hg19_v2_chr4_-_88450612_88450656	26.5123	AIRE	ENST00000418378.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin) 	ENST00000282470.6|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr6_-_31514333_31514414	16.0156	AIRE	ENST00000376151.4|ATP6V1G2|ENSG00000213760.6|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2
hg19_v2_chr4_-_57524061_57524074	15.3302	AIRE	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr6_-_31514516_31514625	13.4547	AIRE	ENST00000303892.5|ATP6V1G2|ENSG00000213760.6|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 	ENST00000483251.1|ATP6V1G2|ENSG00000213760.6|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2
hg19_v2_chr19_+_18208603_18208614	11.7257	AIRE	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr19_-_36643329_36643407	11.3576	AIRE	ENST00000589154.1|COX7A1|ENSG00000161281.6|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)
hg19_v2_chrM_+_12331_12348	10.9123	AIRE	ENST00000361567.2|MT-ND5|ENSG00000198786.2|mitochondrially encoded NADH dehydrogenase 5
hg19_v2_chr10_-_69597810_69597827	10.6644	AIRE	ENST00000483798.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr20_+_44036900_44036984	9.84906	AIRE	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr20_+_44036620_44036658	9.70903	AIRE	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr3_-_49466686_49466764	9.34037	AIRE	ENST00000273598.3|NICN1|ENSG00000145029.7|nicolin 1 	ENST00000436744.2|NICN1|ENSG00000145029.7|nicolin 1
hg19_v2_chr12_-_6580094_6580153	8.94593	AIRE	ENST00000361716.3|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1)
hg19_v2_chr17_+_41857793_41857814	7.98857	AIRE	ENST00000449302.3|C17orf105|ENSG00000231256.3|chromosome 17 open reading frame 105
hg19_v2_chr12_-_6579808_6579819	7.45466	AIRE	ENST00000535180.1|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1) 	ENST00000400911.3|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1)
hg19_v2_chr19_-_21950362_21950430	7.40581	AIRE	ENST00000358296.6|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr7_+_150498783_150498890	7.07011	AIRE	ENST00000475536.1|TMEM176A|ENSG00000002933.3|transmembrane protein 176A 	ENST00000468689.1|TMEM176A|ENSG00000002933.3|transmembrane protein 176A
hg19_v2_chr11_-_85376121_85376181	7.0505	AIRE	ENST00000527447.1|CREBZF|ENSG00000137504.9|CREB/ATF bZIP transcription factor
hg19_v2_chr19_+_45417921_45417970	6.95958	AIRE	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr9_-_70429731_70429731	6.80637	AIRE	ENST00000377413.1|FOXD4L4|ENSG00000184659.4|forkhead box D4-like 4
hg19_v2_chr7_+_20686946_20686966	6.70216	AIRE	ENST00000443026.2|ABCB5|ENSG00000004846.12|ATP-binding cassette, sub-family B (MDR/TAP), member 5 	ENST00000406935.1|ABCB5|ENSG00000004846.12|ATP-binding cassette, sub-family B (MDR/TAP), member 5
hg19_v2_chr9_+_42717234_42717234	6.53265	AIRE	ENST00000377590.1|FOXD4L2|ENSG00000204828.2|forkhead box D4-like 2
hg19_v2_chr7_-_36764004_36764059	6.25664	AIRE	ENST00000431169.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr7_-_137028534_137028611	6.19777	AIRE	ENST00000348225.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr9_-_113761720_113761756	6.13983	AIRE	ENST00000541779.1|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1 	ENST00000374430.2|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr19_+_45418067_45418126	6.09161	AIRE	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr19_+_45417812_45417869	5.8931	AIRE	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr7_-_137028498_137028520	5.6565	AIRE	ENST00000393083.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr7_-_36764142_36764157	5.58273	AIRE	ENST00000258749.5|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil) 	ENST00000535891.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr2_+_166150541_166150594	5.52457	AIRE	ENST00000283256.6|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr4_+_71587669_71587752	5.46763	AIRE	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr9_-_70178815_70178815	5.05371	AIRE	ENST00000377420.1|FOXD4L5|ENSG00000204779.2|forkhead box D4-like 5
