hg19_v2_chr12_-_31479045_31479074	15.6776	ACAGUAU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr2_+_172778952_172779004	15.276	ACAGUAU	ENST00000392584.1|HAT1|ENSG00000128708.8|histone acetyltransferase 1 	ENST00000264108.4|HAT1|ENSG00000128708.8|histone acetyltransferase 1
hg19_v2_chr20_-_32891151_32891168	13.5053	ACAGUAU	ENST00000217426.2|AHCY|ENSG00000101444.8|adenosylhomocysteinase
hg19_v2_chr5_+_52776228_52776245	11.8852	ACAGUAU	ENST00000256759.3|FST|ENSG00000134363.7|follistatin
hg19_v2_chr12_-_15942309_15942330	11.0661	ACAGUAU	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr1_-_95392635_95392834	11.0232	ACAGUAU	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr5_+_65440032_65440099	10.9529	ACAGUAU	ENST00000334121.6|SREK1|ENSG00000153914.11|splicing regulatory glutamine/lysine-rich protein 1
hg19_v2_chr2_+_201676256_201676323	10.0096	ACAGUAU	ENST00000452206.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000410110.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000409600.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr9_-_117880477_117880536	9.82113	ACAGUAU	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr6_+_13615554_13615601	9.71266	ACAGUAU	ENST00000451315.2|NOL7|ENSG00000225921.2|nucleolar protein 7, 27kDa
hg19_v2_chr2_-_227664474_227664508	8.75596	ACAGUAU	ENST00000305123.5|IRS1|ENSG00000169047.5|insulin receptor substrate 1
hg19_v2_chr3_-_195808952_195808972	8.72903	ACAGUAU	ENST00000540528.1|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000392396.3|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000535031.1|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000420415.1|TFRC|ENSG00000072274.8|transferrin receptor
hg19_v2_chr1_+_165796753_165796776	8.51354	ACAGUAU	ENST00000367879.4|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr18_+_3451646_3451722	8.50783	ACAGUAU	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr17_-_4269768_4269835	8.47292	ACAGUAU	ENST00000396981.2|UBE2G1|ENSG00000132388.8|ubiquitin-conjugating enzyme E2G 1
hg19_v2_chr1_+_113161778_113161820	8.41888	ACAGUAU	ENST00000263168.3|CAPZA1|ENSG00000116489.8|capping protein (actin filament) muscle Z-line, alpha 1
hg19_v2_chr15_+_52311398_52311461	7.91687	ACAGUAU	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr6_-_86352642_86352709	7.82213	ACAGUAU	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr1_+_26798955_26799010	7.63164	ACAGUAU	ENST00000361427.5|HMGN2|ENSG00000198830.6|high mobility group nucleosomal binding domain 2
hg19_v2_chr15_+_39873268_39873294	7.29991	ACAGUAU	ENST00000397591.2|THBS1|ENSG00000137801.9|thrombospondin 1 	ENST00000260356.5|THBS1|ENSG00000137801.9|thrombospondin 1
hg19_v2_chr3_+_30648066_30648167	6.93249	ACAGUAU	ENST00000359013.4|TGFBR2|ENSG00000163513.13|transforming growth factor, beta receptor II (70/80kDa)
hg19_v2_chr15_-_49447835_49447858	6.89377	ACAGUAU	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr10_+_89622870_89622870	6.67148	ACAGUAU	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr5_-_127873659_127873735	6.52925	ACAGUAU	ENST00000262464.4|FBN2|ENSG00000138829.6|fibrillin 2
hg19_v2_chrX_-_108976521_108976632	6.51106	ACAGUAU	ENST00000469796.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000502391.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000508092.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000340800.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000348502.6|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr6_+_64281906_64281922	6.31229	ACAGUAU	ENST00000370651.3|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr1_-_225840747_225840860	6.18216	ACAGUAU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr3_+_107241783_107241850	6.14332	ACAGUAU	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr17_-_38574169_38574202	5.84635	ACAGUAU	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr3_+_152017181_152017229	5.64662	ACAGUAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr1_-_78148324_78148365	5.53419	ACAGUAU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr2_-_178128528_178128574	5.5019	ACAGUAU	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr4_-_139163491_139163510	5.46076	ACAGUAU	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr10_+_5454505_5454540	5.41227	ACAGUAU	ENST00000355029.4|NET1|ENSG00000173848.14|neuroepithelial cell transforming 1
hg19_v2_chr10_-_79686284_79686527	5.39806	ACAGUAU	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chrX_-_109561294_109561467	5.37889	ACAGUAU	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr11_-_27494279_27494308	5.3771	ACAGUAU	ENST00000379214.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr7_+_116139424_116139444	5.19672	ACAGUAU	ENST00000222693.4|CAV2|ENSG00000105971.10|caveolin 2
hg19_v2_chr15_-_48470558_48470714	5.1673	ACAGUAU	ENST00000324324.7|MYEF2|ENSG00000104177.13|myelin expression factor 2
hg19_v2_chr2_+_46926048_46926095	5.11307	ACAGUAU	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr16_-_12009735_12009793	5.11224	ACAGUAU	ENST00000439887.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1 	ENST00000434724.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1
hg19_v2_chr18_-_18691739_18691812	4.98639	ACAGUAU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr2_-_37899323_37899374	4.94513	ACAGUAU	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr2_+_198365122_198365137	4.93976	ACAGUAU	ENST00000604458.1|HSPE1-MOB4|ENSG00000270757.1|HSPE1-MOB4 readthrough
hg19_v2_chrX_-_41782249_41782287	4.93201	ACAGUAU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr1_+_955448_955508	4.82708	ACAGUAU	ENST00000379370.2|AGRN|ENSG00000188157.9|agrin
hg19_v2_chr7_-_27213893_27213954	4.7456	ACAGUAU	ENST00000283921.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr11_+_92085262_92085262	4.68353	ACAGUAU	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr8_+_98881268_98881382	4.66278	ACAGUAU	ENST00000254898.5|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000524308.1|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000522025.2|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr5_+_177631497_177631508	4.61776	ACAGUAU	ENST00000358344.3|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B
hg19_v2_chr3_-_124774802_124774852	4.49348	ACAGUAU	ENST00000311127.4|HEG1|ENSG00000173706.8|heart development protein with EGF-like domains 1
hg19_v2_chr6_+_114178512_114178586	4.43798	ACAGUAU	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr16_-_65155833_65155976	4.37416	ACAGUAU	ENST00000566827.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000394156.3|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000562998.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast)
hg19_v2_chrX_-_99891796_99891811	4.31882	ACAGUAU	ENST00000373020.4|TSPAN6|ENSG00000000003.10|tetraspanin 6
hg19_v2_chr10_+_95256356_95256408	4.2825	ACAGUAU	ENST00000371485.3|CEP55|ENSG00000138180.11|centrosomal protein 55kDa
hg19_v2_chr5_-_38595498_38595514	4.25741	ACAGUAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr16_-_47177874_47177922	4.11098	ACAGUAU	ENST00000562435.1|NETO2|ENSG00000171208.5|neuropilin (NRP) and tolloid (TLL)-like 2
hg19_v2_chr1_+_93811438_93811548	4.05015	ACAGUAU	ENST00000370272.4|DR1|ENSG00000117505.8|down-regulator of transcription 1, TBP-binding (negative cofactor 2) 	ENST00000370267.1|DR1|ENSG00000117505.8|down-regulator of transcription 1, TBP-binding (negative cofactor 2)
hg19_v2_chr1_-_225615599_225615802	4.01847	ACAGUAU	ENST00000421383.1|LBR|ENSG00000143815.10|lamin B receptor 	ENST00000272163.4|LBR|ENSG00000143815.10|lamin B receptor
hg19_v2_chr20_+_61427797_61427863	3.95722	ACAGUAU	ENST00000370487.3|MRGBP|ENSG00000101189.5|MRG/MORF4L binding protein
hg19_v2_chr12_-_76425368_76425384	3.91315	ACAGUAU	ENST00000602540.1|PHLDA1|ENSG00000139289.9|pleckstrin homology-like domain, family A, member 1
hg19_v2_chr12_+_69004619_69004699	3.84898	ACAGUAU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr6_-_99797522_99797572	3.75833	ACAGUAU	ENST00000389677.5|FAXC|ENSG00000146267.11|failed axon connections homolog (Drosophila)
hg19_v2_chr3_-_98620500_98620547	3.72668	ACAGUAU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr3_+_69812877_69812962	3.65861	ACAGUAU	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr9_+_112810878_112810985	3.64287	ACAGUAU	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr8_-_57123815_57123867	3.58692	ACAGUAU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr6_-_24721054_24721074	3.55422	ACAGUAU	ENST00000378119.4|C6orf62|ENSG00000112308.8|chromosome 6 open reading frame 62
hg19_v2_chr12_+_104359576_104359601	3.53553	ACAGUAU	ENST00000392872.3|TDG|ENSG00000139372.10|thymine-DNA glycosylase 	ENST00000436021.2|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr6_+_160390102_160390147	3.52921	ACAGUAU	ENST00000356956.1|IGF2R|ENSG00000197081.8|insulin-like growth factor 2 receptor
hg19_v2_chr15_-_48937982_48938046	3.44427	ACAGUAU	ENST00000316623.5|FBN1|ENSG00000166147.9|fibrillin 1
hg19_v2_chr17_+_1733276_1733321	3.42767	ACAGUAU	ENST00000254719.5|RPA1|ENSG00000132383.7|replication protein A1, 70kDa
hg19_v2_chr11_+_9685604_9685706	3.37251	ACAGUAU	ENST00000447399.2|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit 	ENST00000318950.6|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit
hg19_v2_chr20_+_19867150_19867175	3.32816	ACAGUAU	ENST00000255006.6|RIN2|ENSG00000132669.8|Ras and Rab interactor 2
hg19_v2_chr14_+_23776024_23776105	3.315	ACAGUAU	ENST00000553781.1|BCL2L2-PABPN1|ENSG00000258643.1|BCL2L2-PABPN1 readthrough 	ENST00000556100.1|BCL2L2-PABPN1|ENSG00000258643.1|BCL2L2-PABPN1 readthrough 	ENST00000557236.1|BCL2L2|ENSG00000129473.5|BCL2-like 2 	ENST00000557579.1|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr9_+_2621798_2621834	3.29874	ACAGUAU	ENST00000382100.3|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr12_+_67663056_67663067	3.26982	ACAGUAU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr15_-_37390482_37390572	3.18082	ACAGUAU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr8_-_41166953_41167016	3.15088	ACAGUAU	ENST00000220772.3|SFRP1|ENSG00000104332.7|secreted frizzled-related protein 1
hg19_v2_chr8_+_26149007_26149061	3.1043	ACAGUAU	ENST00000380737.3|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000524169.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr4_-_103748880_103749047	3.04228	ACAGUAU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr9_+_112542572_112542590	3.04154	ACAGUAU	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr7_+_115850547_115850626	3.02478	ACAGUAU	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr20_-_48729670_48729694	3.0192	ACAGUAU	ENST00000371657.5|UBE2V1|ENSG00000244687.7|ubiquitin-conjugating enzyme E2 variant 1
hg19_v2_chr15_+_77223960_77223994	3.0168	ACAGUAU	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr18_+_8717369_8717384	2.98551	ACAGUAU	ENST00000359865.3|SOGA2|ENSG00000168502.13|SOGA family member 2 	ENST00000400050.3|SOGA2|ENSG00000168502.13|SOGA family member 2 	ENST00000306285.7|SOGA2|ENSG00000168502.13|SOGA family member 2
hg19_v2_chr2_-_65357225_65357267	2.98097	ACAGUAU	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr3_+_51575596_51575596	2.97679	ACAGUAU	ENST00000409535.2|RAD54L2|ENSG00000164080.9|RAD54-like 2 (S. cerevisiae)
hg19_v2_chr12_+_50135588_50135605	2.97231	ACAGUAU	ENST00000423828.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6 	ENST00000550445.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr5_+_82767284_82767310	2.97077	ACAGUAU	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr20_-_48770174_48770243	2.95688	ACAGUAU	ENST00000341698.2|TMEM189-UBE2V1|ENSG00000124208.16|TMEM189-UBE2V1 readthrough
hg19_v2_chr1_+_110091189_110091268	2.94045	ACAGUAU	ENST00000369851.4|GNAI3|ENSG00000065135.7|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3
hg19_v2_chr14_-_21737610_21737653	2.93923	ACAGUAU	ENST00000320084.7|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000449098.1|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000336053.6|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2)
hg19_v2_chr5_+_86564739_86564791	2.93595	ACAGUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr15_-_56209306_56209344	2.93595	ACAGUAU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr21_-_43346790_43346823	2.90579	ACAGUAU	ENST00000329623.7|C2CD2|ENSG00000157617.12|C2 calcium-dependent domain containing 2
hg19_v2_chr12_+_4430371_4430429	2.8852	ACAGUAU	ENST00000179259.4|C12orf5|ENSG00000078237.4|chromosome 12 open reading frame 5
hg19_v2_chr8_-_68255912_68255952	2.84653	ACAGUAU	ENST00000262215.3|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 	ENST00000519436.1|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
hg19_v2_chr3_-_176914238_176914277	2.80856	ACAGUAU	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr1_+_153606513_153606525	2.76707	ACAGUAU	ENST00000368694.3|CHTOP|ENSG00000160679.8|chromatin target of PRMT1
hg19_v2_chr16_-_10674528_10674555	2.7339	ACAGUAU	ENST00000359543.3|EMP2|ENSG00000213853.5|epithelial membrane protein 2
hg19_v2_chr3_+_130569429_130569479	2.72144	ACAGUAU	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_+_116184566_116184633	2.70778	ACAGUAU	ENST00000355485.2|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1 	ENST00000369510.4|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1
hg19_v2_chr8_+_125486939_125487026	2.67567	ACAGUAU	ENST00000303545.3|RNF139|ENSG00000170881.4|ring finger protein 139
hg19_v2_chr8_-_23712312_23712328	2.63452	ACAGUAU	ENST00000290271.2|STC1|ENSG00000159167.7|stanniocalcin 1
hg19_v2_chr15_+_96873921_96873946	2.60439	ACAGUAU	ENST00000394166.3|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr2_-_100106419_100106522	2.59001	ACAGUAU	ENST00000393445.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed) 	ENST00000258428.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed)
hg19_v2_chr6_-_82462425_82462491	2.58446	ACAGUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr13_+_26828275_26828312	2.58265	ACAGUAU	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chrX_+_118708493_118708506	2.5679	ACAGUAU	ENST00000371558.2|UBE2A|ENSG00000077721.11|ubiquitin-conjugating enzyme E2A
hg19_v2_chr8_-_67525473_67525518	2.56762	ACAGUAU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr10_+_60272814_60272900	2.51583	ACAGUAU	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr13_-_50367057_50367142	2.48819	ACAGUAU	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chr2_+_85198216_85198305	2.47859	ACAGUAU	ENST00000456682.1|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1 	ENST00000409785.4|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1
hg19_v2_chr3_+_9439400_9439414	2.46625	ACAGUAU	ENST00000450326.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402198.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402466.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr10_-_13390270_13390316	2.46059	ACAGUAU	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr7_+_116312411_116312502	2.44202	ACAGUAU	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr11_-_95657231_95657459	2.40778	ACAGUAU	ENST00000409459.1|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000352297.7|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000393223.3|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000346299.5|MTMR2|ENSG00000087053.14|myotubularin related protein 2
hg19_v2_chr10_-_98346801_98346812	2.40233	ACAGUAU	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr13_-_48575443_48575464	2.38514	ACAGUAU	ENST00000378654.3|SUCLA2|ENSG00000136143.9|succinate-CoA ligase, ADP-forming, beta subunit
hg19_v2_chr7_-_148581251_148581347	2.37796	ACAGUAU	ENST00000478654.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000460911.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000350995.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr3_+_99357319_99357454	2.35861	ACAGUAU	ENST00000452013.1|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000261037.3|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000273342.4|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1
hg19_v2_chr10_-_43903217_43903267	2.35412	ACAGUAU	ENST00000357065.4|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr1_+_39456895_39456986	2.3521	ACAGUAU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr10_-_126849068_126849138	2.34154	ACAGUAU	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr12_+_13349650_13349667	2.3391	ACAGUAU	ENST00000256951.5|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000431267.2|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000542474.1|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000544053.1|EMP1|ENSG00000134531.5|epithelial membrane protein 1
hg19_v2_chr3_-_81811312_81811312	2.32285	ACAGUAU	ENST00000429644.2|GBE1|ENSG00000114480.8|glucan (1,4-alpha-), branching enzyme 1
hg19_v2_chr3_+_105085734_105085760	2.31487	ACAGUAU	ENST00000306107.5|ALCAM|ENSG00000170017.8|activated leukocyte cell adhesion molecule
hg19_v2_chr4_+_146402925_146402957	2.30371	ACAGUAU	ENST00000302085.4|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chrX_-_131352152_131352204	2.29031	ACAGUAU	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr3_+_141106643_141106681	2.27021	ACAGUAU	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr1_-_103574024_103574063	2.26719	ACAGUAU	ENST00000512756.1|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000370096.3|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000358392.2|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000353414.4|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1
hg19_v2_chr8_-_42065187_42065242	2.23124	ACAGUAU	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr16_+_69221028_69221092	2.22515	ACAGUAU	ENST00000336278.4|SNTB2|ENSG00000168807.12|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
hg19_v2_chr12_+_27485823_27485868	2.22405	ACAGUAU	ENST00000395901.2|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2 	ENST00000546179.1|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2
hg19_v2_chr16_-_87525651_87525651	2.22385	ACAGUAU	ENST00000268616.4|ZCCHC14|ENSG00000140948.7|zinc finger, CCHC domain containing 14
hg19_v2_chr2_+_170590321_170590408	2.21553	ACAGUAU	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr4_-_54930790_54930857	2.18874	ACAGUAU	ENST00000263921.3|CHIC2|ENSG00000109220.6|cysteine-rich hydrophobic domain 2
hg19_v2_chr3_-_122233723_122233797	2.18824	ACAGUAU	ENST00000493510.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000344337.6|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000476916.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000465882.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5)
hg19_v2_chr14_-_64010046_64010107	2.1767	ACAGUAU	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr7_-_131241361_131241398	2.13688	ACAGUAU	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr7_-_93633684_93633695	2.11533	ACAGUAU	ENST00000222547.3|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein 	ENST00000425626.1|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein
hg19_v2_chrX_+_40944871_40944888	2.11119	ACAGUAU	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr10_+_63661053_63661079	2.08311	ACAGUAU	ENST00000279873.7|ARID5B|ENSG00000150347.10|AT rich interactive domain 5B (MRF1-like)
hg19_v2_chr2_+_204192942_204193038	2.08159	ACAGUAU	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chr2_+_198380289_198380305	2.07555	ACAGUAU	ENST00000233892.4|MOB4|ENSG00000115540.10|MOB family member 4, phocein 	ENST00000409916.1|MOB4|ENSG00000115540.10|MOB family member 4, phocein
hg19_v2_chr2_+_191273052_191273121	2.065	ACAGUAU	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr10_+_88516396_88516426	2.05958	ACAGUAU	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr10_+_17686124_17686192	2.05231	ACAGUAU	ENST00000377524.3|STAM|ENSG00000136738.10|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
hg19_v2_chrX_-_119694538_119694555	2.04663	ACAGUAU	ENST00000371322.5|CUL4B|ENSG00000158290.12|cullin 4B
hg19_v2_chr1_+_87170247_87170276	2.01634	ACAGUAU	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr9_-_125590818_125590910	2.00237	ACAGUAU	ENST00000259467.4|PDCL|ENSG00000136940.9|phosducin-like
hg19_v2_chr6_-_79944336_79944440	1.98666	ACAGUAU	ENST00000344726.5|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3 	ENST00000275036.7|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3
hg19_v2_chr13_-_107187462_107187462	1.97307	ACAGUAU	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr21_-_27542972_27543138	1.96502	ACAGUAU	ENST00000346798.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000439274.2|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000354192.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000348990.5|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000357903.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000358918.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000359726.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr20_-_47804894_47804912	1.96268	ACAGUAU	ENST00000371828.3|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371856.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000360426.4|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000347458.5|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000340954.7|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371802.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371792.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000437404.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1
hg19_v2_chr15_-_83876758_83876770	1.95848	ACAGUAU	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr18_+_57567180_57567248	1.95844	ACAGUAU	ENST00000316660.6|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1 	ENST00000269518.9|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1
hg19_v2_chr11_+_9406169_9406210	1.95248	ACAGUAU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr1_-_245027833_245027855	1.94199	ACAGUAU	ENST00000444376.2|HNRNPU|ENSG00000153187.12|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
hg19_v2_chr16_-_88851618_88851635	1.92088	ACAGUAU	ENST00000301015.9|PIEZO1|ENSG00000103335.15|piezo-type mechanosensitive ion channel component 1
hg19_v2_chr18_-_9614515_9614583	1.87438	ACAGUAU	ENST00000400556.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1 	ENST00000400555.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr9_-_14314066_14314075	1.84974	ACAGUAU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr14_+_23790655_23790680	1.84398	ACAGUAU	ENST00000397276.2|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr7_+_55086794_55086811	1.81891	ACAGUAU	ENST00000275493.2|EGFR|ENSG00000146648.11|epidermal growth factor receptor 	ENST00000442591.1|EGFR|ENSG00000146648.11|epidermal growth factor receptor
hg19_v2_chr20_+_39657454_39657470	1.73572	ACAGUAU	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr13_+_49550015_49550070	1.72666	ACAGUAU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr1_-_186649543_186649563	1.72019	ACAGUAU	ENST00000367468.5|PTGS2|ENSG00000073756.7|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr4_-_7873981_7874044	1.69819	ACAGUAU	ENST00000360265.4|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr3_+_150321068_150321123	1.69352	ACAGUAU	ENST00000471696.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000477889.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000485923.1|SELT|ENSG00000198843.8|Selenoprotein T
hg19_v2_chr3_-_136471204_136471249	1.66979	ACAGUAU	ENST00000480733.1|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000383202.2|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000236698.5|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000434713.2|STAG1|ENSG00000118007.8|stromal antigen 1
hg19_v2_chr10_+_31608054_31608156	1.66457	ACAGUAU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr17_-_60142609_60142657	1.65292	ACAGUAU	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr10_+_115674530_115674530	1.64879	ACAGUAU	ENST00000451472.1|AL162407.1|ENSG00000234631.1|CDNA FLJ20147 fis, clone COL07954; HCG1781466; Uncharacterized protein
hg19_v2_chr6_+_4890226_4890276	1.64315	ACAGUAU	ENST00000343762.5|CDYL|ENSG00000153046.13|chromodomain protein, Y-like
hg19_v2_chr6_-_53409890_53409927	1.60709	ACAGUAU	ENST00000229416.6|GCLC|ENSG00000001084.6|glutamate-cysteine ligase, catalytic subunit
hg19_v2_chr1_+_112162381_112162431	1.60287	ACAGUAU	ENST00000433097.1|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000369709.3|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000436150.2|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family
hg19_v2_chr1_+_2985760_2985775	1.58276	ACAGUAU	ENST00000378391.2|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000514189.1|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000270722.5|PRDM16|ENSG00000142611.12|PR domain containing 16
hg19_v2_chr1_+_198126093_198126207	1.55178	ACAGUAU	ENST00000367385.4|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000442588.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000538004.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7
hg19_v2_chr2_-_216300784_216300895	1.54827	ACAGUAU	ENST00000421182.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000432072.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000323926.6|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000336916.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357867.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000359671.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000346544.3|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000345488.5|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357009.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000446046.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000356005.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000443816.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000426059.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000354785.4|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr10_+_93683519_93683594	1.54324	ACAGUAU	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr4_-_66536057_66536071	1.53727	ACAGUAU	ENST00000273854.3|EPHA5|ENSG00000145242.9|EPH receptor A5
hg19_v2_chr2_-_40679186_40679297	1.53483	ACAGUAU	ENST00000406785.2|SLC8A1|ENSG00000183023.14|solute carrier family 8 (sodium/calcium exchanger), member 1
hg19_v2_chr2_+_208394616_208394655	1.53229	ACAGUAU	ENST00000432329.2|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000353267.3|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000445803.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr5_+_138940742_138940769	1.49355	ACAGUAU	ENST00000398733.3|UBE2D2|ENSG00000131508.11|ubiquitin-conjugating enzyme E2D 2 	ENST00000253815.2|UBE2D2|ENSG00000131508.11|ubiquitin-conjugating enzyme E2D 2 	ENST00000505007.1|UBE2D2|ENSG00000131508.11|ubiquitin-conjugating enzyme E2D 2
hg19_v2_chr1_-_217262969_217262995	1.47496	ACAGUAU	ENST00000361525.3|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr5_-_142783175_142783297	1.47389	ACAGUAU	ENST00000231509.3|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 	ENST00000394464.2|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
hg19_v2_chr9_-_16870704_16870841	1.46374	ACAGUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr12_-_57505121_57505216	1.42414	ACAGUAU	ENST00000538913.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000537215.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000454075.3|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000554825.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000553275.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000300134.3|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr9_+_118916082_118916108	1.40265	ACAGUAU	ENST00000328252.3|PAPPA|ENSG00000182752.8|pregnancy-associated plasma protein A, pappalysin 1
hg19_v2_chr1_+_193091080_193091222	1.40134	ACAGUAU	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr12_+_121124599_121124672	1.39565	ACAGUAU	ENST00000228506.3|MLEC|ENSG00000110917.3|malectin
hg19_v2_chr9_+_133454943_133455020	1.37849	ACAGUAU	ENST00000319725.9|FUBP3|ENSG00000107164.15|far upstream element (FUSE) binding protein 3
hg19_v2_chr6_-_139695757_139695795	1.37694	ACAGUAU	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr2_-_183903133_183903210	1.36702	ACAGUAU	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr6_+_143929307_143929322	1.36109	ACAGUAU	ENST00000427704.2|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2 	ENST00000305766.6|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2
hg19_v2_chr20_-_48770244_48770335	1.3497	ACAGUAU	ENST00000371650.5|TMEM189|ENSG00000240849.6|transmembrane protein 189 	ENST00000371652.4|TMEM189|ENSG00000240849.6|transmembrane protein 189 	ENST00000557021.1|TMEM189|ENSG00000240849.6|transmembrane protein 189
hg19_v2_chr6_-_111804393_111804436	1.34683	ACAGUAU	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr12_-_54069856_54069899	1.3301	ACAGUAU	ENST00000602871.1|ATP5G2|ENSG00000135390.13|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)
hg19_v2_chr2_-_225450013_225450068	1.32932	ACAGUAU	ENST00000264414.4|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr19_+_34663397_34663473	1.32129	ACAGUAU	ENST00000540746.2|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000544216.3|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000433627.5|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr8_-_95908902_95908927	1.30529	ACAGUAU	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr6_+_7107999_7108054	1.30339	ACAGUAU	ENST00000491191.1|RREB1|ENSG00000124782.15|ras responsive element binding protein 1 	ENST00000379938.2|RREB1|ENSG00000124782.15|ras responsive element binding protein 1 	ENST00000471433.1|RREB1|ENSG00000124782.15|ras responsive element binding protein 1
hg19_v2_chr20_+_51588873_51588953	1.29944	ACAGUAU	ENST00000371497.5|TSHZ2|ENSG00000182463.11|teashirt zinc finger homeobox 2
hg19_v2_chr8_+_126442563_126442624	1.29943	ACAGUAU	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr11_+_32914579_32914724	1.29707	ACAGUAU	ENST00000399302.2|QSER1|ENSG00000060749.10|glutamine and serine rich 1
hg19_v2_chr17_-_58469474_58469511	1.27044	ACAGUAU	ENST00000300896.4|USP32|ENSG00000170832.8|ubiquitin specific peptidase 32
hg19_v2_chr15_-_59665062_59665099	1.26657	ACAGUAU	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr15_-_75871589_75871676	1.25301	ACAGUAU	ENST00000306726.2|PTPN9|ENSG00000169410.5|protein tyrosine phosphatase, non-receptor type 9
hg19_v2_chr1_+_27022485_27022543	1.23146	ACAGUAU	ENST00000324856.7|ARID1A|ENSG00000117713.13|AT rich interactive domain 1A (SWI-like)
hg19_v2_chr7_-_47621736_47621747	1.22766	ACAGUAU	ENST00000311160.9|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr5_+_61602055_61602083	1.20963	ACAGUAU	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr14_-_31495569_31495636	1.20201	ACAGUAU	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr1_-_26232951_26232959	1.1924	ACAGUAU	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr4_+_4861385_4861398	1.16679	ACAGUAU	ENST00000382723.4|MSX1|ENSG00000163132.6|msh homeobox 1
hg19_v2_chr20_-_61493115_61493187	1.15663	ACAGUAU	ENST00000335351.3|TCFL5|ENSG00000101190.8|transcription factor-like 5 (basic helix-loop-helix) 	ENST00000217162.5|TCFL5|ENSG00000101190.8|transcription factor-like 5 (basic helix-loop-helix)
hg19_v2_chr1_+_147013182_147013329	1.15565	ACAGUAU	ENST00000234739.3|BCL9|ENSG00000116128.5|B-cell CLL/lymphoma 9
hg19_v2_chr7_-_82073109_82073150	1.15389	ACAGUAU	ENST00000356860.3|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr4_-_105416039_105416065	1.14594	ACAGUAU	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr7_-_102985035_102985277	1.14374	ACAGUAU	ENST00000426036.2|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000249270.7|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000454277.1|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000412522.1|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2
hg19_v2_chr4_-_71705590_71705662	1.14117	ACAGUAU	ENST00000254799.6|GRSF1|ENSG00000132463.9|G-rich RNA sequence binding factor 1
hg19_v2_chr16_+_66400533_66400545	1.1387	ACAGUAU	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr14_+_73525144_73525224	1.1335	ACAGUAU	ENST00000261973.7|RBM25|ENSG00000119707.9|RNA binding motif protein 25 	ENST00000540173.1|RBM25|ENSG00000119707.9|RNA binding motif protein 25
hg19_v2_chr3_-_125094093_125094198	1.09253	ACAGUAU	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr9_+_128509624_128509658	1.08956	ACAGUAU	ENST00000342287.5|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3 	ENST00000373487.4|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3
hg19_v2_chr1_+_214161272_214161322	1.08915	ACAGUAU	ENST00000498508.2|PROX1|ENSG00000117707.11|prospero homeobox 1 	ENST00000366958.4|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr12_+_68042495_68042508	1.08834	ACAGUAU	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr7_+_77469439_77469497	1.07605	ACAGUAU	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr12_+_93965451_93965494	1.07411	ACAGUAU	ENST00000548537.1|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr15_-_30114622_30114706	1.07276	ACAGUAU	ENST00000495972.2|TJP1|ENSG00000104067.12|tight junction protein 1 	ENST00000346128.6|TJP1|ENSG00000104067.12|tight junction protein 1
hg19_v2_chr7_-_120498357_120498456	1.06804	ACAGUAU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr16_-_19533404_19533467	1.06671	ACAGUAU	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr21_+_44394620_44394737	1.06647	ACAGUAU	ENST00000291547.5|PKNOX1|ENSG00000160199.10|PBX/knotted 1 homeobox 1
hg19_v2_chr20_-_34252759_34252843	1.05651	ACAGUAU	ENST00000414711.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000416778.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397442.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000440240.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000412056.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000352393.4|CPNE1|ENSG00000214078.7|copine I 	ENST00000359646.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000458038.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000424458.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000420363.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000434795.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374104.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437100.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000414664.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374114.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr5_+_14143728_14143829	1.04578	ACAGUAU	ENST00000344204.4|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor 	ENST00000537187.1|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor
hg19_v2_chr16_-_73082274_73082274	1.04569	ACAGUAU	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr5_+_127419449_127419540	1.04205	ACAGUAU	ENST00000262461.2|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2 	ENST00000343225.4|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2
hg19_v2_chr6_+_150920999_150921062	1.02437	ACAGUAU	ENST00000367328.1|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENST00000367326.1|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
hg19_v2_chr6_+_71998506_71998522	1.02037	ACAGUAU	ENST00000370435.4|OGFRL1|ENSG00000119900.7|opioid growth factor receptor-like 1
