hg19_v2_chr4_-_176923483_176923514	5.00865	GCUACAU	ENST00000280187.7|GPM6A|ENSG00000150625.12|glycoprotein M6A 	ENST00000512509.1|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr12_+_12870055_12870119	4.21674	GCUACAU	ENST00000228872.4|CDKN1B|ENSG00000111276.6|cyclin-dependent kinase inhibitor 1B (p27, Kip1)
hg19_v2_chr1_-_41131326_41131400	4.10862	GCUACAU	ENST00000372684.3|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr5_+_140254884_140255058	3.4163	GCUACAU	ENST00000398631.2|PCDHA12|ENSG00000251664.2|protocadherin alpha 12
hg19_v2_chr4_-_69215699_69215815	3.40334	GCUACAU	ENST00000510746.1|YTHDC1|ENSG00000083896.8|YTH domain containing 1 	ENST00000344157.4|YTHDC1|ENSG00000083896.8|YTH domain containing 1 	ENST00000355665.3|YTHDC1|ENSG00000083896.8|YTH domain containing 1
hg19_v2_chr5_+_140306478_140306478	3.28213	GCUACAU	ENST00000253807.2|PCDHAC1|ENSG00000248383.3|protocadherin alpha subfamily C, 1
hg19_v2_chr5_+_140220769_140220907	3.14902	GCUACAU	ENST00000531613.1|PCDHA8|ENSG00000204962.4|protocadherin alpha 8 	ENST00000378123.3|PCDHA8|ENSG00000204962.4|protocadherin alpha 8
hg19_v2_chr5_+_140213815_140213969	3.1053	GCUACAU	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr5_+_140248518_140248689	3.03782	GCUACAU	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr9_-_111929560_111929571	2.80384	GCUACAU	ENST00000561981.2|FRRS1L|ENSG00000260230.2|ferric-chelate reductase 1-like
hg19_v2_chr5_+_140345820_140345820	2.63153	GCUACAU	ENST00000289269.5|PCDHAC2|ENSG00000243232.3|protocadherin alpha subfamily C, 2
hg19_v2_chr5_+_140227048_140227048	2.54661	GCUACAU	ENST00000532602.1|PCDHA9|ENSG00000204961.5|protocadherin alpha 9
hg19_v2_chr4_+_55524085_55524110	2.50121	GCUACAU	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr5_+_141488070_141488094	2.37516	GCUACAU	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr1_-_204380919_204380953	2.14116	GCUACAU	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr5_+_67511524_67511628	1.94296	GCUACAU	ENST00000521381.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 	ENST00000521657.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr9_-_123476719_123476810	1.89856	GCUACAU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr5_+_161274685_161274747	1.81532	GCUACAU	ENST00000428797.2|GABRA1|ENSG00000022355.10|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v2_chr14_-_36278412_36278437	1.80757	GCUACAU	ENST00000389698.3|RALGAPA1|ENSG00000174373.11|Ral GTPase activating protein, alpha subunit 1 (catalytic) 	ENST00000258840.6|RALGAPA1|ENSG00000174373.11|Ral GTPase activating protein, alpha subunit 1 (catalytic)
hg19_v2_chr5_-_175964366_175964429	1.79331	GCUACAU	ENST00000274811.4|RNF44|ENSG00000146083.7|ring finger protein 44
hg19_v2_chr5_+_140165876_140165876	1.67592	GCUACAU	ENST00000504120.2|PCDHA1|ENSG00000204970.5|protocadherin alpha 1 	ENST00000394633.3|PCDHA1|ENSG00000204970.5|protocadherin alpha 1 	ENST00000378133.3|PCDHA1|ENSG00000204970.5|protocadherin alpha 1
hg19_v2_chr18_-_53255766_53255860	1.57529	GCUACAU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr2_-_43453734_43453751	1.56381	GCUACAU	ENST00000282388.3|ZFP36L2|ENSG00000152518.5|ZFP36 ring finger protein-like 2
hg19_v2_chr2_-_160472952_160473080	1.54885	GCUACAU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chrX_-_54384425_54384495	1.40136	GCUACAU	ENST00000375169.3|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3 	ENST00000354646.2|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3
hg19_v2_chr2_-_2334888_2335053	1.37351	GCUACAU	ENST00000428368.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like 	ENST00000399161.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like
hg19_v2_chr5_+_140261703_140261854	1.35709	GCUACAU	ENST00000409494.1|PCDHA13|ENSG00000239389.3|protocadherin alpha 13 	ENST00000289272.2|PCDHA13|ENSG00000239389.3|protocadherin alpha 13
hg19_v2_chr13_+_32605437_32605473	1.19853	GCUACAU	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr16_-_69419871_69419927	1.17889	GCUACAU	ENST00000603068.1|TERF2|ENSG00000132604.6|telomeric repeat binding factor 2 	ENST00000254942.3|TERF2|ENSG00000132604.6|telomeric repeat binding factor 2 	ENST00000567296.2|TERF2|ENSG00000132604.6|telomeric repeat binding factor 2
