hg19_v1_chr11_+_7618416_7618421	0.856647	MSX1,2.p2	AK296718|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)
hg19_v1_chr3_-_126327397_126327397	0.437816	MSX1,2.p2	AB113648|TXNRD3NB|645840|thioredoxin reductase 3 neighbor	NM_001039783|TXNRD3NB|645840|thioredoxin reductase 3 neighbor
hg19_v1_chr9_-_116840551_116840587	0.418277	MSX1,2.p2	X04225|AMBP|259|alpha-1-microglobulin/bikunin precursor	AK290837|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr4_+_88896838_88896866	0.386498	MSX1,2.p2	BX648003|SPP1|6696|secreted phosphoprotein 1	J04765|SPP1|6696|secreted phosphoprotein 1	AK057738|SPP1|6696|secreted phosphoprotein 1	AK075463|SPP1|6696|secreted phosphoprotein 1	AK290090|SPP1|6696|secreted phosphoprotein 1	AK296035|SPP1|6696|secreted phosphoprotein 1	BC007016|SPP1|6696|secreted phosphoprotein 1	BC017387|SPP1|6696|secreted phosphoprotein 1	BC022844|SPP1|6696|secreted phosphoprotein 1	AK295491|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr4_+_88896868_88896891	0.379035	MSX1,2.p2	AK290104|SPP1|6696|secreted phosphoprotein 1	M83248|SPP1|6696|secreted phosphoprotein 1	AK315461|SPP1|6696|secreted phosphoprotein 1	AF052124|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr4_+_88896801_88896819	0.353763	MSX1,2.p2	NM_000582|SPP1|6696|secreted phosphoprotein 1	NM_001040058|SPP1|6696|secreted phosphoprotein 1	NM_001040060|SPP1|6696|secreted phosphoprotein 1	NM_001251829|SPP1|6696|secreted phosphoprotein 1	NM_001251830|SPP1|6696|secreted phosphoprotein 1	JF412667|SPP1|6696|secreted phosphoprotein 1	BC093033|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr9_-_116840460_116840541	0.31975	MSX1,2.p2	X04494|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr4_+_88896899_88896928	0.308778	MSX1,2.p2	AY956318|SPP1|6696|secreted phosphoprotein 1	X13694|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr6_+_16129285_16129320	0.308323	MSX1,2.p2	AK074391|MYLIP|29116|myosin regulatory light chain interacting protein	AK314648|MYLIP|29116|myosin regulatory light chain interacting protein	NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein
hg19_v1_chr9_-_116840604_116840670	0.287387	MSX1,2.p2	AK310791|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr1_+_31883020_31883047	0.268306	MSX1,2.p2	NM_001199037|SERINC2|347735|serine incorporator 2	AK298512|SERINC2|347735|serine incorporator 2
hg19_v1_chr1_+_31882411_31882411	0.263855	MSX1,2.p2	AK127659|SERINC2|347735|serine incorporator 2	NM_001199038|SERINC2|347735|serine incorporator 2
hg19_v1_chr5_+_59784004_59784077	0.260551	MSX1,2.p2	AL050198|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)	AK094518|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v1_chr15_-_43594452_43594452	0.25508	MSX1,2.p2	AF363393|TGM7|116179|transglutaminase 7	NM_052955|TGM7|116179|transglutaminase 7
hg19_v1_chr14_-_94254765_94254765	0.249202	MSX1,2.p2	AY225516|PRIMA1|145270|proline rich membrane anchor 1	AY225517|PRIMA1|145270|proline rich membrane anchor 1	NM_178013|PRIMA1|145270|proline rich membrane anchor 1
hg19_v1_chr3_-_74570262_74570342	0.24469	MSX1,2.p2	BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)	NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)
hg19_v1_chrX_+_16668280_16668314	0.241437	MSX1,2.p2	L13220|S100G|795|S100 calcium binding protein G	NM_004057|S100G|795|S100 calcium binding protein G	X65869|S100G|795|S100 calcium binding protein G	BC112174|S100G|795|S100 calcium binding protein G
hg19_v1_chr8_-_27115897_27115927	0.230497	MSX1,2.p2	BC011520|STMN4|81551|stathmin-like 4	NM_030795|STMN4|81551|stathmin-like 4	BC111001|STMN4|81551|stathmin-like 4	AK295329|STMN4|81551|stathmin-like 4	AK225142|STMN4|81551|stathmin-like 4	AK294023|STMN4|81551|stathmin-like 4	AK309207|STMN4|81551|stathmin-like 4	AL136568|STMN4|81551|stathmin-like 4
hg19_v1_chr1_+_84767288_84767338	0.226526	MSX1,2.p2	NM_001134663|SAMD13|148418|sterile alpha motif domain containing 13
hg19_v1_chr4_+_86699846_86699850	0.216931	MSX1,2.p2	NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24
hg19_v1_chr9_+_136501484_136501533	0.214346	MSX1,2.p2	NM_000787|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	Y00096|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	BC017174|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	X13255|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	X13256|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	DQ893630|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	EU176683|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)
hg19_v1_chr7_-_27159213_27159213	0.212178	MSX1,2.p2	BC015180|HOXA3|3200|homeobox A3	NM_030661|HOXA3|3200|homeobox A3
hg19_v1_chr4_+_90033967_90033967	0.201554	MSX1,2.p2	AK027653|TIGD2|166815|tigger transposable element derived 2	NM_145715|TIGD2|166815|tigger transposable element derived 2
hg19_v1_chr2_+_113825546_113825558	0.196815	MSX1,2.p2	AY029413|IL1F10|84639|interleukin 1 family, member 10 (theta)	NM_173161|IL1F10|84639|interleukin 1 family, member 10 (theta)	BC103966|IL1F10|84639|interleukin 1 family, member 10 (theta)	BC103967|IL1F10|84639|interleukin 1 family, member 10 (theta)	BC103968|IL1F10|84639|interleukin 1 family, member 10 (theta)	AY358846|IL1F10|84639|interleukin 1 family, member 10 (theta)
hg19_v1_chr12_+_53818864_53818869	0.184339	MSX1,2.p2	CR627318|AMHR2|269|anti-Mullerian hormone receptor, type II
hg19_v1_chr3_-_148939784_148939831	0.182873	MSX1,2.p2	BC070304|CP|1356|ceruloplasmin (ferroxidase)	NM_000096|CP|1356|ceruloplasmin (ferroxidase)
hg19_v1_chrX_+_99839789_99840014	0.1815	MSX1,2.p2	NM_022144|TNMD|64102|tenomodulin	AF191770|TNMD|64102|tenomodulin	BC034030|TNMD|64102|tenomodulin	AF291656|TNMD|64102|tenomodulin	AF234259|TNMD|64102|tenomodulin	AY358706|TNMD|64102|tenomodulin	AB055421|TNMD|64102|tenomodulin
hg19_v1_chrX_-_11284094_11284123	0.180283	MSX1,2.p2	AF177663|ARHGAP6|395|Rho GTPase activating protein 6	NM_013423|ARHGAP6|395|Rho GTPase activating protein 6	AK297713|ARHGAP6|395|Rho GTPase activating protein 6
hg19_v1_chr8_-_8239188_8239256	0.180175	MSX1,2.p2	AK122582|SGK223|157285|homolog of rat pragma of Rnd2	NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2
hg19_v1_chr3_-_151102536_151102553	0.174419	MSX1,2.p2	AK292096|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	AK303714|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	AK316575|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	BC017898|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	NM_022788|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12
hg19_v1_chr1_+_78470593_78470635	0.173869	MSX1,2.p2	U40992|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4	AK313205|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4	AB209922|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4	BC034721|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4	NM_007034|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v1_chr10_+_7745354_7745400	0.173108	MSX1,2.p2	AK225277|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr9_-_116840545_116840550	0.171547	MSX1,2.p2	AY544123|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr11_-_27681195_27681195	0.169068	MSX1,2.p2	EF689009|BDNF|627|brain-derived neurotrophic factor	EF689010|BDNF|627|brain-derived neurotrophic factor	NM_001143816|BDNF|627|brain-derived neurotrophic factor	NM_170735|BDNF|627|brain-derived neurotrophic factor
hg19_v1_chrX_-_133792497_133792512	0.159892	MSX1,2.p2	BC022335|PLAC1|10761|placenta-specific 1	AF234654|PLAC1|10761|placenta-specific 1	BC066327|PLAC1|10761|placenta-specific 1	AK075086|PLAC1|10761|placenta-specific 1	NM_021796|PLAC1|10761|placenta-specific 1
hg19_v1_chr6_-_51952368_51952422	0.157358	MSX1,2.p2	AF480064|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	AY092083|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	AY074797|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	NM_138694|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	NM_170724|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)
hg19_v1_chr10_+_7745325_7745339	0.152219	MSX1,2.p2	AK225329|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2	AK297334|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2	X07173|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr8_-_27115935_27115980	0.146791	MSX1,2.p2	AK297415|STMN4|81551|stathmin-like 4
hg19_v1_chr6_+_16129321_16129553	0.145575	MSX1,2.p2	BC002860|MYLIP|29116|myosin regulatory light chain interacting protein	AF258586|MYLIP|29116|myosin regulatory light chain interacting protein	AF187016|MYLIP|29116|myosin regulatory light chain interacting protein	AF006003|MYLIP|29116|myosin regulatory light chain interacting protein	AF212221|MYLIP|29116|myosin regulatory light chain interacting protein	EU176184|MYLIP|29116|myosin regulatory light chain interacting protein	BT007055|MYLIP|29116|myosin regulatory light chain interacting protein
hg19_v1_chr3_+_8543539_8543624	0.142765	MSX1,2.p2	AK294455|LMCD1|29995|LIM and cysteine-rich domains 1	AK293849|LMCD1|29995|LIM and cysteine-rich domains 1	AF216709|LMCD1|29995|LIM and cysteine-rich domains 1	DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1	DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1
hg19_v1_chr2_-_180427314_180427314	0.139252	MSX1,2.p2	AK057999|ZNF385B|151126|zinc finger protein 385B	NM_001113398|ZNF385B|151126|zinc finger protein 385B
hg19_v1_chr7_-_135613197_135613244	0.138642	MSX1,2.p2	AF130088|LUZP6|767558|leucine zipper protein 6
hg19_v1_chr8_+_32504250_32504250	0.135243	MSX1,2.p2	AK289927|NRG1|3084|neuregulin 1	NM_013959|NRG1|3084|neuregulin 1
hg19_v1_chr4_+_71062241_71062243	0.134352	MSX1,2.p2	EF113908|ODAM|54959|odontogenic, ameloblast asssociated	NM_017855|ODAM|54959|odontogenic, ameloblast asssociated
hg19_v1_chr3_+_69812620_69812706	0.133942	MSX1,2.p2	AK296129|MITF|4286|microphthalmia-associated transcription factor	NM_001184967|MITF|4286|microphthalmia-associated transcription factor
hg19_v1_chr8_-_110620220_110620232	0.132788	MSX1,2.p2	AK297182|SYBU|55638|syntabulin (syntaxin-interacting)
hg19_v1_chr5_+_15500288_15500310	0.130991	MSX1,2.p2	AB020647|FBXL7|23194|F-box and leucine-rich repeat protein 7	NM_012304|FBXL7|23194|F-box and leucine-rich repeat protein 7
hg19_v1_chr19_+_49376488_49376490	0.12995	MSX1,2.p2	DQ891855|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A	EU176641|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A	CR457259|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A
hg19_v1_chr16_-_21289571_21289616	0.129555	MSX1,2.p2	DQ892377|CRYM|1428|crystallin, mu	DQ895591|CRYM|1428|crystallin, mu	AK310424|CRYM|1428|crystallin, mu	U85772|CRYM|1428|crystallin, mu	L02950|CRYM|1428|crystallin, mu	BC008398|CRYM|1428|crystallin, mu
hg19_v1_chr19_-_14169970_14169970	0.128696	MSX1,2.p2	NM_001145028|PALM3|342979|paralemmin 3
hg19_v1_chr4_+_77356252_77356252	0.128523	MSX1,2.p2	AB055660|SHROOM3|57619|shroom family member 3	NM_020859|SHROOM3|57619|shroom family member 3
hg19_v1_chr1_+_153232178_153232178	0.128045	MSX1,2.p2	BC108290|LOR|4014|loricrin	NM_000427|LOR|4014|loricrin
hg19_v1_chr13_-_70682458_70682624	0.125109	MSX1,2.p2	AF252283|KLHL1|57626|kelch-like 1 (Drosophila)	AB040923|KLHL1|57626|kelch-like 1 (Drosophila)	AK291435|KLHL1|57626|kelch-like 1 (Drosophila)	NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)
hg19_v1_chr1_-_241799101_241799231	0.124075	MSX1,2.p2	BC117360|CHML|1122|choroideremia-like (Rab escort protein 2)	NM_001821|CHML|1122|choroideremia-like (Rab escort protein 2)	X64728|CHML|1122|choroideremia-like (Rab escort protein 2)
hg19_v1_chr15_+_80364902_80364950	0.117982	MSX1,2.p2	NM_001242915|ZFAND6|54469|zinc finger, AN1-type domain 6	NM_001242916|ZFAND6|54469|zinc finger, AN1-type domain 6	AF261138|ZFAND6|54469|zinc finger, AN1-type domain 6	AJ251095|ZFAND6|54469|zinc finger, AN1-type domain 6