hg19_v2_chr2_-_127977654_127977654	5.00128	AIRE	ENST00000409327.1|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr9_+_100615536_100615558	4.90116	AIRE	ENST00000375123.3|FOXE1|ENSG00000178919.7|forkhead box E1 (thyroid transcription factor 2)
hg19_v2_chr14_-_24911971_24912015	4.8368	AIRE	ENST00000555365.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1 	ENST00000399395.3|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr12_-_113772835_113772954	4.66372	AIRE	ENST00000552014.1|SLC8B1|ENSG00000089060.7|solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 	ENST00000548186.1|SLC8B1|ENSG00000089060.7|solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 	ENST00000202831.3|SLC8B1|ENSG00000089060.7|solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 	ENST00000549181.1|SLC8B1|ENSG00000089060.7|solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
hg19_v2_chr4_-_17513851_17513862	4.65789	AIRE	ENST00000281243.5|QDPR|ENSG00000151552.7|quinoid dihydropteridine reductase
hg19_v2_chr5_-_107703556_107703655	4.63352	AIRE	ENST00000496714.1|FBXL17|ENSG00000145743.11|F-box and leucine-rich repeat protein 17
hg19_v2_chr12_+_7282795_7283047	4.39803	AIRE	ENST00000266546.6|CLSTN3|ENSG00000139182.9|calsyntenin 3
hg19_v2_chr3_+_46412345_46412424	4.23224	AIRE	ENST00000292303.4|CCR5|ENSG00000160791.12|chemokine (C-C motif) receptor 5 (gene/pseudogene)
hg19_v2_chr22_+_36649170_36649207	4.0452	AIRE	ENST00000438034.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000427990.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000347595.7|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000397279.4|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000433768.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000440669.2|APOL1|ENSG00000100342.16|apolipoprotein L, 1
hg19_v2_chr21_+_39644214_39644219	4.04138	AIRE	ENST00000438657.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr14_-_24912047_24912064	3.67557	AIRE	ENST00000553930.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chrM_+_4431_4475	3.62517	AIRE	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr15_-_22448819_22448885	3.59224	AIRE	ENST00000604066.1|IGHV1OR15-1|ENSG00000270505.1|immunoglobulin heavy variable 1/OR15-1 (non-functional)
hg19_v2_chr21_+_39644305_39644351	3.55184	AIRE	ENST00000398930.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr22_+_25202232_25202286	3.54661	AIRE	ENST00000400358.4|SGSM1|ENSG00000167037.14|small G protein signaling modulator 1 	ENST00000400359.4|SGSM1|ENSG00000167037.14|small G protein signaling modulator 1
hg19_v2_chr4_-_186696425_186696452	3.54098	AIRE	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr3_+_193965426_193965445	3.45689	AIRE	ENST00000455821.1|RP11-513G11.3|ENSG00000238097.1|RP11-513G11.3
hg19_v2_chr17_-_38721711_38721730	3.4372	AIRE	ENST00000578085.1|CCR7|ENSG00000126353.3|chemokine (C-C motif) receptor 7 	ENST00000246657.2|CCR7|ENSG00000126353.3|chemokine (C-C motif) receptor 7
hg19_v2_chr12_+_20848486_20848542	3.22912	AIRE	ENST00000545102.1|SLCO1C1|ENSG00000139155.4|solute carrier organic anion transporter family, member 1C1
hg19_v2_chr16_+_56672571_56672587	3.11803	AIRE	ENST00000290705.8|MT1A|ENSG00000205362.6|metallothionein 1A
hg19_v2_chr2_-_225811747_225811796	3.04665	AIRE	ENST00000409592.3|DOCK10|ENSG00000135905.14|dedicator of cytokinesis 10
hg19_v2_chr3_+_189507460_189507471	3.02897	AIRE	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr19_-_36304201_36304201	2.82847	AIRE	ENST00000301175.3|PRODH2|ENSG00000250799.5|proline dehydrogenase (oxidase) 2
