hg19_v2_chr7_+_94023873_94023873	5.70251	AGGUAGU	ENST00000297268.6|COL1A2|ENSG00000164692.13|collagen, type I, alpha 2
hg19_v2_chr2_+_189839046_189839105	4.83931	AGGUAGU	ENST00000304636.3|COL3A1|ENSG00000168542.8|collagen, type III, alpha 1 	ENST00000317840.5|COL3A1|ENSG00000168542.8|collagen, type III, alpha 1
hg19_v2_chr12_+_66217911_66218018	4.09912	AGGUAGU	ENST00000403681.2|HMGA2|ENSG00000149948.9|high mobility group AT-hook 2
hg19_v2_chr5_-_131132614_131132648	3.47846	AGGUAGU	ENST00000307968.7|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000307954.8|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr1_-_204380919_204380953	3.05739	AGGUAGU	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr3_-_28390581_28390618	3.01292	AGGUAGU	ENST00000479665.1|AZI2|ENSG00000163512.9|5-azacytidine induced 2
hg19_v2_chr17_-_46682321_46682362	2.78403	AGGUAGU	ENST00000225648.3|HOXB6|ENSG00000108511.8|homeobox B6 	ENST00000484302.2|HOXB6|ENSG00000108511.8|homeobox B6
hg19_v2_chr3_+_158991025_158991083	2.64832	AGGUAGU	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr17_-_48278983_48278999	2.47835	AGGUAGU	ENST00000225964.5|COL1A1|ENSG00000108821.9|collagen, type I, alpha 1
hg19_v2_chr3_+_159557637_159557650	2.39741	AGGUAGU	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr3_+_110790590_110790603	2.36731	AGGUAGU	ENST00000485303.1|PVRL3|ENSG00000177707.6|poliovirus receptor-related 3
hg19_v2_chr1_-_115259337_115259515	2.2681	AGGUAGU	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr9_-_16870704_16870841	2.2506	AGGUAGU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr3_+_61547585_61547585	2.02222	AGGUAGU	ENST00000295874.10|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G 	ENST00000474889.1|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G
hg19_v2_chr17_-_46688334_46688385	2.00346	AGGUAGU	ENST00000239165.7|HOXB7|ENSG00000260027.3|homeobox B7
hg19_v2_chr7_-_23510086_23510118	1.98316	AGGUAGU	ENST00000258729.3|IGF2BP3|ENSG00000136231.9|insulin-like growth factor 2 mRNA binding protein 3
hg19_v2_chr2_+_204192942_204193038	1.96879	AGGUAGU	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chr5_+_178286925_178287007	1.90679	AGGUAGU	ENST00000322434.3|ZNF354B|ENSG00000178338.6|zinc finger protein 354B
hg19_v2_chr18_+_19749386_19749404	1.88844	AGGUAGU	ENST00000269216.3|GATA6|ENSG00000141448.4|GATA binding protein 6
hg19_v2_chr2_-_39664405_39664453	1.81609	AGGUAGU	ENST00000341681.5|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3 	ENST00000263881.3|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3
hg19_v2_chr2_+_242641442_242641478	1.81138	AGGUAGU	ENST00000313552.6|ING5|ENSG00000168395.10|inhibitor of growth family, member 5 	ENST00000406941.1|ING5|ENSG00000168395.10|inhibitor of growth family, member 5
hg19_v2_chrX_-_132549506_132549526	1.79134	AGGUAGU	ENST00000370828.3|GPC4|ENSG00000076716.7|glypican 4
hg19_v2_chr5_-_37371278_37371289	1.77723	AGGUAGU	ENST00000231498.3|NUP155|ENSG00000113569.11|nucleoporin 155kDa
hg19_v2_chr7_+_94285637_94285689	1.77599	AGGUAGU	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chrX_+_134166333_134166371	1.5361	AGGUAGU	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr8_-_82754427_82754539	1.52346	AGGUAGU	ENST00000353788.4|SNX16|ENSG00000104497.9|sorting nexin 16 	ENST00000520618.1|SNX16|ENSG00000104497.9|sorting nexin 16 	ENST00000518183.1|SNX16|ENSG00000104497.9|sorting nexin 16 	ENST00000396330.2|SNX16|ENSG00000104497.9|sorting nexin 16 	ENST00000519119.1|SNX16|ENSG00000104497.9|sorting nexin 16 	ENST00000345957.4|SNX16|ENSG00000104497.9|sorting nexin 16
hg19_v2_chr4_+_113066552_113066563	1.35335	AGGUAGU	ENST00000309733.5|C4orf32|ENSG00000174749.5|chromosome 4 open reading frame 32
hg19_v2_chr1_+_164528866_164528877	1.35043	AGGUAGU	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr14_-_57735528_57735726	1.27983	AGGUAGU	ENST00000340918.7|EXOC5|ENSG00000070367.11|exocyst complex component 5 	ENST00000413566.2|EXOC5|ENSG00000070367.11|exocyst complex component 5
hg19_v2_chr12_-_69326940_69326993	1.25558	AGGUAGU	ENST00000549781.1|CPM|ENSG00000135678.7|carboxypeptidase M 	ENST00000548262.1|CPM|ENSG00000135678.7|carboxypeptidase M 	ENST00000551568.1|CPM|ENSG00000135678.7|carboxypeptidase M 	ENST00000548954.1|CPM|ENSG00000135678.7|carboxypeptidase M
