hg19_v2_chr3_+_158787041_158787074	18.4285	HOXD4	ENST00000471575.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000476809.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000485419.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chrX_-_13835147_13835224	15.699	HOXD4	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chrX_-_92928557_92928613	14.4865	HOXD4	ENST00000373079.3|NAP1L3|ENSG00000186310.9|nucleosome assembly protein 1-like 3 	ENST00000475430.2|NAP1L3|ENSG00000186310.9|nucleosome assembly protein 1-like 3
hg19_v2_chrX_+_56590002_56590072	12.9508	HOXD4	ENST00000338222.5|UBQLN2|ENSG00000188021.7|ubiquilin 2
hg19_v2_chr18_-_21891460_21891506	12.613	HOXD4	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr7_-_137028498_137028520	10.549	HOXD4	ENST00000393083.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr14_+_90863327_90863356	9.87255	HOXD4	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr5_+_67586465_67586534	9.53542	HOXD4	ENST00000336483.5|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr1_+_84630645_84630652	9.48409	HOXD4	ENST00000394839.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr17_-_73844722_73844751	9.4623	HOXD4	ENST00000586257.1|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr7_-_137028534_137028611	9.38901	HOXD4	ENST00000348225.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr9_-_93405352_93405386	8.9655	HOXD4	ENST00000375765.3|DIRAS2|ENSG00000165023.5|DIRAS family, GTP-binding RAS-like 2
hg19_v2_chr15_+_84115868_84115980	8.60625	HOXD4	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr17_-_29624343_29624429	8.28409	HOXD4	ENST00000247271.4|OMG|ENSG00000126861.4|oligodendrocyte myelin glycoprotein
hg19_v2_chr8_-_18871159_18871201	7.895	HOXD4	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr13_-_24007815_24007872	6.76372	HOXD4	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr2_+_187371440_187371567	6.7141	HOXD4	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr16_-_29910853_29910903	6.56452	HOXD4	ENST00000308713.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr3_+_111718173_111718195	6.53421	HOXD4	ENST00000494932.1|TAGLN3|ENSG00000144834.8|transgelin 3
hg19_v2_chr8_-_102803163_102803211	6.25484	HOXD4	ENST00000523645.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000520346.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000220931.6|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522448.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522951.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522252.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000519098.1|NCALD|ENSG00000104490.13|neurocalcin delta
hg19_v2_chr2_-_225434538_225434545	6.01049	HOXD4	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr5_+_140762268_140762467	5.91207	HOXD4	ENST00000518325.1|PCDHGA7|ENSG00000253537.1|protocadherin gamma subfamily A, 7
hg19_v2_chr7_+_16793160_16793160	5.76138	HOXD4	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr7_-_104909435_104909535	5.3932	HOXD4	ENST00000357311.3|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr5_-_179499108_179499147	5.0287	HOXD4	ENST00000521389.1|RNF130|ENSG00000113269.9|ring finger protein 130
hg19_v2_chr16_+_103816_103900	4.83702	HOXD4	ENST00000383018.3|SNRNP25|ENSG00000161981.6|small nuclear ribonucleoprotein 25kDa (U11/U12) 	ENST00000417493.1|SNRNP25|ENSG00000161981.6|small nuclear ribonucleoprotein 25kDa (U11/U12)
hg19_v2_chr12_-_118628350_118628371	4.81849	HOXD4	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr17_+_66521936_66522026	4.74194	HOXD4	ENST00000592800.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chr9_+_470288_470336	4.63002	HOXD4	ENST00000382303.1|KANK1|ENSG00000107104.14|KN motif and ankyrin repeat domains 1
hg19_v2_chr3_-_18480260_18480269	4.58747	HOXD4	ENST00000454909.2|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr2_+_27886330_27886344	4.49924	HOXD4	ENST00000326019.6|SLC4A1AP|ENSG00000163798.9|solute carrier family 4 (anion exchanger), member 1, adaptor protein
hg19_v2_chr9_-_131790550_131790634	4.32876	HOXD4	ENST00000372554.4|SH3GLB2|ENSG00000148341.13|SH3-domain GRB2-like endophilin B2 	ENST00000372564.3|SH3GLB2|ENSG00000148341.13|SH3-domain GRB2-like endophilin B2
hg19_v2_chr11_-_77790865_77790934	4.17355	HOXD4	ENST00000534029.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000525085.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000527806.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000528251.1|NDUFC2-KCTD14|ENSG00000259112.1|NDUFC2-KCTD14 readthrough 	ENST00000528164.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000530054.1|NDUFC2-KCTD14|ENSG00000259112.1|NDUFC2-KCTD14 readthrough
