533519 0.07 ENST00000487099.2
ENST00000344523.4
ENST00000373584.3
nuclear receptor subfamily 6, group A, member 1
chr16_+_29789561 0.07 ENST00000400752.4
zymogen granule protein 16
chr8_-_103668114 0.07 ENST00000285407.6
Kruppel-like factor 10
chr19_-_15560730 0.06 ENST00000389282.4
ENST00000263381.7
widely interspaced zinc finger motifs
chr1_-_203055129 0.06 ENST00000241651.4
myogenin (myogenic factor 4)
chr2_-_114036488 0.06 ENST00000263335.7
ENST00000397647.3
ENST00000348715.5
ENST00000429538.3
paired box 8
chr13_+_114238997 0.06 ENST00000538138.1
ENST00000375370.5
transcription factor Dp-1
chr15_-_89456593 0.06 ENST00000558029.1
ENST00000539437.1
ENST00000542878.1
ENST00000268151.7
ENST00000566497.1
milk fat globule-EGF factor 8 protein
chr2_-_97535708 0.06 ENST00000305476.5
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
chr3_-_197686847 0.05 ENST00000265239.6
IQ motif containing G
chr6_+_17281573 0.05 ENST00000379052.5
RNA binding motif protein 24
chr2_+_36582857 0.05 ENST00000280527.2
cysteine rich transmembrane BMP regulator 1 (chordin-like)
chr15_-_65715401 0.05 ENST00000352385.2
immunoglobulin superfamily, DCC subclass, member 4
chr2_+_25015968 0.05 ENST00000380834.2
ENST00000473706.1
centromere protein O
chr17_-_72919317 0.05 ENST00000319642.1
Usher syndrome 1G (autosomal recessive)
chr19_+_39616410 0.04 ENST00000602004.1
ENST00000599470.1
ENST00000321944.4
ENST00000593480.1
ENST00000358301.3
ENST00000593690.1
ENST00000599386.1
p21 protein (Cdc42/Rac)-activated kinase 4
chr20_-_36889127 0.04 ENST00000279024.4
KIAA1755
chr4_-_39460520 0.04 ENST00000503040.1
ENST00000504470.1
ENST00000508595.1
ENST00000295955.9
ribosomal protein L9
chr17_-_61523535 0.04 ENST00000584031.1
ENST00000392976.1
cytochrome b561
chr3_+_152017181 0.04 ENST00000498502.1
ENST00000324196.5
ENST00000545754.1
ENST00000357472.3
muscleblind-like splicing regulator 1
chr15_-_50558223 0.04 ENST00000267845.3
histidine decarboxylase
chr12_-_54673871 0.04 ENST00000209875.4
chromobox homolog 5
chr15_-_41408409 0.04 ENST00000361937.3
INO80 complex subunit
chr11_+_14665263 0.04 ENST00000282096.4
phosphodiesterase 3B, cGMP-inhibited
chr19_+_30433110 0.03 ENST00000542441.2
ENST00000392271.1
URI1, prefoldin-like chaperone
chr1_-_23857698 0.03 ENST00000361729.2
E2F transcription factor 2
chr14_-_76127519 0.03 ENST00000256319.6
chromosome 14 open reading frame 1
chr3_+_3841108 0.03 ENST00000319331.3
leucine rich repeat neuronal 1
chrX_-_107979616 0.03 ENST00000372129.2
insulin receptor substrate 4
chr12_-_121342170 0.03 ENST00000353487.2
signal peptide peptidase like 3
chr1_-_244013384 0.03 ENST00000366539.1
v-akt murine thymoma viral oncogene homolog 3
chr19_+_1752372 0.03 ENST00000382349.4
one cut homeobox 3
chr11_-_118305921 0.03 ENST00000532619.1
RP11-770J1.4
chr18_-_18691739 0.03 ENST00000399799.2
Rho-associated, coiled-coil containing protein kinase 1
chrX_+_53078273 0.03 ENST00000332582.4
G protein-coupled receptor 173
chr17_+_2240775 0.03 ENST00000268989.3
ENST00000426855.2
small G protein signaling modulator 2
chr5_-_66492562 0.03 ENST00000256447.4
CD180 molecule
chr11_-_62572901 0.02 ENST00000439713.2
ENST00000531131.1
ENST00000530875.1
ENST00000531709.2
ENST00000294172.2
nuclear RNA export factor 1
chr4_+_87856129 0.02 ENST00000395146.4
ENST00000507468.1
AF4/FMR2 family, member 1
chr2_-_220025548 0.02 ENST00000356853.5
nonhomologous end-joining factor 1
chr16_+_54964740 0.02 ENST00000394636.4
iroquois homeobox 5
chr3_-_196756646 0.02 ENST00000439320.1
ENST00000296351.4
ENST00000296350.5
antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
chr3_+_113775576 0.02 ENST00000485050.1
ENST00000281273.4
queuine tRNA-ribosyltransferase domain containing 1
chr14_-_77787198 0.02 ENST00000261534.4
protein-O-mannosyltransferase 2
chr4_+_128703295 0.02 ENST00000296464.4
ENST00000508549.1
heat shock 70kDa protein 4-like
chr16_-_85722530 0.02 ENST00000253462.3
GINS complex subunit 2 (Psf2 homolog)
chr9_-_74980113 0.02 ENST00000376962.5
ENST00000376960.4
ENST00000237937.3
zinc finger, AN1-type domain 5
chr7_-_130080977 0.01 ENST00000223208.5
centrosomal protein 41kDa
chr6_+_4021554 0.01 ENST00000337659.6
pre-mRNA processing factor 4B
chr1_+_36348790 0.01 ENST00000373204.4
argonaute RISC catalytic component 1
chr9_-_117568365 0.01 ENST00000374045.4
tumor necrosis factor (ligand) superfamily, member 15
chrX_-_71351678 0.01 ENST00000609883.1
ENST00000545866.1
retrotransposon gag domain containing 4
chr22_+_30279144 0.01 ENST00000401950.2
ENST00000333027.3
ENST00000445401.1
ENST00000323630.5
ENST00000351488.3
myotubularin related protein 3
chr4_+_699537 0.01 ENST00000419774.1
ENST00000362003.5
ENST00000400151.2
ENST00000427463.1
ENST00000470161.2
polycomb group ring finger 3
chr5_+_167718604 0.01 ENST00000265293.4
WW and C2 domain containing 1
chrX_-_19002696 0.01 ENST00000379942.4
phosphorylase kinase, alpha 2 (liver)
chr3_-_50649192 0.00 ENST00000443053.2
ENST00000348721.3
cytokine inducible SH2-containing protein
chr17_-_39890893 0.00 ENST00000393939.2
ENST00000347901.4
ENST00000341193.5
ENST00000310778.5
huntingtin-associated protein 1
chrX_+_117861535 0.00 ENST00000371666.3
ENST00000371642.1
interleukin 13 receptor, alpha 1
chr2_+_201676256 0.00 ENST00000452206.1
ENST00000410110.2
ENST00000409600.1
basic leucine zipper and W2 domains 1
chr2_-_211036051 0.00 ENST00000418791.1
ENST00000452086.1
ENST00000281772.9
KAT8 regulatory NSL complex subunit 1-like
chr1_+_145524891 0.00 ENST00000369304.3
integrin, alpha 10
chr7_-_127983877 0.00 ENST00000415472.2
ENST00000478061.1
ENST00000223073.2
ENST00000459726.1
RNA binding motif protein 28