hg19_v1_chr12_-_91398744_91398750	0.115624	MSX1,2.p2	U59111|EPYC|1833|epiphycan
hg19_v1_chr1_-_108231122_108231127	0.115473	MSX1,2.p2	AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor	AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor	AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor	AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor	NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor
hg19_v1_chr5_+_139876504_139876626	0.110745	MSX1,2.p2	AF217646|ANKHD1|54882|ankyrin repeat and KH domain containing 1
hg19_v1_chr12_+_14538232_14538312	0.110134	MSX1,2.p2	AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein	BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein
hg19_v1_chr9_-_116840673_116840755	0.10848	MSX1,2.p2	AK310776|AMBP|259|alpha-1-microglobulin/bikunin precursor	BC041593|AMBP|259|alpha-1-microglobulin/bikunin precursor	NM_001633|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr1_+_120254418_120254645	0.108212	MSX1,2.p2	NM_006623|PHGDH|26227|phosphoglycerate dehydrogenase	AK315360|PHGDH|26227|phosphoglycerate dehydrogenase	BC011262|PHGDH|26227|phosphoglycerate dehydrogenase	AK309662|PHGDH|26227|phosphoglycerate dehydrogenase	AK310132|PHGDH|26227|phosphoglycerate dehydrogenase	AF171237|PHGDH|26227|phosphoglycerate dehydrogenase	BC000303|PHGDH|26227|phosphoglycerate dehydrogenase	BC001349|PHGDH|26227|phosphoglycerate dehydrogenase	BC023235|PHGDH|26227|phosphoglycerate dehydrogenase	DQ892073|PHGDH|26227|phosphoglycerate dehydrogenase	EU176546|PHGDH|26227|phosphoglycerate dehydrogenase	CR456795|PHGDH|26227|phosphoglycerate dehydrogenase
hg19_v1_chr9_-_97356007_97356074	0.107828	MSX1,2.p2	CR536483|FBP2|8789|fructose-1,6-bisphosphatase 2	HQ258389|FBP2|8789|fructose-1,6-bisphosphatase 2	BC113632|FBP2|8789|fructose-1,6-bisphosphatase 2	BC117477|FBP2|8789|fructose-1,6-bisphosphatase 2	NM_003837|FBP2|8789|fructose-1,6-bisphosphatase 2	Y10812|FBP2|8789|fructose-1,6-bisphosphatase 2
hg19_v1_chr10_+_7745284_7745320	0.105816	MSX1,2.p2	AK291379|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr10_-_62332666_62332715	0.102917	MSX1,2.p2	AB209308|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	AK126851|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	NM_001204404|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v1_chr4_-_189026401_189026407	0.102255	MSX1,2.p2	BC111959|TRIML2|205860|tripartite motif family-like 2	BC111961|TRIML2|205860|tripartite motif family-like 2	BC143709|TRIML2|205860|tripartite motif family-like 2	AK098667|TRIML2|205860|tripartite motif family-like 2	NM_173553|TRIML2|205860|tripartite motif family-like 2
hg19_v1_chr5_-_179044835_179044916	0.101444	MSX1,2.p2	AK298193|HNRNPH1|3187|heterogeneous nuclear ribonucleoprotein H1 (H)
hg19_v1_chr2_+_219745243_219745284	0.101385	MSX1,2.p2	BC052234|WNT10A|80326|wingless-type MMTV integration site family, member 10A	AK024363|WNT10A|80326|wingless-type MMTV integration site family, member 10A	NM_025216|WNT10A|80326|wingless-type MMTV integration site family, member 10A	BC040026|WNT10A|80326|wingless-type MMTV integration site family, member 10A
hg19_v1_chr11_-_58343308_58343389	0.100777	MSX1,2.p2	BC007490|LPXN|9404|leupaxin	BC019035|LPXN|9404|leupaxin	AK313306|LPXN|9404|leupaxin	AK223165|LPXN|9404|leupaxin	AK301093|LPXN|9404|leupaxin	AF062075|LPXN|9404|leupaxin	NM_004811|LPXN|9404|leupaxin
hg19_v1_chr7_-_14025826_14026138	0.10035	MSX1,2.p2	AK293802|ETV1|2115|ets variant 1	AK311134|ETV1|2115|ets variant 1	AK311194|ETV1|2115|ets variant 1	CR627389|ETV1|2115|ets variant 1	AK294572|ETV1|2115|ets variant 1	AK311707|ETV1|2115|ets variant 1	AK316007|ETV1|2115|ets variant 1	AK299693|ETV1|2115|ets variant 1	NM_001163150|ETV1|2115|ets variant 1	NM_001163151|ETV1|2115|ets variant 1	NM_001163152|ETV1|2115|ets variant 1
hg19_v1_chrX_-_19688991_19689121	0.0989313	MSX1,2.p2	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1	NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1
hg19_v1_chr7_+_39017608_39017608	0.0980547	MSX1,2.p2	NM_001166018|POU6F2|11281|POU class 6 homeobox 2	NM_007252|POU6F2|11281|POU class 6 homeobox 2
hg19_v1_chr5_-_59783885_59783924	0.0966286	MSX1,2.p2	AY245866|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	AK307363|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	NM_001165899|PDE4D|5144|phosphodiesterase 4D, cAMP-specific
hg19_v1_chr3_+_155838336_155838366	0.0963464	MSX1,2.p2	NM_172160|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1	L47665|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1	AK292693|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1	AK303287|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v1_chr18_+_21572736_21572853	0.0953439	MSX1,2.p2	AK091080|TTC39C|125488|tetratricopeptide repeat domain 39C	NM_153211|TTC39C|125488|tetratricopeptide repeat domain 39C	BC121034|TTC39C|125488|tetratricopeptide repeat domain 39C	BC121035|TTC39C|125488|tetratricopeptide repeat domain 39C
hg19_v1_chr17_-_4890920_4890984	0.0917868	MSX1,2.p2	AB020716|CAMTA2|23125|calmodulin binding transcription activator 2	BC167148|CAMTA2|23125|calmodulin binding transcription activator 2	BC167149|CAMTA2|23125|calmodulin binding transcription activator 2	BC167151|CAMTA2|23125|calmodulin binding transcription activator 2	BC167160|CAMTA2|23125|calmodulin binding transcription activator 2	EU832136|CAMTA2|23125|calmodulin binding transcription activator 2	EU832229|CAMTA2|23125|calmodulin binding transcription activator 2	AK302528|CAMTA2|23125|calmodulin binding transcription activator 2	AL833974|CAMTA2|23125|calmodulin binding transcription activator 2	BC142695|CAMTA2|23125|calmodulin binding transcription activator 2	NM_001171166|CAMTA2|23125|calmodulin binding transcription activator 2	NM_015099|CAMTA2|23125|calmodulin binding transcription activator 2
hg19_v1_chr11_-_85397215_85397319	0.0914918	MSX1,2.p2	BC044814|CCDC89|220388|coiled-coil domain containing 89	AK095478|CCDC89|220388|coiled-coil domain containing 89	NM_152723|CCDC89|220388|coiled-coil domain containing 89
hg19_v1_chr20_-_49253425_49253425	0.0907682	MSX1,2.p2	AK056792|FAM65C|140876|family with sequence similarity 65, member C	NM_080829|FAM65C|140876|family with sequence similarity 65, member C
hg19_v1_chr4_-_41884568_41884591	0.0906582	MSX1,2.p2	
hg19_v1_chr3_+_69812961_69812961	0.0903151	MSX1,2.p2	AB006988|MITF|4286|microphthalmia-associated transcription factor	NM_006722|MITF|4286|microphthalmia-associated transcription factor
hg19_v1_chr7_-_115670828_115670876	0.0900536	MSX1,2.p2	CR933605|TFEC|22797|transcription factor EC	NM_001018058|TFEC|22797|transcription factor EC	NM_012252|TFEC|22797|transcription factor EC
hg19_v1_chr19_+_6772705_6772743	0.0899718	MSX1,2.p2	NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor	AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor	AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor
hg19_v1_chr5_+_68667280_68667280	0.0899226	MSX1,2.p2	AF085736|RAD17|5884|RAD17 homolog (S. pombe)	NM_133339|RAD17|5884|RAD17 homolog (S. pombe)
hg19_v1_chr4_-_76957139_76957349	0.0897451	MSX1,2.p2	BT006787|CXCL11|6373|chemokine (C-X-C motif) ligand 11	DQ895703|CXCL11|6373|chemokine (C-X-C motif) ligand 11	EU176355|CXCL11|6373|chemokine (C-X-C motif) ligand 11	Y15220|CXCL11|6373|chemokine (C-X-C motif) ligand 11	U59286|CXCL11|6373|chemokine (C-X-C motif) ligand 11	U66096|CXCL11|6373|chemokine (C-X-C motif) ligand 11	BC005292|CXCL11|6373|chemokine (C-X-C motif) ligand 11	AF002985|CXCL11|6373|chemokine (C-X-C motif) ligand 11	AF030514|CXCL11|6373|chemokine (C-X-C motif) ligand 11	BC110986|CXCL11|6373|chemokine (C-X-C motif) ligand 11	AF352781|CXCL11|6373|chemokine (C-X-C motif) ligand 11	BC012532|CXCL11|6373|chemokine (C-X-C motif) ligand 11	NM_005409|CXCL11|6373|chemokine (C-X-C motif) ligand 11
hg19_v1_chr9_+_120466625_120466750	0.0889337	MSX1,2.p2	U93091|TLR4|7099|toll-like receptor 4	BC025294|TLR4|7099|toll-like receptor 4	AK226155|TLR4|7099|toll-like receptor 4	U88880|TLR4|7099|toll-like receptor 4	BC117422|TLR4|7099|toll-like receptor 4	BC143841|TLR4|7099|toll-like receptor 4	AB445638|TLR4|7099|toll-like receptor 4
hg19_v1_chr1_-_190446701_190446770	0.0887527	MSX1,2.p2	AK123024|FAM5C|339479|family with sequence similarity 5, member C	AB111893|FAM5C|339479|family with sequence similarity 5, member C	NM_199051|FAM5C|339479|family with sequence similarity 5, member C
hg19_v1_chr12_-_71551564_71551619	0.0873567	MSX1,2.p2	AK223022|TSPAN8|7103|tetraspanin 8	AK313112|TSPAN8|7103|tetraspanin 8
hg19_v1_chr12_-_53171104_53171128	0.0869656	MSX1,2.p2	M99063|KRT76|51350|keratin 76	AK299390|KRT76|51350|keratin 76	NM_015848|KRT76|51350|keratin 76
hg19_v1_chr1_+_22979681_22979765	0.0869305	MSX1,2.p2	NM_000491|C1QB|713|complement component 1, q subcomponent, B chain	BC008983|C1QB|713|complement component 1, q subcomponent, B chain
hg19_v1_chr3_-_79817058_79817058	0.0868571	MSX1,2.p2	NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v1_chr8_-_102803196_102803204	0.086452	MSX1,2.p2	AK055073|NCALD|83988|neurocalcin delta	AK314523|NCALD|83988|neurocalcin delta
hg19_v1_chr17_+_18086813_18086866	0.0856896	MSX1,2.p2	NM_017758|ALKBH5|54890|alkB, alkylation repair homolog 5 (E. coli)
hg19_v1_chr16_+_31469456_31469658	0.0854226	MSX1,2.p2	AK295790|ARMC5|79798|armadillo repeat containing 5
hg19_v1_chr10_+_7745341_7745348	0.0852261	MSX1,2.p2	BC132685|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr3_-_137851123_137851228	0.0840743	MSX1,2.p2	BC119639|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	BC119640|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	AF141315|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	AK225668|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	NM_016161|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v1_chr11_-_115088628_115088669	0.0840276	MSX1,2.p2	AY309502|CADM1|23705|cell adhesion molecule 1
hg19_v1_chr6_+_87969619_87969709	0.0833291	MSX1,2.p2	BC063594|ZNF292|23036|zinc finger protein 292	AY684300|ZNF292|23036|zinc finger protein 292
hg19_v1_chr12_-_52585686_52585802	0.0827119	MSX1,2.p2	AJ717743|KRT80|144501|keratin 80	BC033114|KRT80|144501|keratin 80	BC065180|KRT80|144501|keratin 80	NM_001081492|KRT80|144501|keratin 80	NM_182507|KRT80|144501|keratin 80
hg19_v1_chr11_+_117070039_117070119	0.0810266	MSX1,2.p2	NM_001001522|TAGLN|6876|transgelin	NM_003186|TAGLN|6876|transgelin	AK223002|TAGLN|6876|transgelin	M95787|TAGLN|6876|transgelin	AK314043|TAGLN|6876|transgelin	BC010946|TAGLN|6876|transgelin	BC093050|TAGLN|6876|transgelin	BC004927|TAGLN|6876|transgelin	D17409|TAGLN|6876|transgelin
hg19_v1_chr17_-_9929567_9929675	0.080304	MSX1,2.p2	AB007854|GAS7|8522|growth arrest-specific 7	AK225165|GAS7|8522|growth arrest-specific 7	AK299574|GAS7|8522|growth arrest-specific 7	NM_001130831|GAS7|8522|growth arrest-specific 7
hg19_v1_chr12_-_6484557_6484714	0.0800206	MSX1,2.p2	AY365119|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha	X76180|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha
hg19_v1_chr1_-_169599349_169599376	0.0786245	MSX1,2.p2	M25322|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)	AK312884|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)	BC068533|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)	NM_003005|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)
hg19_v1_chr16_-_73092533_73092640	0.078361	MSX1,2.p2	D10250|ZFHX3|463|zinc finger homeobox 3	NM_001164766|ZFHX3|463|zinc finger homeobox 3
hg19_v1_chr22_-_25777543_25777543	0.0779667	MSX1,2.p2	BC139736|LRP5L|91355|low density lipoprotein receptor-related protein 5-like	NM_001135772|LRP5L|91355|low density lipoprotein receptor-related protein 5-like