hg19_v2_chr3_-_99833333_99833357	1.0139	ACAGUAU	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr21_-_28338732_28338832	1.00493	ACAGUAU	ENST00000284987.5|ADAMTS5|ENSG00000154736.5|ADAM metallopeptidase with thrombospondin type 1 motif, 5
hg19_v2_chr4_-_74124502_74124523	1.0008	ACAGUAU	ENST00000358602.4|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000330838.6|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000561029.1|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr1_+_82266053_82266082	0.992414	ACAGUAU	ENST00000370715.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370713.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000319517.6|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370717.2|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000394879.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000271029.4|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000335786.5|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr14_-_52535712_52535753	0.99192	ACAGUAU	ENST00000216286.5|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen) 	ENST00000541773.1|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen)
hg19_v2_chr2_-_114036488_114036527	0.982158	ACAGUAU	ENST00000263335.7|PAX8|ENSG00000125618.12|paired box 8 	ENST00000397647.3|PAX8|ENSG00000125618.12|paired box 8 	ENST00000348715.5|PAX8|ENSG00000125618.12|paired box 8 	ENST00000429538.3|PAX8|ENSG00000125618.12|paired box 8
hg19_v2_chr3_+_15247686_15247784	0.979373	ACAGUAU	ENST00000253693.2|CAPN7|ENSG00000131375.5|calpain 7
hg19_v2_chr6_+_64345698_64345750	0.961235	ACAGUAU	ENST00000506783.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000481385.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000515594.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000494284.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000262043.3|PHF3|ENSG00000118482.7|PHD finger protein 3
hg19_v2_chr8_+_133787586_133787673	0.960268	ACAGUAU	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr1_-_31538517_31538632	0.951931	ACAGUAU	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr1_-_226374373_226374464	0.944537	ACAGUAU	ENST00000366812.5|ACBD3|ENSG00000182827.8|acyl-CoA binding domain containing 3
hg19_v2_chr2_+_228336849_228336904	0.938685	ACAGUAU	ENST00000409979.2|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000310078.8|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr2_+_160568978_160569064	0.937387	ACAGUAU	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr6_+_161412759_161412846	0.931851	ACAGUAU	ENST00000366919.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000392142.4|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000366920.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000348824.7|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4
hg19_v2_chr1_-_93645818_93645918	0.928555	ACAGUAU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr4_+_144434584_144434709	0.920581	ACAGUAU	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr8_-_13372395_13372429	0.920324	ACAGUAU	ENST00000276297.4|DLC1|ENSG00000164741.10|deleted in liver cancer 1 	ENST00000511869.1|DLC1|ENSG00000164741.10|deleted in liver cancer 1
hg19_v2_chr4_+_183164574_183164586	0.914465	ACAGUAU	ENST00000511685.1|TENM3|ENSG00000218336.3|teneurin transmembrane protein 3
hg19_v2_chr4_-_129208940_129208976	0.904693	ACAGUAU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr10_+_93558069_93558154	0.885527	ACAGUAU	ENST00000371627.4|TNKS2|ENSG00000107854.5|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
hg19_v2_chr1_-_235491462_235491534	0.877826	ACAGUAU	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr14_+_75230011_75230120	0.875069	ACAGUAU	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr3_+_25469724_25469773	0.871589	ACAGUAU	ENST00000437042.2|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr16_-_22385901_22385947	0.855037	ACAGUAU	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr9_+_77112244_77112281	0.834564	ACAGUAU	ENST00000376896.3|RORB|ENSG00000198963.6|RAR-related orphan receptor B
hg19_v2_chrX_+_51486481_51486549	0.834302	ACAGUAU	ENST00000340438.4|GSPT2|ENSG00000189369.7|G1 to S phase transition 2
hg19_v2_chr5_+_74632993_74633028	0.831971	ACAGUAU	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr18_+_9475668_9475698	0.828127	ACAGUAU	ENST00000383432.3|RALBP1|ENSG00000017797.7|ralA binding protein 1
hg19_v2_chrX_+_146993449_146993498	0.827376	ACAGUAU	ENST00000218200.8|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370471.3|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370477.1|FMR1|ENSG00000102081.9|fragile X mental retardation 1
hg19_v2_chr3_-_88108192_88108203	0.826358	ACAGUAU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr10_+_115614370_115614436	0.819577	ACAGUAU	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr5_-_95297678_95297775	0.815241	ACAGUAU	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr17_+_30677136_30677205	0.800593	ACAGUAU	ENST00000394670.4|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000321233.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394673.2|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000341711.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000579634.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000580759.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000342555.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000577908.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394679.5|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000582165.1|ZNF207|ENSG00000010244.12|zinc finger protein 207
hg19_v2_chr12_-_120806960_120806985	0.795338	ACAGUAU	ENST00000257552.2|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr5_-_40798263_40798300	0.786428	ACAGUAU	ENST00000296800.4|PRKAA1|ENSG00000132356.7|protein kinase, AMP-activated, alpha 1 catalytic subunit 	ENST00000397128.2|PRKAA1|ENSG00000132356.7|protein kinase, AMP-activated, alpha 1 catalytic subunit
hg19_v2_chr7_+_138145076_138145116	0.767081	ACAGUAU	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr4_+_126237554_126237554	0.755268	ACAGUAU	ENST00000394329.3|FAT4|ENSG00000196159.7|FAT atypical cadherin 4
hg19_v2_chr8_+_77593448_77593471	0.739413	ACAGUAU	ENST00000521891.2|ZFHX4|ENSG00000091656.11|zinc finger homeobox 4
hg19_v2_chr16_+_86544113_86544145	0.73517	ACAGUAU	ENST00000262426.4|FOXF1|ENSG00000103241.5|forkhead box F1
hg19_v2_chr1_+_100435315_100435345	0.72458	ACAGUAU	ENST00000370155.3|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 	ENST00000465289.1|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
hg19_v2_chrX_-_124097620_124097666	0.723751	ACAGUAU	ENST00000371130.3|TENM1|ENSG00000009694.9|teneurin transmembrane protein 1 	ENST00000422452.2|TENM1|ENSG00000009694.9|teneurin transmembrane protein 1
hg19_v2_chr3_+_152879985_152880038	0.723331	ACAGUAU	ENST00000323534.2|RAP2B|ENSG00000181467.2|RAP2B, member of RAS oncogene family