Network of associatons between targets according to the STRING database.

First level regulatory network of GCCUGUC

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:2000276 negative regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035359) negative regulation of oxidative phosphorylation uncoupler activity(GO:2000276)
0.1 0.4 GO:0061073 ciliary body morphogenesis(GO:0061073)
0.1 0.3 GO:1904204 regulation of skeletal muscle hypertrophy(GO:1904204)
0.1 0.3 GO:0023016 osmosensory signaling pathway(GO:0007231) signal transduction by trans-phosphorylation(GO:0023016) kidney smooth muscle tissue development(GO:0072194) pattern specification involved in metanephros development(GO:0072268)
0.1 0.1 GO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development(GO:2000729)
0.0 0.2 GO:0035910 N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.2 GO:0035790 platelet-derived growth factor receptor-alpha signaling pathway(GO:0035790)
0.0 0.2 GO:0035992 tendon cell differentiation(GO:0035990) tendon formation(GO:0035992)
0.0 0.1 GO:0021526 medial motor column neuron differentiation(GO:0021526)
0.0 0.2 GO:0002024 diet induced thermogenesis(GO:0002024)
0.0 0.1 GO:2000612 thyroid-stimulating hormone secretion(GO:0070460) regulation of thyroid-stimulating hormone secretion(GO:2000612)
0.0 0.1 GO:0014735 regulation of muscle atrophy(GO:0014735)
0.0 0.1 GO:0015862 uridine transport(GO:0015862)
0.0 0.0 GO:0001694 histamine biosynthetic process(GO:0001694)
0.0 0.1 GO:0032534 regulation of microvillus assembly(GO:0032534)
0.0 0.2 GO:0030322 stabilization of membrane potential(GO:0030322)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0042567 insulin-like growth factor ternary complex(GO:0042567)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0005018 platelet-derived growth factor alpha-receptor activity(GO:0005018)
0.0 0.1 GO:0004174 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.0 0.0 GO:0005010 insulin-like growth factor-activated receptor activity(GO:0005010)
0.0 0.1 GO:0070984 SET domain binding(GO:0070984)
0.0 0.3 GO:0031995 insulin-like growth factor II binding(GO:0031995)
0.0 0.1 GO:0016167 glial cell-derived neurotrophic factor receptor activity(GO:0016167)
0.0 0.2 GO:0070700 BMP receptor binding(GO:0070700)
0.0 0.0 GO:0004119 cGMP-inhibited cyclic-nucleotide phosphodiesterase activity(GO:0004119)
0.0 0.0 GO:0022865 transmembrane electron transfer carrier(GO:0022865)
0.0 0.2 GO:0022841 potassium ion leak channel activity(GO:0022841)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor