hg19_v2_chrX_-_106959631_106959775	5.61418	GAGAUGA	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr11_+_113930291_113930339	5.27229	GAGAUGA	ENST00000335953.4|ZBTB16|ENSG00000109906.9|zinc finger and BTB domain containing 16
hg19_v2_chr13_+_48807288_48807302	3.91415	GAGAUGA	ENST00000378565.5|ITM2B|ENSG00000136156.8|integral membrane protein 2B
hg19_v2_chr15_+_74833518_74833567	3.87901	GAGAUGA	ENST00000346246.5|ARID3B|ENSG00000179361.13|AT rich interactive domain 3B (BRIGHT-like)
hg19_v2_chr19_+_18942720_18942748	3.34978	GAGAUGA	ENST00000262803.5|UPF1|ENSG00000005007.8|UPF1 regulator of nonsense transcripts homolog (yeast)
hg19_v2_chr17_+_19281034_19281091	2.97066	GAGAUGA	ENST00000308406.5|MAPK7|ENSG00000166484.15|mitogen-activated protein kinase 7 	ENST00000299612.7|MAPK7|ENSG00000166484.15|mitogen-activated protein kinase 7
hg19_v2_chr15_+_31619013_31619095	2.18165	GAGAUGA	ENST00000307145.3|KLF13|ENSG00000169926.5|Kruppel-like factor 13
hg19_v2_chr1_-_57045228_57045242	1.97327	GAGAUGA	ENST00000371250.3|PPAP2B|ENSG00000162407.8|phosphatidic acid phosphatase type 2B
hg19_v2_chr1_-_205290865_205290891	1.92791	GAGAUGA	ENST00000367157.3|NUAK2|ENSG00000163545.7|NUAK family, SNF1-like kinase, 2
hg19_v2_chr2_-_217560248_217560278	1.92601	GAGAUGA	ENST00000233813.4|IGFBP5|ENSG00000115461.4|insulin-like growth factor binding protein 5
hg19_v2_chr19_-_13617247_13617319	1.88425	GAGAUGA	ENST00000573710.2|CACNA1A|ENSG00000141837.14|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
hg19_v2_chr5_+_142149955_142150000	1.87721	GAGAUGA	ENST00000378004.3|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr17_+_47865917_47866068	1.82977	GAGAUGA	ENST00000259021.4|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000454930.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000509773.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000510819.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000424009.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7
hg19_v2_chr4_+_87856129_87856186	1.80201	GAGAUGA	ENST00000395146.4|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1 	ENST00000507468.1|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1
hg19_v2_chr18_+_9136758_9136852	1.74374	GAGAUGA	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr15_+_85923856_85923987	1.73369	GAGAUGA	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr12_+_11802753_11802834	1.66601	GAGAUGA	ENST00000396373.4|ETV6|ENSG00000139083.6|ets variant 6
hg19_v2_chr22_+_40390930_40390994	1.62316	GAGAUGA	ENST00000333407.6|FAM83F|ENSG00000133477.12|family with sequence similarity 83, member F
hg19_v2_chr16_-_79634595_79634620	1.45037	GAGAUGA	ENST00000326043.4|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 	ENST00000393350.1|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
hg19_v2_chr14_-_96830207_96830207	1.4477	GAGAUGA	ENST00000359933.4|ATG2B|ENSG00000066739.7|autophagy related 2B
hg19_v2_chr7_+_20370746_20370778	1.42855	GAGAUGA	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr3_+_9975497_9975553	1.39399	GAGAUGA	ENST00000397170.3|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1 	ENST00000383811.3|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1 	ENST00000452070.1|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1 	ENST00000326434.5|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1
hg19_v2_chr19_-_19739007_19739051	1.37892	GAGAUGA	ENST00000586703.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2 	ENST00000591042.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2 	ENST00000407877.3|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2
hg19_v2_chr2_+_45878790_45878913	1.3547	GAGAUGA	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr15_+_65134088_65134147	1.31804	GAGAUGA	ENST00000323544.4|PLEKHO2|ENSG00000241839.5|pleckstrin homology domain containing, family O member 2 	ENST00000437723.1|AC069368.3|ENSG00000249240.2|Uncharacterized protein
hg19_v2_chr2_+_28615669_28615733	1.30665	GAGAUGA	ENST00000379619.1|FOSL2|ENSG00000075426.7|FOS-like antigen 2 	ENST00000264716.4|FOSL2|ENSG00000075426.7|FOS-like antigen 2
hg19_v2_chr16_+_50187556_50187779	1.30028	GAGAUGA	ENST00000561678.1|PAPD5|ENSG00000121274.8|PAP associated domain containing 5 	ENST00000357464.3|PAPD5|ENSG00000121274.8|PAP associated domain containing 5
hg19_v2_chr5_+_32711419_32711540	1.27362	GAGAUGA	ENST00000265074.8|NPR3|ENSG00000113389.11|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
hg19_v2_chr11_-_73309228_73309257	1.2373	GAGAUGA	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr15_-_26108355_26108417	1.20195	GAGAUGA	ENST00000356865.6|ATP10A|ENSG00000206190.7|ATPase, class V, type 10A
hg19_v2_chr5_-_100238956_100238994	1.17722	GAGAUGA	ENST00000231461.5|ST8SIA4|ENSG00000113532.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
hg19_v2_chr1_-_179198702_179198741	1.16786	GAGAUGA	ENST00000502732.1|ABL2|ENSG00000143322.15|c-abl oncogene 2, non-receptor tyrosine kinase
hg19_v2_chr14_+_101193164_101193241	1.1525	GAGAUGA	ENST00000341267.4|DLK1|ENSG00000185559.9|delta-like 1 homolog (Drosophila)
hg19_v2_chr6_-_132272504_132272519	1.12307	GAGAUGA	ENST00000367976.3|CTGF|ENSG00000118523.5|connective tissue growth factor
hg19_v2_chr8_+_102504651_102504683	1.12303	GAGAUGA	ENST00000251808.3|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila) 	ENST00000521085.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr1_+_62208091_62208182	1.09477	GAGAUGA	ENST00000316485.6|INADL|ENSG00000132849.14|InaD-like (Drosophila) 	ENST00000371158.2|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr2_-_25475120_25475180	1.0474	GAGAUGA	ENST00000380746.4|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha 	ENST00000402667.1|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha
hg19_v2_chr9_-_123476719_123476810	1.0199	GAGAUGA	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr15_-_49338748_49338765	1.00683	GAGAUGA	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr12_+_69864129_69864222	1.00248	GAGAUGA	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr17_-_48278983_48278999	0.992313	GAGAUGA	ENST00000225964.5|COL1A1|ENSG00000108821.9|collagen, type I, alpha 1
hg19_v2_chrX_+_133507327_133507386	0.989388	GAGAUGA	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr14_+_21538429_21538469	0.927849	GAGAUGA	ENST00000298694.4|ARHGEF40|ENSG00000165801.5|Rho guanine nucleotide exchange factor (GEF) 40 	ENST00000555038.1|ARHGEF40|ENSG00000165801.5|Rho guanine nucleotide exchange factor (GEF) 40
hg19_v2_chr6_+_32709119_32709175	0.908794	GAGAUGA	ENST00000374940.3|HLA-DQA2|ENSG00000237541.3|major histocompatibility complex, class II, DQ alpha 2
hg19_v2_chr8_-_63998590_63998634	0.885716	GAGAUGA	ENST00000260116.4|TTPA|ENSG00000137561.4|tocopherol (alpha) transfer protein
hg19_v2_chr5_+_169064245_169064303	0.87114	GAGAUGA	ENST00000256935.8|DOCK2|ENSG00000134516.11|dedicator of cytokinesis 2
hg19_v2_chr4_+_55095264_55095390	0.865545	GAGAUGA	ENST00000257290.5|PDGFRA|ENSG00000134853.7|platelet-derived growth factor receptor, alpha polypeptide
hg19_v2_chr2_-_96931679_96931756	0.858278	GAGAUGA	ENST00000258439.3|TMEM127|ENSG00000135956.4|transmembrane protein 127 	ENST00000432959.1|TMEM127|ENSG00000135956.4|transmembrane protein 127
hg19_v2_chr15_+_39873268_39873294	0.857754	GAGAUGA	ENST00000397591.2|THBS1|ENSG00000137801.9|thrombospondin 1 	ENST00000260356.5|THBS1|ENSG00000137801.9|thrombospondin 1
hg19_v2_chr3_+_9834758_9834801	0.8352	GAGAUGA	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chr19_-_10121144_10121155	0.814483	GAGAUGA	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr9_-_35650900_35650967	0.802737	GAGAUGA	ENST00000259608.3|SIT1|ENSG00000137078.4|signaling threshold regulating transmembrane adaptor 1
hg19_v2_chr11_-_118661828_118661886	0.773388	GAGAUGA	ENST00000264018.4|DDX6|ENSG00000110367.7|DEAD (Asp-Glu-Ala-Asp) box helicase 6
hg19_v2_chr2_+_233562015_233562062	0.719355	GAGAUGA	ENST00000427233.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000373566.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000373563.4|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000428883.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000456491.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409480.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000421433.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000425040.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000430720.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409547.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000423659.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409196.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409451.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000429187.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000440945.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2
hg19_v2_chr18_-_29522989_29523104	0.696275	GAGAUGA	ENST00000582539.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000283351.4|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000582513.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8
hg19_v2_chr16_+_70148230_70148275	0.694855	GAGAUGA	ENST00000398122.3|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit 	ENST00000568530.1|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit
hg19_v2_chr17_+_60704762_60704762	0.688195	GAGAUGA	ENST00000303375.5|MRC2|ENSG00000011028.9|mannose receptor, C type 2
hg19_v2_chrX_+_9983602_9983602	0.661817	GAGAUGA	ENST00000380861.4|WWC3|ENSG00000047644.13|WWC family member 3
hg19_v2_chr10_+_76871454_76871467	0.65996	GAGAUGA	ENST00000372687.4|SAMD8|ENSG00000156671.8|sterile alpha motif domain containing 8
hg19_v2_chr7_-_42276612_42276782	0.65706	GAGAUGA	ENST00000395925.3|GLI3|ENSG00000106571.8|GLI family zinc finger 3 	ENST00000437480.1|GLI3|ENSG00000106571.8|GLI family zinc finger 3
hg19_v2_chr3_-_24536253_24536328	0.648266	GAGAUGA	ENST00000428492.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000396671.2|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000431815.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000418247.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000416420.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000356447.4|THRB|ENSG00000151090.13|thyroid hormone receptor, beta
hg19_v2_chr16_+_66400533_66400545	0.64453	GAGAUGA	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr10_-_105615164_105615323	0.591013	GAGAUGA	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr13_-_33002151_33002273	0.589521	GAGAUGA	ENST00000495479.1|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000343281.4|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000464470.1|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000380139.4|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000380133.2|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1
hg19_v2_chr5_+_141303373_141303421	0.574366	GAGAUGA	ENST00000432126.2|KIAA0141|ENSG00000081791.4|KIAA0141 	ENST00000194118.4|KIAA0141|ENSG00000081791.4|KIAA0141
hg19_v2_chr19_-_14629224_14629262	0.565534	GAGAUGA	ENST00000254322.2|DNAJB1|ENSG00000132002.3|DnaJ (Hsp40) homolog, subfamily B, member 1
hg19_v2_chr1_-_155532484_155532605	0.549019	GAGAUGA	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr1_+_178062855_178062903	0.541835	GAGAUGA	ENST00000448150.3|RASAL2|ENSG00000075391.12|RAS protein activator like 2
hg19_v2_chr6_+_43265992_43266003	0.51168	GAGAUGA	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr10_-_30024716_30024739	0.509348	GAGAUGA	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr10_+_104678032_104678094	0.503196	GAGAUGA	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr2_-_73053126_73053184	0.49871	GAGAUGA	ENST00000272427.6|EXOC6B|ENSG00000144036.10|exocyst complex component 6B 	ENST00000410104.1|EXOC6B|ENSG00000144036.10|exocyst complex component 6B
hg19_v2_chr3_+_49591881_49591940	0.497148	GAGAUGA	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr17_-_47841485_47841529	0.493811	GAGAUGA	ENST00000506156.1|FAM117A|ENSG00000121104.3|family with sequence similarity 117, member A 	ENST00000240364.2|FAM117A|ENSG00000121104.3|family with sequence similarity 117, member A
hg19_v2_chr12_+_103981044_103981061	0.481072	GAGAUGA	ENST00000388887.2|STAB2|ENSG00000136011.10|stabilin 2
hg19_v2_chr19_-_40324255_40324296	0.44725	GAGAUGA	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr15_+_77287426_77287487	0.437616	GAGAUGA	ENST00000558012.1|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1 	ENST00000267939.5|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1 	ENST00000379595.3|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1
hg19_v2_chr2_+_97481974_97482015	0.416764	GAGAUGA	ENST00000377060.3|CNNM3|ENSG00000168763.11|cyclin M3 	ENST00000305510.3|CNNM3|ENSG00000168763.11|cyclin M3