hg19_v1_chr14_+_21756135_21756135	0.0779596	MSX1,2.p2	AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1	NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1
hg19_v1_chr5_+_140529619_140529838	0.0779446	MSX1,2.p2	AK299661|PCDHB6|56130|protocadherin beta 6	AK313482|PCDHB6|56130|protocadherin beta 6	AF152499|PCDHB6|56130|protocadherin beta 6	AF217752|PCDHB6|56130|protocadherin beta 6	NM_018939|PCDHB6|56130|protocadherin beta 6
hg19_v1_chr3_+_100238063_100238088	0.0778216	MSX1,2.p2	BC040355|TMEM45A|55076|transmembrane protein 45A
hg19_v1_chr14_-_65409445_65409586	0.0776083	MSX1,2.p2	BC022820|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	AK225871|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC005277|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC067221|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC016756|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	X68314|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	X53463|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC039850|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC046164|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	NM_002083|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)
hg19_v1_chr10_-_62149487_62149633	0.0770896	MSX1,2.p2	U13616|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	NM_020987|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v1_chrX_+_66788682_66788682	0.0764129	MSX1,2.p2	NM_001011645|AR|367|androgen receptor
hg19_v1_chr6_+_147527102_147527118	0.0748888	MSX1,2.p2	AK128121|STXBP5|134957|syntaxin binding protein 5 (tomosyn)
hg19_v1_chr7_+_114066554_114066706	0.0743632	MSX1,2.p2	AF467253|FOXP2|93986|forkhead box P2	NM_001172767|FOXP2|93986|forkhead box P2	NM_148899|FOXP2|93986|forkhead box P2	AF467258|FOXP2|93986|forkhead box P2	AF467259|FOXP2|93986|forkhead box P2
hg19_v1_chr17_+_4854383_4854426	0.072976	MSX1,2.p2	NM_001193503|ENO3|2027|enolase 3 (beta, muscle)	NM_001976|ENO3|2027|enolase 3 (beta, muscle)	NM_053013|ENO3|2027|enolase 3 (beta, muscle)	AK300662|ENO3|2027|enolase 3 (beta, muscle)	AK300673|ENO3|2027|enolase 3 (beta, muscle)	AK300709|ENO3|2027|enolase 3 (beta, muscle)	AK309864|ENO3|2027|enolase 3 (beta, muscle)	BC017249|ENO3|2027|enolase 3 (beta, muscle)
hg19_v1_chr19_+_36203829_36203829	0.0720923	MSX1,2.p2	AF130255|ZBTB32|27033|zinc finger and BTB domain containing 32	NM_014383|ZBTB32|27033|zinc finger and BTB domain containing 32
hg19_v1_chr12_-_15114495_15114602	0.0720026	MSX1,2.p2	BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta
hg19_v1_chr4_+_113970784_113970884	0.0702054	MSX1,2.p2	NM_001148|ANK2|287|ankyrin 2, neuronal	NM_020977|ANK2|287|ankyrin 2, neuronal	AK299767|ANK2|287|ankyrin 2, neuronal	AK307601|ANK2|287|ankyrin 2, neuronal	X56958|ANK2|287|ankyrin 2, neuronal	Z26634|ANK2|287|ankyrin 2, neuronal
hg19_v1_chr17_+_65936590_65936678	0.0701959	MSX1,2.p2	AK027184|BPTF|2186|bromodomain PHD finger transcription factor
hg19_v1_chr12_+_54891539_54891545	0.0696715	MSX1,2.p2	BC093769|NCKAP1L|3071|NCK-associated protein 1-like	BC093771|NCKAP1L|3071|NCK-associated protein 1-like	BC143355|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chrX_+_119737743_119737834	0.0686777	MSX1,2.p2	NM_014060|MCTS1|28985|malignant T cell amplified sequence 1	AK311993|MCTS1|28985|malignant T cell amplified sequence 1	AB034206|MCTS1|28985|malignant T cell amplified sequence 1
hg19_v1_chr2_+_61389628_61389628	0.066624	MSX1,2.p2	NM_001143959|C2orf74|339804|chromosome 2 open reading frame 74
hg19_v1_chr3_+_130569368_130569444	0.0662598	MSX1,2.p2	NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1
hg19_v1_chr16_+_82068958_82069029	0.0659912	MSX1,2.p2	DQ893100|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	DQ896372|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2
hg19_v1_chr13_+_52598678_52598826	0.0652543	MSX1,2.p2	BC073862|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)	D87455|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)	NM_021645|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v1_chr17_-_47841468_47841491	0.0651407	MSX1,2.p2	AF123073|FAM117A|81558|family with sequence similarity 117, member A	BC065199|FAM117A|81558|family with sequence similarity 117, member A
hg19_v1_chr20_+_43850009_43850030	0.0634212	MSX1,2.p2	BC005262|SEMG2|6407|semenogelin II	M81652|SEMG2|6407|semenogelin II	NM_003008|SEMG2|6407|semenogelin II	AK312932|SEMG2|6407|semenogelin II	BC056675|SEMG2|6407|semenogelin II	BC070306|SEMG2|6407|semenogelin II
hg19_v1_chr17_-_4890664_4890736	0.0625889	MSX1,2.p2	AL831849|CAMTA2|23125|calmodulin binding transcription activator 2	NM_001171167|CAMTA2|23125|calmodulin binding transcription activator 2	NM_001171168|CAMTA2|23125|calmodulin binding transcription activator 2
hg19_v1_chr7_-_115670774_115670798	0.0619776	MSX1,2.p2	D43945|TFEC|22797|transcription factor EC	BC029891|TFEC|22797|transcription factor EC
hg19_v1_chr12_-_6484389_6484415	0.0614728	MSX1,2.p2	AK172792|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha	NM_001159576|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha
hg19_v1_chr3_+_56591182_56591222	0.0613647	MSX1,2.p2	NM_001012506|CCDC66|285331|coiled-coil domain containing 66	NM_001141947|CCDC66|285331|coiled-coil domain containing 66	BC047509|CCDC66|285331|coiled-coil domain containing 66	BC132827|CCDC66|285331|coiled-coil domain containing 66
hg19_v1_chr16_+_82068910_82068954	0.060133	MSX1,2.p2	BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2
hg19_v1_chr16_-_46655262_46655283	0.0596076	MSX1,2.p2	EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1	EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1	EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1	AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1	AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1	AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1	AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1	BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1
hg19_v1_chr11_-_83393436_83393467	0.0585095	MSX1,2.p2	AK299778|DLG2|1740|discs, large homolog 2 (Drosophila)	CR933674|DLG2|1740|discs, large homolog 2 (Drosophila)	NM_001142702|DLG2|1740|discs, large homolog 2 (Drosophila)
hg19_v1_chr12_+_54891522_54891536	0.0581545	MSX1,2.p2	M58285|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr8_-_102803178_102803188	0.0577875	MSX1,2.p2	AB209015|NCALD|83988|neurocalcin delta	AL136612|NCALD|83988|neurocalcin delta
hg19_v1_chr1_+_104198140_104198141	0.0574715	MSX1,2.p2	NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)	AK292341|AMY1A|276|amylase, alpha 1A (salivary)
hg19_v1_chr3_+_127641901_127641903	0.0562835	MSX1,2.p2	NM_207335|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	AM393308|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	AM393457|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12
hg19_v1_chr22_+_40573879_40574120	0.0562356	MSX1,2.p2	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B	NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B	AK296590|TNRC6B|23112|trinucleotide repeat containing 6B	AK294519|TNRC6B|23112|trinucleotide repeat containing 6B	AB029016|TNRC6B|23112|trinucleotide repeat containing 6B
hg19_v1_chr2_-_105467912_105467920	0.0552657	MSX1,2.p2	AK096498|LOC100506421|100506421|uncharacterized LOC100506421
hg19_v1_chr7_+_27282163_27282163	0.0550533	MSX1,2.p2	AK299188|EVX1|2128|even-skipped homeobox 1	NM_001989|EVX1|2128|even-skipped homeobox 1
hg19_v1_chr6_+_71136141_71136173	0.0540746	MSX1,2.p2	NM_001162529|FAM135A|57579|family with sequence similarity 135, member A	AB037832|FAM135A|57579|family with sequence similarity 135, member A
hg19_v1_chr1_-_104239071_104239072	0.0539898	MSX1,2.p2	AK292341|AMY1A|276|amylase, alpha 1A (salivary)	NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)
hg19_v1_chr6_+_31973358_31973465	0.053414	MSX1,2.p2	NM_000500|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	NM_001128590|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	BC125181|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	BC125182|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AK054616|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM086564|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM086565|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183945|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183946|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183947|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183948|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183949|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183950|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2	AM183951|CYP21A2|1589|cytochrome P450, family 21, subfamily A, polypeptide 2
hg19_v1_chr10_+_114133838_114133969	0.0516284	MSX1,2.p2	NM_203379|ACSL5|51703|acyl-CoA synthetase long-chain family member 5
hg19_v1_chr2_+_28718937_28718985	0.0502518	MSX1,2.p2	BC150633|PLB1|151056|phospholipase B1	NM_001170585|PLB1|151056|phospholipase B1	NM_153021|PLB1|151056|phospholipase B1	BC153864|PLB1|151056|phospholipase B1
hg19_v1_chr13_-_99910548_99910681	0.0495865	MSX1,2.p2	AF261135|GPR18|2841|G protein-coupled receptor 18	BC050646|GPR18|2841|G protein-coupled receptor 18	AF339781|GPR18|2841|G protein-coupled receptor 18	BC008569|GPR18|2841|G protein-coupled receptor 18	NM_001098200|GPR18|2841|G protein-coupled receptor 18	NM_005292|GPR18|2841|G protein-coupled receptor 18
hg19_v1_chr8_-_102803438_102803438	0.0493821	MSX1,2.p2	NM_032041|NCALD|83988|neurocalcin delta
hg19_v1_chrX_+_129139163_129139250	0.0488804	MSX1,2.p2	NM_021946|BCORL1|63035|BCL6 corepressor-like 1	AK074089|BCORL1|63035|BCL6 corepressor-like 1
hg19_v1_chr12_+_54891491_54891519	0.0479192	MSX1,2.p2	NM_005337|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr1_-_154832187_154832337	0.0475391	MSX1,2.p2	HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
hg19_v1_chr9_+_1050367_1050374	0.0466711	MSX1,2.p2	Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2
hg19_v1_chr11_-_72463416_72463516	0.0461809	MSX1,2.p2	AY553630|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	NM_001040118|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
hg19_v1_chr1_+_54359859_54359883	0.0461274	MSX1,2.p2	AK290780|DIO1|1733|deiodinase, iodothyronine, type I	BC017955|DIO1|1733|deiodinase, iodothyronine, type I	BC107170|DIO1|1733|deiodinase, iodothyronine, type I	BC107171|DIO1|1733|deiodinase, iodothyronine, type I	NM_000792|DIO1|1733|deiodinase, iodothyronine, type I	NM_001039715|DIO1|1733|deiodinase, iodothyronine, type I	NM_001039716|DIO1|1733|deiodinase, iodothyronine, type I	NM_213593|DIO1|1733|deiodinase, iodothyronine, type I	FJ002243|DIO1|1733|deiodinase, iodothyronine, type I	FJ002244|DIO1|1733|deiodinase, iodothyronine, type I	AY560374|DIO1|1733|deiodinase, iodothyronine, type I	AY560375|DIO1|1733|deiodinase, iodothyronine, type I	AY560376|DIO1|1733|deiodinase, iodothyronine, type I	AY560377|DIO1|1733|deiodinase, iodothyronine, type I	AY560378|DIO1|1733|deiodinase, iodothyronine, type I	AY560379|DIO1|1733|deiodinase, iodothyronine, type I	AY560380|DIO1|1733|deiodinase, iodothyronine, type I	AY560381|DIO1|1733|deiodinase, iodothyronine, type I	AY560382|DIO1|1733|deiodinase, iodothyronine, type I	AY560383|DIO1|1733|deiodinase, iodothyronine, type I
hg19_v1_chrX_-_62975005_62975030	0.0458708	MSX1,2.p2	NM_001173480|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9	NM_015185|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v1_chr12_+_101188373_101188735	0.0455967	MSX1,2.p2	NM_178826|ANO4|121601|anoctamin 4	AK091591|ANO4|121601|anoctamin 4	AK316105|ANO4|121601|anoctamin 4	AK293810|ANO4|121601|anoctamin 4