hg19_v2_chr12_+_70636765_70636817	1.1754	GCUACAU	ENST00000552231.1|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000229195.3|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000547780.1|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000418359.3|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2
hg19_v2_chr14_+_75745477_75745680	1.1734	GCUACAU	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr14_+_74111578_74111730	1.1679	GCUACAU	ENST00000554113.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000555631.2|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000553645.2|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000311089.3|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000555919.3|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000554339.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000554871.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1
hg19_v2_chr5_+_140186647_140186773	1.12629	GCUACAU	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr1_+_114472222_114472377	1.08654	GCUACAU	ENST00000369558.1|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369561.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr2_-_213403565_213403584	0.98773	GCUACAU	ENST00000342788.4|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 	ENST00000436443.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr5_-_137090028_137090075	0.961685	GCUACAU	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr1_+_24286287_24286326	0.946622	GCUACAU	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr5_+_79703823_79703845	0.934549	GCUACAU	ENST00000338008.5|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16 	ENST00000510158.1|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16 	ENST00000505560.1|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16
hg19_v2_chr21_+_40177143_40177231	0.912117	GCUACAU	ENST00000360214.3|ETS2|ENSG00000157557.7|v-ets avian erythroblastosis virus E26 oncogene homolog 2
hg19_v2_chr13_+_88324870_88324870	0.905478	GCUACAU	ENST00000325089.6|SLITRK5|ENSG00000165300.6|SLIT and NTRK-like family, member 5
hg19_v2_chr5_-_176057365_176057517	0.886975	GCUACAU	ENST00000310112.3|SNCB|ENSG00000074317.6|synuclein, beta
hg19_v2_chr1_-_224033596_224033697	0.851808	GCUACAU	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr6_-_90062543_90062567	0.818157	GCUACAU	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chrX_+_146993449_146993498	0.813782	GCUACAU	ENST00000218200.8|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370471.3|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370477.1|FMR1|ENSG00000102081.9|fragile X mental retardation 1
hg19_v2_chr1_+_97187318_97187380	0.77395	GCUACAU	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr22_-_39151463_39151639	0.732193	GCUACAU	ENST00000405510.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000433561.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr3_+_169684553_169684616	0.675447	GCUACAU	ENST00000337002.4|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae) 	ENST00000480708.1|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae)
hg19_v2_chr2_-_24149977_24150007	0.589756	GCUACAU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr22_+_21271714_21271770	0.562564	GCUACAU	ENST00000354336.3|CRKL|ENSG00000099942.8|v-crk avian sarcoma virus CT10 oncogene homolog-like
hg19_v2_chr9_-_74980113_74980163	0.552735	GCUACAU	ENST00000376962.5|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376960.4|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000237937.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr17_-_58603568_58603610	0.551535	GCUACAU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr14_+_77228532_77228672	0.551459	GCUACAU	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr12_+_111471828_111471975	0.541886	GCUACAU	ENST00000261726.6|CUX2|ENSG00000111249.9|cut-like homeobox 2
hg19_v2_chr12_-_123011536_123011547	0.527823	GCUACAU	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chr10_+_73975742_73975830	0.523115	GCUACAU	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr12_+_6898638_6898669	0.502595	GCUACAU	ENST00000011653.4|CD4|ENSG00000010610.5|CD4 molecule
