hg19_v2_chr17_-_26695013_26695033	11.4462	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr17_-_26694979_26695007	11.3667	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr11_-_116708302_116708347	10.4206	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr11_+_62186498_62186515	8.85968	FOXA3_FOXC2	ENST00000278282.2|SCGB1A1|ENSG00000149021.2|secretoglobin, family 1A, member 1 (uteroglobin)
hg19_v2_chr12_-_92539614_92539673	8.82788	FOXA3_FOXC2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr17_-_39684550_39684567	8.01243	FOXA3_FOXC2	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr10_+_71561649_71561703	6.60873	FOXA3_FOXC2	ENST00000398978.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000354547.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000357811.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr4_-_174256276_174256303	6.20378	FOXA3_FOXC2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr14_-_36988882_36988898	5.94057	FOXA3_FOXC2	ENST00000498187.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr17_+_72426891_72427052	5.75851	FOXA3_FOXC2	ENST00000392627.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr10_+_71561704_71561874	5.7023	FOXA3_FOXC2	ENST00000520267.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr7_+_129906660_129906667	5.50857	FOXA3_FOXC2	ENST00000222481.4|CPA2|ENSG00000158516.7|carboxypeptidase A2 (pancreatic)
hg19_v2_chr8_+_97597148_97597173	5.50025	FOXA3_FOXC2	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr6_-_41715128_41715142	5.26775	FOXA3_FOXC2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr11_-_108464465_108464507	5.05183	FOXA3_FOXC2	ENST00000525344.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr10_+_71561630_71561644	5.02731	FOXA3_FOXC2	ENST00000398974.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398971.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398968.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398966.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398964.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398969.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000356340.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398972.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398973.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr4_+_74269956_74270025	4.96224	FOXA3_FOXC2	ENST00000295897.4|ALB|ENSG00000163631.12|albumin 	ENST00000415165.2|ALB|ENSG00000163631.12|albumin 	ENST00000503124.1|ALB|ENSG00000163631.12|albumin 	ENST00000509063.1|ALB|ENSG00000163631.12|albumin 	ENST00000401494.3|ALB|ENSG00000163631.12|albumin
hg19_v2_chr7_+_112063192_112063237	4.36796	FOXA3_FOXC2	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr2_+_74120094_74120142	4.36191	FOXA3_FOXC2	ENST00000409731.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000345517.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409918.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000442912.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409624.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric
hg19_v2_chr17_-_19290483_19290553	4.26168	FOXA3_FOXC2	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr15_+_96869165_96869183	4.22795	FOXA3_FOXC2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr1_-_57431679_57431810	4.13837	FOXA3_FOXC2	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr7_-_107643674_107643700	3.82943	FOXA3_FOXC2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr12_+_96588143_96588185	3.80327	FOXA3_FOXC2	ENST00000228741.3|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2) 	ENST00000547249.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr20_+_31823792_31823808	3.6171	FOXA3_FOXC2	ENST00000375413.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000354297.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000375422.2|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1
hg19_v2_chr12_-_15038779_15038860	3.52783	FOXA3_FOXC2	ENST00000228938.5|MGP|ENSG00000111341.5|matrix Gla protein 	ENST00000539261.1|MGP|ENSG00000111341.5|matrix Gla protein
hg19_v2_chr7_+_134464414_134464429	3.51784	FOXA3_FOXC2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr5_-_137674000_137674044	3.45399	FOXA3_FOXC2	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr10_-_118032697_118032796	3.42191	FOXA3_FOXC2	ENST00000439649.3|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr7_+_134576317_134576374	3.35824	FOXA3_FOXC2	ENST00000424922.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000495522.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr11_-_108464321_108464380	3.25826	FOXA3_FOXC2	ENST00000265843.4|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr4_-_72649763_72649802	3.16424	FOXA3_FOXC2	ENST00000513476.1|GC|ENSG00000145321.8|group-specific component (vitamin D binding protein)
hg19_v2_chr10_-_118032979_118033132	3.08004	FOXA3_FOXC2	ENST00000355422.6|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr2_-_21266935_21266951	2.99833	FOXA3_FOXC2	ENST00000233242.1|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr17_-_26697304_26697373	2.97321	FOXA3_FOXC2	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr7_+_134464376_134464413	2.81443	FOXA3_FOXC2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr2_-_192711968_192711981	2.78431	FOXA3_FOXC2	ENST00000304141.4|SDPR|ENSG00000168497.4|serum deprivation response
hg19_v2_chr2_-_106054952_106054977	2.75039	FOXA3_FOXC2	ENST00000336660.5|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393352.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000607522.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr4_-_186456652_186456668	2.71372	FOXA3_FOXC2	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr4_-_186456766_186456794	2.68926	FOXA3_FOXC2	ENST00000284771.6|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr5_+_95998746_95998764	2.59502	FOXA3_FOXC2	ENST00000508608.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr11_-_107582775_107582788	2.59065	FOXA3_FOXC2	ENST00000305991.2|SLN|ENSG00000170290.3|sarcolipin
hg19_v2_chr3_+_142315225_142315290	2.57637	FOXA3_FOXC2	ENST00000457734.2|PLS1|ENSG00000120756.8|plastin 1 	ENST00000483373.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000475296.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000495744.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000476044.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000461644.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr22_+_21128167_21128167	2.52924	FOXA3_FOXC2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr5_-_41213607_41213697	2.51142	FOXA3_FOXC2	ENST00000337836.5|C6|ENSG00000039537.9|complement component 6 	ENST00000433294.1|C6|ENSG00000039537.9|complement component 6
hg19_v2_chr14_-_38064198_38064239	2.46648	FOXA3_FOXC2	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr3_+_137717571_137717591	2.45498	FOXA3_FOXC2	ENST00000343735.4|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr14_+_21156915_21156943	2.42482	FOXA3_FOXC2	ENST00000397990.4|ANG|ENSG00000214274.5|angiogenin, ribonuclease, RNase A family, 5 	ENST00000555597.1|RNASE4|ENSG00000258818.2|ribonuclease, RNase A family, 4
hg19_v2_chr3_-_168864427_168864464	2.38948	FOXA3_FOXC2	ENST00000468789.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus
hg19_v2_chr10_+_124320156_124320181	2.27345	FOXA3_FOXC2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr2_-_165424973_165425010	2.2686	FOXA3_FOXC2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr10_+_71562180_71562291	2.26767	FOXA3_FOXC2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr7_+_73242490_73242532	2.26381	FOXA3_FOXC2	ENST00000431918.1|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr4_+_147096837_147096912	2.25589	FOXA3_FOXC2	ENST00000296581.5|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000502781.1|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr10_+_124320195_124320216	2.23881	FOXA3_FOXC2	ENST00000359586.6|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chrX_+_9431324_9431371	2.21677	FOXA3_FOXC2	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr2_+_58655461_58655492	2.20773	FOXA3_FOXC2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr17_+_72427477_72427667	2.1955	FOXA3_FOXC2	ENST00000342648.5|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C 	ENST00000481232.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr15_+_80364901_80364932	2.14068	FOXA3_FOXC2	ENST00000560228.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559835.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559775.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558688.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560392.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560976.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558272.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558390.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr20_+_44519948_44519986	2.13204	FOXA3_FOXC2	ENST00000354880.5|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000191018.5|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr11_-_72070206_72070250	2.12986	FOXA3_FOXC2	ENST00000544382.1|CLPB|ENSG00000162129.8|ClpB caseinolytic peptidase B homolog (E. coli)
hg19_v2_chr1_+_207277590_207277620	2.11736	FOXA3_FOXC2	ENST00000367070.3|C4BPA|ENSG00000123838.6|complement component 4 binding protein, alpha
hg19_v2_chr20_+_9049682_9049710	2.06496	FOXA3_FOXC2	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr20_+_44520009_44520020	2.04741	FOXA3_FOXC2	ENST00000607482.1|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000372459.2|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr17_-_46688334_46688385	2.03944	FOXA3_FOXC2	ENST00000239165.7|HOXB7|ENSG00000260027.3|homeobox B7
hg19_v2_chr12_-_120765565_120765592	2.03497	FOXA3_FOXC2	ENST00000423423.3|PLA2G1B|ENSG00000170890.9|phospholipase A2, group IB (pancreas) 	ENST00000308366.4|PLA2G1B|ENSG00000170890.9|phospholipase A2, group IB (pancreas)
hg19_v2_chr18_+_47088401_47088457	2.00484	FOXA3_FOXC2	ENST00000261292.4|LIPG|ENSG00000101670.7|lipase, endothelial 	ENST00000427224.2|LIPG|ENSG00000101670.7|lipase, endothelial 	ENST00000580036.1|LIPG|ENSG00000101670.7|lipase, endothelial
