hg19_v2_chr22_-_39548627_39548692	6.88113	ACUGGCC	ENST00000216133.5|CBX7|ENSG00000100307.8|chromobox homolog 7
hg19_v2_chr12_+_79258547_79258607	3.61157	ACUGGCC	ENST00000457153.2|SYT1|ENSG00000067715.9|synaptotagmin I
hg19_v2_chr4_+_55524085_55524110	3.45872	ACUGGCC	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chrX_+_110339439_110339605	3.32346	ACUGGCC	ENST00000372010.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000519681.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000372007.5|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3
hg19_v2_chr3_-_57199397_57199432	3.29664	ACUGGCC	ENST00000296318.7|IL17RD|ENSG00000144730.12|interleukin 17 receptor D
hg19_v2_chr3_-_123603137_123603203	2.6363	ACUGGCC	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr1_+_183605200_183605220	2.63317	ACUGGCC	ENST00000304685.4|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr18_-_53255766_53255860	2.48327	ACUGGCC	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr11_-_62494821_62494953	2.1861	ACUGGCC	ENST00000301785.5|HNRNPUL2|ENSG00000214753.2|heterogeneous nuclear ribonucleoprotein U-like 2
hg19_v2_chr7_+_108210012_108210012	2.14065	ACUGGCC	ENST00000249356.3|DNAJB9|ENSG00000128590.4|DnaJ (Hsp40) homolog, subfamily B, member 9
hg19_v2_chr10_-_62149433_62149488	2.12906	ACUGGCC	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_-_217560248_217560278	1.90375	ACUGGCC	ENST00000233813.4|IGFBP5|ENSG00000115461.4|insulin-like growth factor binding protein 5
hg19_v2_chr1_-_92351769_92351787	1.8751	ACUGGCC	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr14_+_90863327_90863356	1.78365	ACUGGCC	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr20_-_4982132_4982164	1.76585	ACUGGCC	ENST00000338244.1|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2 	ENST00000424750.2|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2
hg19_v2_chr5_-_133512683_133512729	1.75752	ACUGGCC	ENST00000353411.6|SKP1|ENSG00000113558.14|S-phase kinase-associated protein 1
hg19_v2_chr10_+_70480963_70481010	1.7271	ACUGGCC	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chrX_-_40594755_40594809	1.69718	ACUGGCC	ENST00000324817.1|MED14|ENSG00000180182.6|mediator complex subunit 14
hg19_v2_chr12_-_111021110_111021142	1.56498	ACUGGCC	ENST00000354300.3|PPTC7|ENSG00000196850.4|PTC7 protein phosphatase homolog (S. cerevisiae)
hg19_v2_chr5_+_177540444_177540506	1.51502	ACUGGCC	ENST00000274605.5|N4BP3|ENSG00000145911.5|NEDD4 binding protein 3
hg19_v2_chr14_-_80677970_80678051	1.49837	ACUGGCC	ENST00000438257.4|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr11_+_128563652_128563689	1.48146	ACUGGCC	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr4_-_87281224_87281375	1.38827	ACUGGCC	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr2_+_12857015_12857041	1.34301	ACUGGCC	ENST00000155926.4|TRIB2|ENSG00000071575.7|tribbles pseudokinase 2
hg19_v2_chr13_+_98794810_98794826	1.3366	ACUGGCC	ENST00000595437.1|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr1_+_77333117_77333139	1.30774	ACUGGCC	ENST00000477717.1|ST6GALNAC5|ENSG00000117069.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
hg19_v2_chr2_+_176957619_176957619	1.28649	ACUGGCC	ENST00000392539.3|HOXD13|ENSG00000128714.5|homeobox D13
hg19_v2_chr12_-_50297638_50297691	1.23088	ACUGGCC	ENST00000320634.3|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr15_+_64443905_64443943	1.20873	ACUGGCC	ENST00000325881.4|SNX22|ENSG00000157734.9|sorting nexin 22
hg19_v2_chr22_+_40390930_40390994	1.18338	ACUGGCC	ENST00000333407.6|FAM83F|ENSG00000133477.12|family with sequence similarity 83, member F
hg19_v2_chr5_+_172483347_172483407	1.18191	ACUGGCC	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr18_+_46065393_46065444	1.17199	ACUGGCC	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr11_-_115375107_115375283	1.16649	ACUGGCC	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr2_+_242641442_242641478	1.16357	ACUGGCC	ENST00000313552.6|ING5|ENSG00000168395.10|inhibitor of growth family, member 5 	ENST00000406941.1|ING5|ENSG00000168395.10|inhibitor of growth family, member 5
hg19_v2_chr8_-_93115445_93115462	1.13509	ACUGGCC	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr14_-_50698276_50698304	1.08495	ACUGGCC	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr6_+_39760783_39760796	1.02685	ACUGGCC	ENST00000398904.2|DAAM2|ENSG00000146122.12|dishevelled associated activator of morphogenesis 2 	ENST00000538976.1|DAAM2|ENSG00000146122.12|dishevelled associated activator of morphogenesis 2
hg19_v2_chr11_-_46940074_46940193	0.962507	ACUGGCC	ENST00000378623.1|LRP4|ENSG00000134569.5|low density lipoprotein receptor-related protein 4 	ENST00000534404.1|LRP4|ENSG00000134569.5|low density lipoprotein receptor-related protein 4
hg19_v2_chr2_-_206950781_206950947	0.953689	ACUGGCC	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr17_-_4167142_4167281	0.913028	ACUGGCC	ENST00000570535.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000574367.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000341657.4|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000433651.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr7_-_143059845_143059866	0.887964	ACUGGCC	ENST00000443739.2|FAM131B|ENSG00000159784.13|family with sequence similarity 131, member B
hg19_v2_chr2_+_48541776_48541874	0.881734	ACUGGCC	ENST00000413569.1|FOXN2|ENSG00000170802.11|forkhead box N2 	ENST00000340553.3|FOXN2|ENSG00000170802.11|forkhead box N2
hg19_v2_chr12_-_42538657_42538720	0.881191	ACUGGCC	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr3_-_128902729_128902753	0.827079	ACUGGCC	ENST00000451728.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000446936.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000502976.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000500450.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000441626.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr10_-_102279586_102279711	0.821184	ACUGGCC	ENST00000370345.3|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000451524.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000370329.5|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae)
hg19_v2_chr17_+_68165657_68165688	0.818958	ACUGGCC	ENST00000243457.3|KCNJ2|ENSG00000123700.4|potassium inwardly-rectifying channel, subfamily J, member 2
hg19_v2_chr2_-_213403565_213403584	0.75258	ACUGGCC	ENST00000342788.4|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 	ENST00000436443.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr6_-_29527702_29527702	0.743921	ACUGGCC	ENST00000377050.4|UBD|ENSG00000213886.3|ubiquitin D
hg19_v2_chrX_-_47479246_47479272	0.661392	ACUGGCC	ENST00000295987.7|SYN1|ENSG00000008056.8|synapsin I 	ENST00000340666.4|SYN1|ENSG00000008056.8|synapsin I
hg19_v2_chr16_-_4166186_4166186	0.62152	ACUGGCC	ENST00000294016.3|ADCY9|ENSG00000162104.5|adenylate cyclase 9
hg19_v2_chr19_+_39616410_39616474	0.617248	ACUGGCC	ENST00000602004.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000599470.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000321944.4|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000593480.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000358301.3|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000593690.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000599386.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4
hg19_v2_chr12_-_96794143_96794264	0.611302	ACUGGCC	ENST00000543119.2|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chrX_+_151806637_151806637	0.588863	ACUGGCC	ENST00000370306.2|GABRQ|ENSG00000147402.7|gamma-aminobutyric acid (GABA) A receptor, theta
hg19_v2_chr12_+_11802753_11802834	0.588695	ACUGGCC	ENST00000396373.4|ETV6|ENSG00000139083.6|ets variant 6
hg19_v2_chr12_-_104234966_104234984	0.567405	ACUGGCC	ENST00000392876.3|NT5DC3|ENSG00000111696.7|5'-nucleotidase domain containing 3
hg19_v2_chr7_-_14029515_14029642	0.564578	ACUGGCC	ENST00000430479.1|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000405218.2|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000343495.5|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr2_+_113931513_113931583	0.552824	ACUGGCC	ENST00000245796.6|PSD4|ENSG00000125637.11|pleckstrin and Sec7 domain containing 4 	ENST00000441564.3|PSD4|ENSG00000125637.11|pleckstrin and Sec7 domain containing 4
hg19_v2_chr17_-_33416231_33416338	0.53051	ACUGGCC	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr7_+_155250824_155250824	0.522405	ACUGGCC	ENST00000297375.4|EN2|ENSG00000164778.4|engrailed homeobox 2
