hg19_v2_chr14_-_60097524_60097538	6.64785	BRCA1	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr14_-_60097297_60097403	6.07415	BRCA1	ENST00000395090.1|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr1_+_10271674_10271674	5.25397	BRCA1	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr6_+_123100620_123100763	4.56429	BRCA1	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr8_-_81083341_81083435	4.2376	BRCA1	ENST00000519303.2|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr5_-_68665084_68665143	3.55892	BRCA1	ENST00000509462.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr2_+_223725652_223725705	3.54064	BRCA1	ENST00000357430.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3 	ENST00000392066.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3
hg19_v2_chr1_-_170043709_170043874	3.24194	BRCA1	ENST00000367767.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000361580.2|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000538366.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3
hg19_v2_chr5_+_140186647_140186773	3.15308	BRCA1	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr1_+_159141397_159141549	2.39162	BRCA1	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr5_-_68665469_68665490	2.28297	BRCA1	ENST00000217893.5|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr6_+_42981922_42982047	2.25168	BRCA1	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr7_-_23510086_23510118	2.16208	BRCA1	ENST00000258729.3|IGF2BP3|ENSG00000136231.9|insulin-like growth factor 2 mRNA binding protein 3
hg19_v2_chr5_-_68665296_68665381	2.08822	BRCA1	ENST00000512152.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000503245.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000512561.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000380822.4|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr11_+_117947724_117947753	2.08442	BRCA1	ENST00000534111.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4
hg19_v2_chr11_+_117947782_117947845	2.03427	BRCA1	ENST00000522307.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000523251.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000437212.3|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000522824.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000522151.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4
hg19_v2_chr3_-_127455200_127455223	1.87931	BRCA1	ENST00000398101.3|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr4_-_48782259_48782335	1.80145	BRCA1	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr18_-_49557_49557	1.73239	BRCA1	ENST00000308911.6|RP11-683L23.1|ENSG00000173213.7|Tubulin beta-8 chain-like protein LOC260334
hg19_v2_chr3_-_176914238_176914277	1.72454	BRCA1	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr11_-_71823266_71823325	1.70567	BRCA1	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr12_-_12491608_12491640	1.50336	BRCA1	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr7_+_73868439_73868450	1.32382	BRCA1	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr1_-_173020056_173020103	1.28385	BRCA1	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr1_-_227505289_227505415	1.28365	BRCA1	ENST00000366765.3|CDC42BPA|ENSG00000143776.14|CDC42 binding protein kinase alpha (DMPK-like)
hg19_v2_chr13_-_31038370_31038509	1.27028	BRCA1	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr13_+_30002846_30002862	1.24544	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr10_+_92631709_92631746	1.2128	BRCA1	ENST00000413330.1|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit 	ENST00000277882.3|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit
hg19_v2_chr19_+_45394477_45394546	1.19904	BRCA1	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chrX_-_10851762_10851782	1.15913	BRCA1	ENST00000380785.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome) 	ENST00000380787.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr17_-_41738931_41739040	1.15831	BRCA1	ENST00000329168.3|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000549132.1|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chrX_+_10124977_10125036	1.15253	BRCA1	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr11_-_27722021_27722038	1.13185	BRCA1	ENST00000356660.4|BDNF|ENSG00000176697.14|brain-derived neurotrophic factor 	ENST00000418212.1|BDNF|ENSG00000176697.14|brain-derived neurotrophic factor 	ENST00000533246.1|BDNF|ENSG00000176697.14|brain-derived neurotrophic factor
hg19_v2_chr8_-_116681221_116681236	1.07333	BRCA1	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr20_-_48530230_48530276	1.04748	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr17_+_74372662_74372742	1.03108	BRCA1	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr10_+_28822636_28822692	0.970479	BRCA1	ENST00000442148.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil 	ENST00000448193.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil
hg19_v2_chr10_-_102289611_102289757	0.954749	BRCA1	ENST00000299166.4|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000370320.4|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000535773.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000531258.1|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000370322.1|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
