hg19_v2_chr5_-_136834982_136835037	1.54187	CUACAGU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr16_+_58497567_58497586	1.23595	CUACAGU	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr3_-_114790179_114790222	0.833266	CUACAGU	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr3_-_123603137_123603203	0.778143	CUACAGU	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_+_158991025_158991083	0.681195	CUACAGU	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr3_+_159557637_159557650	0.634842	CUACAGU	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr1_-_225840747_225840860	0.55175	CUACAGU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr15_+_39873268_39873294	0.475127	CUACAGU	ENST00000397591.2|THBS1|ENSG00000137801.9|thrombospondin 1 	ENST00000260356.5|THBS1|ENSG00000137801.9|thrombospondin 1
hg19_v2_chr19_+_10527449_10527619	0.454098	CUACAGU	ENST00000592685.1|PDE4A|ENSG00000065989.11|phosphodiesterase 4A, cAMP-specific 	ENST00000380702.2|PDE4A|ENSG00000065989.11|phosphodiesterase 4A, cAMP-specific
hg19_v2_chr9_-_14314066_14314075	0.390745	CUACAGU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr2_+_113033164_113033219	0.385792	CUACAGU	ENST00000409871.1|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6 	ENST00000343936.4|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6
hg19_v2_chr9_-_101471479_101471522	0.377191	CUACAGU	ENST00000259455.2|GABBR2|ENSG00000136928.4|gamma-aminobutyric acid (GABA) B receptor, 2
hg19_v2_chr11_-_95657231_95657459	0.331386	CUACAGU	ENST00000409459.1|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000352297.7|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000393223.3|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000346299.5|MTMR2|ENSG00000087053.14|myotubularin related protein 2
hg19_v2_chr17_-_78450398_78450413	0.325585	CUACAGU	ENST00000306773.4|NPTX1|ENSG00000171246.5|neuronal pentraxin I
hg19_v2_chr10_-_735553_735683	0.291537	CUACAGU	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr3_-_124774802_124774852	0.28585	CUACAGU	ENST00000311127.4|HEG1|ENSG00000173706.8|heart development protein with EGF-like domains 1
hg19_v2_chrX_-_33146477_33146521	0.277106	CUACAGU	ENST00000378677.2|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr2_-_38604398_38604436	0.270891	CUACAGU	ENST00000443098.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000449130.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000378954.4|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000539122.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000419554.2|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000451483.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000406122.1|ATL2|ENSG00000119787.9|atlastin GTPase 2
hg19_v2_chr15_-_77363513_77363570	0.252601	CUACAGU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr4_+_113970772_113970885	0.248091	CUACAGU	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr3_-_98620500_98620547	0.24578	CUACAGU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr8_-_67525473_67525518	0.229612	CUACAGU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr16_-_10674528_10674555	0.220664	CUACAGU	ENST00000359543.3|EMP2|ENSG00000213853.5|epithelial membrane protein 2
hg19_v2_chr2_-_11484710_11484812	0.218217	CUACAGU	ENST00000315872.6|ROCK2|ENSG00000134318.9|Rho-associated, coiled-coil containing protein kinase 2
hg19_v2_chr1_+_29563011_29563151	0.213466	CUACAGU	ENST00000345512.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000373779.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000356870.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000323874.8|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000428026.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000460170.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U
hg19_v2_chr1_-_175712829_175712906	0.198211	CUACAGU	ENST00000367674.2|TNR|ENSG00000116147.12|tenascin R
hg19_v2_chr20_-_48099182_48099214	0.185026	CUACAGU	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr10_-_99393242_99393344	0.171718	CUACAGU	ENST00000370635.3|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000478953.1|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000335628.3|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr15_-_37390482_37390572	0.14747	CUACAGU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr5_+_149109825_149109907	0.144545	CUACAGU	ENST00000360453.4|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000394320.3|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000309241.5|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta
hg19_v2_chr1_+_87794150_87794172	0.138567	CUACAGU	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr17_+_64298944_64298944	0.128138	CUACAGU	ENST00000413366.3|PRKCA|ENSG00000154229.7|protein kinase C, alpha
hg19_v2_chr11_+_92085262_92085262	0.127686	CUACAGU	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr3_-_129407535_129407575	0.127487	CUACAGU	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chrX_+_146993449_146993498	0.125086	CUACAGU	ENST00000218200.8|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370471.3|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370477.1|FMR1|ENSG00000102081.9|fragile X mental retardation 1
hg19_v2_chr10_-_11653753_11653806	0.121679	CUACAGU	ENST00000609104.1|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr5_-_132073210_132073330	0.115841	CUACAGU	ENST00000378735.1|KIF3A|ENSG00000131437.11|kinesin family member 3A 	ENST00000378746.4|KIF3A|ENSG00000131437.11|kinesin family member 3A
