hg19_v2_chr8_+_120079478_120079499	1.68251	FOXA3_FOXC2	ENST00000332843.2|COLEC10|ENSG00000184374.2|collectin sub-family member 10 (C-type lectin)
hg19_v2_chr11_-_108464465_108464507	1.55859	FOXA3_FOXC2	ENST00000525344.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr7_+_151038850_151038915	1.04522	FOXA3_FOXC2	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr1_+_74701062_74701099	1.0013	FOXA3_FOXC2	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr1_-_201096312_201096312	0.977956	FOXA3_FOXC2	ENST00000449188.2|ASCL5|ENSG00000232237.2|achaete-scute family bHLH transcription factor 5
hg19_v2_chr5_+_156712372_156712440	0.959844	FOXA3_FOXC2	ENST00000541131.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chrX_-_15402498_15402515	0.861182	FOXA3_FOXC2	ENST00000297904.3|FIGF|ENSG00000165197.4|c-fos induced growth factor (vascular endothelial growth factor D)
hg19_v2_chr20_+_9494987_9495027	0.84221	FOXA3_FOXC2	ENST00000427562.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5 	ENST00000246070.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5
hg19_v2_chr8_+_104384616_104384661	0.816139	FOXA3_FOXC2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chrX_+_9431324_9431371	0.760533	FOXA3_FOXC2	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr10_+_71561649_71561703	0.748961	FOXA3_FOXC2	ENST00000398978.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000354547.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000357811.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr1_-_57431679_57431810	0.719421	FOXA3_FOXC2	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr10_+_71561704_71561874	0.673914	FOXA3_FOXC2	ENST00000520267.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr17_-_29641084_29641103	0.658398	FOXA3_FOXC2	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr11_+_62186498_62186515	0.622055	FOXA3_FOXC2	ENST00000278282.2|SCGB1A1|ENSG00000149021.2|secretoglobin, family 1A, member 1 (uteroglobin)
hg19_v2_chr1_+_101361782_101361810	0.610092	FOXA3_FOXC2	ENST00000357650.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr2_+_162272605_162272753	0.609988	FOXA3_FOXC2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr20_+_52105495_52105495	0.58628	FOXA3_FOXC2	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr10_+_71561630_71561644	0.58135	FOXA3_FOXC2	ENST00000398974.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398971.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398968.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398966.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398964.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398969.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000356340.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398972.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398973.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr11_+_20044096_20044116	0.569273	FOXA3_FOXC2	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr1_-_207095212_207095278	0.568035	FOXA3_FOXC2	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr4_-_70826725_70826725	0.562384	FOXA3_FOXC2	ENST00000353151.3|CSN2|ENSG00000135222.6|casein beta
hg19_v2_chr17_+_74372662_74372742	0.56157	FOXA3_FOXC2	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr2_-_175711133_175711158	0.554654	FOXA3_FOXC2	ENST00000409597.1|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000413882.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr22_+_21128167_21128167	0.540124	FOXA3_FOXC2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr11_-_108464321_108464380	0.511942	FOXA3_FOXC2	ENST00000265843.4|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr3_+_108855558_108855733	0.49829	FOXA3_FOXC2	ENST00000467240.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000477643.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000479039.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000593799.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1
hg19_v2_chr1_-_207095324_207095357	0.457115	FOXA3_FOXC2	ENST00000530505.1|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000367091.3|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000442471.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr4_-_164534657_164534701	0.453771	FOXA3_FOXC2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr6_+_37897735_37897837	0.452738	FOXA3_FOXC2	ENST00000373389.5|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr2_+_58655461_58655492	0.432278	FOXA3_FOXC2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr6_-_87804815_87804830	0.424657	FOXA3_FOXC2	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr18_-_25616519_25616549	0.424074	FOXA3_FOXC2	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr5_-_137674000_137674044	0.420837	FOXA3_FOXC2	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr7_-_115670804_115670867	0.409575	FOXA3_FOXC2	ENST00000320239.7|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr3_-_116163830_116163855	0.39851	FOXA3_FOXC2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr4_+_169013666_169013697	0.387471	FOXA3_FOXC2	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr9_-_14722715_14722738	0.386892	FOXA3_FOXC2	ENST00000380911.3|CER1|ENSG00000147869.4|cerberus 1, DAN family BMP antagonist
hg19_v2_chr3_+_69985792_69985874	0.376233	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr16_-_87970122_87970122	0.369008	FOXA3_FOXC2	ENST00000309893.2|CA5A|ENSG00000174990.3|carbonic anhydrase VA, mitochondrial
hg19_v2_chr10_+_70847852_70847874	0.367157	FOXA3_FOXC2	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr4_+_79567314_79567348	0.357261	FOXA3_FOXC2	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr18_+_3449330_3449411	0.347243	FOXA3_FOXC2	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr5_-_58571935_58571951	0.34679	FOXA3_FOXC2	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr3_-_186080012_186080030	0.32011	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr3_+_50712672_50712703	0.318831	FOXA3_FOXC2	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr1_-_169555779_169555826	0.313309	FOXA3_FOXC2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr4_-_70080449_70080449	0.310433	FOXA3_FOXC2	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chr1_+_239882842_239882850	0.307842	FOXA3_FOXC2	ENST00000448020.1|CHRM3|ENSG00000133019.7|cholinergic receptor, muscarinic 3
hg19_v2_chr3_-_107941209_107941227	0.306164	FOXA3_FOXC2	ENST00000492106.1|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr10_+_71562180_71562291	0.304154	FOXA3_FOXC2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr3_+_130569429_130569479	0.301371	FOXA3_FOXC2	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr3_+_148447887_148447911	0.299088	FOXA3_FOXC2	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr3_+_130569592_130569620	0.298501	FOXA3_FOXC2	ENST00000533801.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr11_-_85397167_85397320	0.291468	FOXA3_FOXC2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr2_+_113885138_113885181	0.285952	FOXA3_FOXC2	ENST00000409930.3|IL1RN|ENSG00000136689.14|interleukin 1 receptor antagonist
hg19_v2_chr4_+_79567362_79567380	0.285429	FOXA3_FOXC2	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr7_+_134576317_134576374	0.281351	FOXA3_FOXC2	ENST00000424922.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000495522.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr3_-_71294304_71294332	0.281097	FOXA3_FOXC2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr7_+_86273218_86273242	0.277871	FOXA3_FOXC2	ENST00000361669.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr6_-_161085291_161085308	0.277677	FOXA3_FOXC2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr1_-_152332480_152332484	0.274194	FOXA3_FOXC2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr10_-_4285923_4286104	0.273371	FOXA3_FOXC2	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr4_-_123377880_123377880	0.271507	FOXA3_FOXC2	ENST00000226730.4|IL2|ENSG00000109471.4|interleukin 2
hg19_v2_chr7_-_81399411_81399432	0.26964	FOXA3_FOXC2	ENST00000423064.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr2_+_105050794_105050854	0.267226	FOXA3_FOXC2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr7_-_22259845_22259864	0.263794	FOXA3_FOXC2	ENST00000420196.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr6_+_21666633_21666681	0.260238	FOXA3_FOXC2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr5_+_95998746_95998764	0.255139	FOXA3_FOXC2	ENST00000508608.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr16_-_48281305_48281419	0.252164	FOXA3_FOXC2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr11_+_119205222_119205247	0.250318	FOXA3_FOXC2	ENST00000311413.4|RNF26|ENSG00000173456.4|ring finger protein 26
hg19_v2_chr11_-_116708302_116708347	0.249707	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr5_+_140529630_140529683	0.248506	FOXA3_FOXC2	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr7_-_141673573_141673573	0.247369	FOXA3_FOXC2	ENST00000547270.1|TAS2R38|ENSG00000257138.1|taste receptor, type 2, member 38
hg19_v2_chr4_+_89206076_89206103	0.243798	FOXA3_FOXC2	ENST00000500009.2|RP11-10L7.1|ENSG00000246375.2|RP11-10L7.1
hg19_v2_chr17_-_39684550_39684567	0.241602	FOXA3_FOXC2	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr1_+_86934526_86934578	0.241554	FOXA3_FOXC2	ENST00000394711.1|CLCA1|ENSG00000016490.11|chloride channel accessory 1
hg19_v2_chr15_+_69857515_69857531	0.241522	FOXA3_FOXC2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr3_+_114012819_114012833	0.239969	FOXA3_FOXC2	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr7_+_134430212_134430237	0.234638	FOXA3_FOXC2	ENST00000436461.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr11_-_66112555_66112601	0.231466	FOXA3_FOXC2	ENST00000425825.2|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1 	ENST00000359957.3|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1
hg19_v2_chr12_-_18243119_18243133	0.227219	FOXA3_FOXC2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr4_-_174256276_174256303	0.224018	FOXA3_FOXC2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr5_+_161494770_161494787	0.223501	FOXA3_FOXC2	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr20_+_9049682_9049710	0.221051	FOXA3_FOXC2	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr2_-_180427304_180427323	0.216996	FOXA3_FOXC2	ENST00000336917.5|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr15_+_71185148_71185214	0.216045	FOXA3_FOXC2	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr18_+_61575200_61575230	0.215628	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr5_-_59481406_59481425	0.214773	FOXA3_FOXC2	ENST00000546160.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr2_-_172290482_172290596	0.210781	FOXA3_FOXC2	ENST00000442541.1|METTL8|ENSG00000123600.14|methyltransferase like 8 	ENST00000392599.2|METTL8|ENSG00000123600.14|methyltransferase like 8 	ENST00000375258.4|METTL8|ENSG00000123600.14|methyltransferase like 8
hg19_v2_chr13_-_86373536_86373623	0.207988	FOXA3_FOXC2	ENST00000400286.2|SLITRK6|ENSG00000184564.8|SLIT and NTRK-like family, member 6
hg19_v2_chr6_+_44310421_44310486	0.20594	FOXA3_FOXC2	ENST00000288390.2|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
hg19_v2_chr10_-_31288398_31288455	0.204963	FOXA3_FOXC2	ENST00000538351.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr3_-_107941230_107941417	0.204363	FOXA3_FOXC2	ENST00000264538.3|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr6_+_44310376_44310413	0.202254	FOXA3_FOXC2	ENST00000515220.1|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1 	ENST00000323108.8|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
hg19_v2_chr1_-_43855444_43855478	0.201647	FOXA3_FOXC2	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr5_+_140710061_140710252	0.19612	FOXA3_FOXC2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr20_-_1974692_1974732	0.195906	FOXA3_FOXC2	ENST00000217305.2|PDYN|ENSG00000101327.4|prodynorphin 	ENST00000539905.1|PDYN|ENSG00000101327.4|prodynorphin
hg19_v2_chr11_-_72070206_72070250	0.194845	FOXA3_FOXC2	ENST00000544382.1|CLPB|ENSG00000162129.8|ClpB caseinolytic peptidase B homolog (E. coli)
hg19_v2_chr15_+_58430368_58430401	0.193063	FOXA3_FOXC2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr2_-_175260368_175260450	0.192549	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr14_-_70263979_70264009	0.192243	FOXA3_FOXC2	ENST00000216540.4|SLC10A1|ENSG00000100652.4|solute carrier family 10 (sodium/bile acid cotransporter), member 1
hg19_v2_chr1_+_172389821_172389833	0.192074	FOXA3_FOXC2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr7_-_107443652_107443675	0.191495	FOXA3_FOXC2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr1_-_167522982_167523017	0.19066	FOXA3_FOXC2	ENST00000370509.4|CREG1|ENSG00000143162.7|cellular repressor of E1A-stimulated genes 1
hg19_v2_chr18_+_21033239_21033302	0.190526	FOXA3_FOXC2	ENST00000581585.1|RIOK3|ENSG00000101782.10|RIO kinase 3 	ENST00000577501.1|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr12_-_21487829_21487856	0.187	FOXA3_FOXC2	ENST00000445053.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000452078.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000458504.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000422327.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000421294.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2
hg19_v2_chr5_+_161494521_161494557	0.186659	FOXA3_FOXC2	ENST00000356592.3|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr4_-_87028478_87028514	0.185692	FOXA3_FOXC2	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr18_-_3874752_3874767	0.183803	FOXA3_FOXC2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr17_+_56232494_56232494	0.183665	FOXA3_FOXC2	ENST00000268912.5|OR4D1|ENSG00000141194.5|olfactory receptor, family 4, subfamily D, member 1
hg19_v2_chr15_+_58430567_58430589	0.183254	FOXA3_FOXC2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr17_+_79953310_79953319	0.183239	FOXA3_FOXC2	ENST00000582355.2|ASPSCR1|ENSG00000169696.11|alveolar soft part sarcoma chromosome region, candidate 1
hg19_v2_chr7_+_123241908_123241927	0.17924	FOXA3_FOXC2	ENST00000434204.1|ASB15|ENSG00000146809.8|ankyrin repeat and SOCS box containing 15 	ENST00000437535.1|ASB15|ENSG00000146809.8|ankyrin repeat and SOCS box containing 15 	ENST00000451215.1|ASB15|ENSG00000146809.8|ankyrin repeat and SOCS box containing 15
hg19_v2_chr12_-_39734783_39734860	0.178145	FOXA3_FOXC2	ENST00000552961.1|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chr14_-_21562648_21562659	0.17767	FOXA3_FOXC2	ENST00000555270.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr10_-_118032697_118032796	0.177551	FOXA3_FOXC2	ENST00000439649.3|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr6_-_43596899_43596915	0.176513	FOXA3_FOXC2	ENST00000307126.5|GTPBP2|ENSG00000172432.14|GTP binding protein 2 	ENST00000452781.1|GTPBP2|ENSG00000172432.14|GTP binding protein 2
hg19_v2_chr5_-_41213607_41213697	0.176367	FOXA3_FOXC2	ENST00000337836.5|C6|ENSG00000039537.9|complement component 6 	ENST00000433294.1|C6|ENSG00000039537.9|complement component 6
hg19_v2_chr12_-_21927736_21927768	0.176076	FOXA3_FOXC2	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr8_-_95449155_95449188	0.172654	FOXA3_FOXC2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr14_+_23299088_23299258	0.172175	FOXA3_FOXC2	ENST00000355151.5|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397496.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555345.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000432849.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000553711.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556465.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397505.2|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000557221.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000311892.6|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556840.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555536.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52
hg19_v2_chr12_-_53207842_53207907	0.169135	FOXA3_FOXC2	ENST00000458244.2|KRT4|ENSG00000170477.8|keratin 4
hg19_v2_chr3_-_196910721_196910729	0.168861	FOXA3_FOXC2	ENST00000443183.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr17_-_39471947_39471963	0.166897	FOXA3_FOXC2	ENST00000334202.3|KRTAP17-1|ENSG00000186860.3|keratin associated protein 17-1
hg19_v2_chr5_+_40841276_40841312	0.166857	FOXA3_FOXC2	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr6_+_125524785_125524861	0.166091	FOXA3_FOXC2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chrX_+_99839799_99839938	0.165152	FOXA3_FOXC2	ENST00000373031.4|TNMD|ENSG00000000005.5|tenomodulin
hg19_v2_chr10_+_123923105_123923160	0.164498	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr3_+_119316689_119316710	0.162612	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr4_+_15376165_15376178	0.162037	FOXA3_FOXC2	ENST00000382383.3|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000429690.1|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr18_-_3874247_3874262	0.160958	FOXA3_FOXC2	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr7_+_134464376_134464413	0.159468	FOXA3_FOXC2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr14_-_99737565_99737617	0.159297	FOXA3_FOXC2	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr1_+_43855560_43855640	0.158165	FOXA3_FOXC2	ENST00000562955.1|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr5_+_135468516_135468621	0.156399	FOXA3_FOXC2	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr13_+_50589390_50589543	0.155762	FOXA3_FOXC2	ENST00000360473.4|KCNRG|ENSG00000198553.4|potassium channel regulator 	ENST00000312942.1|KCNRG|ENSG00000198553.4|potassium channel regulator
hg19_v2_chr10_-_21435488_21435488	0.154286	FOXA3_FOXC2	ENST00000534331.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000529198.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000377118.4|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113
hg19_v2_chr7_-_121944491_121944705	0.154084	FOXA3_FOXC2	ENST00000331178.4|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000427185.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000442488.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1