hg19_v2_chr17_-_65241281_65241326	0.721411	ACAGUAU	ENST00000358691.5|HELZ|ENSG00000198265.7|helicase with zinc finger 	ENST00000580168.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr18_-_23670546_23670605	0.717371	ACAGUAU	ENST00000542743.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000545952.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000539849.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000415083.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr20_-_14318248_14318264	0.71455	ACAGUAU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr1_-_27930102_27930143	0.707948	ACAGUAU	ENST00000247087.5|AHDC1|ENSG00000126705.9|AT hook, DNA binding motif, containing 1 	ENST00000374011.2|AHDC1|ENSG00000126705.9|AT hook, DNA binding motif, containing 1
hg19_v2_chr9_-_107690420_107690518	0.691328	ACAGUAU	ENST00000423487.2|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374733.1|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374736.3|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1
hg19_v2_chr4_-_73434498_73434516	0.688265	ACAGUAU	ENST00000286657.4|ADAMTS3|ENSG00000156140.4|ADAM metallopeptidase with thrombospondin type 1 motif, 3
hg19_v2_chr3_+_37284668_37284771	0.680919	ACAGUAU	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr12_-_31744031_31744059	0.673264	ACAGUAU	ENST00000389082.5|DENND5B|ENSG00000170456.10|DENN/MADD domain containing 5B
hg19_v2_chr9_-_95527079_95527148	0.669274	ACAGUAU	ENST00000356884.6|BICD2|ENSG00000185963.9|bicaudal D homolog 2 (Drosophila) 	ENST00000375512.3|BICD2|ENSG00000185963.9|bicaudal D homolog 2 (Drosophila)
hg19_v2_chr19_+_11071546_11071624	0.668247	ACAGUAU	ENST00000358026.2|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
hg19_v2_chr1_+_171454659_171454723	0.668227	ACAGUAU	ENST00000367742.3|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C 	ENST00000338920.4|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C
hg19_v2_chr10_+_60094735_60094749	0.651646	ACAGUAU	ENST00000373910.4|UBE2D1|ENSG00000072401.10|ubiquitin-conjugating enzyme E2D 1
hg19_v2_chr6_-_52926539_52926668	0.64341	ACAGUAU	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr14_-_37642016_37642071	0.633535	ACAGUAU	ENST00000331299.5|SLC25A21|ENSG00000183032.6|solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
hg19_v2_chr18_-_61089665_61089733	0.623245	ACAGUAU	ENST00000238497.5|VPS4B|ENSG00000119541.5|vacuolar protein sorting 4 homolog B (S. cerevisiae)
hg19_v2_chr15_-_77363513_77363570	0.602071	ACAGUAU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr1_+_193028552_193028589	0.598515	ACAGUAU	ENST00000400968.2|TROVE2|ENSG00000116747.8|TROVE domain family, member 2 	ENST00000432079.1|TROVE2|ENSG00000116747.8|TROVE domain family, member 2
hg19_v2_chr21_-_46238034_46238051	0.596539	ACAGUAU	ENST00000332859.6|SUMO3|ENSG00000184900.11|small ubiquitin-like modifier 3
hg19_v2_chr3_+_150126101_150126122	0.575509	ACAGUAU	ENST00000361875.3|TSC22D2|ENSG00000196428.8|TSC22 domain family, member 2 	ENST00000361136.2|TSC22D2|ENSG00000196428.8|TSC22 domain family, member 2
hg19_v2_chr12_-_28124903_28124957	0.569569	ACAGUAU	ENST00000395872.1|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone 	ENST00000354417.3|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone 	ENST00000201015.4|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone
hg19_v2_chr10_-_3827417_3827473	0.5635	ACAGUAU	ENST00000497571.1|KLF6|ENSG00000067082.10|Kruppel-like factor 6 	ENST00000542957.1|KLF6|ENSG00000067082.10|Kruppel-like factor 6
hg19_v2_chr6_+_87865262_87865339	0.555544	ACAGUAU	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr18_+_67956135_67956144	0.553892	ACAGUAU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr14_+_57857262_57857334	0.548906	ACAGUAU	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr17_+_2496971_2497040	0.540551	ACAGUAU	ENST00000397195.5|PAFAH1B1|ENSG00000007168.8|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
hg19_v2_chr5_-_126366500_126366547	0.533472	ACAGUAU	ENST00000308660.5|MARCH3|ENSG00000173926.5|membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase
hg19_v2_chr14_-_53162361_53162513	0.512447	ACAGUAU	ENST00000395686.3|ERO1L|ENSG00000197930.8|ERO1-like (S. cerevisiae)
hg19_v2_chr1_-_174992544_174992576	0.471209	ACAGUAU	ENST00000476371.1|MRPS14|ENSG00000120333.4|mitochondrial ribosomal protein S14
hg19_v2_chr3_-_52713729_52713784	0.454009	ACAGUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr16_+_58059470_58059470	0.448693	ACAGUAU	ENST00000219271.3|MMP15|ENSG00000102996.4|matrix metallopeptidase 15 (membrane-inserted)
hg19_v2_chr3_+_36421826_36421844	0.445986	ACAGUAU	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr20_+_62795827_62795878	0.443604	ACAGUAU	ENST00000328439.1|MYT1|ENSG00000196132.7|myelin transcription factor 1 	ENST00000536311.1|MYT1|ENSG00000196132.7|myelin transcription factor 1
hg19_v2_chr8_+_64081118_64081131	0.432296	ACAGUAU	ENST00000539294.1|YTHDF3|ENSG00000185728.12|YTH domain family, member 3
hg19_v2_chr12_+_14518598_14518663	0.426278	ACAGUAU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr7_-_81399438_81399514	0.42053	ACAGUAU	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr8_-_74884511_74884546	0.415923	ACAGUAU	ENST00000518127.1|TCEB1|ENSG00000154582.12|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
hg19_v2_chr1_+_186798073_186798147	0.415101	ACAGUAU	ENST00000367466.3|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent) 	ENST00000442353.2|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent)
hg19_v2_chr6_+_122720681_122720713	0.407895	ACAGUAU	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr7_-_112727774_112727833	0.406387	ACAGUAU	ENST00000297146.3|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000501255.2|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr7_+_18535346_18535399	0.405672	ACAGUAU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr13_+_112721913_112721913	0.39809	ACAGUAU	ENST00000330949.1|SOX1|ENSG00000182968.3|SRY (sex determining region Y)-box 1
hg19_v2_chr3_-_15901278_15901354	0.375403	ACAGUAU	ENST00000399451.2|ANKRD28|ENSG00000206560.6|ankyrin repeat domain 28
hg19_v2_chr6_+_163835669_163835693	0.372855	ACAGUAU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr8_-_81083731_81083813	0.372609	ACAGUAU	ENST00000379096.5|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr1_+_36396677_36396749	0.368941	ACAGUAU	ENST00000373191.4|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3 	ENST00000397828.2|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr17_-_77813186_77813249	0.363021	ACAGUAU	ENST00000448310.1|CBX4|ENSG00000141582.10|chromobox homolog 4 	ENST00000269397.4|CBX4|ENSG00000141582.10|chromobox homolog 4
hg19_v2_chrX_+_102631248_102631335	0.363005	ACAGUAU	ENST00000361298.4|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372645.3|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372635.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr4_+_26585538_26585680	0.354619	ACAGUAU	ENST00000264866.4|TBC1D19|ENSG00000109680.6|TBC1 domain family, member 19
hg19_v2_chr4_-_85887503_85887544	0.353333	ACAGUAU	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr2_+_5832799_5832799	0.343607	ACAGUAU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr5_+_176560742_176560926	0.322021	ACAGUAU	ENST00000439151.2|NSD1|ENSG00000165671.14|nuclear receptor binding SET domain protein 1