hg19_v2_chr3_+_69985734_69985754	1.99807	FOXA3_FOXC2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr13_+_73629107_73629148	1.93982	FOXA3_FOXC2	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr2_+_128175997_128176020	1.87966	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr3_+_148545586_148545609	1.87617	FOXA3_FOXC2	ENST00000282957.4|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue) 	ENST00000468341.1|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue)
hg19_v2_chr8_-_23261589_23261753	1.86156	FOXA3_FOXC2	ENST00000524168.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000523833.2|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000519243.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000389131.3|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr14_-_36990354_36990397	1.81336	FOXA3_FOXC2	ENST00000518149.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr3_-_107941230_107941417	1.80511	FOXA3_FOXC2	ENST00000264538.3|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr3_+_137728842_137728952	1.72621	FOXA3_FOXC2	ENST00000183605.5|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr11_-_102401469_102401488	1.70546	FOXA3_FOXC2	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr6_+_161123270_161123278	1.68503	FOXA3_FOXC2	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr3_-_99833333_99833357	1.66331	FOXA3_FOXC2	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr7_+_134430212_134430237	1.6219	FOXA3_FOXC2	ENST00000436461.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr9_-_110251836_110251927	1.61167	FOXA3_FOXC2	ENST00000374672.4|KLF4|ENSG00000136826.10|Kruppel-like factor 4 (gut)
hg19_v2_chr17_+_7487146_7487211	1.60805	FOXA3_FOXC2	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr7_+_134576151_134576171	1.59995	FOXA3_FOXC2	ENST00000393118.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_+_74701062_74701099	1.5969	FOXA3_FOXC2	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr6_+_125524785_125524861	1.59394	FOXA3_FOXC2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr10_-_126849068_126849138	1.59186	FOXA3_FOXC2	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr1_+_104293028_104293028	1.58613	FOXA3_FOXC2	ENST00000370079.3|AMY1C|ENSG00000187733.6|amylase, alpha 1C (salivary)
hg19_v2_chr3_+_141106643_141106681	1.50712	FOXA3_FOXC2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr14_-_94789663_94789731	1.49296	FOXA3_FOXC2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chrX_-_20236970_20237027	1.49218	FOXA3_FOXC2	ENST00000379548.4|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr4_+_169013666_169013697	1.48582	FOXA3_FOXC2	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr18_-_25616519_25616549	1.48326	FOXA3_FOXC2	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr4_-_140223614_140223668	1.45897	FOXA3_FOXC2	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr14_-_24664540_24664690	1.45263	FOXA3_FOXC2	ENST00000530563.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528895.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528669.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000532632.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1
hg19_v2_chr4_+_146403912_146403972	1.42494	FOXA3_FOXC2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr7_+_77469439_77469497	1.41889	FOXA3_FOXC2	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr11_-_66112555_66112601	1.40199	FOXA3_FOXC2	ENST00000425825.2|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1 	ENST00000359957.3|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1
hg19_v2_chr3_+_155588375_155588512	1.37163	FOXA3_FOXC2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr2_-_188312971_188312987	1.36714	FOXA3_FOXC2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr7_+_28452130_28452154	1.3507	FOXA3_FOXC2	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr9_-_70490107_70490246	1.3419	FOXA3_FOXC2	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr10_-_81708854_81708867	1.33092	FOXA3_FOXC2	ENST00000372292.3|SFTPD|ENSG00000133661.11|surfactant protein D
hg19_v2_chr7_+_106809406_106809460	1.3209	FOXA3_FOXC2	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr8_+_21777159_21777221	1.30951	FOXA3_FOXC2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr2_+_88047606_88047606	1.30701	FOXA3_FOXC2	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr12_-_102872317_102872429	1.30614	FOXA3_FOXC2	ENST00000424202.2|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C)
hg19_v2_chr4_-_103266626_103266647	1.30285	FOXA3_FOXC2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr4_-_70080449_70080449	1.29175	FOXA3_FOXC2	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chr4_-_140223670_140223705	1.24155	FOXA3_FOXC2	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr3_-_133969673_133969735	1.23157	FOXA3_FOXC2	ENST00000427044.2|RYK|ENSG00000163785.8|receptor-like tyrosine kinase
hg19_v2_chr4_-_186696425_186696452	1.22417	FOXA3_FOXC2	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr3_-_113897899_113897899	1.20257	FOXA3_FOXC2	ENST00000383673.2|DRD3|ENSG00000151577.8|dopamine receptor D3 	ENST00000295881.7|DRD3|ENSG00000151577.8|dopamine receptor D3
hg19_v2_chr16_+_67381289_67381306	1.20162	FOXA3_FOXC2	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr16_+_67381263_67381284	1.18116	FOXA3_FOXC2	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr17_+_7476136_7476160	1.17706	FOXA3_FOXC2	ENST00000582169.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578754.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578495.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000293831.8|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000380512.5|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000585024.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000583802.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577269.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000584784.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000582746.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr10_+_123923105_123923160	1.17164	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr6_-_87804815_87804830	1.16236	FOXA3_FOXC2	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr15_-_59041768_59041950	1.16077	FOXA3_FOXC2	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr1_-_150669500_150669602	1.14513	FOXA3_FOXC2	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr1_+_104159999_104160068	1.12835	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr6_-_49755019_49755053	1.12038	FOXA3_FOXC2	ENST00000304801.3|PGK2|ENSG00000170950.3|phosphoglycerate kinase 2
hg19_v2_chr14_+_51706886_51707006	1.10873	FOXA3_FOXC2	ENST00000457354.2|TMX1|ENSG00000139921.8|thioredoxin-related transmembrane protein 1
hg19_v2_chr4_-_70826725_70826725	1.10197	FOXA3_FOXC2	ENST00000353151.3|CSN2|ENSG00000135222.6|casein beta
hg19_v2_chr19_+_41257084_41257125	1.10185	FOXA3_FOXC2	ENST00000601393.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr3_+_135741576_135741601	1.08934	FOXA3_FOXC2	ENST00000334546.2|PPP2R3A|ENSG00000073711.6|protein phosphatase 2, regulatory subunit B'', alpha
hg19_v2_chr1_+_151739131_151739177	1.07735	FOXA3_FOXC2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr17_-_202579_202633	1.07324	FOXA3_FOXC2	ENST00000577079.1|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000331302.7|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000536489.2|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains)
hg19_v2_chr1_-_43855444_43855478	1.05812	FOXA3_FOXC2	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr10_-_126849588_126849614	1.04731	FOXA3_FOXC2	ENST00000411419.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr17_-_39041479_39041501	1.04466	FOXA3_FOXC2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr8_-_6420930_6420957	1.04454	FOXA3_FOXC2	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr21_-_43786634_43786703	1.00248	FOXA3_FOXC2	ENST00000291527.2|TFF1|ENSG00000160182.2|trefoil factor 1
hg19_v2_chr20_+_45338126_45338303	0.99259	FOXA3_FOXC2	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr7_-_25268104_25268106	0.978844	FOXA3_FOXC2	ENST00000222674.2|NPVF|ENSG00000105954.2|neuropeptide VF precursor
hg19_v2_chr3_-_114343039_114343085	0.976311	FOXA3_FOXC2	ENST00000481632.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr8_-_95449155_95449188	0.97363	FOXA3_FOXC2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr17_+_8924837_8924872	0.972963	FOXA3_FOXC2	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr5_+_179921344_179921423	0.958737	FOXA3_FOXC2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr2_+_109223595_109223617	0.949356	FOXA3_FOXC2	ENST00000410093.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr8_+_19171128_19171182	0.941201	FOXA3_FOXC2	ENST00000265807.3|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr5_+_179921430_179921461	0.940885	FOXA3_FOXC2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr9_-_75567962_75567979	0.902013	FOXA3_FOXC2	ENST00000297785.3|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1 	ENST00000376939.1|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1
hg19_v2_chr12_-_21927736_21927768	0.887186	FOXA3_FOXC2	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr1_+_172389821_172389833	0.872472	FOXA3_FOXC2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr7_+_106505696_106505798	0.855835	FOXA3_FOXC2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr1_+_18958008_18958023	0.822222	FOXA3_FOXC2	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr15_-_40600111_40600166	0.821353	FOXA3_FOXC2	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr12_+_58087901_58087947	0.80039	FOXA3_FOXC2	ENST00000315970.7|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000547079.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000439210.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389146.6|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000413095.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000551035.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000257966.8|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000435406.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000550372.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389142.5|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr6_-_112575912_112575931	0.798455	FOXA3_FOXC2	ENST00000522006.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000230538.7|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000519932.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr21_-_38445011_38445200	0.79397	FOXA3_FOXC2	ENST00000464265.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P 	ENST00000399102.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr1_-_54405773_54405874	0.792394	FOXA3_FOXC2	ENST00000371376.1|HSPB11|ENSG00000081870.7|heat shock protein family B (small), member 11