hg19_v2_chr14_+_23775971_23776000	0.516571	ACUGGCC	ENST00000250405.5|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr3_+_71803201_71803201	0.504538	ACUGGCC	ENST00000304411.2|GPR27|ENSG00000170837.2|G protein-coupled receptor 27
hg19_v2_chr1_+_151584544_151584558	0.458004	ACUGGCC	ENST00000458013.2|SNX27|ENSG00000143376.8|sorting nexin family member 27 	ENST00000368843.3|SNX27|ENSG00000143376.8|sorting nexin family member 27
hg19_v2_chr17_+_8213590_8213603	0.438346	ACUGGCC	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr16_+_56225248_56225307	0.43222	ACUGGCC	ENST00000262493.6|GNAO1|ENSG00000087258.9|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O
hg19_v2_chr2_-_69870835_69870853	0.425533	ACUGGCC	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr10_-_38146510_38146576	0.417271	ACUGGCC	ENST00000395867.3|ZNF248|ENSG00000198105.7|zinc finger protein 248
hg19_v2_chr14_-_27066636_27066701	0.39912	ACUGGCC	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr17_+_44668035_44668100	0.395165	ACUGGCC	ENST00000398238.4|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor 	ENST00000225282.8|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr9_-_135819987_135820020	0.378566	ACUGGCC	ENST00000298552.3|TSC1|ENSG00000165699.9|tuberous sclerosis 1 	ENST00000403810.1|TSC1|ENSG00000165699.9|tuberous sclerosis 1
hg19_v2_chr20_+_57226284_57226345	0.35841	ACUGGCC	ENST00000458280.1|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000355957.5|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000361770.5|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000312283.8|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000412911.1|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000359617.4|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000371141.4|STX16|ENSG00000124222.17|syntaxin 16
hg19_v2_chr11_-_124670550_124670574	0.35573	ACUGGCC	ENST00000239614.4|MSANTD2|ENSG00000120458.5|Myb/SANT-like DNA-binding domain containing 2
hg19_v2_chr9_-_37465396_37465454	0.331094	ACUGGCC	ENST00000307750.4|ZBTB5|ENSG00000168795.4|zinc finger and BTB domain containing 5
hg19_v2_chr11_+_120207787_120207962	0.327745	ACUGGCC	ENST00000397843.2|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12 	ENST00000356641.3|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr1_-_169863016_169863109	0.316685	ACUGGCC	ENST00000367772.4|SCYL3|ENSG00000000457.9|SCY1-like 3 (S. cerevisiae) 	ENST00000367771.6|SCYL3|ENSG00000000457.9|SCY1-like 3 (S. cerevisiae)
hg19_v2_chr11_-_128392085_128392232	0.313194	ACUGGCC	ENST00000526145.2|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000531611.1|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000319397.6|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000345075.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000535549.1|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr13_+_111365602_111365625	0.308303	ACUGGCC	ENST00000333219.7|ING1|ENSG00000153487.11|inhibitor of growth family, member 1
hg19_v2_chr2_+_29204161_29204178	0.306195	ACUGGCC	ENST00000379558.4|FAM179A|ENSG00000189350.8|family with sequence similarity 179, member A 	ENST00000403861.2|FAM179A|ENSG00000189350.8|family with sequence similarity 179, member A
hg19_v2_chr18_+_55711575_55711628	0.302454	ACUGGCC	ENST00000356462.6|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000400345.3|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000589054.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000256832.7|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr1_+_109792641_109792641	0.301819	ACUGGCC	ENST00000271332.3|CELSR2|ENSG00000143126.7|cadherin, EGF LAG seven-pass G-type receptor 2
hg19_v2_chr11_+_118307179_118307228	0.26393	ACUGGCC	ENST00000534358.1|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000531904.2|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000389506.5|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000354520.4|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A
hg19_v2_chr21_-_35831880_35831902	0.252931	ACUGGCC	ENST00000399289.3|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1 	ENST00000432085.1|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1