hg19_v2_chr16_+_3254247_3254247	2.80169	AIRE	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chr4_-_120243545_120243562	2.80124	AIRE	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr21_+_39644172_39644185	2.7916	AIRE	ENST00000398932.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr19_-_10491234_10491352	2.77243	AIRE	ENST00000524462.1|TYK2|ENSG00000105397.9|tyrosine kinase 2 	ENST00000531836.1|TYK2|ENSG00000105397.9|tyrosine kinase 2 	ENST00000525621.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr2_-_166060552_166060566	2.55713	AIRE	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr3_-_133648656_133648656	2.55108	AIRE	ENST00000408895.2|C3orf36|ENSG00000221972.2|chromosome 3 open reading frame 36
hg19_v2_chr16_+_14802801_14802801	2.52892	AIRE	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr21_-_44495964_44496055	2.40832	AIRE	ENST00000398168.1|CBS|ENSG00000160200.13|cystathionine-beta-synthase 	ENST00000398165.3|CBS|ENSG00000160200.13|cystathionine-beta-synthase
hg19_v2_chr7_-_15601595_15601657	2.4019	AIRE	ENST00000342526.3|AGMO|ENSG00000187546.9|alkylglycerol monooxygenase
hg19_v2_chr22_+_40322623_40322646	2.35604	AIRE	ENST00000399090.2|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2
hg19_v2_chr15_-_99789736_99789820	2.32761	AIRE	ENST00000560235.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394132.2|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000560860.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000558078.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394136.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000262074.4|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000558613.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394130.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000560772.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23
hg19_v2_chr12_+_12223867_12223883	2.28332	AIRE	ENST00000308721.5|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator)
hg19_v2_chr14_-_106967788_106967788	2.27985	AIRE	ENST00000390622.2|IGHV1-46|ENSG00000211962.2|immunoglobulin heavy variable 1-46
hg19_v2_chr1_+_206223941_206223976	2.24431	AIRE	ENST00000367126.4|AVPR1B|ENSG00000198049.5|arginine vasopressin receptor 1B
hg19_v2_chr2_-_166060571_166060582	2.17985	AIRE	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr22_+_40322595_40322618	2.13336	AIRE	ENST00000420971.1|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2 	ENST00000544756.1|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2
hg19_v2_chr9_-_104198042_104198105	2.09144	AIRE	ENST00000374855.4|ALDOB|ENSG00000136872.13|aldolase B, fructose-bisphosphate
hg19_v2_chr13_-_26795840_26795995	2.07559	AIRE	ENST00000381570.3|RNF6|ENSG00000127870.12|ring finger protein (C3H2C3 type) 6 	ENST00000399762.2|RNF6|ENSG00000127870.12|ring finger protein (C3H2C3 type) 6 	ENST00000346166.3|RNF6|ENSG00000127870.12|ring finger protein (C3H2C3 type) 6
hg19_v2_chr15_+_27112948_27113033	2.05952	AIRE	ENST00000555060.1|GABRA5|ENSG00000186297.7|gamma-aminobutyric acid (GABA) A receptor, alpha 5
hg19_v2_chr11_+_6947647_6947698	2.04281	AIRE	ENST00000278319.5|ZNF215|ENSG00000149054.10|zinc finger protein 215
hg19_v2_chr12_-_6579833_6579850	1.96915	AIRE	ENST00000396308.3|VAMP1|ENSG00000139190.12|vesicle-associated membrane protein 1 (synaptobrevin 1)
hg19_v2_chr11_+_64794875_64794983	1.94506	AIRE	ENST00000377244.3|SNX15|ENSG00000110025.8|sorting nexin 15 	ENST00000534637.1|SNX15|ENSG00000110025.8|sorting nexin 15 	ENST00000524831.1|SNX15|ENSG00000110025.8|sorting nexin 15
hg19_v2_chr14_-_106668095_106668116	1.93376	AIRE	ENST00000390606.2|IGHV3-20|ENSG00000211946.2|immunoglobulin heavy variable 3-20
hg19_v2_chrX_-_153191674_153191701	1.93332	AIRE	ENST00000350060.5|ARHGAP4|ENSG00000089820.11|Rho GTPase activating protein 4 	ENST00000370016.1|ARHGAP4|ENSG00000089820.11|Rho GTPase activating protein 4