hg19_v2_chr20_-_7921090_7921121	0.153806	FOXA3_FOXC2	ENST00000378789.3|HAO1|ENSG00000101323.4|hydroxyacid oxidase (glycolate oxidase) 1
hg19_v2_chr3_+_119316721_119316739	0.153677	FOXA3_FOXC2	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr5_-_115872142_115872154	0.15353	FOXA3_FOXC2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr3_+_171561127_171561306	0.1526	FOXA3_FOXC2	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr1_-_28384598_28384680	0.150297	FOXA3_FOXC2	ENST00000373864.1|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr22_+_46449674_46449774	0.148796	FOXA3_FOXC2	ENST00000381051.2|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr17_-_19290483_19290553	0.147739	FOXA3_FOXC2	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr12_-_76879852_76879888	0.145717	FOXA3_FOXC2	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr10_-_71176623_71176638	0.145196	FOXA3_FOXC2	ENST00000373306.4|TACR2|ENSG00000075073.10|tachykinin receptor 2
hg19_v2_chr7_+_129847688_129847705	0.145012	FOXA3_FOXC2	ENST00000297819.3|SSMEM1|ENSG00000165120.3|serine-rich single-pass membrane protein 1
hg19_v2_chr14_+_52164820_52164841	0.140114	FOXA3_FOXC2	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr17_-_39324424_39324474	0.139808	FOXA3_FOXC2	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chr1_+_152486950_152486978	0.137232	FOXA3_FOXC2	ENST00000368790.3|CRCT1|ENSG00000169509.5|cysteine-rich C-terminal 1
hg19_v2_chr7_+_112063192_112063237	0.137142	FOXA3_FOXC2	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chrX_+_23352133_23352229	0.136719	FOXA3_FOXC2	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr3_+_189349162_189349305	0.136622	FOXA3_FOXC2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr17_-_26695013_26695033	0.136548	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr14_-_99737822_99737861	0.135306	FOXA3_FOXC2	ENST00000345514.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein) 	ENST00000443726.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr3_+_69985734_69985754	0.134559	FOXA3_FOXC2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr10_+_124739911_124739957	0.133215	FOXA3_FOXC2	ENST00000405485.1|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr6_+_31582961_31583096	0.13193	FOXA3_FOXC2	ENST00000376059.3|AIF1|ENSG00000204472.8|allograft inflammatory factor 1 	ENST00000337917.7|AIF1|ENSG00000204472.8|allograft inflammatory factor 1
hg19_v2_chr7_+_28452130_28452154	0.130587	FOXA3_FOXC2	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr18_-_3874271_3874337	0.130196	FOXA3_FOXC2	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr10_-_75676400_75676400	0.128796	FOXA3_FOXC2	ENST00000412307.2|C10orf55|ENSG00000222047.4|chromosome 10 open reading frame 55
hg19_v2_chr1_-_43855479_43855486	0.127038	FOXA3_FOXC2	ENST00000290663.6|MED8|ENSG00000159479.12|mediator complex subunit 8 	ENST00000372457.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr17_-_26694979_26695007	0.126578	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr5_-_24645078_24645096	0.125859	FOXA3_FOXC2	ENST00000264463.4|CDH10|ENSG00000040731.6|cadherin 10, type 2 (T2-cadherin)
hg19_v2_chr4_-_21950356_21950439	0.125192	FOXA3_FOXC2	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr11_-_83984231_83984330	0.124587	FOXA3_FOXC2	ENST00000330014.6|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000537455.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000376106.3|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000418306.2|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000531015.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr1_+_244214577_244214593	0.121185	FOXA3_FOXC2	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr13_+_73629107_73629148	0.120755	FOXA3_FOXC2	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr11_-_124180733_124180733	0.120661	FOXA3_FOXC2	ENST00000357821.2|OR8D1|ENSG00000196341.2|olfactory receptor, family 8, subfamily D, member 1
hg19_v2_chr2_-_208030647_208030689	0.120576	FOXA3_FOXC2	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr14_-_57272366_57272391	0.119931	FOXA3_FOXC2	ENST00000554788.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000554845.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000408990.3|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr13_-_36429763_36429779	0.118109	FOXA3_FOXC2	ENST00000379893.1|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1
hg19_v2_chr4_+_184826418_184826522	0.117697	FOXA3_FOXC2	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr2_+_128175997_128176020	0.11702	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr17_-_29641104_29641130	0.114637	FOXA3_FOXC2	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr17_+_8924837_8924872	0.114314	FOXA3_FOXC2	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr8_-_23261589_23261753	0.113998	FOXA3_FOXC2	ENST00000524168.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000523833.2|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000519243.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000389131.3|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr16_-_86542455_86542500	0.113189	FOXA3_FOXC2	ENST00000595886.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000597578.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000593604.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr6_+_10528560_10528589	0.11097	FOXA3_FOXC2	ENST00000379597.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr7_+_134464414_134464429	0.110465	FOXA3_FOXC2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr3_+_155588375_155588512	0.109699	FOXA3_FOXC2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr4_+_15341442_15341589	0.109569	FOXA3_FOXC2	ENST00000397700.2|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000295297.4|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr17_+_7487146_7487211	0.108195	FOXA3_FOXC2	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr16_+_84801852_84801877	0.107516	FOXA3_FOXC2	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr14_+_58711539_58711627	0.107494	FOXA3_FOXC2	ENST00000216455.4|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000412908.2|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000557508.1|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3