hg19_v2_chr8_-_93115445_93115462	0.494856	GCUACAU	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr2_+_5832799_5832799	0.48692	GCUACAU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chrX_-_72434628_72434722	0.480356	GCUACAU	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr4_+_72204755_72204778	0.478682	GCUACAU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr12_+_113229737_113229821	0.433606	GCUACAU	ENST00000551052.1|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse) 	ENST00000415485.3|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse)
hg19_v2_chr5_+_140235469_140235634	0.432473	GCUACAU	ENST00000506939.2|PCDHA10|ENSG00000250120.2|protocadherin alpha 10 	ENST00000307360.5|PCDHA10|ENSG00000250120.2|protocadherin alpha 10
hg19_v2_chrX_-_110655391_110655449	0.428818	GCUACAU	ENST00000356915.2|DCX|ENSG00000077279.12|doublecortin 	ENST00000356220.3|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr2_-_69870835_69870853	0.420823	GCUACAU	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr12_-_121342170_121342183	0.419851	GCUACAU	ENST00000353487.2|SPPL3|ENSG00000157837.11|signal peptide peptidase like 3
hg19_v2_chr1_+_220701456_220701574	0.412642	GCUACAU	ENST00000366918.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1 	ENST00000402574.1|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr16_-_66785699_66785759	0.411408	GCUACAU	ENST00000258198.2|DYNC1LI2|ENSG00000135720.8|dynein, cytoplasmic 1, light intermediate chain 2
hg19_v2_chr1_+_63833261_63833282	0.40201	GCUACAU	ENST00000371108.4|ALG6|ENSG00000088035.11|ALG6, alpha-1,3-glucosyltransferase
hg19_v2_chr10_-_118764862_118764887	0.372883	GCUACAU	ENST00000260777.10|KIAA1598|ENSG00000187164.13|KIAA1598
hg19_v2_chr3_+_47324424_47324447	0.368147	GCUACAU	ENST00000437353.1|KLHL18|ENSG00000114648.7|kelch-like family member 18 	ENST00000232766.5|KLHL18|ENSG00000114648.7|kelch-like family member 18 	ENST00000455924.2|KLHL18|ENSG00000114648.7|kelch-like family member 18
hg19_v2_chr9_-_115095883_115095947	0.366028	GCUACAU	ENST00000450374.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374255.2|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000334318.6|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374257.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3
hg19_v2_chr4_+_144257915_144258009	0.363666	GCUACAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr6_+_146348782_146348809	0.362389	GCUACAU	ENST00000361719.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000392299.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr13_-_103053946_103054124	0.352359	GCUACAU	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr8_+_61591337_61591393	0.351493	GCUACAU	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr18_+_46065393_46065444	0.350336	GCUACAU	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr7_+_138916231_138916231	0.349502	GCUACAU	ENST00000473989.3|UBN2|ENSG00000157741.10|ubinuclein 2 	ENST00000288561.8|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr16_+_67596310_67596353	0.34892	GCUACAU	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr4_+_699537_699600	0.345799	GCUACAU	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr12_-_118498958_118499021	0.321587	GCUACAU	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr10_+_1095416_1095482	0.320675	GCUACAU	ENST00000358220.1|WDR37|ENSG00000047056.10|WD repeat domain 37
hg19_v2_chr4_+_144434584_144434709	0.305428	GCUACAU	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr8_-_116681221_116681236	0.303831	GCUACAU	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr12_+_62860581_62860629	0.301878	GCUACAU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr11_+_119076745_119076792	0.299234	GCUACAU	ENST00000264033.4|CBL|ENSG00000110395.4|Cbl proto-oncogene, E3 ubiquitin protein ligase
hg19_v2_chr9_+_103790991_103791001	0.288558	GCUACAU	ENST00000374874.3|LPPR1|ENSG00000148123.10|Lipid phosphate phosphatase-related protein type 1
hg19_v2_chr17_+_61627814_61627871	0.288315	GCUACAU	ENST00000310827.4|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000431926.1|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000415273.2|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7
hg19_v2_chr17_-_27278304_27278408	0.288055	GCUACAU	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr15_+_90808919_90808937	0.287397	GCUACAU	ENST00000379095.3|NGRN|ENSG00000182768.7|neugrin, neurite outgrowth associated
hg19_v2_chr16_+_12070567_12070623	0.265307	GCUACAU	ENST00000566228.1|SNX29|ENSG00000048471.9|sorting nexin 29