hg19_v2_chr20_+_306221_306239	1.23901	AGGUAGU	ENST00000342665.2|SOX12|ENSG00000177732.6|SRY (sex determining region Y)-box 12
hg19_v2_chrX_+_95939711_95939786	1.23859	AGGUAGU	ENST00000373049.4|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2 	ENST00000324765.8|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2
hg19_v2_chr3_+_14989076_14989113	1.15199	AGGUAGU	ENST00000413118.1|NR2C2|ENSG00000177463.11|nuclear receptor subfamily 2, group C, member 2 	ENST00000425241.1|NR2C2|ENSG00000177463.11|nuclear receptor subfamily 2, group C, member 2
hg19_v2_chrX_-_134186144_134186228	1.14597	AGGUAGU	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr20_+_49348081_49348096	1.13699	AGGUAGU	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr1_+_193091080_193091222	1.13334	AGGUAGU	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr15_+_45879321_45879438	1.10684	AGGUAGU	ENST00000220531.3|BLOC1S6|ENSG00000104164.6|biogenesis of lysosomal organelles complex-1, subunit 6, pallidin 	ENST00000567461.1|BLOC1S6|ENSG00000104164.6|biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
hg19_v2_chr1_+_18958008_18958023	1.06892	AGGUAGU	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr9_+_99212403_99212536	1.05134	AGGUAGU	ENST00000375251.3|HABP4|ENSG00000130956.9|hyaluronan binding protein 4 	ENST00000375249.4|HABP4|ENSG00000130956.9|hyaluronan binding protein 4
hg19_v2_chr12_-_25102252_25102393	1.03206	AGGUAGU	ENST00000261192.7|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr8_+_22102626_22102748	1.00963	AGGUAGU	ENST00000519237.1|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 	ENST00000397802.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr11_-_796197_796361	0.956307	AGGUAGU	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr1_+_26737253_26737269	0.920027	AGGUAGU	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr11_-_110167352_110167447	0.912595	AGGUAGU	ENST00000533991.1|RDX|ENSG00000137710.10|radixin 	ENST00000528498.1|RDX|ENSG00000137710.10|radixin 	ENST00000405097.1|RDX|ENSG00000137710.10|radixin 	ENST00000528900.1|RDX|ENSG00000137710.10|radixin 	ENST00000530301.1|RDX|ENSG00000137710.10|radixin 	ENST00000343115.4|RDX|ENSG00000137710.10|radixin
hg19_v2_chr9_+_132934835_132934857	0.858527	AGGUAGU	ENST00000372398.3|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr18_+_6834472_6834495	0.853383	AGGUAGU	ENST00000581099.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000419673.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000531294.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr5_+_38846101_38846174	0.809719	AGGUAGU	ENST00000274276.3|OSMR|ENSG00000145623.8|oncostatin M receptor
hg19_v2_chr2_+_109335929_109336002	0.795618	AGGUAGU	ENST00000283195.6|RANBP2|ENSG00000153201.11|RAN binding protein 2
hg19_v2_chr8_+_37594130_37594169	0.768653	AGGUAGU	ENST00000518526.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000523887.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000276461.5|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2
hg19_v2_chr9_+_115983808_115983880	0.722604	AGGUAGU	ENST00000374210.6|SLC31A1|ENSG00000136868.9|solute carrier family 31 (copper transporter), member 1 	ENST00000374212.4|SLC31A1|ENSG00000136868.9|solute carrier family 31 (copper transporter), member 1
hg19_v2_chr15_-_34502278_34502318	0.676324	AGGUAGU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr6_+_34204642_34204664	0.658263	AGGUAGU	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr12_-_93323013_93323112	0.649468	AGGUAGU	ENST00000322349.8|EEA1|ENSG00000102189.12|early endosome antigen 1
hg19_v2_chr15_+_52043758_52043809	0.646051	AGGUAGU	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr2_+_170590321_170590408	0.643923	AGGUAGU	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr5_-_35230771_35230794	0.620238	AGGUAGU	ENST00000342362.5|PRLR|ENSG00000113494.12|prolactin receptor
hg19_v2_chr6_-_35464727_35464738	0.609202	AGGUAGU	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr2_+_5832799_5832799	0.600299	AGGUAGU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr2_-_128615681_128615737	0.569577	AGGUAGU	ENST00000409955.1|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D 	ENST00000272645.4|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D