hg19_v2_chr12_-_15038779_15038860	1.93279	AIRE	ENST00000228938.5|MGP|ENSG00000111341.5|matrix Gla protein 	ENST00000539261.1|MGP|ENSG00000111341.5|matrix Gla protein
hg19_v2_chr1_+_207669573_207669606	1.90596	AIRE	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr11_-_8954491_8954536	1.8299	AIRE	ENST00000526227.1|C11orf16|ENSG00000176029.9|chromosome 11 open reading frame 16 	ENST00000525780.1|C11orf16|ENSG00000176029.9|chromosome 11 open reading frame 16 	ENST00000326053.5|C11orf16|ENSG00000176029.9|chromosome 11 open reading frame 16
hg19_v2_chr19_-_59084922_59084947	1.8054	AIRE	ENST00000215057.2|MZF1|ENSG00000099326.4|myeloid zinc finger 1 	ENST00000599369.1|MZF1|ENSG00000099326.4|myeloid zinc finger 1
hg19_v2_chr16_+_72088376_72088537	1.77886	AIRE	ENST00000570083.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000355906.5|HP|ENSG00000257017.4|haptoglobin 	ENST00000398131.2|HP|ENSG00000257017.4|haptoglobin 	ENST00000569639.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000356967.5|HPR|ENSG00000261701.2|haptoglobin-related protein 	ENST00000564499.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000357763.4|HP|ENSG00000257017.4|haptoglobin 	ENST00000562526.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000565574.1|HP|ENSG00000257017.4|haptoglobin 	ENST00000568417.2|HP|ENSG00000257017.4|haptoglobin
hg19_v2_chr20_-_43150601_43150751	1.75844	AIRE	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr20_+_44637526_44637554	1.75012	AIRE	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr21_+_39644395_39644454	1.74771	AIRE	ENST00000398934.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr4_+_76649797_76650004	1.72295	AIRE	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr8_+_105352050_105352056	1.61571	AIRE	ENST00000297581.2|DCSTAMP|ENSG00000164935.2|dendrocyte expressed seven transmembrane protein
hg19_v2_chr1_+_207669613_207669686	1.59654	AIRE	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr1_-_161208013_161208092	1.58923	AIRE	ENST00000515452.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367983.4|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr1_-_167883327_167883352	1.53729	AIRE	ENST00000476818.2|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367851.4|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367848.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chrX_-_100307076_100307107	1.51994	AIRE	ENST00000338687.7|TRMT2B|ENSG00000188917.10|tRNA methyltransferase 2 homolog B (S. cerevisiae) 	ENST00000545398.1|TRMT2B|ENSG00000188917.10|tRNA methyltransferase 2 homolog B (S. cerevisiae) 	ENST00000372931.5|TRMT2B|ENSG00000188917.10|tRNA methyltransferase 2 homolog B (S. cerevisiae)
hg19_v2_chr18_+_39766626_39766668	1.50639	AIRE	ENST00000593234.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585627.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591199.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000586990.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593051.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593316.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591381.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585639.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000589068.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907
hg19_v2_chr2_+_204732487_204732521	1.45624	AIRE	ENST00000302823.3|CTLA4|ENSG00000163599.10|cytotoxic T-lymphocyte-associated protein 4
hg19_v2_chr6_+_167525277_167525295	1.45058	AIRE	ENST00000400926.2|CCR6|ENSG00000112486.10|chemokine (C-C motif) receptor 6
hg19_v2_chrX_-_100307043_100307072	1.43329	AIRE	ENST00000372939.1|TRMT2B|ENSG00000188917.10|tRNA methyltransferase 2 homolog B (S. cerevisiae) 	ENST00000372935.1|TRMT2B|ENSG00000188917.10|tRNA methyltransferase 2 homolog B (S. cerevisiae) 	ENST00000372936.3|TRMT2B|ENSG00000188917.10|tRNA methyltransferase 2 homolog B (S. cerevisiae)