hg19_v2_chr21_-_32931290_32931341	0.107048	FOXA3_FOXC2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr20_-_55841398_55841458	0.106086	FOXA3_FOXC2	ENST00000395864.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr10_+_124739964_124739994	0.104688	FOXA3_FOXC2	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr5_+_60933634_60933637	0.104079	FOXA3_FOXC2	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr14_+_105267250_105267250	0.103651	FOXA3_FOXC2	ENST00000342537.7|ZBTB42|ENSG00000179627.9|zinc finger and BTB domain containing 42
hg19_v2_chr1_-_150669500_150669602	0.103448	FOXA3_FOXC2	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr2_+_175260514_175260536	0.101259	FOXA3_FOXC2	ENST00000424069.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000427038.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr6_-_25830785_25830844	0.0999969	FOXA3_FOXC2	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr21_-_36259445_36259519	0.0999676	FOXA3_FOXC2	ENST00000399240.1|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr6_-_168479839_168479904	0.0997709	FOXA3_FOXC2	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr12_+_93096759_93096804	0.0995075	FOXA3_FOXC2	ENST00000544406.2|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr4_+_165675269_165675289	0.0992977	FOXA3_FOXC2	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr2_+_169659121_169659157	0.0989366	FOXA3_FOXC2	ENST00000397206.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000397209.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000421711.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr15_+_28624878_28624878	0.0988746	FOXA3_FOXC2	ENST00000450328.2|GOLGA8F|ENSG00000153684.10|golgin A8 family, member F
hg19_v2_chr8_+_21777159_21777221	0.0969725	FOXA3_FOXC2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr2_-_21266935_21266951	0.0947487	FOXA3_FOXC2	ENST00000233242.1|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr5_-_169725231_169725264	0.0941533	FOXA3_FOXC2	ENST00000046794.5|LCP2|ENSG00000043462.7|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v2_chr2_+_166150541_166150594	0.0929268	FOXA3_FOXC2	ENST00000283256.6|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr1_+_114471809_114471855	0.0927385	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr20_+_44035200_44035288	0.0922516	FOXA3_FOXC2	ENST00000372717.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENST00000360981.4|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr12_+_120740119_120740124	0.0919483	FOXA3_FOXC2	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr8_+_92261516_92261555	0.090731	FOXA3_FOXC2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr14_-_38064198_38064239	0.0901604	FOXA3_FOXC2	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr18_-_31803435_31803515	0.0898603	FOXA3_FOXC2	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr7_-_81399329_81399347	0.0881216	FOXA3_FOXC2	ENST00000453411.1|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor) 	ENST00000444829.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr4_+_86396265_86396276	0.088084	FOXA3_FOXC2	ENST00000395184.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr10_-_73848086_73848099	0.0877456	FOXA3_FOXC2	ENST00000536168.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr20_+_44035847_44035879	0.0867848	FOXA3_FOXC2	ENST00000372712.2|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr14_+_51706886_51707006	0.0867409	FOXA3_FOXC2	ENST00000457354.2|TMX1|ENSG00000139921.8|thioredoxin-related transmembrane protein 1
hg19_v2_chr15_-_40600111_40600166	0.0864814	FOXA3_FOXC2	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr14_+_20811766_20811801	0.0849348	FOXA3_FOXC2	ENST00000250416.5|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2 	ENST00000527915.1|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr6_+_146350622_146350749	0.0846584	FOXA3_FOXC2	ENST00000507907.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr19_+_42806250_42806298	0.0844976	FOXA3_FOXC2	ENST00000598490.1|PRR19|ENSG00000188368.5|proline rich 19 	ENST00000341747.3|PRR19|ENSG00000188368.5|proline rich 19
hg19_v2_chr17_-_6947225_6947253	0.0837278	FOXA3_FOXC2	ENST00000574600.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000308009.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000447225.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11
hg19_v2_chr18_+_21032781_21032795	0.0834291	FOXA3_FOXC2	ENST00000339486.3|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr4_+_165675197_165675216	0.0829542	FOXA3_FOXC2	ENST00000515485.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr22_-_39268308_39268319	0.0822867	FOXA3_FOXC2	ENST00000407418.3|CBX6|ENSG00000183741.7|chromobox homolog 6
hg19_v2_chr1_+_18957500_18957623	0.0820463	FOXA3_FOXC2	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr13_-_99910673_99910682	0.0818266	FOXA3_FOXC2	ENST00000397473.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18 	ENST00000397470.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr6_+_146350267_146350419	0.0803827	FOXA3_FOXC2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr17_-_39041479_39041501	0.0803593	FOXA3_FOXC2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr3_+_148545586_148545609	0.0803543	FOXA3_FOXC2	ENST00000282957.4|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue) 	ENST00000468341.1|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue)
hg19_v2_chr14_-_31926623_31926656	0.0797218	FOXA3_FOXC2	ENST00000356180.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr15_+_69854027_69854062	0.0795318	FOXA3_FOXC2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr7_+_106505696_106505798	0.0774968	FOXA3_FOXC2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr9_-_37034028_37034157	0.0773148	FOXA3_FOXC2	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr4_-_89205879_89205921	0.0769718	FOXA3_FOXC2	ENST00000608933.1|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K 	ENST00000315194.4|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K 	ENST00000514204.1|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K