hg19_v1_chr2_-_65090710_65090772	0.045197	MSX1,2.p2	
hg19_v1_chr12_+_107078476_107078591	0.044943	MSX1,2.p2	BC028582|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	NM_032491|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	AF332192|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	AK315698|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	BC030644|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	DQ890831|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	DQ893986|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)
hg19_v1_chr10_+_114133775_114133781	0.0444034	MSX1,2.p2	AK000339|ACSL5|51703|acyl-CoA synthetase long-chain family member 5
hg19_v1_chr2_-_240322692_240322704	0.0438131	MSX1,2.p2	BC039904|HDAC4|9759|histone deacetylase 4
hg19_v1_chr12_-_16759733_16759733	0.043762	MSX1,2.p2	BC050085|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	NM_001243610|LMO3|55885|LIM domain only 3 (rhombotin-like 2)
hg19_v1_chr8_-_15095791_15095791	0.0435583	MSX1,2.p2	NM_139167|SGCZ|137868|sarcoglycan, zeta
hg19_v1_chr1_+_153330329_153330348	0.0433493	MSX1,2.p2	AK311882|S100A9|6280|S100 calcium binding protein A9	NM_002965|S100A9|6280|S100 calcium binding protein A9	X06233|S100A9|6280|S100 calcium binding protein A9	BC047681|S100A9|6280|S100 calcium binding protein A9	AF086362|S100A9|6280|S100 calcium binding protein A9
hg19_v1_chr19_-_17958773_17958805	0.0428853	MSX1,2.p2	BC028068|JAK3|3718|Janus kinase 3
hg19_v1_chr12_-_105627182_105627182	0.0428141	MSX1,2.p2	NM_001251905|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
hg19_v1_chr6_-_13408368_13408368	0.0424634	MSX1,2.p2	AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1
hg19_v1_chr19_+_48325098_48325212	0.0422488	MSX1,2.p2	NM_000554|CRX|1406|cone-rod homeobox	DQ426868|CRX|1406|cone-rod homeobox	BC016664|CRX|1406|cone-rod homeobox	DQ426867|CRX|1406|cone-rod homeobox	BC053672|CRX|1406|cone-rod homeobox
hg19_v1_chr10_+_94833646_94833666	0.0422485	MSX1,2.p2	AK075374|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1	NM_000783|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1	AF005418|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1
hg19_v1_chr1_+_100316530_100316598	0.0414169	MSX1,2.p2	NM_000646|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	U84011|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	AB208867|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase
hg19_v1_chr4_+_86699858_86699939	0.0410277	MSX1,2.p2	BC098580|ARHGAP24|83478|Rho GTPase activating protein 24	AK098193|ARHGAP24|83478|Rho GTPase activating protein 24
hg19_v1_chr20_+_18122867_18122963	0.0405942	MSX1,2.p2	NM_020536|CSRP2BP|57325|CSRP2 binding protein	BC007537|CSRP2BP|57325|CSRP2 binding protein
hg19_v1_chr9_+_130830447_130830519	0.040369	MSX1,2.p2	AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v1_chr1_-_201915715_201915717	0.0390042	MSX1,2.p2	NM_012134|LMOD1|25802|leiomodin 1 (smooth muscle)
hg19_v1_chr17_-_15168590_15168647	0.0386003	MSX1,2.p2	BC091499|PMP22|5376|peripheral myelin protein 22	D11428|PMP22|5376|peripheral myelin protein 22	NM_000304|PMP22|5376|peripheral myelin protein 22
hg19_v1_chr10_-_74714479_74714543	0.0384167	MSX1,2.p2	AF349540|PLA2G12B|84647|phospholipase A2, group XIIB	BC093996|PLA2G12B|84647|phospholipase A2, group XIIB	BC111946|PLA2G12B|84647|phospholipase A2, group XIIB	BC143532|PLA2G12B|84647|phospholipase A2, group XIIB	AY358032|PLA2G12B|84647|phospholipase A2, group XIIB	NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB	AF339053|PLA2G12B|84647|phospholipase A2, group XIIB	AK313712|PLA2G12B|84647|phospholipase A2, group XIIB
hg19_v1_chr6_-_139309017_139309137	0.0383461	MSX1,2.p2	BC021211|REPS1|85021|RALBP1 associated Eps domain containing 1	AB209143|REPS1|85021|RALBP1 associated Eps domain containing 1
hg19_v1_chr3_+_9944511_9944578	0.037145	MSX1,2.p2	AF458069|IL17RE|132014|interleukin 17 receptor E	AY358451|IL17RE|132014|interleukin 17 receptor E	NM_001193380|IL17RE|132014|interleukin 17 receptor E	NM_153480|IL17RE|132014|interleukin 17 receptor E	BC063110|IL17RE|132014|interleukin 17 receptor E	AK074238|IL17RE|132014|interleukin 17 receptor E	AK096801|IL17RE|132014|interleukin 17 receptor E	AK298025|IL17RE|132014|interleukin 17 receptor E	AK096793|IL17RE|132014|interleukin 17 receptor E	AK314476|IL17RE|132014|interleukin 17 receptor E	AK297697|IL17RE|132014|interleukin 17 receptor E
hg19_v1_chr17_-_78450247_78450408	0.0368553	MSX1,2.p2	EU831771|NPTX1|4884|neuronal pentraxin I	EU831849|NPTX1|4884|neuronal pentraxin I	BC089441|NPTX1|4884|neuronal pentraxin I	U61849|NPTX1|4884|neuronal pentraxin I	AK127335|NPTX1|4884|neuronal pentraxin I	NM_002522|NPTX1|4884|neuronal pentraxin I
hg19_v1_chr6_+_154331630_154331635	0.0365106	MSX1,2.p2	DQ680044|OPRM1|4988|opioid receptor, mu 1	NM_001145279|OPRM1|4988|opioid receptor, mu 1	NM_001145280|OPRM1|4988|opioid receptor, mu 1	EU340241|OPRM1|4988|opioid receptor, mu 1	EU340242|OPRM1|4988|opioid receptor, mu 1	EU340243|OPRM1|4988|opioid receptor, mu 1	NM_001145281|OPRM1|4988|opioid receptor, mu 1
hg19_v1_chr17_+_37856224_37856230	0.0361794	MSX1,2.p2	AK300321|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
hg19_v1_chr7_-_99717463_99717480	0.0353767	MSX1,2.p2	AK300005|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa	NM_001190415|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v1_chr6_+_132859426_132859428	0.0348267	MSX1,2.p2	BC069083|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)	NM_175057|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)	AY183469|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)
hg19_v1_chr1_+_15764934_15764960	0.0347394	MSX1,2.p2	BC015118|CTRC|11330|chymotrypsin C (caldecrin)	CR749296|CTRC|11330|chymotrypsin C (caldecrin)	NM_007272|CTRC|11330|chymotrypsin C (caldecrin)	AK289447|CTRC|11330|chymotrypsin C (caldecrin)	BC059779|CTRC|11330|chymotrypsin C (caldecrin)	S82198|CTRC|11330|chymotrypsin C (caldecrin)
hg19_v1_chr12_+_109554391_109554404	0.0345311	MSX1,2.p2	AY382667|ACACB|32|acetyl-CoA carboxylase beta
hg19_v1_chr12_-_11214892_11214892	0.0342157	MSX1,2.p2	BC115401|TAS2R46|259292|taste receptor, type 2, member 46	NM_176887|TAS2R46|259292|taste receptor, type 2, member 46
hg19_v1_chr20_+_43835637_43835694	0.0340887	MSX1,2.p2	NM_003007|SEMG1|6406|semenogelin I	BC005229|SEMG1|6406|semenogelin I	BC007096|SEMG1|6406|semenogelin I	BC011442|SEMG1|6406|semenogelin I	BC055416|SEMG1|6406|semenogelin I	J04440|SEMG1|6406|semenogelin I	BT007177|SEMG1|6406|semenogelin I
hg19_v1_chr6_-_32920812_32920898	0.0339734	MSX1,2.p2	CR450324|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	DQ892839|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	DQ896086|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	BC026279|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	AK291858|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	X62744|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	BC011447|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	NM_006120|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha
hg19_v1_chr6_-_119470336_119470357	0.0338201	MSX1,2.p2	BX538186|FAM184A|79632|family with sequence similarity 184, member A	AK091682|FAM184A|79632|family with sequence similarity 184, member A	NM_001100411|FAM184A|79632|family with sequence similarity 184, member A
hg19_v1_chr10_+_7745229_7745282	0.0336394	MSX1,2.p2	NM_002216|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr4_-_89744154_89744408	0.0332756	MSX1,2.p2	AB020721|FAM13A|10144|family with sequence similarity 13, member A	AK027138|FAM13A|10144|family with sequence similarity 13, member A	BC033006|FAM13A|10144|family with sequence similarity 13, member A	BC086875|FAM13A|10144|family with sequence similarity 13, member A	BC058029|FAM13A|10144|family with sequence similarity 13, member A	AK296932|FAM13A|10144|family with sequence similarity 13, member A	NM_001015045|FAM13A|10144|family with sequence similarity 13, member A	AK091787|FAM13A|10144|family with sequence similarity 13, member A
hg19_v1_chr16_+_89984286_89984286	0.0329457	MSX1,2.p2	AK024232|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)	NM_002386|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
hg19_v1_chr21_-_37852387_37852387	0.0327013	MSX1,2.p2	AF314090|CLDN14|23562|claudin 14	AY355348|CLDN14|23562|claudin 14	NM_001146079|CLDN14|23562|claudin 14	NM_144492|CLDN14|23562|claudin 14
hg19_v1_chr20_+_23345020_23345020	0.0326763	MSX1,2.p2	AB100265|GZF1|64412|GDNF-inducible zinc finger protein 1	BC125188|GZF1|64412|GDNF-inducible zinc finger protein 1	BC154409|GZF1|64412|GDNF-inducible zinc finger protein 1	NM_022482|GZF1|64412|GDNF-inducible zinc finger protein 1
hg19_v1_chr1_+_84864214_84864259	0.0325939	MSX1,2.p2	AF274571|DNASE2B|58511|deoxyribonuclease II beta	NM_021233|DNASE2B|58511|deoxyribonuclease II beta	BC126136|DNASE2B|58511|deoxyribonuclease II beta	BC126138|DNASE2B|58511|deoxyribonuclease II beta	HQ258219|DNASE2B|58511|deoxyribonuclease II beta
hg19_v1_chr3_+_9944295_9944352	0.0323928	MSX1,2.p2	NM_153483|IL17RE|132014|interleukin 17 receptor E	BC035478|IL17RE|132014|interleukin 17 receptor E	BC137077|IL17RE|132014|interleukin 17 receptor E	BC137078|IL17RE|132014|interleukin 17 receptor E
hg19_v1_chr19_-_17375522_17375572	0.032171	MSX1,2.p2	AB026290|USHBP1|83878|Usher syndrome 1C binding protein 1	AB040046|USHBP1|83878|Usher syndrome 1C binding protein 1	AK300617|USHBP1|83878|Usher syndrome 1C binding protein 1	AK096028|USHBP1|83878|Usher syndrome 1C binding protein 1	BC027910|USHBP1|83878|Usher syndrome 1C binding protein 1	NM_031941|USHBP1|83878|Usher syndrome 1C binding protein 1	AK315239|USHBP1|83878|Usher syndrome 1C binding protein 1	AK292031|USHBP1|83878|Usher syndrome 1C binding protein 1
hg19_v1_chrX_-_19988381_19988381	0.0320918	MSX1,2.p2	NM_198279|CXorf23|256643|chromosome X open reading frame 23
hg19_v1_chr9_+_18474078_18474098	0.0319763	MSX1,2.p2	NM_001040272|ADAMTSL1|92949|ADAMTS-like 1	NM_052866|ADAMTSL1|92949|ADAMTS-like 1	AK290667|ADAMTSL1|92949|ADAMTS-like 1	AY358327|ADAMTSL1|92949|ADAMTS-like 1
hg19_v1_chr4_+_110749149_110749158	0.0319714	MSX1,2.p2	NM_006583|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog	BC128120|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog	BC128121|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog	BC128401|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog
hg19_v1_chr7_-_16505292_16505473	0.0315931	MSX1,2.p2	AB059270|SOSTDC1|25928|sclerostin domain containing 1	AK315682|SOSTDC1|25928|sclerostin domain containing 1	BC008484|SOSTDC1|25928|sclerostin domain containing 1	AF361494|SOSTDC1|25928|sclerostin domain containing 1	NM_015464|SOSTDC1|25928|sclerostin domain containing 1
hg19_v1_chr14_-_105259937_105259937	0.031473	MSX1,2.p2	BX648205|AKT1|207|v-akt murine thymoma viral oncogene homolog 1	NM_005163|AKT1|207|v-akt murine thymoma viral oncogene homolog 1
hg19_v1_chr6_-_39693110_39693180	0.0309381	MSX1,2.p2	BC117307|KIF6|221458|kinesin family member 6	BC143444|KIF6|221458|kinesin family member 6	BC143445|KIF6|221458|kinesin family member 6	AK131471|KIF6|221458|kinesin family member 6	NM_145027|KIF6|221458|kinesin family member 6
hg19_v1_chr4_-_66536182_66536212	0.0308335	MSX1,2.p2	AB209375|EPHA5|2044|EPH receptor A5
hg19_v1_chr2_-_209028288_209028365	0.0308288	MSX1,2.p2	EF426311|CRYGA|1418|crystallin, gamma A	NM_014617|CRYGA|1418|crystallin, gamma A	BC114456|CRYGA|1418|crystallin, gamma A
hg19_v1_chr11_+_131240370_131240568	0.0307874	MSX1,2.p2	NM_001048209|NTM|50863|neurotrimin	AK315964|NTM|50863|neurotrimin	AK293487|NTM|50863|neurotrimin	AY358331|NTM|50863|neurotrimin