hg19_v2_chr9_-_127533519_127533576	0.568341	AGGUAGU	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr4_+_56212270_56212298	0.563522	AGGUAGU	ENST00000264228.4|SRD5A3|ENSG00000128039.6|steroid 5 alpha-reductase 3
hg19_v2_chr1_+_60280458_60280546	0.546426	AGGUAGU	ENST00000455990.1|HOOK1|ENSG00000134709.6|hook microtubule-tethering protein 1 	ENST00000371208.3|HOOK1|ENSG00000134709.6|hook microtubule-tethering protein 1
hg19_v2_chr14_-_81687197_81687280	0.536188	AGGUAGU	ENST00000553612.1|GTF2A1|ENSG00000165417.7|general transcription factor IIA, 1, 19/37kDa
hg19_v2_chr10_+_97803151_97803348	0.535839	AGGUAGU	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr7_-_98741642_98741713	0.516221	AGGUAGU	ENST00000361368.2|SMURF1|ENSG00000198742.5|SMAD specific E3 ubiquitin protein ligase 1
hg19_v2_chr7_-_27183263_27183287	0.501056	AGGUAGU	ENST00000222726.3|HOXA5|ENSG00000106004.4|homeobox A5
hg19_v2_chr17_+_28705921_28706000	0.485997	AGGUAGU	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chrX_-_41782249_41782287	0.482962	AGGUAGU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr6_+_134274322_134274342	0.466999	AGGUAGU	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr5_-_74326724_74326724	0.455126	AGGUAGU	ENST00000322348.4|GCNT4|ENSG00000176928.4|glucosaminyl (N-acetyl) transferase 4, core 2
hg19_v2_chr4_+_55095264_55095390	0.453902	AGGUAGU	ENST00000257290.5|PDGFRA|ENSG00000134853.7|platelet-derived growth factor receptor, alpha polypeptide
hg19_v2_chr3_-_48229846_48229918	0.444902	AGGUAGU	ENST00000302506.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000351231.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000437972.1|CDC25A|ENSG00000164045.7|cell division cycle 25A
hg19_v2_chr7_+_18535346_18535399	0.443407	AGGUAGU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr12_-_57400227_57400245	0.439414	AGGUAGU	ENST00000300101.2|ZBTB39|ENSG00000166860.2|zinc finger and BTB domain containing 39
hg19_v2_chr16_+_81348528_81348578	0.407359	AGGUAGU	ENST00000568107.2|GAN|ENSG00000261609.3|gigaxonin
hg19_v2_chr1_-_207224307_207224422	0.406441	AGGUAGU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr8_+_58907104_58907131	0.398851	AGGUAGU	ENST00000361488.3|FAM110B|ENSG00000169122.7|family with sequence similarity 110, member B
hg19_v2_chr22_+_39898325_39898382	0.394263	AGGUAGU	ENST00000325301.2|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1 	ENST00000404569.1|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1
hg19_v2_chr7_-_83824169_83824217	0.383521	AGGUAGU	ENST00000265362.4|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr1_-_205601064_205601090	0.380284	AGGUAGU	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr12_-_57472522_57472556	0.363465	AGGUAGU	ENST00000379391.3|TMEM194A|ENSG00000166881.5|transmembrane protein 194A 	ENST00000300128.4|TMEM194A|ENSG00000166881.5|transmembrane protein 194A
hg19_v2_chr19_+_531713_531748	0.361906	AGGUAGU	ENST00000215574.4|CDC34|ENSG00000099804.4|cell division cycle 34
hg19_v2_chr5_-_131347306_131347371	0.355915	AGGUAGU	ENST00000296869.4|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379249.3|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379272.2|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379264.2|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6
hg19_v2_chrX_+_48554986_48555164	0.351859	AGGUAGU	ENST00000376687.3|SUV39H1|ENSG00000101945.12|suppressor of variegation 3-9 homolog 1 (Drosophila) 	ENST00000453214.2|SUV39H1|ENSG00000101945.12|suppressor of variegation 3-9 homolog 1 (Drosophila)
hg19_v2_chr11_+_111945011_111945069	0.341518	AGGUAGU	ENST00000532163.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000280352.9|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000530104.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000526879.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000393047.3|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000525785.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57
hg19_v2_chr1_+_153232160_153232176	0.336874	AGGUAGU	ENST00000368742.3|LOR|ENSG00000203782.5|loricrin