hg19_v2_chr19_-_15443318_15443373	0.0766378	FOXA3_FOXC2	ENST00000360016.5|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr7_+_73242490_73242532	0.0764804	FOXA3_FOXC2	ENST00000431918.1|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr19_-_10679644_10679661	0.076386	FOXA3_FOXC2	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr1_+_154540246_154540260	0.0758833	FOXA3_FOXC2	ENST00000368476.3|CHRNB2|ENSG00000160716.4|cholinergic receptor, nicotinic, beta 2 (neuronal)
hg19_v2_chr19_-_10679697_10679735	0.0754143	FOXA3_FOXC2	ENST00000335766.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr1_-_246729544_246729626	0.0733182	FOXA3_FOXC2	ENST00000544618.1|TFB2M|ENSG00000162851.6|transcription factor B2, mitochondrial 	ENST00000366514.4|TFB2M|ENSG00000162851.6|transcription factor B2, mitochondrial
hg19_v2_chr1_+_18958008_18958023	0.0732399	FOXA3_FOXC2	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr4_-_153303658_153303669	0.0732323	FOXA3_FOXC2	ENST00000296555.5|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr12_+_93096619_93096750	0.0725499	FOXA3_FOXC2	ENST00000397833.3|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr19_-_46088068_46088100	0.072386	FOXA3_FOXC2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr14_-_36988882_36988898	0.0718849	FOXA3_FOXC2	ENST00000498187.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr20_+_31870927_31870969	0.071706	FOXA3_FOXC2	ENST00000253354.1|BPIFB1|ENSG00000125999.6|BPI fold containing family B, member 1
hg19_v2_chr2_+_179318295_179318295	0.0715739	FOXA3_FOXC2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr7_-_25268104_25268106	0.0711945	FOXA3_FOXC2	ENST00000222674.2|NPVF|ENSG00000105954.2|neuropeptide VF precursor
hg19_v2_chr4_-_71532339_71532377	0.0700206	FOXA3_FOXC2	ENST00000254801.4|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr17_+_79213039_79213106	0.0698973	FOXA3_FOXC2	ENST00000431388.2|C17orf89|ENSG00000224877.3|chromosome 17 open reading frame 89
hg19_v2_chr14_+_20811722_20811741	0.0693343	FOXA3_FOXC2	ENST00000429687.3|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr16_-_3350614_3350614	0.069101	FOXA3_FOXC2	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr3_+_35721182_35721277	0.0689426	FOXA3_FOXC2	ENST00000413378.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000417925.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr20_-_55841662_55841736	0.0684375	FOXA3_FOXC2	ENST00000395863.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7 	ENST00000450594.2|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr2_-_182545603_182545603	0.0682184	FOXA3_FOXC2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr2_-_145275211_145275220	0.0678016	FOXA3_FOXC2	ENST00000462355.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr21_-_43786634_43786703	0.0661104	FOXA3_FOXC2	ENST00000291527.2|TFF1|ENSG00000160182.2|trefoil factor 1
hg19_v2_chr3_+_35721106_35721127	0.0656725	FOXA3_FOXC2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr7_+_106505912_106505931	0.0651258	FOXA3_FOXC2	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chrX_+_90689810_90689826	0.0648305	FOXA3_FOXC2	ENST00000312600.3|PABPC5|ENSG00000174740.7|poly(A) binding protein, cytoplasmic 5
hg19_v2_chrX_+_65382433_65382486	0.0647719	FOXA3_FOXC2	ENST00000374727.3|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr2_-_105030466_105030489	0.0647711	FOXA3_FOXC2	ENST00000449772.1|AC068535.3|ENSG00000225765.1|AC068535.3
hg19_v2_chr10_-_81708854_81708867	0.0640296	FOXA3_FOXC2	ENST00000372292.3|SFTPD|ENSG00000133661.11|surfactant protein D
hg19_v2_chr8_+_55528627_55528631	0.0620428	FOXA3_FOXC2	ENST00000220676.1|RP1|ENSG00000104237.6|retinitis pigmentosa 1 (autosomal dominant)
hg19_v2_chr11_-_46615498_46615675	0.0613602	FOXA3_FOXC2	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr4_+_86396321_86396392	0.0611208	FOXA3_FOXC2	ENST00000503995.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr1_+_104293028_104293028	0.0610148	FOXA3_FOXC2	ENST00000370079.3|AMY1C|ENSG00000187733.6|amylase, alpha 1C (salivary)
hg19_v2_chr6_+_52051171_52051185	0.0604993	FOXA3_FOXC2	ENST00000340057.1|IL17A|ENSG00000112115.5|interleukin 17A
hg19_v2_chr6_-_24666819_24666974	0.0602568	FOXA3_FOXC2	ENST00000341060.3|TDP2|ENSG00000111802.9|tyrosyl-DNA phosphodiesterase 2
hg19_v2_chr14_+_74034310_74034345	0.0601589	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr1_+_43855545_43855557	0.0600701	FOXA3_FOXC2	ENST00000372450.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse) 	ENST00000310739.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr1_+_12806141_12806199	0.0596539	FOXA3_FOXC2	ENST00000288048.5|C1orf158|ENSG00000157330.5|chromosome 1 open reading frame 158
hg19_v2_chrX_+_135730297_135730352	0.058363	FOXA3_FOXC2	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr16_+_73420942_73420962	0.0583557	FOXA3_FOXC2	ENST00000554640.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000562661.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000561875.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1
hg19_v2_chr1_-_150669604_150669643	0.0580275	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr13_+_52598827_52598827	0.0576887	FOXA3_FOXC2	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr5_-_156772729_156772774	0.0572726	FOXA3_FOXC2	ENST00000312349.4|FNDC9|ENSG00000172568.4|fibronectin type III domain containing 9
hg19_v2_chr4_+_184365744_184365797	0.0572368	FOXA3_FOXC2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr12_-_11139511_11139511	0.0572026	FOXA3_FOXC2	ENST00000506868.1|TAS2R50|ENSG00000212126.3|taste receptor, type 2, member 50
hg19_v2_chr2_-_86422523_86422595	0.0568728	FOXA3_FOXC2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr15_+_76016293_76016321	0.0565872	FOXA3_FOXC2	ENST00000332145.2|ODF3L1|ENSG00000182950.2|outer dense fiber of sperm tails 3-like 1