hg19_v1_chrX_-_24690740_24690978	0.03049	MSX1,2.p2	BC045634|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	AK296333|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	AK226121|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta	NM_001163264|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta
hg19_v1_chr3_-_97754147_97754147	0.0297161	MSX1,2.p2	CR749263|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3	NM_001105580|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3
hg19_v1_chr7_-_23509972_23510024	0.0288906	MSX1,2.p2	BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3
hg19_v1_chr19_-_44079609_44079687	0.0287499	MSX1,2.p2	CR456728|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1	BC023593|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1	AB208781|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1
hg19_v1_chr5_-_35938736_35938880	0.0287294	MSX1,2.p2	NM_001042625|CAPSL|133690|calcyphosine-like	BC017586|CAPSL|133690|calcyphosine-like	NM_144647|CAPSL|133690|calcyphosine-like
hg19_v1_chr8_-_72274466_72274485	0.0280843	MSX1,2.p2	AJ000098|EYA1|2138|eyes absent homolog 1 (Drosophila)	NM_000503|EYA1|2138|eyes absent homolog 1 (Drosophila)
hg19_v1_chr3_+_46616044_46616044	0.0280837	MSX1,2.p2	NM_001174136|TDGF1|6997|teratocarcinoma-derived growth factor 1
hg19_v1_chr5_+_138211084_138211099	0.0278679	MSX1,2.p2	HQ589335|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v1_chr17_+_27370155_27370243	0.027829	MSX1,2.p2	AK022773|PIPOX|51268|pipecolic acid oxidase	BC027622|PIPOX|51268|pipecolic acid oxidase	AK027498|PIPOX|51268|pipecolic acid oxidase	AF134593|PIPOX|51268|pipecolic acid oxidase	AF136970|PIPOX|51268|pipecolic acid oxidase	DQ896538|PIPOX|51268|pipecolic acid oxidase	EU176447|PIPOX|51268|pipecolic acid oxidase	CR457155|PIPOX|51268|pipecolic acid oxidase
hg19_v1_chr11_-_102576444_102576467	0.0278159	MSX1,2.p2	AF195192|MMP27|64066|matrix metallopeptidase 27	AY358752|MMP27|64066|matrix metallopeptidase 27	NM_022122|MMP27|64066|matrix metallopeptidase 27
hg19_v1_chrX_+_123234462_123234598	0.0276114	MSX1,2.p2	AK026678|STAG2|10735|stromal antigen 2
hg19_v1_chr17_+_37856253_37856271	0.0273659	MSX1,2.p2	NM_004448|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
hg19_v1_chr19_+_4402658_4402775	0.0273278	MSX1,2.p2	BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)
hg19_v1_chr14_-_99947113_99947132	0.0263827	MSX1,2.p2	BC066931|SETD3|84193|SET domain containing 3	BX161441|SETD3|84193|SET domain containing 3
hg19_v1_chr1_+_167298280_167298317	0.025998	MSX1,2.p2	NM_001198783|POU2F1|5451|POU class 2 homeobox 1
hg19_v1_chr8_-_22089850_22089850	0.0259415	MSX1,2.p2	NM_001099335|PHYHIP|9796|phytanoyl-CoA 2-hydroxylase interacting protein	NM_014759|PHYHIP|9796|phytanoyl-CoA 2-hydroxylase interacting protein
hg19_v1_chr2_-_145277879_145277964	0.0259205	MSX1,2.p2	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2	BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2	AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2	BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2	NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2	NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2
hg19_v1_chr20_+_24929862_24929865	0.0253943	MSX1,2.p2	NM_003650|CST7|8530|cystatin F (leukocystatin)
hg19_v1_chr15_+_80351909_80351976	0.025184	MSX1,2.p2	NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6	NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6	NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6	NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6	NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6	AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6
hg19_v1_chr17_+_74868728_74868792	0.0245944	MSX1,2.p2	AB114297|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	NM_198955|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	BC144361|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
hg19_v1_chr11_-_104839263_104839331	0.0243059	MSX1,2.p2	U28979|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	BC008060|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	U28976|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	BC017839|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	U28014|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	AK225751|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	Z48810|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	U25804|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	AK296081|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	AK304222|CASP4|837|caspase 4, apoptosis-related cysteine peptidase	NM_001225|CASP4|837|caspase 4, apoptosis-related cysteine peptidase
hg19_v1_chr14_-_21567069_21567172	0.0238122	MSX1,2.p2	AK225811|ZNF219|51222|zinc finger protein 219	AK290700|ZNF219|51222|zinc finger protein 219	NM_001101672|ZNF219|51222|zinc finger protein 219
hg19_v1_chr6_+_50786438_50786632	0.0235666	MSX1,2.p2	NM_003221|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	BC037225|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	AK291172|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	AK313749|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	X95694|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	DQ891443|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	DQ894621|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
hg19_v1_chr3_-_165555167_165555220	0.0229287	MSX1,2.p2	M16474|BCHE|590|butyrylcholinesterase	BC018141|BCHE|590|butyrylcholinesterase	BC008396|BCHE|590|butyrylcholinesterase	AK292063|BCHE|590|butyrylcholinesterase	M16541|BCHE|590|butyrylcholinesterase
hg19_v1_chrM_+_8857_9057	0.022706	MSX1,2.p2	
hg19_v1_chr9_-_86584079_86584113	0.0225706	MSX1,2.p2	BC013220|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K
hg19_v1_chr6_-_130536417_130536493	0.0223762	MSX1,2.p2	BC029851|SAMD3|154075|sterile alpha motif domain containing 3	BC119757|SAMD3|154075|sterile alpha motif domain containing 3	BC119758|SAMD3|154075|sterile alpha motif domain containing 3	BC127653|SAMD3|154075|sterile alpha motif domain containing 3	BC127654|SAMD3|154075|sterile alpha motif domain containing 3	NM_152552|SAMD3|154075|sterile alpha motif domain containing 3
hg19_v1_chr14_+_95623991_95624052	0.0220309	MSX1,2.p2	BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)
hg19_v1_chr8_+_76452202_76452227	0.0219495	MSX1,2.p2	BX571750|HNF4G|3174|hepatocyte nuclear factor 4, gamma	NM_004133|HNF4G|3174|hepatocyte nuclear factor 4, gamma	EU832451|HNF4G|3174|hepatocyte nuclear factor 4, gamma	HQ692842|HNF4G|3174|hepatocyte nuclear factor 4, gamma
hg19_v1_chr12_-_52761254_52761308	0.0215903	MSX1,2.p2	X99140|KRT85|3891|keratin 85	NM_002283|KRT85|3891|keratin 85
hg19_v1_chr12_-_16759531_16759536	0.0215849	MSX1,2.p2	NM_018640|LMO3|55885|LIM domain only 3 (rhombotin-like 2)
hg19_v1_chr19_-_58485901_58485901	0.0215482	MSX1,2.p2	BC033933|C19orf18|147685|chromosome 19 open reading frame 18	NM_152474|C19orf18|147685|chromosome 19 open reading frame 18
hg19_v1_chr5_+_68666861_68666915	0.0213384	MSX1,2.p2	NM_133340|RAD17|5884|RAD17 homolog (S. pombe)	NM_133341|RAD17|5884|RAD17 homolog (S. pombe)	AJ001642|RAD17|5884|RAD17 homolog (S. pombe)	AJ004977|RAD17|5884|RAD17 homolog (S. pombe)	AF098533|RAD17|5884|RAD17 homolog (S. pombe)	AF098534|RAD17|5884|RAD17 homolog (S. pombe)
hg19_v1_chr2_-_165424993_165425016	0.0212394	MSX1,2.p2	AK309590|GRB14|2888|growth factor receptor-bound protein 14	AK301961|GRB14|2888|growth factor receptor-bound protein 14	AK302129|GRB14|2888|growth factor receptor-bound protein 14
hg19_v1_chr21_-_19775958_19775972	0.0212103	MSX1,2.p2	BC111749|TMPRSS15|5651|transmembrane protease, serine 15	NM_002772|TMPRSS15|5651|transmembrane protease, serine 15	U09860|TMPRSS15|5651|transmembrane protease, serine 15
hg19_v1_chr3_-_87325611_87325736	0.0211869	MSX1,2.p2	L18781|POU1F1|5449|POU class 1 homeobox 1	X72215|POU1F1|5449|POU class 1 homeobox 1	X62429|POU1F1|5449|POU class 1 homeobox 1	D10216|POU1F1|5449|POU class 1 homeobox 1	NM_000306|POU1F1|5449|POU class 1 homeobox 1	NM_001122757|POU1F1|5449|POU class 1 homeobox 1
hg19_v1_chr5_-_13944588_13944588	0.021101	MSX1,2.p2	AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5	NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5
hg19_v1_chr1_+_110882057_110882057	0.0210716	MSX1,2.p2	BC047479|RBM15|64783|RNA binding motif protein 15
hg19_v1_chr2_+_113885137_113885141	0.0208523	MSX1,2.p2	NM_173842|IL1RN|3557|interleukin 1 receptor antagonist
hg19_v1_chr5_-_148758787_148758857	0.020721	MSX1,2.p2	CR457192|IL17B|27190|interleukin 17B	BC113925|IL17B|27190|interleukin 17B	BC113946|IL17B|27190|interleukin 17B	AF152098|IL17B|27190|interleukin 17B	AF184969|IL17B|27190|interleukin 17B	AF218727|IL17B|27190|interleukin 17B	AY358931|IL17B|27190|interleukin 17B	AF110385|IL17B|27190|interleukin 17B	AF212311|IL17B|27190|interleukin 17B	NM_014443|IL17B|27190|interleukin 17B
hg19_v1_chr3_-_193096513_193096631	0.0203666	MSX1,2.p2	AY823163|ATP13A5|344905|ATPase type 13A5	NM_198505|ATP13A5|344905|ATPase type 13A5	AK122613|ATP13A5|344905|ATPase type 13A5
hg19_v1_chr1_+_201979689_201979728	0.0202897	MSX1,2.p2	NM_001114309|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	NM_004433|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AK309265|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AK312273|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	U97156|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	BC003569|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	U73843|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	U73844|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AF016295|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v1_chr19_+_46171501_46171514	0.020231	MSX1,2.p2	NM_000164|GIPR|2696|gastric inhibitory polypeptide receptor	U39231|GIPR|2696|gastric inhibitory polypeptide receptor	BC093723|GIPR|2696|gastric inhibitory polypeptide receptor	BC101673|GIPR|2696|gastric inhibitory polypeptide receptor	BC143300|GIPR|2696|gastric inhibitory polypeptide receptor	BC143302|GIPR|2696|gastric inhibitory polypeptide receptor	S79852|GIPR|2696|gastric inhibitory polypeptide receptor
hg19_v1_chr1_+_26644380_26644420	0.0202305	MSX1,2.p2	NM_001803|CD52|1043|CD52 molecule
hg19_v1_chr15_-_42749710_42749764	0.0200213	MSX1,2.p2	AL831983|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC029366|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC070244|ZFP106|64397|zinc finger protein 106 homolog (mouse)	AF205632|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC058023|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC111396|ZFP106|64397|zinc finger protein 106 homolog (mouse)	NM_022473|ZFP106|64397|zinc finger protein 106 homolog (mouse)	AK294529|ZFP106|64397|zinc finger protein 106 homolog (mouse)	AK091929|ZFP106|64397|zinc finger protein 106 homolog (mouse)
hg19_v1_chr9_+_111624545_111624602	0.0191871	MSX1,2.p2	BC014610|ACTL7A|10881|actin-like 7A	AK314981|ACTL7A|10881|actin-like 7A	NM_006687|ACTL7A|10881|actin-like 7A
hg19_v1_chr16_-_72128214_72128214	0.0191504	MSX1,2.p2	NM_001142318|TXNL4B|54957|thioredoxin-like 4B
hg19_v1_chr2_-_183387063_183387506	0.019071	MSX1,2.p2	AK295657|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ892369|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ893372|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ895578|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	DQ896694|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	AF110237|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	NM_005019|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	BC022480|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	AF110236|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	NM_001003683|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	U40370|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent	AK294239|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent
hg19_v1_chr1_+_104292278_104292279	0.0189622	MSX1,2.p2	NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)	AK292341|AMY1A|276|amylase, alpha 1A (salivary)
hg19_v1_chr10_-_74714563_74714581	0.0188222	MSX1,2.p2	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB
hg19_v1_chr6_+_31583766_31583888	0.0188073	MSX1,2.p2	NM_032955|AIF1|199|allograft inflammatory factor 1	EF070982|AIF1|199|allograft inflammatory factor 1	AF299327|AIF1|199|allograft inflammatory factor 1	CR542153|AIF1|199|allograft inflammatory factor 1
hg19_v1_chr5_+_161277391_161277391	0.0187405	MSX1,2.p2	NM_001127647|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v1_chr6_-_32977312_32977341	0.0185826	MSX1,2.p2	DQ891048|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	DQ894226|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947479|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947480|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947481|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947482|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	BC013183|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	M26039|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AK310153|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AK313551|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha
hg19_v1_chr3_+_56591237_56591255	0.0185243	MSX1,2.p2	AK125303|CCDC66|285331|coiled-coil domain containing 66	AL833326|CCDC66|285331|coiled-coil domain containing 66	AL832692|CCDC66|285331|coiled-coil domain containing 66	AK095688|CCDC66|285331|coiled-coil domain containing 66
hg19_v1_chr3_+_186383770_186383799	0.0184079	MSX1,2.p2	AK313381|HRG|3273|histidine-rich glycoprotein	BC069574|HRG|3273|histidine-rich glycoprotein	NM_000412|HRG|3273|histidine-rich glycoprotein	BC150591|HRG|3273|histidine-rich glycoprotein
hg19_v1_chr2_+_65216482_65216500	0.0183917	MSX1,2.p2	AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v1_chr13_-_36050758_36050835	0.0183733	MSX1,2.p2	BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)	AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)	AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)	AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)	AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)	NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)
hg19_v1_chr2_-_238322840_238322849	0.0181542	MSX1,2.p2	NM_004369|COL6A3|1293|collagen, type VI, alpha 3	NM_057164|COL6A3|1293|collagen, type VI, alpha 3	NM_057165|COL6A3|1293|collagen, type VI, alpha 3	NM_057166|COL6A3|1293|collagen, type VI, alpha 3	NM_057167|COL6A3|1293|collagen, type VI, alpha 3
hg19_v1_chr2_-_231789940_231789940	0.0181426	MSX1,2.p2	BC032694|GPR55|9290|G protein-coupled receptor 55	NM_005683|GPR55|9290|G protein-coupled receptor 55
hg19_v1_chr3_+_69915374_69915429	0.0180875	MSX1,2.p2	NM_198177|MITF|4286|microphthalmia-associated transcription factor	AB006989|MITF|4286|microphthalmia-associated transcription factor	AK297858|MITF|4286|microphthalmia-associated transcription factor
hg19_v1_chr12_+_54892567_54892567	0.0179653	MSX1,2.p2	AK300783|NCKAP1L|3071|NCK-associated protein 1-like	NM_001184976|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr2_+_103378489_103378676	0.017899	MSX1,2.p2	CR936735|TMEM182|130827|transmembrane protein 182	NM_144632|TMEM182|130827|transmembrane protein 182	CR936731|TMEM182|130827|transmembrane protein 182	CR936732|TMEM182|130827|transmembrane protein 182	AK129862|TMEM182|130827|transmembrane protein 182	BC130306|TMEM182|130827|transmembrane protein 182	BC130308|TMEM182|130827|transmembrane protein 182	HQ258113|TMEM182|130827|transmembrane protein 182
hg19_v1_chr15_+_65914269_65914269	0.017893	MSX1,2.p2	AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
hg19_v1_chr7_+_150725502_150725624	0.0177794	MSX1,2.p2	NM_007188|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK094636|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK002018|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK094005|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK222911|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK294344|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK310796|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK314721|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	BC141814|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	BC141836|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	BC151235|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AF047690|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK024401|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	BC143080|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8	BC146829|ABCB8|11194|ATP-binding cassette, sub-family B (MDR/TAP), member 8
hg19_v1_chr17_-_19651586_19651745	0.0177098	MSX1,2.p2	BC021194|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	BC008892|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	BC004370|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK314584|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK225513|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	M74542|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK093877|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK225505|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	BC004102|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	NM_000691|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1
hg19_v1_chr2_-_175499275_175499319	0.0175456	MSX1,2.p2	AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1	NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1	AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1	AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1
hg19_v1_chr3_-_42305438_42305438	0.0174426	MSX1,2.p2	BC008283|CCK|885|cholecystokinin	NM_001174138|CCK|885|cholecystokinin
hg19_v1_chr3_-_51909599_51909599	0.0173909	MSX1,2.p2	NM_001145059|IQCF5|389124|IQ motif containing F5
hg19_v1_chr14_-_91976630_91976644	0.0173573	MSX1,2.p2	NM_032560|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v1_chr6_-_25930838_25930945	0.0172839	MSX1,2.p2	U90544|SLC17A2|10246|solute carrier family 17 (sodium phosphate), member 2	NM_005835|SLC17A2|10246|solute carrier family 17 (sodium phosphate), member 2
hg19_v1_chr12_+_57828457_57828669	0.0170972	MSX1,2.p2	AK314849|INHBC|3626|inhibin, beta C	BC020693|INHBC|3626|inhibin, beta C	NM_005538|INHBC|3626|inhibin, beta C	BC130324|INHBC|3626|inhibin, beta C	BC130326|INHBC|3626|inhibin, beta C
hg19_v1_chr3_-_122102057_122102097	0.0169542	MSX1,2.p2	BC109378|CCDC58|131076|coiled-coil domain containing 58	BC054051|CCDC58|131076|coiled-coil domain containing 58	BC062725|CCDC58|131076|coiled-coil domain containing 58	NM_001017928|CCDC58|131076|coiled-coil domain containing 58
hg19_v1_chr12_-_102512277_102512360	0.0165951	MSX1,2.p2	AK026271|NUP37|79023|nucleoporin 37kDa	AF514994|NUP37|79023|nucleoporin 37kDa	BC000861|NUP37|79023|nucleoporin 37kDa	NM_024057|NUP37|79023|nucleoporin 37kDa
hg19_v1_chr14_-_68283293_68283306	0.0165086	MSX1,2.p2	AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26	AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26	CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26	CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26	AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26	NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26
hg19_v1_chr4_-_26491888_26492083	0.0164175	MSX1,2.p2	AY322549|CCKAR|886|cholecystokinin A receptor	BC074987|CCKAR|886|cholecystokinin A receptor	L13605|CCKAR|886|cholecystokinin A receptor	L19315|CCKAR|886|cholecystokinin A receptor	NM_000730|CCKAR|886|cholecystokinin A receptor	AK313978|CCKAR|886|cholecystokinin A receptor
hg19_v1_chr15_+_91769329_91769493	0.0162044	MSX1,2.p2	AB018278|SV2B|9899|synaptic vesicle glycoprotein 2B	CR457086|SV2B|9899|synaptic vesicle glycoprotein 2B	DQ891614|SV2B|9899|synaptic vesicle glycoprotein 2B	EU176590|SV2B|9899|synaptic vesicle glycoprotein 2B
hg19_v1_chr9_-_19786886_19787016	0.0160477	MSX1,2.p2	BC143889|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC069622|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AF097366|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AF177987|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_001193288|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_020344|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
hg19_v1_chr6_+_64231626_64231684	0.015608	MSX1,2.p2	CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1
hg19_v1_chr14_+_78870092_78870092	0.0155567	MSX1,2.p2	AB018286|NRXN3|9369|neurexin 3	BC152457|NRXN3|9369|neurexin 3	NM_004796|NRXN3|9369|neurexin 3
hg19_v1_chr3_-_196911001_196911001	0.0154529	MSX1,2.p2	AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)	NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)	NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)
hg19_v1_chr2_-_238322770_238322800	0.0153794	MSX1,2.p2	AK092021|COL6A3|1293|collagen, type VI, alpha 3	AK304870|COL6A3|1293|collagen, type VI, alpha 3	BC144595|COL6A3|1293|collagen, type VI, alpha 3	BC150625|COL6A3|1293|collagen, type VI, alpha 3	BC171790|COL6A3|1293|collagen, type VI, alpha 3
hg19_v1_chr2_+_171784947_171785035	0.0152375	MSX1,2.p2	NM_001201428|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa	AL117430|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa	AK125761|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa	NM_015530|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa
hg19_v1_chr8_-_93075190_93075190	0.0151219	MSX1,2.p2	D43638|RUNX1T1|862|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_004349|RUNX1T1|862|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v1_chr5_+_36608430_36608563	0.0151092	MSX1,2.p2	NM_001166695|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	U03504|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AY954110|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v1_chr19_+_36119934_36119950	0.0150398	MSX1,2.p2	BC031682|RBM42|79171|RNA binding motif protein 42
hg19_v1_chr2_-_134326030_134326047	0.0149964	MSX1,2.p2	AK057980|NCKAP5|344148|NCK-associated protein 5	NM_207363|NCKAP5|344148|NCK-associated protein 5	NM_207481|NCKAP5|344148|NCK-associated protein 5
hg19_v1_chr19_+_40872709_40872857	0.014845	MSX1,2.p2	BC000553|PLD3|23646|phospholipase D family, member 3
hg19_v1_chr20_-_45976626_45976669	0.0148387	MSX1,2.p2	DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8	DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8
hg19_v1_chr1_-_19217384_19217384	0.0146495	MSX1,2.p2	AK294552|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1	NM_001161504|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1
hg19_v1_chr20_-_35444558_35444683	0.014584	MSX1,2.p2	AK131491|KIAA0889|140710|KIAA0889
hg19_v1_chr2_+_228356287_228356295	0.0143008	MSX1,2.p2	AK295030|AGFG1|3267|ArfGAP with FG repeats 1
hg19_v1_chr1_-_26644755_26644853	0.0139734	MSX1,2.p2	NM_145345|UBXN11|91544|UBX domain protein 11	AK097368|UBXN11|91544|UBX domain protein 11
hg19_v1_chr17_+_67498391_67498569	0.0137619	MSX1,2.p2	U39064|MAP2K6|5608|mitogen-activated protein kinase kinase 6
hg19_v1_chr3_-_113897849_113897983	0.0137408	MSX1,2.p2	AY228457|DRD3|1814|dopamine receptor D3	AY228458|DRD3|1814|dopamine receptor D3	NM_000796|DRD3|1814|dopamine receptor D3	NM_033663|DRD3|1814|dopamine receptor D3	AY228454|DRD3|1814|dopamine receptor D3