hg19_v2_chr12_+_21525818_21525862	0.7783	FOXA3_FOXC2	ENST00000240652.3|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000542023.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000537593.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide
hg19_v2_chr3_-_196910721_196910729	0.773702	FOXA3_FOXC2	ENST00000443183.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr7_+_134832808_134832879	0.773702	FOXA3_FOXC2	ENST00000275767.3|TMEM140|ENSG00000146859.6|transmembrane protein 140
hg19_v2_chr12_-_48099754_48099769	0.773112	FOXA3_FOXC2	ENST00000380650.4|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr5_+_101569696_101569696	0.76849	FOXA3_FOXC2	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr10_+_105314881_105314989	0.763083	FOXA3_FOXC2	ENST00000437579.1|NEURL|ENSG00000107954.6|neuralized E3 ubiquitin protein ligase 1
hg19_v2_chr7_+_106505912_106505931	0.75949	FOXA3_FOXC2	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr12_-_48099773_48099844	0.753405	FOXA3_FOXC2	ENST00000432584.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3 	ENST00000005386.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr14_-_25479811_25479846	0.752727	FOXA3_FOXC2	ENST00000550887.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr4_-_123377880_123377880	0.723906	FOXA3_FOXC2	ENST00000226730.4|IL2|ENSG00000109471.4|interleukin 2
hg19_v2_chr2_-_182545603_182545603	0.717942	FOXA3_FOXC2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr19_-_15443318_15443373	0.714444	FOXA3_FOXC2	ENST00000360016.5|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr12_+_59989918_59989965	0.703304	FOXA3_FOXC2	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr14_+_58711539_58711627	0.698849	FOXA3_FOXC2	ENST00000216455.4|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000412908.2|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000557508.1|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3
hg19_v2_chr1_-_246357029_246357043	0.693266	FOXA3_FOXC2	ENST00000391836.2|SMYD3|ENSG00000185420.14|SET and MYND domain containing 3
hg19_v2_chr1_-_246729544_246729626	0.690321	FOXA3_FOXC2	ENST00000544618.1|TFB2M|ENSG00000162851.6|transcription factor B2, mitochondrial 	ENST00000366514.4|TFB2M|ENSG00000162851.6|transcription factor B2, mitochondrial
hg19_v2_chr1_+_154540246_154540260	0.687159	FOXA3_FOXC2	ENST00000368476.3|CHRNB2|ENSG00000160716.4|cholinergic receptor, nicotinic, beta 2 (neuronal)
hg19_v2_chr6_-_161085291_161085308	0.67816	FOXA3_FOXC2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr9_-_14722715_14722738	0.677553	FOXA3_FOXC2	ENST00000380911.3|CER1|ENSG00000147869.4|cerberus 1, DAN family BMP antagonist
hg19_v2_chr1_-_169555779_169555826	0.672285	FOXA3_FOXC2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr18_-_3874271_3874337	0.670714	FOXA3_FOXC2	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr14_+_74034310_74034345	0.67007	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr19_+_47421933_47421933	0.648942	FOXA3_FOXC2	ENST00000404338.3|ARHGAP35|ENSG00000160007.13|Rho GTPase activating protein 35
hg19_v2_chr12_-_18243075_18243091	0.641537	FOXA3_FOXC2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr1_-_146696901_146696974	0.636041	FOXA3_FOXC2	ENST00000369272.3|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5 	ENST00000441068.2|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5
hg19_v2_chr12_-_102591604_102591623	0.635624	FOXA3_FOXC2	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr18_-_52626622_52626739	0.623817	FOXA3_FOXC2	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chrX_+_99839799_99839938	0.608901	FOXA3_FOXC2	ENST00000373031.4|TNMD|ENSG00000000005.5|tenomodulin
hg19_v2_chr7_-_81399438_81399514	0.608742	FOXA3_FOXC2	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr6_-_26056695_26056701	0.607777	FOXA3_FOXC2	ENST00000343677.2|HIST1H1C|ENSG00000187837.2|histone cluster 1, H1c
hg19_v2_chr4_+_118955500_118955612	0.602117	FOXA3_FOXC2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr18_-_3874247_3874262	0.584802	FOXA3_FOXC2	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr1_+_152486950_152486978	0.568027	FOXA3_FOXC2	ENST00000368790.3|CRCT1|ENSG00000169509.5|cysteine-rich C-terminal 1