hg19_v2_chr2_-_25873079_25873093	0.41183	GAGAUGA	ENST00000496972.2|DTNB|ENSG00000138101.14|dystrobrevin, beta
hg19_v2_chr10_+_111767720_111767752	0.395683	GAGAUGA	ENST00000356080.4|ADD3|ENSG00000148700.9|adducin 3 (gamma) 	ENST00000277900.8|ADD3|ENSG00000148700.9|adducin 3 (gamma)
hg19_v2_chr2_-_69870835_69870853	0.381785	GAGAUGA	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr2_-_206950781_206950947	0.379832	GAGAUGA	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr11_-_118047376_118047388	0.373247	GAGAUGA	ENST00000278947.5|SCN2B|ENSG00000149575.5|sodium channel, voltage-gated, type II, beta subunit
hg19_v2_chr17_+_14204389_14204416	0.372033	GAGAUGA	ENST00000360954.2|HS3ST3B1|ENSG00000125430.4|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
hg19_v2_chr6_+_114178512_114178586	0.369247	GAGAUGA	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr9_-_113342160_113342214	0.36718	GAGAUGA	ENST00000401783.2|SVEP1|ENSG00000165124.13|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 	ENST00000374461.1|SVEP1|ENSG00000165124.13|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
hg19_v2_chr16_-_23521710_23521826	0.363521	GAGAUGA	ENST00000562117.1|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2 	ENST00000567468.1|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2 	ENST00000562944.1|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2 	ENST00000309859.4|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2
hg19_v2_chr19_+_3359561_3359681	0.36173	GAGAUGA	ENST00000589123.1|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor) 	ENST00000346156.5|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor) 	ENST00000395111.3|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor) 	ENST00000586919.1|NFIC|ENSG00000141905.13|nuclear factor I/C (CCAAT-binding transcription factor)
hg19_v2_chr3_-_114790179_114790222	0.360998	GAGAUGA	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr9_+_79074068_79074150	0.357187	GAGAUGA	ENST00000444201.2|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2 	ENST00000376730.4|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2
hg19_v2_chr12_-_42538657_42538720	0.348655	GAGAUGA	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr12_+_8234807_8234855	0.338979	GAGAUGA	ENST00000339754.5|NECAP1|ENSG00000089818.12|NECAP endocytosis associated 1
hg19_v2_chr8_-_38853990_38854061	0.336964	GAGAUGA	ENST00000456845.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000397070.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000517872.1|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000412303.1|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000456397.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2
hg19_v2_chr7_+_31092076_31092106	0.331521	GAGAUGA	ENST00000304166.4|ADCYAP1R1|ENSG00000078549.10|adenylate cyclase activating polypeptide 1 (pituitary) receptor type I
hg19_v2_chr19_-_38806560_38806607	0.331478	GAGAUGA	ENST00000591755.1|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae) 	ENST00000337679.8|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae) 	ENST00000339413.6|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae)
hg19_v2_chr17_-_46623441_46623441	0.32067	GAGAUGA	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr12_-_53625958_53626036	0.311797	GAGAUGA	ENST00000327550.3|RARG|ENSG00000172819.12|retinoic acid receptor, gamma 	ENST00000546717.1|RARG|ENSG00000172819.12|retinoic acid receptor, gamma 	ENST00000425354.2|RARG|ENSG00000172819.12|retinoic acid receptor, gamma 	ENST00000394426.1|RARG|ENSG00000172819.12|retinoic acid receptor, gamma
hg19_v2_chr11_-_62572901_62572964	0.300964	GAGAUGA	ENST00000439713.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531131.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000530875.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531709.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000294172.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1
hg19_v2_chr7_+_142985308_142985453	0.297508	GAGAUGA	ENST00000310447.5|CASP2|ENSG00000106144.15|caspase 2, apoptosis-related cysteine peptidase