hg19_v2_chr7_-_22233442_22233527	4.10174	HOXD4	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr5_+_140743859_140743898	4.08926	HOXD4	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr17_-_78450398_78450413	4.08647	HOXD4	ENST00000306773.4|NPTX1|ENSG00000171246.5|neuronal pentraxin I
hg19_v2_chr1_-_101360331_101360373	4.058	HOXD4	ENST00000416479.1|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2 	ENST00000370113.3|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2
hg19_v2_chr5_-_179499086_179499105	4.0107	HOXD4	ENST00000261947.4|RNF130|ENSG00000113269.9|ring finger protein 130
hg19_v2_chr11_-_36310958_36310999	3.99287	HOXD4	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr13_+_20207782_20207841	3.59359	HOXD4	ENST00000414242.2|MPHOSPH8|ENSG00000196199.9|M-phase phosphoprotein 8 	ENST00000361479.5|MPHOSPH8|ENSG00000196199.9|M-phase phosphoprotein 8
hg19_v2_chr2_-_166060552_166060566	3.50706	HOXD4	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr7_+_101460882_101460923	3.34987	HOXD4	ENST00000292535.7|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000549414.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000550008.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000546411.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000556210.1|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chr1_+_67632083_67632169	3.30624	HOXD4	ENST00000347310.5|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000371002.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr2_-_160473114_160473203	3.26195	HOXD4	ENST00000392783.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr14_-_101036119_101036131	3.24098	HOXD4	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr14_+_78174414_78174521	3.19755	HOXD4	ENST00000557342.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000238688.5|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000557623.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000557431.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000556831.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000556375.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein 	ENST00000553981.1|SLIRP|ENSG00000119705.5|SRA stem-loop interacting RNA binding protein
hg19_v2_chr16_-_15736953_15737025	3.07406	HOXD4	ENST00000548025.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000551742.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000602337.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000344181.3|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000396368.3|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr14_+_29236269_29236287	2.99905	HOXD4	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr2_-_176046391_176046445	2.96728	HOXD4	ENST00000392541.3|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) 	ENST00000409194.1|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
hg19_v2_chr2_-_207024233_207024327	2.95808	HOXD4	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr15_-_65809991_65810037	2.94125	HOXD4	ENST00000559526.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000358939.4|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000560665.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000321118.7|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000339244.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000300141.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr3_+_173116225_173116242	2.74552	HOXD4	ENST00000457714.1|NLGN1|ENSG00000169760.13|neuroligin 1
hg19_v2_chr3_+_142342228_142342236	2.61891	HOXD4	ENST00000337777.3|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr17_-_7218631_7218711	2.60677	HOXD4	ENST00000577040.2|GPS2|ENSG00000132522.11|G protein pathway suppressor 2 	ENST00000389167.5|GPS2|ENSG00000132522.11|G protein pathway suppressor 2 	ENST00000391950.3|GPS2|ENSG00000132522.11|G protein pathway suppressor 2
hg19_v2_chr2_-_166060571_166060582	2.54054	HOXD4	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr15_+_80364901_80364932	2.32047	HOXD4	ENST00000560228.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559835.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559775.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558688.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560392.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560976.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558272.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558390.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr5_-_78809950_78810040	2.31194	HOXD4	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr17_+_47448102_47448102	2.27882	HOXD4	ENST00000576461.1|RP11-81K2.1|ENSG00000262039.1|Uncharacterized protein
hg19_v2_chr1_-_87380002_87380098	2.25357	HOXD4	ENST00000331835.5|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA.