hg19_v2_chr5_+_147258266_147258280	0.0565499	FOXA3_FOXC2	ENST00000296694.4|SCGB3A2|ENSG00000164265.4|secretoglobin, family 3A, member 2
hg19_v2_chr17_-_37764128_37764258	0.0543522	FOXA3_FOXC2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chrX_+_135614293_135614318	0.0538164	FOXA3_FOXC2	ENST00000370634.3|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chrX_+_135730373_135730399	0.0537915	FOXA3_FOXC2	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr2_-_179567206_179567260	0.0535741	FOXA3_FOXC2	ENST00000414766.1|TTN|ENSG00000155657.19|titin
hg19_v2_chr7_+_95115210_95115217	0.0535006	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr17_-_39140549_39140579	0.0530028	FOXA3_FOXC2	ENST00000377755.4|KRT40|ENSG00000204889.6|keratin 40
hg19_v2_chr1_+_73771844_73771922	0.0527813	FOXA3_FOXC2	ENST00000440762.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000444827.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000415686.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000411903.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1
hg19_v2_chr3_+_141106643_141106681	0.0525666	FOXA3_FOXC2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr4_-_88450244_88450287	0.0520071	FOXA3_FOXC2	ENST00000503414.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr14_-_101036119_101036131	0.0508318	FOXA3_FOXC2	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr1_+_114471972_114472000	0.050402	FOXA3_FOXC2	ENST00000369559.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369554.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr12_-_7596735_7596781	0.0492705	FOXA3_FOXC2	ENST00000416109.2|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000396630.1|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000313599.3|CD163L1|ENSG00000177675.4|CD163 molecule-like 1
hg19_v2_chr4_+_74269956_74270025	0.0487124	FOXA3_FOXC2	ENST00000295897.4|ALB|ENSG00000163631.12|albumin 	ENST00000415165.2|ALB|ENSG00000163631.12|albumin 	ENST00000503124.1|ALB|ENSG00000163631.12|albumin 	ENST00000509063.1|ALB|ENSG00000163631.12|albumin 	ENST00000401494.3|ALB|ENSG00000163631.12|albumin
hg19_v2_chr21_-_31588338_31588357	0.0485693	FOXA3_FOXC2	ENST00000286809.1|CLDN8|ENSG00000156284.4|claudin 8
hg19_v2_chr7_-_81399438_81399514	0.0457835	FOXA3_FOXC2	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr4_+_88720698_88720733	0.0455795	FOXA3_FOXC2	ENST00000226284.5|IBSP|ENSG00000029559.5|integrin-binding sialoprotein
hg19_v2_chr8_+_19171128_19171182	0.0455257	FOXA3_FOXC2	ENST00000265807.3|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr6_+_146348782_146348809	0.0451456	FOXA3_FOXC2	ENST00000361719.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000392299.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr1_-_178840157_178840187	0.045047	FOXA3_FOXC2	ENST00000367629.1|ANGPTL1|ENSG00000116194.8|angiopoietin-like 1 	ENST00000234816.2|ANGPTL1|ENSG00000116194.8|angiopoietin-like 1
hg19_v2_chr2_+_145425534_145425557	0.0448206	FOXA3_FOXC2	ENST00000432608.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597655.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000598659.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000600679.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000601277.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000451027.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000445791.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596540.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596230.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000594471.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000598248.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597469.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000431734.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000595686.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr8_+_75736761_75736777	0.0442322	FOXA3_FOXC2	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr19_-_50380536_50380618	0.0440091	FOXA3_FOXC2	ENST00000391832.3|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000391834.2|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000344175.5|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich)
hg19_v2_chr1_+_159141397_159141549	0.0438739	FOXA3_FOXC2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr6_-_13621126_13621126	0.0434141	FOXA3_FOXC2	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr20_+_31619454_31619454	0.043206	FOXA3_FOXC2	ENST00000349552.1|BPIFB6|ENSG00000167104.7|BPI fold containing family B, member 6
hg19_v2_chr4_+_148653206_148653219	0.042655	FOXA3_FOXC2	ENST00000336498.3|ARHGAP10|ENSG00000071205.7|Rho GTPase activating protein 10
hg19_v2_chr14_-_31926701_31926734	0.0410061	FOXA3_FOXC2	ENST00000310850.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr12_-_122018346_122018389	0.0409767	FOXA3_FOXC2	ENST00000377069.4|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr12_+_40787194_40787197	0.040824	FOXA3_FOXC2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr5_+_74807581_74807724	0.0403139	FOXA3_FOXC2	ENST00000241436.4|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa 	ENST00000352007.5|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr4_-_11431389_11431389	0.0401089	FOXA3_FOXC2	ENST00000002596.5|HS3ST1|ENSG00000002587.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
hg19_v2_chr12_+_21525818_21525862	0.0396811	FOXA3_FOXC2	ENST00000240652.3|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000542023.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000537593.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide
hg19_v2_chr21_-_31588365_31588398	0.0383304	FOXA3_FOXC2	ENST00000399899.1|CLDN8|ENSG00000156284.4|claudin 8
hg19_v2_chr20_+_43935474_43935491	0.0377691	FOXA3_FOXC2	ENST00000372743.1|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like 	ENST00000372741.3|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like 	ENST00000343694.3|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like
hg19_v2_chr4_+_146403912_146403972	0.0376819	FOXA3_FOXC2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr13_-_45775162_45775191	0.0372803	FOXA3_FOXC2	ENST00000405872.1|KCTD4|ENSG00000180332.5|potassium channel tetramerization domain containing 4