hg19_v2_chr7_-_120498357_120498456	0.3359	AGGUAGU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr3_+_50712672_50712703	0.314585	AGGUAGU	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr8_-_110988070_110988087	0.289947	AGGUAGU	ENST00000524391.1|KCNV1|ENSG00000164794.4|potassium channel, subfamily V, member 1
hg19_v2_chr19_+_14063278_14063304	0.28909	AGGUAGU	ENST00000254337.6|DCAF15|ENSG00000132017.6|DDB1 and CUL4 associated factor 15
hg19_v2_chr9_-_79520989_79521003	0.283084	AGGUAGU	ENST00000376713.3|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila) 	ENST00000376718.3|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila) 	ENST00000428286.1|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila)
hg19_v2_chr3_-_53080047_53080103	0.270245	AGGUAGU	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chrX_+_2746850_2746863	0.230762	AGGUAGU	ENST00000381163.3|GYG2|ENSG00000056998.14|glycogenin 2 	ENST00000338623.5|GYG2|ENSG00000056998.14|glycogenin 2 	ENST00000542787.1|GYG2|ENSG00000056998.14|glycogenin 2
hg19_v2_chr1_+_113615794_113615884	0.226174	AGGUAGU	ENST00000361127.5|LRIG2|ENSG00000198799.7|leucine-rich repeats and immunoglobulin-like domains 2
hg19_v2_chr2_+_113239710_113239753	0.22328	AGGUAGU	ENST00000233336.6|TTL|ENSG00000114999.7|tubulin tyrosine ligase
hg19_v2_chr19_-_47975417_47975441	0.218624	AGGUAGU	ENST00000236877.6|SLC8A2|ENSG00000118160.9|solute carrier family 8 (sodium/calcium exchanger), member 2
hg19_v2_chr21_+_47878757_47879024	0.213903	AGGUAGU	ENST00000400274.1|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000427143.2|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000318711.7|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000457905.3|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000466639.1|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000435722.3|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000417564.2|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila)
hg19_v2_chr9_-_72287191_72287222	0.213301	AGGUAGU	ENST00000265381.4|APBA1|ENSG00000107282.5|amyloid beta (A4) precursor protein-binding, family A, member 1
hg19_v2_chr9_+_110045537_110045572	0.211962	AGGUAGU	ENST00000358015.3|RAD23B|ENSG00000119318.8|RAD23 homolog B (S. cerevisiae)
hg19_v2_chr15_-_50411412_50411437	0.20757	AGGUAGU	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr22_-_22221900_22221970	0.206231	AGGUAGU	ENST00000215832.6|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1 	ENST00000398822.3|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1
hg19_v2_chr1_-_92351769_92351787	0.206219	AGGUAGU	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr16_-_4166186_4166186	0.205042	AGGUAGU	ENST00000294016.3|ADCY9|ENSG00000162104.5|adenylate cyclase 9
hg19_v2_chr8_+_121137333_121137352	0.203883	AGGUAGU	ENST00000309791.4|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000297848.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000247781.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1
hg19_v2_chr6_-_86352642_86352709	0.202281	AGGUAGU	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr6_+_24403144_24403224	0.185333	AGGUAGU	ENST00000274747.7|MRS2|ENSG00000124532.10|MRS2 magnesium transporter 	ENST00000543597.1|MRS2|ENSG00000124532.10|MRS2 magnesium transporter 	ENST00000535061.1|MRS2|ENSG00000124532.10|MRS2 magnesium transporter 	ENST00000378353.1|MRS2|ENSG00000124532.10|MRS2 magnesium transporter 	ENST00000378386.3|MRS2|ENSG00000124532.10|MRS2 magnesium transporter 	ENST00000443868.2|MRS2|ENSG00000124532.10|MRS2 magnesium transporter
hg19_v2_chr20_-_32700075_32700138	0.177108	AGGUAGU	ENST00000374980.2|EIF2S2|ENSG00000125977.6|eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa
hg19_v2_chr12_-_29534074_29534127	0.167159	AGGUAGU	ENST00000546839.1|ERGIC2|ENSG00000087502.13|ERGIC and golgi 2 	ENST00000360150.4|ERGIC2|ENSG00000087502.13|ERGIC and golgi 2 	ENST00000552155.1|ERGIC2|ENSG00000087502.13|ERGIC and golgi 2 	ENST00000550353.1|ERGIC2|ENSG00000087502.13|ERGIC and golgi 2 	ENST00000548441.1|ERGIC2|ENSG00000087502.13|ERGIC and golgi 2 	ENST00000552132.1|ERGIC2|ENSG00000087502.13|ERGIC and golgi 2