hg19_v2_chr2_+_70142189_70142223	0.262271	GCUACAU	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr5_+_140201183_140201361	0.25971	GCUACAU	ENST00000529619.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000529859.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000378126.3|PCDHA5|ENSG00000204965.4|protocadherin alpha 5
hg19_v2_chr1_+_150980889_150980965	0.259498	GCUACAU	ENST00000450884.1|PRUNE|ENSG00000143363.11|prune exopolyphosphatase 	ENST00000271620.3|PRUNE|ENSG00000143363.11|prune exopolyphosphatase 	ENST00000271619.8|PRUNE|ENSG00000143363.11|prune exopolyphosphatase 	ENST00000368937.1|PRUNE|ENSG00000143363.11|prune exopolyphosphatase 	ENST00000431193.1|PRUNE|ENSG00000143363.11|prune exopolyphosphatase 	ENST00000368936.1|PRUNE|ENSG00000143363.11|prune exopolyphosphatase
hg19_v2_chr1_-_207224307_207224422	0.25767	GCUACAU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr4_-_185395672_185395734	0.257033	GCUACAU	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr5_+_140207536_140207650	0.255638	GCUACAU	ENST00000529310.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6 	ENST00000527624.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6
hg19_v2_chrX_+_23352133_23352229	0.252801	GCUACAU	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr8_+_28747884_28747938	0.237871	GCUACAU	ENST00000287701.10|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000444075.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000403668.2|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000519662.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000558662.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000523613.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000560599.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000397358.3|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr12_+_94542459_94542513	0.228196	GCUACAU	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr9_-_23821273_23821313	0.224768	GCUACAU	ENST00000380110.4|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr10_-_99094458_99094500	0.223757	GCUACAU	ENST00000371019.2|FRAT2|ENSG00000181274.5|frequently rearranged in advanced T-cell lymphomas 2
hg19_v2_chr6_+_16129308_16129402	0.223551	GCUACAU	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chr1_-_117210290_117210376	0.222812	GCUACAU	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chr11_+_9406169_9406210	0.212546	GCUACAU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr14_+_105781048_105781101	0.201253	GCUACAU	ENST00000458164.2|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2 	ENST00000447393.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr5_-_133512683_133512729	0.201016	GCUACAU	ENST00000353411.6|SKP1|ENSG00000113558.14|S-phase kinase-associated protein 1
hg19_v2_chr22_-_38380543_38380569	0.199786	GCUACAU	ENST00000396884.2|SOX10|ENSG00000100146.12|SRY (sex determining region Y)-box 10
hg19_v2_chr13_+_20532807_20532841	0.197359	GCUACAU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr4_-_87281224_87281375	0.193025	GCUACAU	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr14_-_27066636_27066701	0.189026	GCUACAU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr3_+_183353356_183353450	0.188207	GCUACAU	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr2_-_68479614_68479685	0.18266	GCUACAU	ENST00000234310.3|PPP3R1|ENSG00000221823.6|protein phosphatase 3, regulatory subunit B, alpha
hg19_v2_chr3_+_16926441_16926463	0.182012	GCUACAU	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr8_+_58907104_58907131	0.180639	GCUACAU	ENST00000361488.3|FAM110B|ENSG00000169122.7|family with sequence similarity 110, member B
hg19_v2_chr12_+_56401268_56401443	0.179228	GCUACAU	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr8_-_133493200_133493352	0.179191	GCUACAU	ENST00000388996.4|KCNQ3|ENSG00000184156.11|potassium voltage-gated channel, KQT-like subfamily, member 3
hg19_v2_chr20_-_48532019_48532045	0.173355	GCUACAU	ENST00000289431.5|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr5_-_168006591_168006638	0.160065	GCUACAU	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr17_-_74733404_74733456	0.151277	GCUACAU	ENST00000508921.3|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000583836.1|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000358156.6|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000392485.2|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2 	ENST00000359995.5|SRSF2|ENSG00000161547.10|serine/arginine-rich splicing factor 2