hg19_v2_chr10_+_35484053_35484076	0.56735	FOXA3_FOXC2	ENST00000487763.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000473940.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000488328.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000356917.5|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr1_-_28384598_28384680	0.55717	FOXA3_FOXC2	ENST00000373864.1|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr1_+_86934526_86934578	0.550969	FOXA3_FOXC2	ENST00000394711.1|CLCA1|ENSG00000016490.11|chloride channel accessory 1
hg19_v2_chr5_-_98262240_98262240	0.550897	FOXA3_FOXC2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr3_+_148447887_148447911	0.547036	FOXA3_FOXC2	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr20_-_7921090_7921121	0.539119	FOXA3_FOXC2	ENST00000378789.3|HAO1|ENSG00000101323.4|hydroxyacid oxidase (glycolate oxidase) 1
hg19_v2_chrX_+_24167746_24167811	0.536401	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr15_-_59665062_59665099	0.527938	FOXA3_FOXC2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr1_+_18957500_18957623	0.525203	FOXA3_FOXC2	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr9_+_70856397_70856397	0.523771	FOXA3_FOXC2	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr6_-_25830785_25830844	0.523764	FOXA3_FOXC2	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr2_+_28974668_28974729	0.521837	FOXA3_FOXC2	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr3_+_136649311_136649360	0.513144	FOXA3_FOXC2	ENST00000469404.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1 	ENST00000467911.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1
hg19_v2_chr18_-_3874752_3874767	0.505318	FOXA3_FOXC2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr11_+_7110165_7110277	0.503741	FOXA3_FOXC2	ENST00000306904.5|RBMXL2|ENSG00000170748.5|RNA binding motif protein, X-linked-like 2
hg19_v2_chr7_-_81399355_81399373	0.503593	FOXA3_FOXC2	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr15_-_66797172_66797221	0.497103	FOXA3_FOXC2	ENST00000569438.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000569696.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000307961.6|RPL4|ENSG00000174444.10|ribosomal protein L4
hg19_v2_chr12_+_120740119_120740124	0.496643	FOXA3_FOXC2	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr6_+_26251835_26251879	0.483249	FOXA3_FOXC2	ENST00000356350.2|HIST1H2BH|ENSG00000197459.2|histone cluster 1, H2bh
hg19_v2_chr4_+_148653206_148653219	0.457696	FOXA3_FOXC2	ENST00000336498.3|ARHGAP10|ENSG00000071205.7|Rho GTPase activating protein 10
hg19_v2_chrX_-_15402498_15402515	0.455313	FOXA3_FOXC2	ENST00000297904.3|FIGF|ENSG00000165197.4|c-fos induced growth factor (vascular endothelial growth factor D)
hg19_v2_chr2_-_161056762_161056799	0.455024	FOXA3_FOXC2	ENST00000428609.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409967.2|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr6_+_108882069_108882087	0.453675	FOXA3_FOXC2	ENST00000406360.1|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr19_-_46088068_46088100	0.448324	FOXA3_FOXC2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr3_+_119316721_119316739	0.447602	FOXA3_FOXC2	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr12_-_18243119_18243133	0.440475	FOXA3_FOXC2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr2_-_161056802_161056815	0.434356	FOXA3_FOXC2	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr4_+_88754113_88754139	0.432859	FOXA3_FOXC2	ENST00000560249.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000540395.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000511670.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000361056.3|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chrX_+_135730297_135730352	0.426838	FOXA3_FOXC2	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr6_-_168479839_168479904	0.426081	FOXA3_FOXC2	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr5_-_58571935_58571951	0.424278	FOXA3_FOXC2	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr4_-_116034979_116035046	0.415444	FOXA3_FOXC2	ENST00000264363.2|NDST4|ENSG00000138653.5|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
hg19_v2_chr11_+_8040739_8040815	0.407271	FOXA3_FOXC2	ENST00000534099.1|TUB|ENSG00000166402.4|tubby bipartite transcription factor
hg19_v2_chr1_-_167522982_167523017	0.404522	FOXA3_FOXC2	ENST00000370509.4|CREG1|ENSG00000143162.7|cellular repressor of E1A-stimulated genes 1
hg19_v2_chrX_+_24167828_24167907	0.39912	FOXA3_FOXC2	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr15_+_49462434_49462488	0.39686	FOXA3_FOXC2	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr4_+_88720698_88720733	0.394136	FOXA3_FOXC2	ENST00000226284.5|IBSP|ENSG00000029559.5|integrin-binding sialoprotein
hg19_v2_chr6_-_112575687_112575755	0.391862	FOXA3_FOXC2	ENST00000521398.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000424408.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000243219.3|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr5_+_140529630_140529683	0.380657	FOXA3_FOXC2	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr1_-_223308098_223308225	0.354956	FOXA3_FOXC2	ENST00000342210.6|TLR5|ENSG00000187554.7|toll-like receptor 5