hg19_v2_chr1_-_87379785_87379830	2.22062	HOXD4	ENST00000401030.3|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA. 	ENST00000370554.1|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA.
hg19_v2_chr12_+_16109519_16109568	2.1927	HOXD4	ENST00000526530.1|DERA|ENSG00000023697.8|deoxyribose-phosphate aldolase (putative)
hg19_v2_chr11_+_101983176_101983245	2.14525	HOXD4	ENST00000524575.1|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr1_-_36948879_36948879	2.0831	HOXD4	ENST00000373106.1|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000373104.1|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000373103.1|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte)
hg19_v2_chr5_+_95066823_95066879	2.02969	HOXD4	ENST00000506817.1|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3 	ENST00000379982.3|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3
hg19_v2_chrX_-_10645773_10645795	2.01096	HOXD4	ENST00000453318.2|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr21_-_27423339_27423352	1.97295	HOXD4	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr11_-_104972158_104972190	1.96922	HOXD4	ENST00000598974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000593315.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000594519.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000415981.2|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525374.1|CARD16|ENSG00000204397.3|caspase recruitment domain family, member 16 	ENST00000375707.1|CARD17|ENSG00000255221.2|caspase recruitment domain family, member 17
hg19_v2_chr17_-_50235423_50235463	1.93981	HOXD4	ENST00000340813.6|CA10|ENSG00000154975.9|carbonic anhydrase X
hg19_v2_chr5_+_141346385_141346437	1.93924	HOXD4	ENST00000513019.1|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000356143.1|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr3_-_149095652_149095652	1.91631	HOXD4	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr10_-_50970322_50970381	1.83644	HOXD4	ENST00000374103.4|OGDHL|ENSG00000197444.5|oxoglutarate dehydrogenase-like
hg19_v2_chr18_+_32556892_32557026	1.82312	HOXD4	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr3_-_11623804_11623865	1.82086	HOXD4	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr12_+_12938541_12938600	1.78168	HOXD4	ENST00000356591.4|APOLD1|ENSG00000178878.8|apolipoprotein L domain containing 1
hg19_v2_chr16_+_84801852_84801877	1.77007	HOXD4	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr2_-_160472952_160473080	1.71911	HOXD4	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr5_+_69321074_69321200	1.62911	HOXD4	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr10_+_18629628_18629672	1.62156	HOXD4	ENST00000377329.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr19_+_48828788_48828865	1.60841	HOXD4	ENST00000594198.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3 	ENST00000597279.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3 	ENST00000593437.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3
hg19_v2_chr7_+_112063192_112063237	1.60808	HOXD4	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr10_+_13652047_13652047	1.57036	HOXD4	ENST00000601460.1|RP11-295P9.3|ENSG00000239665.4|Uncharacterized protein
hg19_v2_chr13_+_37581115_37581115	1.54756	HOXD4	ENST00000481013.1|EXOSC8|ENSG00000120699.8|exosome component 8
hg19_v2_chr3_-_149293990_149294039	1.45529	HOXD4	ENST00000472417.1|WWTR1|ENSG00000018408.10|WW domain containing transcription regulator 1
hg19_v2_chr10_+_48189612_48189612	1.38226	HOXD4	ENST00000453919.1|AGAP9|ENSG00000198035.9|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
hg19_v2_chr19_+_48828582_48828637	1.31288	HOXD4	ENST00000270221.6|EMP3|ENSG00000142227.6|epithelial membrane protein 3 	ENST00000596315.1|EMP3|ENSG00000142227.6|epithelial membrane protein 3
hg19_v2_chr14_-_24911868_24911902	1.31007	HOXD4	ENST00000554698.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr17_-_60142609_60142657	1.29279	HOXD4	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr15_-_55700457_55700520	1.18278	HOXD4	ENST00000442196.3|CCPG1|ENSG00000260916.1|cell cycle progression 1 	ENST00000563171.1|CCPG1|ENSG00000260916.1|cell cycle progression 1 	ENST00000425574.3|CCPG1|ENSG00000260916.1|cell cycle progression 1