hg19_v2_chr2_+_1417228_1417252	1.37614	AIRE	ENST00000382269.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000337415.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000345913.4|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000346956.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000349624.3|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000539820.1|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000329066.4|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000382201.3|TPO|ENSG00000115705.16|thyroid peroxidase
hg19_v2_chr1_-_35497506_35497574	1.34669	AIRE	ENST00000317538.5|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6 	ENST00000373340.2|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6 	ENST00000357182.4|ZMYM6|ENSG00000163867.12|zinc finger, MYM-type 6
hg19_v2_chrX_-_101694853_101694853	1.31752	AIRE	ENST00000372749.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B
hg19_v2_chr16_-_29499154_29499154	1.28981	AIRE	ENST00000354563.5|RP11-231C14.4|ENSG00000169203.12|Uncharacterized protein
hg19_v2_chr4_+_71588372_71588404	1.27053	AIRE	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr12_-_11463353_11463372	1.22667	AIRE	ENST00000279575.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000535904.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000445719.2|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4
hg19_v2_chr8_-_16043780_16043783	1.21479	AIRE	ENST00000445506.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr13_-_46756351_46756459	1.17377	AIRE	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr2_-_208994548_208994554	1.16911	AIRE	ENST00000282141.3|CRYGC|ENSG00000163254.4|crystallin, gamma C
hg19_v2_chrX_-_153191708_153191767	1.16904	AIRE	ENST00000393721.1|ARHGAP4|ENSG00000089820.11|Rho GTPase activating protein 4 	ENST00000370028.3|ARHGAP4|ENSG00000089820.11|Rho GTPase activating protein 4
hg19_v2_chr21_-_44495919_44495953	1.12998	AIRE	ENST00000398158.1|CBS|ENSG00000160200.13|cystathionine-beta-synthase
hg19_v2_chr3_-_121468602_121468617	1.09959	AIRE	ENST00000340645.5|GOLGB1|ENSG00000173230.11|golgin B1
hg19_v2_chr9_+_90112117_90112164	1.04465	AIRE	ENST00000358077.5|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr1_-_52344471_52344481	1.00015	AIRE	ENST00000352171.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase) 	ENST00000354831.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase)
hg19_v2_chr14_-_107283278_107283282	0.92757	AIRE	ENST00000390639.2|IGHV7-81|ENSG00000211979.2|immunoglobulin heavy variable 7-81 (non-functional)
hg19_v2_chr9_+_71986182_71986182	0.914585	AIRE	ENST00000303068.7|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr9_+_117904097_117904097	0.885379	AIRE	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr14_+_58894706_58894720	0.851835	AIRE	ENST00000261244.5|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr12_+_12224331_12224402	0.844091	AIRE	ENST00000396367.1|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator) 	ENST00000266434.4|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator) 	ENST00000396369.1|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator)
hg19_v2_chr22_-_32767017_32767063	0.832849	AIRE	ENST00000400234.1|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr12_+_12202774_12202780	0.741268	AIRE	ENST00000589718.1|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator)
hg19_v2_chr15_+_52043758_52043809	0.634656	AIRE	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr2_+_62423242_62423288	0.588584	AIRE	ENST00000301998.4|B3GNT2|ENSG00000170340.10|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