hg19_v2_chr2_-_225434538_225434545	0.351927	FOXA3_FOXC2	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr3_+_69985792_69985874	0.346956	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr13_-_99910673_99910682	0.341182	FOXA3_FOXC2	ENST00000397473.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18 	ENST00000397470.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr6_-_13621126_13621126	0.339389	FOXA3_FOXC2	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr5_-_59481406_59481425	0.337903	FOXA3_FOXC2	ENST00000546160.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr3_-_186080012_186080030	0.331692	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr2_+_28974603_28974617	0.329339	FOXA3_FOXC2	ENST00000441461.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000358506.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chrX_+_150345054_150345125	0.324168	FOXA3_FOXC2	ENST00000218316.3|GPR50|ENSG00000102195.7|G protein-coupled receptor 50
hg19_v2_chr3_+_119316689_119316710	0.318793	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr14_-_70263979_70264009	0.318341	FOXA3_FOXC2	ENST00000216540.4|SLC10A1|ENSG00000100652.4|solute carrier family 10 (sodium/bile acid cotransporter), member 1
hg19_v2_chr18_+_21033239_21033302	0.312507	FOXA3_FOXC2	ENST00000581585.1|RIOK3|ENSG00000101782.10|RIO kinase 3 	ENST00000577501.1|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr2_-_183291741_183291771	0.309737	FOXA3_FOXC2	ENST00000351439.5|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent 	ENST00000409365.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chrX_+_135614293_135614318	0.303953	FOXA3_FOXC2	ENST00000370634.3|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chrX_-_55020511_55020626	0.300599	FOXA3_FOXC2	ENST00000375006.3|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 	ENST00000374992.2|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr2_-_87248975_87248975	0.297133	FOXA3_FOXC2	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chrX_+_135730373_135730399	0.291883	FOXA3_FOXC2	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr15_+_58430368_58430401	0.291182	FOXA3_FOXC2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chrX_-_80457385_80457441	0.289601	FOXA3_FOXC2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr1_+_114471809_114471855	0.286467	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr10_+_95848824_95848852	0.281528	FOXA3_FOXC2	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr2_+_113885138_113885181	0.274749	FOXA3_FOXC2	ENST00000409930.3|IL1RN|ENSG00000136689.14|interleukin 1 receptor antagonist
hg19_v2_chr4_-_89205879_89205921	0.273572	FOXA3_FOXC2	ENST00000608933.1|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K 	ENST00000315194.4|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K 	ENST00000514204.1|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K
hg19_v2_chr17_+_79953310_79953319	0.272045	FOXA3_FOXC2	ENST00000582355.2|ASPSCR1|ENSG00000169696.11|alveolar soft part sarcoma chromosome region, candidate 1
hg19_v2_chr15_+_58430567_58430589	0.271543	FOXA3_FOXC2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr2_-_175260368_175260450	0.268391	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr6_-_112575758_112575802	0.261531	FOXA3_FOXC2	ENST00000431543.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000453937.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000368638.4|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000389463.4|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr6_-_165989936_165989936	0.253333	FOXA3_FOXC2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr3_+_132316081_132316102	0.240738	FOXA3_FOXC2	ENST00000249887.2|ACKR4|ENSG00000129048.6|atypical chemokine receptor 4
hg19_v2_chr18_-_31803169_31803169	0.239904	FOXA3_FOXC2	ENST00000590712.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr11_-_82708435_82708472	0.227075	FOXA3_FOXC2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr15_+_49462397_49462430	0.218479	FOXA3_FOXC2	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr14_+_56585048_56585150	0.211861	FOXA3_FOXC2	ENST00000267460.4|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr8_+_75736761_75736777	0.205871	FOXA3_FOXC2	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr12_+_72080253_72080293	0.205837	FOXA3_FOXC2	ENST00000549735.1|TMEM19|ENSG00000139291.9|transmembrane protein 19
hg19_v2_chr17_-_38020379_38020390	0.202286	FOXA3_FOXC2	ENST00000351680.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000346243.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000350532.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000467757.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439016.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr2_-_208030647_208030689	0.193535	FOXA3_FOXC2	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr4_+_88754069_88754112	0.192685	FOXA3_FOXC2	ENST00000395102.4|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000497649.2|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr11_-_115375107_115375283	0.188434	FOXA3_FOXC2	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr12_+_96588279_96588323	0.179761	FOXA3_FOXC2	ENST00000552142.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr16_+_20775358_20775386	0.172092	FOXA3_FOXC2	ENST00000440284.2|ACSM3|ENSG00000005187.7|acyl-CoA synthetase medium-chain family member 3