hg19_v2_chr4_-_143227088_143227105	1.17566	HOXD4	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr1_+_144146808_144146812	1.16014	HOXD4	ENST00000369190.5|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000412624.2|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000369365.3|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8
hg19_v2_chr1_-_120935894_120935950	1.09273	HOXD4	ENST00000369383.4|FCGR1B|ENSG00000198019.8|Fc fragment of IgG, high affinity Ib, receptor (CD64) 	ENST00000369384.4|FCGR1B|ENSG00000198019.8|Fc fragment of IgG, high affinity Ib, receptor (CD64)
hg19_v2_chr3_+_197518100_197518150	1.07629	HOXD4	ENST00000438796.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000414675.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000441090.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000334859.4|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000425562.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3
hg19_v2_chr14_-_24911971_24912015	1.03857	HOXD4	ENST00000555365.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1 	ENST00000399395.3|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr2_+_204571375_204571432	0.994886	HOXD4	ENST00000374478.4|CD28|ENSG00000178562.13|CD28 molecule
hg19_v2_chr6_-_87804815_87804830	0.968448	HOXD4	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr5_-_55412774_55412784	0.961818	HOXD4	ENST00000434982.2|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55
hg19_v2_chr16_+_24549014_24549082	0.935903	HOXD4	ENST00000564314.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6 	ENST00000567686.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr5_+_179921344_179921423	0.913895	HOXD4	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr5_+_52083730_52083821	0.85614	HOXD4	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr15_+_64386261_64386322	0.834647	HOXD4	ENST00000560829.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr1_-_190446759_190446774	0.825231	HOXD4	ENST00000367462.3|BRINP3|ENSG00000162670.8|bone morphogenetic protein/retinoic acid inducible neural-specific 3
hg19_v2_chr12_+_112279782_112279871	0.81914	HOXD4	ENST00000550735.2|MAPKAPK5|ENSG00000089022.9|mitogen-activated protein kinase-activated protein kinase 5
hg19_v2_chr4_-_143226979_143226990	0.814129	HOXD4	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr7_+_55433131_55433142	0.806647	HOXD4	ENST00000254770.2|LANCL2|ENSG00000132434.5|LanC lantibiotic synthetase component C-like 2 (bacterial)
hg19_v2_chr15_-_55700522_55700708	0.806437	HOXD4	ENST00000564092.1|CCPG1|ENSG00000260916.1|cell cycle progression 1 	ENST00000310958.6|CCPG1|ENSG00000260916.1|cell cycle progression 1
hg19_v2_chr12_+_21168630_21168630	0.80314	HOXD4	ENST00000421593.2|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr16_-_21663919_21663936	0.783694	HOXD4	ENST00000569602.1|IGSF6|ENSG00000140749.7|immunoglobulin superfamily, member 6
hg19_v2_chr2_+_109237717_109237729	0.754189	HOXD4	ENST00000409441.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr12_-_49245936_49245955	0.742872	HOXD4	ENST00000308025.3|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
hg19_v2_chr15_-_56209306_56209344	0.665438	HOXD4	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr12_+_9980113_9980133	0.662801	HOXD4	ENST00000537723.1|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1
hg19_v2_chr18_-_61311485_61311532	0.650186	HOXD4	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr5_-_10761206_10761421	0.542628	HOXD4	ENST00000432074.2|DAP|ENSG00000112977.11|death-associated protein 	ENST00000230895.6|DAP|ENSG00000112977.11|death-associated protein
hg19_v2_chrX_+_70752917_70752933	0.514281	HOXD4	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr2_-_99279928_99279942	0.491456	HOXD4	ENST00000414521.2|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr2_+_170440844_170440897	0.485324	HOXD4	ENST00000260970.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000433207.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000409714.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000462903.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G)