hg19_v2_chr10_-_94003003_94003013	0.146203	GCUACAU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr18_+_43753974_43754019	0.144845	GCUACAU	ENST00000282059.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25 	ENST00000321319.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25
hg19_v2_chr2_-_152955537_152955593	0.141302	GCUACAU	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr5_-_150948414_150948505	0.140991	GCUACAU	ENST00000261800.5|FAT2|ENSG00000086570.8|FAT atypical cadherin 2
hg19_v2_chrX_-_106959631_106959775	0.140114	GCUACAU	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr12_-_76478686_76478813	0.139313	GCUACAU	ENST00000261182.8|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr13_+_53226963_53227023	0.138452	GCUACAU	ENST00000343788.6|SUGT1|ENSG00000165416.10|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 	ENST00000535397.1|SUGT1|ENSG00000165416.10|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 	ENST00000310528.8|SUGT1|ENSG00000165416.10|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
hg19_v2_chr1_+_222791417_222791455	0.13797	GCUACAU	ENST00000344922.5|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344441.6|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344507.1|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3
hg19_v2_chr12_+_56473628_56473680	0.136678	GCUACAU	ENST00000549282.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000549061.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000267101.3|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr12_-_104532062_104532071	0.134658	GCUACAU	ENST00000240055.3|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr3_-_135914615_135914701	0.134312	GCUACAU	ENST00000309993.2|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr2_+_60983361_60983418	0.131599	GCUACAU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr6_-_62996066_62996137	0.130885	GCUACAU	ENST00000281156.4|KHDRBS2|ENSG00000112232.8|KH domain containing, RNA binding, signal transduction associated 2
hg19_v2_chr11_-_70507901_70507958	0.128439	GCUACAU	ENST00000449833.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2 	ENST00000357171.3|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2 	ENST00000449116.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr6_+_37225540_37225558	0.127354	GCUACAU	ENST00000373491.3|TBC1D22B|ENSG00000065491.8|TBC1 domain family, member 22B
hg19_v2_chr16_+_54964740_54964789	0.126178	GCUACAU	ENST00000394636.4|IRX5|ENSG00000176842.10|iroquois homeobox 5
hg19_v2_chr4_-_55991752_55991770	0.12463	GCUACAU	ENST00000263923.4|KDR|ENSG00000128052.8|kinase insert domain receptor (a type III receptor tyrosine kinase)
hg19_v2_chr3_+_182511266_182511308	0.122105	GCUACAU	ENST00000323116.5|ATP11B|ENSG00000058063.11|ATPase, class VI, type 11B 	ENST00000493826.1|ATP11B|ENSG00000058063.11|ATPase, class VI, type 11B
hg19_v2_chr3_-_28390581_28390618	0.120662	GCUACAU	ENST00000479665.1|AZI2|ENSG00000163512.9|5-azacytidine induced 2
hg19_v2_chr10_-_11653753_11653806	0.115256	GCUACAU	ENST00000609104.1|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr6_+_45389893_45389914	0.109141	GCUACAU	ENST00000371432.3|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr12_+_20522179_20522203	0.098844	GCUACAU	ENST00000359062.3|PDE3A|ENSG00000172572.6|phosphodiesterase 3A, cGMP-inhibited
hg19_v2_chr2_+_111878483_111878506	0.0925967	GCUACAU	ENST00000308659.8|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000357757.2|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000393253.2|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000337565.5|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator) 	ENST00000393256.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr8_+_23386305_23386318	0.0905533	GCUACAU	ENST00000519973.1|SLC25A37|ENSG00000147454.9|solute carrier family 25 (mitochondrial iron transporter), member 37
hg19_v2_chr15_+_44829255_44829331	0.0880499	GCUACAU	ENST00000261868.5|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J 	ENST00000424492.3|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J
hg19_v2_chr5_+_140180635_140180783	0.0802964	GCUACAU	ENST00000522353.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3 	ENST00000532566.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3