hg19_v2_chr20_+_52105495_52105495	0.16929	FOXA3_FOXC2	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr17_-_38020392_38020477	0.167786	FOXA3_FOXC2	ENST00000346872.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439167.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377945.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000394189.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377944.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377958.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000535189.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377952.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr6_+_52051171_52051185	0.161578	FOXA3_FOXC2	ENST00000340057.1|IL17A|ENSG00000112115.5|interleukin 17A
hg19_v2_chr14_-_99737565_99737617	0.153767	FOXA3_FOXC2	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr11_-_57158109_57158130	0.148502	FOXA3_FOXC2	ENST00000525955.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000533605.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000311862.5|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)
hg19_v2_chr17_-_36358166_36358166	0.136258	FOXA3_FOXC2	ENST00000537432.1|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr2_+_46844290_46844384	0.134912	FOXA3_FOXC2	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr4_-_71532339_71532377	0.114066	FOXA3_FOXC2	ENST00000254801.4|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr6_+_72922505_72922516	0.109697	FOXA3_FOXC2	ENST00000401910.3|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr14_+_20811722_20811741	0.106961	FOXA3_FOXC2	ENST00000429687.3|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr5_+_135468516_135468621	0.104488	FOXA3_FOXC2	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr14_+_37126765_37126799	0.103735	FOXA3_FOXC2	ENST00000402703.2|PAX9|ENSG00000198807.8|paired box 9
hg19_v2_chr7_+_95115210_95115217	0.0821221	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr4_+_184365744_184365797	0.0741332	FOXA3_FOXC2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr22_-_30867973_30868036	0.0733013	FOXA3_FOXC2	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr15_+_60296421_60296464	0.0726482	FOXA3_FOXC2	ENST00000396057.4|FOXB1|ENSG00000171956.5|forkhead box B1
hg19_v2_chr6_-_112575838_112575849	0.0700517	FOXA3_FOXC2	ENST00000455073.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr10_-_63995871_63996022	0.0680137	FOXA3_FOXC2	ENST00000315289.2|RTKN2|ENSG00000182010.6|rhotekin 2
hg19_v2_chr1_+_179851410_179851447	0.0589081	FOXA3_FOXC2	ENST00000271583.3|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1 	ENST00000606911.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr6_-_117747015_117747048	0.054376	FOXA3_FOXC2	ENST00000368508.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase 	ENST00000368507.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase
hg19_v2_chr2_-_46844242_46844258	0.0543067	FOXA3_FOXC2	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr9_+_71986182_71986182	0.0528868	FOXA3_FOXC2	ENST00000303068.7|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr7_+_116654935_116654949	0.0526956	FOXA3_FOXC2	ENST00000432298.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000422922.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr6_+_72922590_72922605	0.0511409	FOXA3_FOXC2	ENST00000523963.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr9_-_37034028_37034157	0.0407392	FOXA3_FOXC2	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr7_-_81399329_81399347	0.0289232	FOXA3_FOXC2	ENST00000453411.1|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor) 	ENST00000444829.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr18_+_61575200_61575230	0.0288548	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr9_-_95186739_95186763	0.0253591	FOXA3_FOXC2	ENST00000375550.4|OMD|ENSG00000127083.7|osteomodulin
hg19_v2_chr13_-_99667960_99668068	0.0251146	FOXA3_FOXC2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr20_-_55841398_55841458	0.0221506	FOXA3_FOXC2	ENST00000395864.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr21_-_36259445_36259519	0.0214458	FOXA3_FOXC2	ENST00000399240.1|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr1_+_40974431_40974447	0.018535	FOXA3_FOXC2	ENST00000296380.4|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000432259.1|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000418186.1|EXO5|ENSG00000164002.7|exonuclease 5
hg19_v2_chr7_-_107443652_107443675	0.017848	FOXA3_FOXC2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr7_+_142829162_142829176	0.0171025	FOXA3_FOXC2	ENST00000291009.3|PIP|ENSG00000159763.3|prolactin-induced protein
hg19_v2_chr3_+_189349162_189349305	0.0150197	FOXA3_FOXC2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr12_+_59989791_59989874	0.0115981	FOXA3_FOXC2	ENST00000552432.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