hg19_v2_chr1_+_87380299_87380475	0.46945	HOXD4	ENST00000370551.4|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1 	ENST00000370550.5|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1
hg19_v2_chr6_+_46761118_46761132	0.442056	HOXD4	ENST00000230588.4|MEP1A|ENSG00000112818.5|meprin A, alpha (PABA peptide hydrolase)
hg19_v2_chr4_-_46996424_46996424	0.434536	HOXD4	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr3_+_69812877_69812962	0.431412	HOXD4	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr18_-_19283649_19283830	0.40672	HOXD4	ENST00000584464.1|ABHD3|ENSG00000158201.5|abhydrolase domain containing 3 	ENST00000578270.1|ABHD3|ENSG00000158201.5|abhydrolase domain containing 3
hg19_v2_chr7_+_77428149_77428220	0.376188	HOXD4	ENST00000415251.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000275575.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr17_-_41132410_41132545	0.371381	HOXD4	ENST00000409446.3|PTGES3L|ENSG00000267060.1|prostaglandin E synthase 3 (cytosolic)-like 	ENST00000409399.1|PTGES3L-AARSD1|ENSG00000108825.13|PTGES3L-AARSD1 readthrough 	ENST00000421990.2|PTGES3L-AARSD1|ENSG00000108825.13|PTGES3L-AARSD1 readthrough 	ENST00000453594.1|PTGES3L|ENSG00000267060.1|prostaglandin E synthase 3 (cytosolic)-like
hg19_v2_chr1_+_197237352_197237543	0.352432	HOXD4	ENST00000538660.1|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila) 	ENST00000367400.3|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila) 	ENST00000367399.2|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila)
hg19_v2_chr1_+_115572415_115572451	0.2643	HOXD4	ENST00000256592.1|TSHB|ENSG00000134200.2|thyroid stimulating hormone, beta
hg19_v2_chr2_+_234590556_234590584	0.244636	HOXD4	ENST00000373426.3|UGT1A7|ENSG00000244122.2|UDP glucuronosyltransferase 1 family, polypeptide A7
hg19_v2_chr14_-_99947168_99947232	0.24149	HOXD4	ENST00000331768.5|SETD3|ENSG00000183576.8|SET domain containing 3
hg19_v2_chr2_+_234826016_234826050	0.223281	HOXD4	ENST00000324695.4|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8 	ENST00000433712.2|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8
hg19_v2_chr3_+_51575596_51575596	0.221155	HOXD4	ENST00000409535.2|RAD54L2|ENSG00000164080.9|RAD54-like 2 (S. cerevisiae)
hg19_v2_chr18_-_19994830_19994830	0.198228	HOXD4	ENST00000525417.1|CTAGE1|ENSG00000212710.3|cutaneous T-cell lymphoma-associated antigen 1
hg19_v2_chr13_+_33160553_33160564	0.185974	HOXD4	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr1_-_231560790_231560790	0.185842	HOXD4	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr2_+_196313239_196313256	0.16916	HOXD4	ENST00000413290.1|AC064834.1|ENSG00000224099.1|AC064834.1
hg19_v2_chr5_-_137475071_137475122	0.167952	HOXD4	ENST00000265191.2|NME5|ENSG00000112981.3|NME/NM23 family member 5
hg19_v2_chr2_+_166095898_166095940	0.153838	HOXD4	ENST00000424833.1|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000375437.2|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000357398.3|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr6_-_44281043_44281091	0.137025	HOXD4	ENST00000244571.4|AARS2|ENSG00000124608.4|alanyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr6_+_53659746_53659817	0.0971256	HOXD4	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr7_+_77428066_77428132	0.0870734	HOXD4	ENST00000422959.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000307305.8|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000424760.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr12_-_112279694_112279710	0.0675471	HOXD4	ENST00000443596.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1 	ENST00000442119.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1
hg19_v2_chr20_+_32150140_32150230	0.018637	HOXD4	ENST00000344201.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000346541.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397800.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397798.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000492345.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