hg19_v2_chr18_+_3451646_3451722	0.112497	CUACAGU	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr10_-_70287231_70287290	0.111652	CUACAGU	ENST00000609923.1|SLC25A16|ENSG00000122912.10|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
hg19_v2_chr5_+_15500280_15500312	0.109311	CUACAGU	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr5_-_114598548_114598579	0.108294	CUACAGU	ENST00000379615.3|PGGT1B|ENSG00000164219.5|protein geranylgeranyltransferase type I, beta subunit 	ENST00000419445.1|PGGT1B|ENSG00000164219.5|protein geranylgeranyltransferase type I, beta subunit
hg19_v2_chr6_+_37787262_37787291	0.103562	CUACAGU	ENST00000287218.4|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr1_-_72748417_72748510	0.0970214	CUACAGU	ENST00000357731.5|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr7_+_77325738_77325789	0.0842171	CUACAGU	ENST00000334955.8|RSBN1L|ENSG00000187257.10|round spermatid basic protein 1-like
hg19_v2_chr2_-_166930131_166930149	0.0815074	CUACAGU	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr7_-_56119238_56119302	0.0804037	CUACAGU	ENST00000275605.3|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000395471.3|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr15_-_79383102_79383127	0.0777536	CUACAGU	ENST00000558480.2|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1 	ENST00000419573.3|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1
hg19_v2_chr18_+_55018044_55018044	0.0773077	CUACAGU	ENST00000324000.3|ST8SIA3|ENSG00000177511.5|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
hg19_v2_chrX_+_16804544_16804613	0.0701371	CUACAGU	ENST00000380122.5|TXLNG|ENSG00000086712.8|taxilin gamma 	ENST00000398155.4|TXLNG|ENSG00000086712.8|taxilin gamma
hg19_v2_chr8_+_61591337_61591393	0.0670949	CUACAGU	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr5_-_59189545_59189625	0.066578	CUACAGU	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr1_-_85156216_85156240	0.06437	CUACAGU	ENST00000342203.3|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein 	ENST00000370612.4|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr5_-_114961858_114961876	0.0637249	CUACAGU	ENST00000282382.4|TMED7-TICAM2|ENSG00000251201.4|TMED7-TICAM2 readthrough 	ENST00000456936.3|TMED7|ENSG00000134970.13|transmembrane emp24 protein transport domain containing 7 	ENST00000408996.4|TICAM2|ENSG00000243414.4|toll-like receptor adaptor molecule 2
hg19_v2_chr1_-_21671968_21672009	0.0577293	CUACAGU	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr2_-_69870835_69870853	0.0565874	CUACAGU	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr4_+_77870856_77870919	0.0532845	CUACAGU	ENST00000264893.6|SEPT11|ENSG00000138758.7|septin 11 	ENST00000502584.1|SEPT11|ENSG00000138758.7|septin 11 	ENST00000510641.1|SEPT11|ENSG00000138758.7|septin 11
hg19_v2_chr11_+_86748863_86748948	0.0529491	CUACAGU	ENST00000340353.7|TMEM135|ENSG00000166575.12|transmembrane protein 135
hg19_v2_chr12_+_26348429_26348525	0.049716	CUACAGU	ENST00000242729.2|SSPN|ENSG00000123096.7|sarcospan
hg19_v2_chr2_+_27070964_27071027	0.0495213	CUACAGU	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr3_-_160283348_160283376	0.0478624	CUACAGU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr6_-_8064567_8064652	0.0447871	CUACAGU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr21_-_36260980_36261011	0.0428784	CUACAGU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr1_-_155532484_155532605	0.0394859	CUACAGU	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr8_-_105601134_105601252	0.0378846	CUACAGU	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr10_+_31608054_31608156	0.0348004	CUACAGU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr7_-_138666053_138666146	0.0335054	CUACAGU	ENST00000440172.1|KIAA1549|ENSG00000122778.5|KIAA1549 	ENST00000422774.1|KIAA1549|ENSG00000122778.5|KIAA1549
hg19_v2_chr4_-_99579733_99579789	0.0280943	CUACAGU	ENST00000305798.3|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr11_+_129939779_129939801	0.0278641	CUACAGU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr9_+_77112244_77112281	0.0233296	CUACAGU	ENST00000376896.3|RORB|ENSG00000198963.6|RAR-related orphan receptor B
hg19_v2_chr1_+_37940153_37940190	0.0214789	CUACAGU	ENST00000373087.6|ZC3H12A|ENSG00000163874.8|zinc finger CCCH-type containing 12A
hg19_v2_chr18_-_53255766_53255860	0.0162265	CUACAGU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr20_-_4982132_4982164	0.0143291	CUACAGU	ENST00000338244.1|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2 	ENST00000424750.2|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2
hg19_v2_chr6_-_16761678_16761721	0.014225	CUACAGU	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr13_-_21476900_21476949	0.012573	CUACAGU	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chr12_+_123868320_123868320	0.00903036	CUACAGU	ENST00000402868.3|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8 	ENST00000330479.4|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8
hg19_v2_chr3_-_116164306_116164380	0.0086999	CUACAGU	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr12_+_57998595_57998621	0.00726506	CUACAGU	ENST00000337737.3|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000548198.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000551632.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila)
hg19_v2_chr18_+_49866496_49866548	0.00440506	CUACAGU	ENST00000442544.2|DCC|ENSG00000187323.7|deleted in colorectal carcinoma
hg19_v2_chr5_-_133561752_133561833	0.000358268	CUACAGU	ENST00000519718.1|CTD-2410N18.5|ENSG00000272772.1|S-phase kinase-associated protein 1  	ENST00000481195.1|PPP2CA|ENSG00000113575.5|protein phosphatase 2, catalytic subunit, alpha isozyme