hg19_v2_chr12_-_25101920_25102077	0.581958	AIRE	ENST00000539780.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic 	ENST00000546285.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic 	ENST00000342945.5|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr17_+_3323862_3323862	0.547579	AIRE	ENST00000291231.1|OR3A3|ENSG00000159961.1|olfactory receptor, family 3, subfamily A, member 3
hg19_v2_chr3_-_121468513_121468599	0.488636	AIRE	ENST00000494517.1|GOLGB1|ENSG00000173230.11|golgin B1 	ENST00000393667.3|GOLGB1|ENSG00000173230.11|golgin B1
hg19_v2_chr12_+_12202785_12202802	0.448381	AIRE	ENST00000586576.1|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator) 	ENST00000464885.2|BCL2L14|ENSG00000121380.8|BCL2-like 14 (apoptosis facilitator)
hg19_v2_chr19_-_48753104_48753123	0.428446	AIRE	ENST00000447740.2|CARD8|ENSG00000105483.12|caspase recruitment domain family, member 8
hg19_v2_chr11_+_30252549_30252565	0.409358	AIRE	ENST00000254122.3|FSHB|ENSG00000131808.6|follicle stimulating hormone, beta polypeptide 	ENST00000417547.1|FSHB|ENSG00000131808.6|follicle stimulating hormone, beta polypeptide
hg19_v2_chr11_-_5173599_5173599	0.406049	AIRE	ENST00000328942.1|OR52A1|ENSG00000182070.4|olfactory receptor, family 52, subfamily A, member 1
hg19_v2_chr14_+_21236586_21236600	0.398866	AIRE	ENST00000326783.3|EDDM3B|ENSG00000181552.3|epididymal protein 3B
hg19_v2_chr19_-_52551814_52552023	0.38098	AIRE	ENST00000594154.1|ZNF432|ENSG00000256087.2|zinc finger protein 432 	ENST00000598745.1|ZNF432|ENSG00000256087.2|zinc finger protein 432 	ENST00000597273.1|ZNF432|ENSG00000256087.2|zinc finger protein 432
hg19_v2_chr4_-_123843597_123843766	0.335615	AIRE	ENST00000510735.1|NUDT6|ENSG00000170917.9|nudix (nucleoside diphosphate linked moiety X)-type motif 6 	ENST00000304430.5|NUDT6|ENSG00000170917.9|nudix (nucleoside diphosphate linked moiety X)-type motif 6
hg19_v2_chr5_+_32788945_32788945	0.272315	AIRE	ENST00000326958.1|AC026703.1|ENSG00000181495.1|AC026703.1
hg19_v2_chr1_+_152627927_152627953	0.198588	AIRE	ENST00000444515.1|LINC00302|ENSG00000176075.6|long intergenic non-protein coding RNA 302 	ENST00000536536.1|LINC00302|ENSG00000176075.6|long intergenic non-protein coding RNA 302
hg19_v2_chr1_-_158300747_158300815	0.167664	AIRE	ENST00000451207.1|CD1B|ENSG00000158485.6|CD1b molecule
hg19_v2_chr19_-_23869999_23870022	0.159508	AIRE	ENST00000601935.1|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000359788.4|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000600313.1|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000596211.1|ZNF675|ENSG00000197372.5|zinc finger protein 675 	ENST00000599168.1|ZNF675|ENSG00000197372.5|zinc finger protein 675
hg19_v2_chr1_+_47603109_47603127	0.151806	AIRE	ENST00000371890.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000294337.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000371891.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22
hg19_v2_chr1_-_52456352_52456436	0.0781409	AIRE	ENST00000371655.3|RAB3B|ENSG00000169213.6|RAB3B, member RAS oncogene family
hg19_v2_chr6_-_32806506_32806599	0.0717415	AIRE	ENST00000374897.2|TAP2|ENSG00000204267.9|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 	ENST00000452392.2|TAP2|ENSG00000250264.1|Uncharacterized protein
hg19_v2_chr6_+_26538566_26538647	0.062303	AIRE	ENST00000377575.2|HMGN4|ENSG00000182952.4|high mobility group nucleosomal binding domain 4
hg19_v2_chr19_-_48752812_48752925	0.0511074	AIRE	ENST00000359009.4|CARD8|ENSG00000105483.12|caspase recruitment domain family, member 8
hg19_v2_chr22_+_36649056_36649164	0.0149424	AIRE	ENST00000397278.3|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000422706.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000426053.1|APOL1|ENSG00000100342.16|apolipoprotein L, 1 	ENST00000319136.4|APOL1|ENSG00000100342.16|apolipoprotein L, 1