hg19_v2_chr1_-_154155595_154155673	0.0799042	GCUACAU	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr17_+_42836329_42836399	0.0767987	GCUACAU	ENST00000200557.6|ADAM11|ENSG00000073670.9|ADAM metallopeptidase domain 11
hg19_v2_chr8_+_106330920_106330979	0.0765856	GCUACAU	ENST00000407775.2|ZFPM2|ENSG00000169946.9|zinc finger protein, FOG family member 2
hg19_v2_chr6_+_163835669_163835693	0.0736835	GCUACAU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr2_+_113033164_113033219	0.0705145	GCUACAU	ENST00000409871.1|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6 	ENST00000343936.4|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6
hg19_v2_chr11_+_118754475_118754552	0.0659836	GCUACAU	ENST00000292174.4|CXCR5|ENSG00000160683.4|chemokine (C-X-C motif) receptor 5
hg19_v2_chr14_-_91720224_91720378	0.0651908	GCUACAU	ENST00000238699.3|GPR68|ENSG00000119714.6|G protein-coupled receptor 68 	ENST00000531499.2|GPR68|ENSG00000119714.6|G protein-coupled receptor 68
hg19_v2_chr14_-_99737565_99737617	0.0649161	GCUACAU	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr16_+_68119440_68119561	0.0637456	GCUACAU	ENST00000346183.3|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 	ENST00000329524.4|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
hg19_v2_chr2_+_178077477_178077525	0.0598146	GCUACAU	ENST00000411529.2|HNRNPA3|ENSG00000170144.14|heterogeneous nuclear ribonucleoprotein A3 	ENST00000435711.1|HNRNPA3|ENSG00000170144.14|heterogeneous nuclear ribonucleoprotein A3
hg19_v2_chr6_+_44355257_44355315	0.0582776	GCUACAU	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr16_-_11350036_11350067	0.057662	GCUACAU	ENST00000332029.2|SOCS1|ENSG00000185338.4|suppressor of cytokine signaling 1
hg19_v2_chr5_+_140174429_140174550	0.0549127	GCUACAU	ENST00000520672.2|PCDHA2|ENSG00000204969.5|protocadherin alpha 2 	ENST00000378132.1|PCDHA2|ENSG00000204969.5|protocadherin alpha 2 	ENST00000526136.1|PCDHA2|ENSG00000204969.5|protocadherin alpha 2
hg19_v2_chr6_+_152011628_152011642	0.0527535	GCUACAU	ENST00000404742.1|ESR1|ENSG00000091831.17|estrogen receptor 1 	ENST00000440973.1|ESR1|ENSG00000091831.17|estrogen receptor 1
hg19_v2_chr17_+_41177220_41177282	0.0517065	GCUACAU	ENST00000587250.2|RND2|ENSG00000108830.7|Rho family GTPase 2 	ENST00000544533.1|RND2|ENSG00000108830.7|Rho family GTPase 2
hg19_v2_chr7_+_77325738_77325789	0.0494004	GCUACAU	ENST00000334955.8|RSBN1L|ENSG00000187257.10|round spermatid basic protein 1-like
hg19_v2_chr14_+_72399833_72399952	0.0464035	GCUACAU	ENST00000553530.1|RGS6|ENSG00000182732.12|regulator of G-protein signaling 6 	ENST00000556437.1|RGS6|ENSG00000182732.12|regulator of G-protein signaling 6
hg19_v2_chr6_-_111804393_111804436	0.0460946	GCUACAU	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr6_-_16761678_16761721	0.0431381	GCUACAU	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr1_-_24306798_24306828	0.0417061	GCUACAU	ENST00000374452.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000492112.2|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000343255.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000344989.6|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10
hg19_v2_chr11_+_33278811_33279133	0.0365275	GCUACAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr1_+_36273743_36273773	0.0362294	GCUACAU	ENST00000373210.3|AGO4|ENSG00000134698.10|argonaute RISC catalytic component 4
hg19_v2_chr9_+_96338860_96338939	0.03403	GCUACAU	ENST00000375376.4|PHF2|ENSG00000197724.6|PHD finger protein 2
hg19_v2_chr9_-_73736511_73736546	0.0167615	GCUACAU	ENST00000377110.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377111.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr10_+_22610124_22610188	0.011236	GCUACAU	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr7_-_105029329_105029376	0.00991979	GCUACAU	ENST00000393651.3|SRPK2|ENSG00000135250.12|SRSF protein kinase 2 	ENST00000460391.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr14_-_64010046_64010107	0.00495495	GCUACAU	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr5_+_139493665_139493718	0.00493665	GCUACAU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr7_+_107110488_107110515	0.0043558	GCUACAU	ENST00000304402.4|GPR22|ENSG00000172209.4|G protein-coupled receptor 22