hg19_v1_chr7_+_90338711_90338855	0.0133138	MSX1,2.p2	AB020641|CDK14|5218|cyclin-dependent kinase 14	BC152436|CDK14|5218|cyclin-dependent kinase 14	BC167152|CDK14|5218|cyclin-dependent kinase 14	BC167156|CDK14|5218|cyclin-dependent kinase 14	NM_012395|CDK14|5218|cyclin-dependent kinase 14	BC136477|CDK14|5218|cyclin-dependent kinase 14	AK289782|CDK14|5218|cyclin-dependent kinase 14	BC152388|CDK14|5218|cyclin-dependent kinase 14
hg19_v1_chr2_-_215896809_215896809	0.0129527	MSX1,2.p2	AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12
hg19_v1_chr9_-_21482311_21482311	0.0128468	MSX1,2.p2	AY358570|IFNE|338376|interferon, epsilon	NM_176891|IFNE|338376|interferon, epsilon
hg19_v1_chr2_+_113885145_113885263	0.0128079	MSX1,2.p2	AK290926|IL1RN|3557|interleukin 1 receptor antagonist	X52015|IL1RN|3557|interleukin 1 receptor antagonist	X53296|IL1RN|3557|interleukin 1 receptor antagonist
hg19_v1_chr16_-_3085541_3085541	0.0123244	MSX1,2.p2	BC128602|CCDC64B|146439|coiled-coil domain containing 64B	NM_001103175|CCDC64B|146439|coiled-coil domain containing 64B
hg19_v1_chr19_-_36399183_36399202	0.0122287	MSX1,2.p2	AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein	BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein	AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein
hg19_v1_chr2_-_162931051_162931062	0.0118118	MSX1,2.p2	BC065265|DPP4|1803|dipeptidyl-peptidase 4	NM_001935|DPP4|1803|dipeptidyl-peptidase 4
hg19_v1_chr1_+_31769826_31769845	0.0114259	MSX1,2.p2	AK022506|ZCCHC17|51538|zinc finger, CCHC domain containing 17	NM_016505|ZCCHC17|51538|zinc finger, CCHC domain containing 17
hg19_v1_chr1_+_201979747_201979821	0.0113704	MSX1,2.p2	U66894|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AK225446|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AF517841|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v1_chr11_-_40315663_40315663	0.0112654	MSX1,2.p2	AB046800|LRRC4C|57689|leucine rich repeat containing 4C	NM_020929|LRRC4C|57689|leucine rich repeat containing 4C
hg19_v1_chr16_-_69385656_69385711	0.0112558	MSX1,2.p2	DQ891397|TMED6|146456|transmembrane emp24 protein transport domain containing 6	DQ894576|TMED6|146456|transmembrane emp24 protein transport domain containing 6	AY358268|TMED6|146456|transmembrane emp24 protein transport domain containing 6	BC020827|TMED6|146456|transmembrane emp24 protein transport domain containing 6	NM_144676|TMED6|146456|transmembrane emp24 protein transport domain containing 6
hg19_v1_chr11_+_15133969_15133969	0.0111495	MSX1,2.p2	AB236159|INSC|387755|inscuteable homolog (Drosophila)	NM_001031853|INSC|387755|inscuteable homolog (Drosophila)
hg19_v1_chr2_+_166095911_166095954	0.0106987	MSX1,2.p2	AK289656|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	NM_001040142|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	DQ993531|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	BC029489|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	BC047398|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	BC048417|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit
hg19_v1_chr17_+_56769929_56769941	0.0104067	MSX1,2.p2	BC107753|RAD51C|5889|RAD51 homolog C (S. cerevisiae)
hg19_v1_chr4_-_156787377_156787424	0.0100967	MSX1,2.p2	AJ252011|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal	NM_017419|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal
hg19_v1_chr4_+_15429628_15429667	0.0100612	MSX1,2.p2	NM_031911|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7	AF329839|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7
hg19_v1_chr12_-_91398757_91398802	0.00991968	MSX1,2.p2	AK290642|EPYC|1833|epiphycan	BC030958|EPYC|1833|epiphycan	NM_004950|EPYC|1833|epiphycan
hg19_v1_chr2_-_192711923_192712020	0.00965559	MSX1,2.p2	AK290378|SDPR|8436|serum deprivation response	NM_004657|SDPR|8436|serum deprivation response
hg19_v1_chr12_-_93323006_93323081	0.00956991	MSX1,2.p2	BC017837|EEA1|8411|early endosome antigen 1	AK292008|EEA1|8411|early endosome antigen 1	AK307918|EEA1|8411|early endosome antigen 1
hg19_v1_chr12_-_21654484_21654602	0.00956536	MSX1,2.p2	BC001052|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)	AK291627|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)	NM_002907|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)	NM_032941|RECQL|5965|RecQ protein-like (DNA helicase Q1-like)
hg19_v1_chr11_-_102323353_102323874	0.0094411	MSX1,2.p2	DQ891654|TMEM123|114908|transmembrane protein 123	DQ894842|TMEM123|114908|transmembrane protein 123	AY358696|TMEM123|114908|transmembrane protein 123	BC032296|TMEM123|114908|transmembrane protein 123	AY157580|TMEM123|114908|transmembrane protein 123	AK075420|TMEM123|114908|transmembrane protein 123	AY008283|TMEM123|114908|transmembrane protein 123	AK225790|TMEM123|114908|transmembrane protein 123	NM_052932|TMEM123|114908|transmembrane protein 123
hg19_v1_chr14_-_24683035_24683035	0.00926659	MSX1,2.p2	BC113533|CHMP4A|29082|charged multivesicular body protein 4A	BC113535|CHMP4A|29082|charged multivesicular body protein 4A	BC143834|CHMP4A|29082|charged multivesicular body protein 4A	NM_014169|CHMP4A|29082|charged multivesicular body protein 4A
hg19_v1_chr2_-_238322815_238322828	0.00910473	MSX1,2.p2	X52022|COL6A3|1293|collagen, type VI, alpha 3
hg19_v1_chr4_+_148538508_148538559	0.00898927	MSX1,2.p2	BC046128|TMEM184C|55751|transmembrane protein 184C	NM_018241|TMEM184C|55751|transmembrane protein 184C
hg19_v1_chr21_+_39628663_39628663	0.00856412	MSX1,2.p2	BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v1_chr10_+_124320180_124320272	0.00849102	MSX1,2.p2	AF159456|DMBT1|1755|deleted in malignant brain tumors 1	AJ000342|DMBT1|1755|deleted in malignant brain tumors 1	AJ243212|DMBT1|1755|deleted in malignant brain tumors 1	AJ243224|DMBT1|1755|deleted in malignant brain tumors 1	NM_004406|DMBT1|1755|deleted in malignant brain tumors 1	NM_007329|DMBT1|1755|deleted in malignant brain tumors 1	NM_017579|DMBT1|1755|deleted in malignant brain tumors 1	BC153299|DMBT1|1755|deleted in malignant brain tumors 1	AJ297935|DMBT1|1755|deleted in malignant brain tumors 1	AK304149|DMBT1|1755|deleted in malignant brain tumors 1	AK304128|DMBT1|1755|deleted in malignant brain tumors 1
hg19_v1_chr6_-_49754899_49755052	0.00831295	MSX1,2.p2	BC038843|PGK2|5232|phosphoglycerate kinase 2	AK312770|PGK2|5232|phosphoglycerate kinase 2	NM_138733|PGK2|5232|phosphoglycerate kinase 2
hg19_v1_chr7_-_104909442_104909525	0.00785192	MSX1,2.p2	BC035214|SRPK2|6733|SRSF protein kinase 2	U88666|SRPK2|6733|SRSF protein kinase 2	NM_182691|SRPK2|6733|SRSF protein kinase 2
hg19_v1_chr1_+_116654375_116654375	0.0076833	MSX1,2.p2	AK096035|MAB21L3|126868|mab-21-like 3 (C. elegans)	NM_152367|MAB21L3|126868|mab-21-like 3 (C. elegans)
hg19_v1_chr17_+_39388714_39388751	0.00764347	MSX1,2.p2	AJ406947|KRTAP9-3|83900|keratin associated protein 9-3	NM_031962|KRTAP9-3|83900|keratin associated protein 9-3	BC074918|KRTAP9-3|83900|keratin associated protein 9-3	BC074919|KRTAP9-3|83900|keratin associated protein 9-3	AJ406951|KRTAP9-9|81870|keratin associated protein 9-9
hg19_v1_chr5_+_86676620_86676755	0.00749191	MSX1,2.p2	
hg19_v1_chr1_+_3541550_3541579	0.00721435	MSX1,2.p2	NM_182752|TPRG1L|127262|tumor protein p63 regulated 1-like	AK096427|TPRG1L|127262|tumor protein p63 regulated 1-like
hg19_v1_chr12_+_7169192_7169204	0.00716814	MSX1,2.p2	
hg19_v1_chr21_-_31538970_31539043	0.0070978	MSX1,2.p2	BC101503|CLDN17|26285|claudin 17	BC101505|CLDN17|26285|claudin 17	NM_012131|CLDN17|26285|claudin 17	AY358094|CLDN17|26285|claudin 17
hg19_v1_chr2_-_211018294_211018388	0.00708985	MSX1,2.p2	AK074441|C2orf67|151050|chromosome 2 open reading frame 67	BC070141|C2orf67|151050|chromosome 2 open reading frame 67
hg19_v1_chr4_-_155533757_155533797	0.00673347	MSX1,2.p2	BT007081|FGG|2266|fibrinogen gamma chain
hg19_v1_chr7_-_130371305_130371405	0.00657287	MSX1,2.p2	AF294347|TSGA13|114960|testis specific, 13	AF431815|TSGA13|114960|testis specific, 13	BC038415|TSGA13|114960|testis specific, 13	NM_052933|TSGA13|114960|testis specific, 13
hg19_v1_chrX_-_153602928_153602972	0.00630847	MSX1,2.p2	X53416|FLNA|2316|filamin A, alpha
hg19_v1_chr1_+_201751757_201751814	0.00606863	MSX1,2.p2	AB033039|NAV1|89796|neuron navigator 1
hg19_v1_chr12_+_50344523_50344613	0.00606243	MSX1,2.p2	AK225940|AQP2|359|aquaporin 2 (collecting duct)	NM_000486|AQP2|359|aquaporin 2 (collecting duct)	BC042496|AQP2|359|aquaporin 2 (collecting duct)	S73196|AQP2|359|aquaporin 2 (collecting duct)	S73197|AQP2|359|aquaporin 2 (collecting duct)	CR542024|AQP2|359|aquaporin 2 (collecting duct)
hg19_v1_chr2_+_102803432_102803465	0.00601216	MSX1,2.p2	AF284434|IL1RL2|8808|interleukin 1 receptor-like 2	NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2	U49065|IL1RL2|8808|interleukin 1 receptor-like 2	BC107064|IL1RL2|8808|interleukin 1 receptor-like 2
hg19_v1_chr6_+_29624757_29624992	0.00596879	MSX1,2.p2	NM_001008228|MOG|4340|myelin oligodendrocyte glycoprotein	NM_001008229|MOG|4340|myelin oligodendrocyte glycoprotein	NM_001170418|MOG|4340|myelin oligodendrocyte glycoprotein	NM_002433|MOG|4340|myelin oligodendrocyte glycoprotein	NM_206809|MOG|4340|myelin oligodendrocyte glycoprotein	NM_206810|MOG|4340|myelin oligodendrocyte glycoprotein	NM_206811|MOG|4340|myelin oligodendrocyte glycoprotein	NM_206812|MOG|4340|myelin oligodendrocyte glycoprotein	NM_206814|MOG|4340|myelin oligodendrocyte glycoprotein	AK308949|MOG|4340|myelin oligodendrocyte glycoprotein	AB209815|MOG|4340|myelin oligodendrocyte glycoprotein	BC035938|MOG|4340|myelin oligodendrocyte glycoprotein	AK312892|MOG|4340|myelin oligodendrocyte glycoprotein	AK295213|MOG|4340|myelin oligodendrocyte glycoprotein	AY566852|MOG|4340|myelin oligodendrocyte glycoprotein	DQ892374|MOG|4340|myelin oligodendrocyte glycoprotein	DQ895585|MOG|4340|myelin oligodendrocyte glycoprotein	DQ895586|MOG|4340|myelin oligodendrocyte glycoprotein	EU176510|MOG|4340|myelin oligodendrocyte glycoprotein	U18798|MOG|4340|myelin oligodendrocyte glycoprotein	U18799|MOG|4340|myelin oligodendrocyte glycoprotein	U18800|MOG|4340|myelin oligodendrocyte glycoprotein	U18801|MOG|4340|myelin oligodendrocyte glycoprotein	U18803|MOG|4340|myelin oligodendrocyte glycoprotein	U18840|MOG|4340|myelin oligodendrocyte glycoprotein	U18843|MOG|4340|myelin oligodendrocyte glycoprotein	X74511|MOG|4340|myelin oligodendrocyte glycoprotein	AY566847|MOG|4340|myelin oligodendrocyte glycoprotein	AY566848|MOG|4340|myelin oligodendrocyte glycoprotein	AY566851|MOG|4340|myelin oligodendrocyte glycoprotein	AY566853|MOG|4340|myelin oligodendrocyte glycoprotein	AY566854|MOG|4340|myelin oligodendrocyte glycoprotein
hg19_v1_chr9_+_1050333_1050356	0.00593972	MSX1,2.p2	BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2	NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2	BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2	NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2	AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2	AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2
hg19_v1_chr4_-_54457723_54457765	0.00563293	MSX1,2.p2	AK056823|LNX1|84708|ligand of numb-protein X 1	NM_001126328|LNX1|84708|ligand of numb-protein X 1
hg19_v1_chr10_-_98325100_98325183	0.00554214	MSX1,2.p2	AK000756|TM9SF3|56889|transmembrane 9 superfamily member 3
hg19_v1_chr20_-_34543280_34543280	0.00546371	MSX1,2.p2	NM_016558|SCAND1|51282|SCAN domain containing 1
hg19_v1_chrX_-_153602998_153603005	0.00538051	MSX1,2.p2	AK125630|FLNA|2316|filamin A, alpha	GU727643|FLNA|2316|filamin A, alpha	NM_001110556|FLNA|2316|filamin A, alpha	NM_001456|FLNA|2316|filamin A, alpha