hg19_v2_chr14_-_75179774_75179818	0.921297	BRCA1	ENST00000555249.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000556202.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000338772.5|AC007956.1|ENSG00000214670.3|Full-length cDNA 5-PRIME end of clone CS0CAP004YO05 of Thymus of Homo sapiens (human); Uncharacterized protein  	ENST00000356357.4|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1
hg19_v2_chr10_-_69597810_69597827	0.895553	BRCA1	ENST00000483798.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr20_+_9049682_9049710	0.850293	BRCA1	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr8_+_22462532_22462597	0.810535	BRCA1	ENST00000389279.3|CCAR2|ENSG00000158941.12|cell cycle and apoptosis regulator 2
hg19_v2_chr18_-_23671139_23671190	0.770716	BRCA1	ENST00000579061.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000542420.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr6_-_42981651_42981706	0.766517	BRCA1	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr2_-_152118352_152118393	0.766472	BRCA1	ENST00000331426.5|RBM43|ENSG00000184898.6|RNA binding motif protein 43
hg19_v2_chr15_-_88799948_88799978	0.743283	BRCA1	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr10_-_95209_95241	0.737968	BRCA1	ENST00000332708.5|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII 	ENST00000309812.4|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr17_-_7082861_7082883	0.665048	BRCA1	ENST00000269299.3|ASGR1|ENSG00000141505.7|asialoglycoprotein receptor 1
hg19_v2_chr15_+_67430339_67430366	0.63595	BRCA1	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr10_-_61900762_61900779	0.62647	BRCA1	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr17_-_41739283_41739322	0.585259	BRCA1	ENST00000393661.2|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000318579.4|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr17_-_42019836_42019844	0.502426	BRCA1	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr1_-_160232312_160232323	0.501306	BRCA1	ENST00000440682.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr19_+_46850320_46850365	0.493977	BRCA1	ENST00000391919.1|PPP5C|ENSG00000011485.10|protein phosphatase 5, catalytic subunit
hg19_v2_chr14_+_32030582_32030661	0.493128	BRCA1	ENST00000550649.1|NUBPL|ENSG00000151413.12|nucleotide binding protein-like 	ENST00000281081.7|NUBPL|ENSG00000151413.12|nucleotide binding protein-like
hg19_v2_chr18_+_55888767_55888809	0.485588	BRCA1	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr8_-_16859690_16859861	0.482322	BRCA1	ENST00000180166.5|FGF20|ENSG00000078579.8|fibroblast growth factor 20
hg19_v2_chr17_-_60142609_60142657	0.459714	BRCA1	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr1_-_217250231_217250349	0.421802	BRCA1	ENST00000493748.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000463665.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr19_+_46850251_46850285	0.413764	BRCA1	ENST00000012443.4|PPP5C|ENSG00000011485.10|protein phosphatase 5, catalytic subunit
hg19_v2_chr4_-_140005443_140005650	0.396731	BRCA1	ENST00000510408.1|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000420916.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000358635.3|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr10_-_95504_95504	0.340956	BRCA1	ENST00000447903.2|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr1_+_63063152_63063163	0.294626	BRCA1	ENST00000371129.3|ANGPTL3|ENSG00000132855.4|angiopoietin-like 3
hg19_v2_chr3_+_185303962_185304021	0.287218	BRCA1	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr5_+_139493665_139493718	0.257936	BRCA1	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr17_+_21730180_21730256	0.225867	BRCA1	ENST00000584398.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr12_-_117318788_117318893	0.192651	BRCA1	ENST00000550505.1|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr12_-_117319236_117319252	0.174134	BRCA1	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr4_+_619347_619382	0.164551	BRCA1	ENST00000255622.6|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr11_+_47291645_47291727	0.163523	BRCA1	ENST00000395336.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402192.2|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chrX_+_49644470_49644470	0.126346	BRCA1	ENST00000508866.2|USP27X|ENSG00000242013.4|ubiquitin specific peptidase 27, X-linked
hg19_v2_chr9_+_35792151_35792151	0.10873	BRCA1	ENST00000342694.2|NPR2|ENSG00000159899.10|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)
hg19_v2_chr13_-_50018140_50018221	0.0840392	BRCA1	ENST00000410043.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000347776.5|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr13_+_30002741_30002776	0.0734823	BRCA1	ENST00000380808.2|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr20_-_34025999_34026045	0.053571	BRCA1	ENST00000374369.3|GDF5|ENSG00000125965.4|growth differentiation factor 5
hg19_v2_chr13_-_50018241_50018277	0.0527167	BRCA1	ENST00000409308.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr17_-_56296580_56296666	0.04563	BRCA1	ENST00000313863.6|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000546108.1|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000337050.7|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000393119.2|MKS1|ENSG00000011143.12|Meckel syndrome, type 1
hg19_v2_chr11_+_47291193_47291267	0.0245754	BRCA1	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr7_-_99716952_99717021	0.0237955	BRCA1	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_-_160232291_160232304	0.00727116	BRCA1	ENST00000368074.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000447377.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