hg19_v2_chr15_+_66994561_66994597	0.165075	AGGUAGU	ENST00000288840.5|SMAD6|ENSG00000137834.10|SMAD family member 6
hg19_v2_chr12_-_102874416_102874425	0.161518	AGGUAGU	ENST00000392904.1|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C) 	ENST00000337514.6|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C)
hg19_v2_chr17_+_8213590_8213603	0.158382	AGGUAGU	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr4_+_106473768_106473804	0.157493	AGGUAGU	ENST00000265154.2|ARHGEF38|ENSG00000236699.4|Rho guanine nucleotide exchange factor (GEF) 38 	ENST00000420470.2|ARHGEF38|ENSG00000236699.4|Rho guanine nucleotide exchange factor (GEF) 38
hg19_v2_chrX_+_49687216_49687265	0.153254	AGGUAGU	ENST00000376088.3|CLCN5|ENSG00000171365.11|chloride channel, voltage-sensitive 5
hg19_v2_chrX_-_77150985_77151090	0.149624	AGGUAGU	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr22_+_30279144_30279202	0.138738	AGGUAGU	ENST00000401950.2|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000333027.3|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000445401.1|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000323630.5|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000351488.3|MTMR3|ENSG00000100330.11|myotubularin related protein 3
hg19_v2_chr18_-_24445729_24445782	0.12788	AGGUAGU	ENST00000383168.4|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr6_+_133562472_133562556	0.122468	AGGUAGU	ENST00000430974.2|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000367895.5|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000355167.3|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000355286.6|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila)
hg19_v2_chr2_-_50574856_50574892	0.116562	AGGUAGU	ENST00000342183.5|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr21_+_30671189_30671207	0.115541	AGGUAGU	ENST00000286800.3|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr16_-_67840442_67840555	0.114763	AGGUAGU	ENST00000536251.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000448631.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000602677.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000411657.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000425512.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000317506.3|RANBP10|ENSG00000141084.6|RAN binding protein 10
hg19_v2_chr6_-_7313381_7313458	0.11098	AGGUAGU	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr7_+_35840542_35840671	0.109488	AGGUAGU	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr17_-_61850894_61851135	0.1069	AGGUAGU	ENST00000403162.3|CCDC47|ENSG00000108588.9|coiled-coil domain containing 47 	ENST00000582252.1|CCDC47|ENSG00000108588.9|coiled-coil domain containing 47 	ENST00000225726.5|CCDC47|ENSG00000108588.9|coiled-coil domain containing 47
hg19_v2_chr18_-_18691739_18691812	0.105933	AGGUAGU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr12_+_123868320_123868320	0.100307	AGGUAGU	ENST00000402868.3|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8 	ENST00000330479.4|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8
hg19_v2_chr21_-_39870339_39870443	0.0993392	AGGUAGU	ENST00000429727.2|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000398905.1|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000398907.1|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000453032.2|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000288319.7|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog
hg19_v2_chr7_-_27196267_27196311	0.0956076	AGGUAGU	ENST00000242159.3|HOXA7|ENSG00000122592.6|homeobox A7
hg19_v2_chr11_+_63870660_63870660	0.0937381	AGGUAGU	ENST00000246841.3|FLRT1|ENSG00000126500.3|fibronectin leucine rich transmembrane protein 1
hg19_v2_chr16_+_447209_447225	0.0822072	AGGUAGU	ENST00000382940.4|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4 	ENST00000219479.2|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4