hg19_v1_chr16_+_2016874_2016874	0.00521648	MSX1,2.p2	BC113014|RNF151|146310|ring finger protein 151	NM_174903|RNF151|146310|ring finger protein 151
hg19_v1_chr1_+_3541587_3541632	0.00495257	MSX1,2.p2	AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like	AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like	BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like
hg19_v1_chr20_-_5931036_5931210	0.00486713	MSX1,2.p2	AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)
hg19_v1_chr5_+_109025135_109025155	0.00450715	MSX1,2.p2	NM_002372|MAN2A1|4124|mannosidase, alpha, class 2A, member 1
hg19_v1_chr11_-_129062092_129062092	0.0044158	MSX1,2.p2	EF127492|ARHGAP32|9743|Rho GTPase activating protein 32	NM_001142685|ARHGAP32|9743|Rho GTPase activating protein 32
hg19_v1_chr14_-_24584125_24584243	0.00417987	MSX1,2.p2	BX161381|NRL|4901|neural retina leucine zipper
hg19_v1_chr13_+_49684388_49684524	0.00407505	MSX1,2.p2	AK302415|FNDC3A|22862|fibronectin type III domain containing 3A	AJ749707|FNDC3A|22862|fibronectin type III domain containing 3A	NM_014923|FNDC3A|22862|fibronectin type III domain containing 3A	AB023187|FNDC3A|22862|fibronectin type III domain containing 3A	BC107793|FNDC3A|22862|fibronectin type III domain containing 3A
hg19_v1_chr4_+_106473776_106473788	0.00396904	MSX1,2.p2	AK000191|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38	NM_001242729|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38	NM_017700|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38	BC105695|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38
hg19_v1_chr12_+_21654698_21654739	0.00389666	MSX1,2.p2	NM_016072|GOLT1B|51026|golgi transport 1B	AK311331|GOLT1B|51026|golgi transport 1B	AF068292|GOLT1B|51026|golgi transport 1B	AK309736|GOLT1B|51026|golgi transport 1B
hg19_v1_chr4_-_24981769_24981825	0.0038455	MSX1,2.p2	AK302905|CCDC149|91050|coiled-coil domain containing 149	AL834257|CCDC149|91050|coiled-coil domain containing 149	NM_173463|CCDC149|91050|coiled-coil domain containing 149
hg19_v1_chr1_-_3816704_3816822	0.00370892	MSX1,2.p2	BC035643|C1orf174|339448|chromosome 1 open reading frame 174	BC047611|C1orf174|339448|chromosome 1 open reading frame 174
hg19_v1_chr1_-_149900143_149900235	0.00367779	MSX1,2.p2	NM_005850|SF3B4|10262|splicing factor 3b, subunit 4, 49kDa	AK097315|SF3B4|10262|splicing factor 3b, subunit 4, 49kDa
hg19_v1_chr11_+_61717355_61717355	0.00361781	MSX1,2.p2	BC015220|BEST1|7439|bestrophin 1	NM_001139443|BEST1|7439|bestrophin 1	NM_004183|BEST1|7439|bestrophin 1
hg19_v1_chr3_+_149192367_149192437	0.00359648	MSX1,2.p2	NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4
hg19_v1_chr3_+_183894736_183894836	0.00358259	MSX1,2.p2	U36188|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	DQ892876|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	DQ895915|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	BT007308|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit
hg19_v1_chr8_-_38008332_38008599	0.00356296	MSX1,2.p2	CR456803|STAR|6770|steroidogenic acute regulatory protein	CR541850|STAR|6770|steroidogenic acute regulatory protein	DQ891806|STAR|6770|steroidogenic acute regulatory protein	DQ894990|STAR|6770|steroidogenic acute regulatory protein	BC010550|STAR|6770|steroidogenic acute regulatory protein	AF035277|STAR|6770|steroidogenic acute regulatory protein	U17280|STAR|6770|steroidogenic acute regulatory protein	AK315122|STAR|6770|steroidogenic acute regulatory protein	BX647744|STAR|6770|steroidogenic acute regulatory protein	AK090513|STAR|6770|steroidogenic acute regulatory protein	S79669|STAR|6770|steroidogenic acute regulatory protein	NM_000349|STAR|6770|steroidogenic acute regulatory protein
hg19_v1_chr10_-_123353771_123353771	0.00344528	MSX1,2.p2	AK308621|FGFR2|2263|fibroblast growth factor receptor 2	NM_001144916|FGFR2|2263|fibroblast growth factor receptor 2
hg19_v1_chr5_-_42811959_42812023	0.00330605	MSX1,2.p2	Z11793|SEPP1|6414|selenoprotein P, plasma, 1	BC040075|SEPP1|6414|selenoprotein P, plasma, 1	BC046152|SEPP1|6414|selenoprotein P, plasma, 1	BC058919|SEPP1|6414|selenoprotein P, plasma, 1	AK225801|SEPP1|6414|selenoprotein P, plasma, 1	AL833145|SEPP1|6414|selenoprotein P, plasma, 1	BC005244|SEPP1|6414|selenoprotein P, plasma, 1	BC015875|SEPP1|6414|selenoprotein P, plasma, 1	BC030009|SEPP1|6414|selenoprotein P, plasma, 1	NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1	NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1	NM_005410|SEPP1|6414|selenoprotein P, plasma, 1
hg19_v1_chr6_+_101846668_101846686	0.00316574	MSX1,2.p2	BC037954|GRIK2|2898|glutamate receptor, ionotropic, kainate 2
hg19_v1_chrX_+_12924738_12924777	0.00273404	MSX1,2.p2	AK314240|TLR8|51311|toll-like receptor 8	NM_138636|TLR8|51311|toll-like receptor 8	AF246971|TLR8|51311|toll-like receptor 8	AY358296|TLR8|51311|toll-like receptor 8	BC101074|TLR8|51311|toll-like receptor 8	BC101075|TLR8|51311|toll-like receptor 8	BC101076|TLR8|51311|toll-like receptor 8	BC101077|TLR8|51311|toll-like receptor 8	AF245703|TLR8|51311|toll-like receptor 8
hg19_v1_chr16_+_56485423_56485433	0.00270575	MSX1,2.p2	NM_018233|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK022752|OGFOD1|55239|2-oxoglutarate and iron-dependent oxygenase domain containing 1
hg19_v1_chr9_+_134305476_134305488	0.00251379	MSX1,2.p2	NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B
hg19_v1_chr11_-_6640644_6640644	0.00240883	MSX1,2.p2	AF017456|TPP1|1200|tripeptidyl peptidase I
hg19_v1_chr10_+_115511212_115511212	0.00218871	MSX1,2.p2	AK128811|C10orf81|79949|chromosome 10 open reading frame 81	NM_001193434|C10orf81|79949|chromosome 10 open reading frame 81	NM_001193435|C10orf81|79949|chromosome 10 open reading frame 81	NM_024889|C10orf81|79949|chromosome 10 open reading frame 81
hg19_v1_chr5_-_169724817_169724885	0.00216508	MSX1,2.p2	NM_005565|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v1_chr7_+_120629444_120629444	0.00203797	MSX1,2.p2	NM_001105533|C7orf58|79974|chromosome 7 open reading frame 58
hg19_v1_chr13_-_99959649_99959748	0.00202381	MSX1,2.p2	AK223390|GPR183|1880|G protein-coupled receptor 183	BC020752|GPR183|1880|G protein-coupled receptor 183	AK292091|GPR183|1880|G protein-coupled receptor 183	AK313443|GPR183|1880|G protein-coupled receptor 183	NM_004951|GPR183|1880|G protein-coupled receptor 183
hg19_v1_chr19_+_52264452_52264464	0.00199542	MSX1,2.p2	NM_001005738|FPR2|2358|formyl peptide receptor 2	M88107|FPR2|2358|formyl peptide receptor 2	D10922|FPR2|2358|formyl peptide receptor 2	AK290557|FPR2|2358|formyl peptide receptor 2
hg19_v1_chr17_+_70117168_70117173	0.00186279	MSX1,2.p2	BC056420|SOX9|6662|SRY (sex determining region Y)-box 9	Z46629|SOX9|6662|SRY (sex determining region Y)-box 9
hg19_v1_chr1_-_242612757_242612783	0.00175771	MSX1,2.p2	AK091691|PLD5|200150|phospholipase D family, member 5	AK307857|PLD5|200150|phospholipase D family, member 5	AK295421|PLD5|200150|phospholipase D family, member 5	AY461578|PLD5|200150|phospholipase D family, member 5	NM_001195811|PLD5|200150|phospholipase D family, member 5	NM_001195812|PLD5|200150|phospholipase D family, member 5
hg19_v1_chr1_-_68915631_68915641	0.00166716	MSX1,2.p2	AK289925|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	BC075035|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	BC075036|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	NM_000329|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	U18991|RPE65|6121|retinal pigment epithelium-specific protein 65kDa
hg19_v1_chr4_-_83347222_83347249	0.00164846	MSX1,2.p2	X75683|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like
hg19_v1_chr5_-_169724734_169724776	0.00164286	MSX1,2.p2	BC016618|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	AK310369|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v1_chr3_+_99833773_99833773	0.00139163	MSX1,2.p2	AK300704|C3orf26|84319|chromosome 3 open reading frame 26	NM_001167924|C3orf26|84319|chromosome 3 open reading frame 26
hg19_v1_chr6_-_161694992_161695129	0.00135226	MSX1,2.p2	AK295826|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AF156776|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AY358506|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	BC020209|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK295548|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK295025|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	CR627395|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AJ420473|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK299721|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK074208|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK297636|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	NM_020133|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
hg19_v1_chr4_+_54292035_54292107	0.00126414	MSX1,2.p2	BC026724|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)
hg19_v1_chr6_-_114384008_114384041	0.00126185	MSX1,2.p2	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
hg19_v1_chrX_+_47004633_47004656	0.00120196	MSX1,2.p2	AK000962|RBM10|8241|RNA binding motif protein 10
hg19_v1_chr8_+_107738239_107738471	0.00108134	MSX1,2.p2	AK303695|OXR1|55074|oxidation resistance 1	NM_001198534|OXR1|55074|oxidation resistance 1	NM_001198535|OXR1|55074|oxidation resistance 1	AB075503|OXR1|55074|oxidation resistance 1	AK302844|OXR1|55074|oxidation resistance 1	AK316153|OXR1|55074|oxidation resistance 1	FN650109|OXR1|55074|oxidation resistance 1
hg19_v1_chr13_+_103459495_103459825	0.000884894	MSX1,2.p2	NM_001204425|BIVM-ERCC5|100533467|BIVM-ERCC5 readthrough	BC075084|BIVM|54841|basic, immunoglobulin-like variable motif containing	BC075085|BIVM|54841|basic, immunoglobulin-like variable motif containing	AB209312|BIVM-ERCC5|100533467|BIVM-ERCC5 readthrough	AK000166|BIVM|54841|basic, immunoglobulin-like variable motif containing	AK225229|BIVM|54841|basic, immunoglobulin-like variable motif containing	BC020663|BIVM|54841|basic, immunoglobulin-like variable motif containing	BC051813|BIVM|54841|basic, immunoglobulin-like variable motif containing
hg19_v1_chr12_-_21487831_21487833	0.000884763	MSX1,2.p2	NM_021094|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2	AK296044|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2
hg19_v1_chr9_-_86595167_86595183	0.000778393	MSX1,2.p2	NM_031263|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K
hg19_v1_chr13_+_102104941_102105049	0.000733879	MSX1,2.p2	AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)
hg19_v1_chrX_+_47004609_47004617	0.000718394	MSX1,2.p2	NM_001204466|RBM10|8241|RNA binding motif protein 10	NM_001204467|RBM10|8241|RNA binding motif protein 10	NM_001204468|RBM10|8241|RNA binding motif protein 10	NM_005676|RBM10|8241|RNA binding motif protein 10	NM_152856|RBM10|8241|RNA binding motif protein 10
hg19_v1_chrX_+_47004619_47004631	0.000580701	MSX1,2.p2	BC008733|RBM10|8241|RNA binding motif protein 10
hg19_v1_chrX_-_62974987_62975004	0.000562277	MSX1,2.p2	BC018106|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9	BC043497|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9	AB007884|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v1_chr18_+_3594056_3594228	0.000533926	MSX1,2.p2	AK093095|FLJ35776|649446|uncharacterized LOC649446	BC137437|FLJ35776|649446|uncharacterized LOC649446
hg19_v1_chr3_-_15798057_15798097	0.00028106	MSX1,2.p2	AY367056|ANKRD28|23243|ankyrin repeat domain 28	NM_001195099|ANKRD28|23243|ankyrin repeat domain 28	BC035170|ANKRD28|23243|ankyrin repeat domain 28	BC048975|ANKRD28|23243|ankyrin repeat domain 28
hg19_v1_chr14_-_50474237_50474237	0.000212125	MSX1,2.p2	AK091232|C14orf182|283551|chromosome 14 open reading frame 182	NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182