hg19_v2_chr18_-_60987220_60987386	0.296466	GAGAUGA	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr12_-_54673871_54673925	0.290147	GAGAUGA	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr13_+_73632897_73632930	0.283792	GAGAUGA	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr20_-_48099182_48099214	0.283649	GAGAUGA	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr12_+_2162447_2162464	0.27626	GAGAUGA	ENST00000335762.5|CACNA1C|ENSG00000151067.16|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENST00000399655.1|CACNA1C|ENSG00000151067.16|calcium channel, voltage-dependent, L type, alpha 1C subunit
hg19_v2_chr9_+_90112741_90112761	0.272968	GAGAUGA	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr6_-_91296602_91296721	0.268424	GAGAUGA	ENST00000369325.3|MAP3K7|ENSG00000135341.13|mitogen-activated protein kinase kinase kinase 7 	ENST00000369327.3|MAP3K7|ENSG00000135341.13|mitogen-activated protein kinase kinase kinase 7
hg19_v2_chr14_+_77228532_77228672	0.266299	GAGAUGA	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr11_-_67236691_67236748	0.264924	GAGAUGA	ENST00000544903.1|TMEM134|ENSG00000172663.4|transmembrane protein 134 	ENST00000308022.2|TMEM134|ENSG00000172663.4|transmembrane protein 134 	ENST00000393877.3|TMEM134|ENSG00000172663.4|transmembrane protein 134 	ENST00000452789.2|TMEM134|ENSG00000172663.4|transmembrane protein 134
hg19_v2_chr1_+_87794150_87794172	0.261622	GAGAUGA	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr10_+_105253661_105253736	0.252479	GAGAUGA	ENST00000369780.4|NEURL|ENSG00000107954.6|neuralized E3 ubiquitin protein ligase 1
hg19_v2_chr8_-_37756972_37757022	0.251385	GAGAUGA	ENST00000330843.4|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I) 	ENST00000522727.1|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I) 	ENST00000287263.4|RAB11FIP1|ENSG00000156675.11|RAB11 family interacting protein 1 (class I)
hg19_v2_chr8_-_18871159_18871201	0.249242	GAGAUGA	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr19_-_46234119_46234189	0.242178	GAGAUGA	ENST00000317683.3|FBXO46|ENSG00000177051.5|F-box protein 46
hg19_v2_chrX_-_48824793_48824793	0.239773	GAGAUGA	ENST00000376477.1|KCND1|ENSG00000102057.5|potassium voltage-gated channel, Shal-related subfamily, member 1
hg19_v2_chr2_-_9143786_9143942	0.239607	GAGAUGA	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr2_+_120517174_120517207	0.238864	GAGAUGA	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr5_-_147162078_147162106	0.234645	GAGAUGA	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr20_+_56964169_56964182	0.218884	GAGAUGA	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr1_-_186649543_186649563	0.214406	GAGAUGA	ENST00000367468.5|PTGS2|ENSG00000073756.7|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr9_-_20622478_20622542	0.214032	GAGAUGA	ENST00000355930.6|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENST00000380338.4|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr12_+_12764773_12764852	0.214013	GAGAUGA	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chr12_+_60083118_60083157	0.213658	GAGAUGA	ENST00000261187.4|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000543448.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr3_-_37034702_37034795	0.211517	GAGAUGA	ENST00000322716.5|EPM2AIP1|ENSG00000178567.5|EPM2A (laforin) interacting protein 1
hg19_v2_chr12_-_117319236_117319252	0.20592	GAGAUGA	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr2_-_85839146_85839198	0.196928	GAGAUGA	ENST00000306336.5|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68 	ENST00000409734.3|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68
hg19_v2_chr19_-_47128294_47128375	0.192919	GAGAUGA	ENST00000596260.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000597185.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000598865.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000594275.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000291294.2|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP)
hg19_v2_chr8_-_82024290_82024310	0.180564	GAGAUGA	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr17_+_61086917_61086921	0.167652	GAGAUGA	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr15_+_68871308_68871354	0.162741	GAGAUGA	ENST00000261861.5|CORO2B|ENSG00000103647.8|coronin, actin binding protein, 2B
hg19_v2_chr12_-_65146636_65146651	0.160441	GAGAUGA	ENST00000418919.2|GNS|ENSG00000135677.6|glucosamine (N-acetyl)-6-sulfatase