hg19_v2_chr3_-_119813264_119813272	0.317275	ACAGUAU	ENST00000264235.8|GSK3B|ENSG00000082701.10|glycogen synthase kinase 3 beta
hg19_v2_chr7_-_27196267_27196311	0.290678	ACAGUAU	ENST00000242159.3|HOXA7|ENSG00000122592.6|homeobox A7
hg19_v2_chr18_-_31803435_31803515	0.271976	ACAGUAU	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr16_+_8891670_8891734	0.265478	ACAGUAU	ENST00000268261.4|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000539622.1|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000569958.1|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000537352.1|PMM2|ENSG00000140650.7|phosphomannomutase 2
hg19_v2_chr1_-_169455169_169455241	0.264942	ACAGUAU	ENST00000367804.4|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2 	ENST00000236137.5|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2
hg19_v2_chr1_+_203764742_203764834	0.26204	ACAGUAU	ENST00000432282.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000453771.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367214.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367212.3|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000332127.4|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A
hg19_v2_chr1_-_243418344_243418356	0.257094	ACAGUAU	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr12_+_111843749_111843763	0.253869	ACAGUAU	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr10_+_112631547_112631596	0.248097	ACAGUAU	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chr5_-_40755987_40756077	0.248069	ACAGUAU	ENST00000337702.4|TTC33|ENSG00000113638.8|tetratricopeptide repeat domain 33
hg19_v2_chr11_+_33563821_33563877	0.233511	ACAGUAU	ENST00000321505.4|KIAA1549L|ENSG00000110427.10|KIAA1549-like 	ENST00000265654.5|KIAA1549L|ENSG00000110427.10|KIAA1549-like 	ENST00000389726.3|KIAA1549L|ENSG00000110427.10|KIAA1549-like
hg19_v2_chr11_+_69924397_69924449	0.211731	ACAGUAU	ENST00000355303.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr11_+_70116779_70116858	0.211575	ACAGUAU	ENST00000253925.7|PPFIA1|ENSG00000131626.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 	ENST00000389547.3|PPFIA1|ENSG00000131626.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
hg19_v2_chr1_+_179262905_179262986	0.207864	ACAGUAU	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr15_+_49715293_49715448	0.205982	ACAGUAU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr11_-_88796803_88796827	0.199067	ACAGUAU	ENST00000418177.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5 	ENST00000455756.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5
hg19_v2_chr4_+_41362796_41362841	0.194323	ACAGUAU	ENST00000508501.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512946.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000313860.7|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512632.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512820.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr5_+_85913721_85913790	0.180398	ACAGUAU	ENST00000247655.3|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000509578.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000515763.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc
hg19_v2_chr9_-_98279241_98279339	0.163907	ACAGUAU	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr1_-_47779762_47779827	0.163576	ACAGUAU	ENST00000371877.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000360380.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000337817.5|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000447475.2|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus
hg19_v2_chr5_+_137688285_137688429	0.159181	ACAGUAU	ENST00000314358.5|KDM3B|ENSG00000120733.9|lysine (K)-specific demethylase 3B
hg19_v2_chr15_-_61521495_61521518	0.143634	ACAGUAU	ENST00000335670.6|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr6_+_53659746_53659817	0.1347	ACAGUAU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr13_+_33160553_33160564	0.132604	ACAGUAU	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr6_-_56707943_56708013	0.120803	ACAGUAU	ENST00000370769.4|DST|ENSG00000151914.13|dystonin 	ENST00000421834.2|DST|ENSG00000151914.13|dystonin 	ENST00000312431.6|DST|ENSG00000151914.13|dystonin 	ENST00000361203.3|DST|ENSG00000151914.13|dystonin 	ENST00000523817.1|DST|ENSG00000151914.13|dystonin
hg19_v2_chr16_+_4674814_4674962	0.10219	ACAGUAU	ENST00000415496.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000587747.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000399577.5|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000588994.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000586183.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr10_+_133753533_133753533	0.0992074	ACAGUAU	ENST00000422256.2|PPP2R2D|ENSG00000175470.14|protein phosphatase 2, regulatory subunit B, delta
hg19_v2_chr15_+_84322827_84322861	0.0953094	ACAGUAU	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chr11_-_115375107_115375283	0.0811658	ACAGUAU	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr9_+_78505581_78505621	0.0594519	ACAGUAU	ENST00000376767.3|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5 	ENST00000376752.4|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5
hg19_v2_chr2_-_11484710_11484812	0.0482732	ACAGUAU	ENST00000315872.6|ROCK2|ENSG00000134318.9|Rho-associated, coiled-coil containing protein kinase 2
hg19_v2_chr11_+_107879459_107879702	0.0334849	ACAGUAU	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr1_+_167190066_167190156	0.0267196	ACAGUAU	ENST00000367866.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000429375.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000452019.1|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000420254.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000541643.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr6_-_94129244_94129284	0.0247149	ACAGUAU	ENST00000369303.4|EPHA7|ENSG00000135333.9|EPH receptor A7 	ENST00000369297.1|EPHA7|ENSG00000135333.9|EPH receptor A7
hg19_v2_chr6_+_34857019_34857117	0.0235691	ACAGUAU	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr12_+_105501487_105501562	0.0151538	ACAGUAU	ENST00000332180.5|KIAA1033|ENSG00000136051.9|KIAA1033
hg19_v2_chr6_+_168227611_168227813	0.010481	ACAGUAU	ENST00000344191.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000351017.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000392108.3|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000366806.2|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000392112.1|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000400824.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000447894.2|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000400822.3|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
hg19_v2_chr2_-_161056802_161056815	0.00446248	ACAGUAU	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr8_-_37756972_37757022	0.00395207	ACAGUAU	ENST00000330843.4|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I) 	ENST00000522727.1|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I) 	ENST00000287263.4|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I)