hg19_v2_chr9_-_3525968_3526016	0.225868	ACUGGCC	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr12_+_94542459_94542513	0.220067	ACUGGCC	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr19_-_14629224_14629262	0.216126	ACUGGCC	ENST00000254322.2|DNAJB1|ENSG00000132002.3|DnaJ (Hsp40) homolog, subfamily B, member 1
hg19_v2_chr5_+_133861790_133861829	0.18247	ACUGGCC	ENST00000395003.1|PHF15|ENSG00000043143.16|jade family PHD finger 2
hg19_v2_chr10_-_99052382_99052413	0.174229	ACUGGCC	ENST00000453547.2|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000466484.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000316676.8|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358308.3|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358531.4|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr14_+_57046500_57046529	0.151556	ACUGGCC	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr17_-_66287257_66287276	0.141867	ACUGGCC	ENST00000327268.4|SLC16A6|ENSG00000108932.7|solute carrier family 16, member 6
hg19_v2_chr1_+_203764742_203764834	0.137332	ACUGGCC	ENST00000432282.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000453771.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367214.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367212.3|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000332127.4|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A
hg19_v2_chr10_+_97515409_97515442	0.134389	ACUGGCC	ENST00000371207.3|ENTPD1|ENSG00000138185.12|ectonucleoside triphosphate diphosphohydrolase 1 	ENST00000543964.1|ENTPD1|ENSG00000138185.12|ectonucleoside triphosphate diphosphohydrolase 1
hg19_v2_chr22_+_24666763_24666876	0.125301	ACUGGCC	ENST00000437398.1|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like 	ENST00000421374.1|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like 	ENST00000314328.9|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like 	ENST00000541492.1|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like
hg19_v2_chr20_+_42086525_42086568	0.0890651	ACUGGCC	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr17_+_48796905_48797008	0.0871929	ACUGGCC	ENST00000505658.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000393227.2|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000240304.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000311571.3|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000505619.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000544170.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000510984.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae)
hg19_v2_chr15_+_84322827_84322861	0.0705395	ACUGGCC	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chr17_+_61627814_61627871	0.0697266	ACUGGCC	ENST00000310827.4|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000431926.1|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000415273.2|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7
hg19_v2_chr15_-_61521495_61521518	0.0688466	ACUGGCC	ENST00000335670.6|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr8_-_91095099_91095113	0.0547184	ACUGGCC	ENST00000265431.3|CALB1|ENSG00000104327.3|calbindin 1, 28kDa
hg19_v2_chr17_-_38020392_38020477	0.0519666	ACUGGCC	ENST00000346872.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439167.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377945.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000394189.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377944.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377958.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000535189.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377952.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr5_+_38846101_38846174	0.0383098	ACUGGCC	ENST00000274276.3|OSMR|ENSG00000145623.8|oncostatin M receptor
hg19_v2_chr20_-_14318248_14318264	0.0382994	ACUGGCC	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr4_-_23891693_23891706	0.0350232	ACUGGCC	ENST00000264867.2|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chr1_+_145507587_145507633	0.0290754	ACUGGCC	ENST00000330165.8|RBM8A|ENSG00000131795.8|RNA binding motif protein 8A 	ENST00000369307.3|RBM8A|ENSG00000131795.8|RNA binding motif protein 8A
hg19_v2_chr1_-_150552006_150552093	0.0198988	ACUGGCC	ENST00000307940.3|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related) 	ENST00000369026.2|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related)