hg19_v2_chr10_+_11206925_11206993	0.157543	GAGAUGA	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr20_-_41818373_41818527	0.152715	GAGAUGA	ENST00000373187.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000356100.2|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373184.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373190.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T
hg19_v2_chr1_-_154155595_154155673	0.146924	GAGAUGA	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr6_+_132129151_132129166	0.146824	GAGAUGA	ENST00000360971.2|ENPP1|ENSG00000197594.7|ectonucleotide pyrophosphatase/phosphodiesterase 1
hg19_v2_chr11_+_76494253_76494317	0.126928	GAGAUGA	ENST00000333090.4|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chrX_+_73641286_73641400	0.121722	GAGAUGA	ENST00000587091.1|SLC16A2|ENSG00000147100.5|solute carrier family 16, member 2 (thyroid hormone transporter)
hg19_v2_chr1_+_2323260_2323329	0.108797	GAGAUGA	ENST00000378518.1|RER1|ENSG00000157916.14|retention in endoplasmic reticulum sorting receptor 1 	ENST00000605895.1|RER1|ENSG00000157916.14|retention in endoplasmic reticulum sorting receptor 1 	ENST00000378513.3|RER1|ENSG00000157916.14|retention in endoplasmic reticulum sorting receptor 1 	ENST00000306256.9|RER1|ENSG00000157916.14|retention in endoplasmic reticulum sorting receptor 1 	ENST00000378512.1|RER1|ENSG00000157916.14|retention in endoplasmic reticulum sorting receptor 1
hg19_v2_chrX_+_69664706_69664819	0.100966	GAGAUGA	ENST00000194900.4|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila) 	ENST00000374360.3|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila)
hg19_v2_chr2_+_86947296_86947434	0.0903118	GAGAUGA	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr5_-_126366500_126366547	0.0891055	GAGAUGA	ENST00000308660.5|MARCH3|ENSG00000173926.5|membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase
hg19_v2_chr19_-_47735918_47736023	0.086585	GAGAUGA	ENST00000449228.1|BBC3|ENSG00000105327.11|BCL2 binding component 3 	ENST00000300880.7|BBC3|ENSG00000105327.11|BCL2 binding component 3 	ENST00000341983.4|BBC3|ENSG00000105327.11|BCL2 binding component 3
hg19_v2_chr17_+_38219063_38219154	0.0786505	GAGAUGA	ENST00000584985.1|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000264637.4|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000450525.2|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha
hg19_v2_chr5_+_54455946_54456019	0.0749301	GAGAUGA	ENST00000503787.1|GPX8|ENSG00000164294.9|glutathione peroxidase 8 (putative) 	ENST00000296734.6|GPX8|ENSG00000164294.9|glutathione peroxidase 8 (putative) 	ENST00000515370.1|GPX8|ENSG00000164294.9|glutathione peroxidase 8 (putative)
hg19_v2_chr13_+_25946201_25946215	0.0613669	GAGAUGA	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr11_-_77532050_77532066	0.0487837	GAGAUGA	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr2_+_220042933_220042985	0.0447971	GAGAUGA	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr3_-_179754706_179754732	0.0418277	GAGAUGA	ENST00000465751.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like 	ENST00000467460.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like
hg19_v2_chr20_-_62284766_62284785	0.0398018	GAGAUGA	ENST00000370053.1|STMN3|ENSG00000197457.5|stathmin-like 3
hg19_v2_chr1_-_217262969_217262995	0.0393076	GAGAUGA	ENST00000361525.3|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr11_+_66025167_66025190	0.0288681	GAGAUGA	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr15_+_67358163_67358192	0.0281594	GAGAUGA	ENST00000327367.4|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr7_-_128695147_128695203	0.024766	GAGAUGA	ENST00000482320.1|TNPO3|ENSG00000064419.9|transportin 3 	ENST00000393245.1|TNPO3|ENSG00000064419.9|transportin 3 	ENST00000471234.1|TNPO3|ENSG00000064419.9|transportin 3
hg19_v2_chr1_+_27153173_27153230	0.0213106	GAGAUGA	ENST00000374142.4|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr1_+_51701924_51702001	0.0210408	GAGAUGA	ENST00000242719.3|RNF11|ENSG00000123091.4|ring finger protein 11
hg19_v2_chr3_-_125094093_125094198	0.00908364	GAGAUGA	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr12_-_49449107_49449107	0.00786453	GAGAUGA	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