hg19_v2_chr18_+_55711575_55711628	0.0796999	AGGUAGU	ENST00000356462.6|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000400345.3|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000589054.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000256832.7|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr16_+_70332956_70333130	0.0776415	AGGUAGU	ENST00000288071.6|DDX19B|ENSG00000157349.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 	ENST00000393657.2|DDX19B|ENSG00000157349.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 	ENST00000355992.3|DDX19B|ENSG00000157349.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 	ENST00000567706.1|RP11-529K1.3|ENSG00000260537.1|Uncharacterized protein
hg19_v2_chr7_-_75368248_75368265	0.0712766	AGGUAGU	ENST00000434438.2|HIP1|ENSG00000127946.12|huntingtin interacting protein 1 	ENST00000336926.6|HIP1|ENSG00000127946.12|huntingtin interacting protein 1
hg19_v2_chr2_+_60983361_60983418	0.0711677	AGGUAGU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr13_-_103053946_103054124	0.0690956	AGGUAGU	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr12_-_123450986_123451056	0.0684319	AGGUAGU	ENST00000344275.7|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000442833.2|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000280560.8|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000540285.1|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000346530.5|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9
hg19_v2_chr3_-_47823298_47823423	0.0606825	AGGUAGU	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr8_+_59465728_59465826	0.0510598	AGGUAGU	ENST00000260130.4|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000422546.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000447182.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000413219.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000424270.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000523483.1|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000520168.1|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin)
hg19_v2_chr6_+_4890226_4890276	0.0479779	AGGUAGU	ENST00000343762.5|CDYL|ENSG00000153046.13|chromodomain protein, Y-like
hg19_v2_chr14_-_34931458_34931562	0.0467864	AGGUAGU	ENST00000298130.4|SPTSSA|ENSG00000165389.6|serine palmitoyltransferase, small subunit A
hg19_v2_chr7_-_27205136_27205164	0.046356	AGGUAGU	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chr11_-_132813566_132813624	0.0454848	AGGUAGU	ENST00000331898.7|OPCML|ENSG00000183715.9|opioid binding protein/cell adhesion molecule-like
hg19_v2_chr16_-_12009735_12009793	0.0413424	AGGUAGU	ENST00000439887.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1 	ENST00000434724.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1
hg19_v2_chr8_+_81397876_81397902	0.0410601	AGGUAGU	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr2_+_160568978_160569064	0.0362634	AGGUAGU	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr14_+_72399833_72399952	0.0339837	AGGUAGU	ENST00000553530.1|RGS6|ENSG00000182732.12|regulator of G-protein signaling 6 	ENST00000556437.1|RGS6|ENSG00000182732.12|regulator of G-protein signaling 6
hg19_v2_chr17_+_30771279_30771536	0.0295853	AGGUAGU	ENST00000261712.3|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000578213.1|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000457654.2|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000579451.1|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
hg19_v2_chr6_-_94129244_94129284	0.0282298	AGGUAGU	ENST00000369303.4|EPHA7|ENSG00000135333.9|EPH receptor A7 	ENST00000369297.1|EPHA7|ENSG00000135333.9|EPH receptor A7
hg19_v2_chr5_-_153857819_153857824	0.0150831	AGGUAGU	ENST00000231121.2|HAND1|ENSG00000113196.2|heart and neural crest derivatives expressed 1
hg19_v2_chr16_+_29789561_29789606	0.0137374	AGGUAGU	ENST00000400752.4|ZG16|ENSG00000174992.6|zymogen granule protein 16
hg19_v2_chr16_+_70380732_70380819	0.00953214	AGGUAGU	ENST00000302243.7|DDX19A|ENSG00000168872.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A
hg19_v2_chr12_-_110318263_110318320	0.00338769	AGGUAGU	ENST00000318348.4|GLTP|ENSG00000139433.5|glycolipid transfer protein
hg19_v2_chr19_+_47104493_47104549	0.00272765	AGGUAGU	ENST00000291295.9|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000597743.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr10_-_38146510_38146576	0.00134895	AGGUAGU	ENST00000395867.3|ZNF248|ENSG00000198105.7|zinc finger protein 248