hg19_v2_chr15_-_66797172_66797221	0.0370267	FOXA3_FOXC2	ENST00000569438.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000569696.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000307961.6|RPL4|ENSG00000174444.10|ribosomal protein L4
hg19_v2_chr12_-_102872317_102872429	0.0357507	FOXA3_FOXC2	ENST00000424202.2|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C)
hg19_v2_chrX_+_65382381_65382392	0.0353527	FOXA3_FOXC2	ENST00000519389.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr5_-_36242119_36242381	0.035027	FOXA3_FOXC2	ENST00000511088.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000282512.3|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000506945.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr6_+_158733692_158733692	0.0340523	FOXA3_FOXC2	ENST00000367094.2|TULP4|ENSG00000130338.8|tubby like protein 4 	ENST00000367097.3|TULP4|ENSG00000130338.8|tubby like protein 4
hg19_v2_chr19_+_782755_782833	0.0337776	FOXA3_FOXC2	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr6_+_101846664_101846702	0.0337561	FOXA3_FOXC2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr6_+_146348810_146348918	0.0335526	FOXA3_FOXC2	ENST00000492807.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr16_+_67381263_67381284	0.031943	FOXA3_FOXC2	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr7_+_129906660_129906667	0.0307721	FOXA3_FOXC2	ENST00000222481.4|CPA2|ENSG00000158516.7|carboxypeptidase A2 (pancreatic)
hg19_v2_chr16_+_67381289_67381306	0.0296745	FOXA3_FOXC2	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr5_+_29143603_29143622	0.0294463	FOXA3_FOXC2	ENST00000602470.1|CTD-2118P12.1|ENSG00000259786.2|CTD-2118P12.1	ENST00000602801.1|CTD-2118P12.1|ENSG00000259786.2|CTD-2118P12.1
hg19_v2_chr11_-_110561721_110561721	0.0293391	FOXA3_FOXC2	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr17_+_7476136_7476160	0.0285133	FOXA3_FOXC2	ENST00000582169.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578754.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578495.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000293831.8|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000380512.5|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000585024.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000583802.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577269.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000584784.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000582746.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr10_+_80008505_80008616	0.0283191	FOXA3_FOXC2	ENST00000434974.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856 	ENST00000423770.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856 	ENST00000432742.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856
hg19_v2_chr2_-_161056802_161056815	0.0278645	FOXA3_FOXC2	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr1_+_104159999_104160068	0.0271362	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr21_-_15583165_15583170	0.0254082	FOXA3_FOXC2	ENST00000536861.1|LIPI|ENSG00000188992.7|lipase, member I
hg19_v2_chr10_-_118032979_118033132	0.0248305	FOXA3_FOXC2	ENST00000355422.6|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr1_+_214163033_214163073	0.0247635	FOXA3_FOXC2	ENST00000607425.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chrX_+_24167828_24167907	0.0244658	FOXA3_FOXC2	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr2_+_175260451_175260513	0.0242911	FOXA3_FOXC2	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr3_+_132843652_132843709	0.0219339	FOXA3_FOXC2	ENST00000508711.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr3_-_193096600_193096632	0.0219011	FOXA3_FOXC2	ENST00000446087.1|ATP13A5|ENSG00000187527.6|ATPase type 13A5 	ENST00000342358.4|ATP13A5|ENSG00000187527.6|ATPase type 13A5
hg19_v2_chr2_+_169658928_169659113	0.0213093	FOXA3_FOXC2	ENST00000317647.7|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000445023.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr14_-_25479811_25479846	0.0209254	FOXA3_FOXC2	ENST00000550887.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr1_+_24645807_24645819	0.0206431	FOXA3_FOXC2	ENST00000361548.4|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr5_-_98262240_98262240	0.0189025	FOXA3_FOXC2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr5_+_140787600_140787770	0.0183624	FOXA3_FOXC2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr8_+_67579807_67579887	0.017864	FOXA3_FOXC2	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr16_-_15474904_15474904	0.017689	FOXA3_FOXC2	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr12_-_92536433_92536459	0.0164056	FOXA3_FOXC2	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr2_+_28974668_28974729	0.0161314	FOXA3_FOXC2	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chrX_+_150345054_150345125	0.0144664	FOXA3_FOXC2	ENST00000218316.3|GPR50|ENSG00000102195.7|G protein-coupled receptor 50
hg19_v2_chr13_+_95364963_95364978	0.0137962	FOXA3_FOXC2	ENST00000438290.2|SOX21-AS1|ENSG00000227640.2|SOX21 antisense RNA 1 (head to head)
hg19_v2_chr1_+_35225339_35225343	0.0134889	FOXA3_FOXC2	ENST00000339480.1|GJB4|ENSG00000189433.5|gap junction protein, beta 4, 30.3kDa
hg19_v2_chr2_-_227050079_227050093	0.0130264	FOXA3_FOXC2	ENST00000423838.1|AC068138.1|ENSG00000235070.3|AC068138.1
hg19_v2_chr3_-_45957534_45957655	0.0130148	FOXA3_FOXC2	ENST00000536047.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr2_+_68592305_68592405	0.0125948	FOXA3_FOXC2	ENST00000234313.7|PLEK|ENSG00000115956.9|pleckstrin
hg19_v2_chr7_-_81399355_81399373	0.0122543	FOXA3_FOXC2	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr7_+_142829162_142829176	0.0122484	FOXA3_FOXC2	ENST00000291009.3|PIP|ENSG00000159763.3|prolactin-induced protein
hg19_v2_chr20_+_44520009_44520020	0.0119084	FOXA3_FOXC2	ENST00000607482.1|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000372459.2|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr10_-_49482907_49482941	0.0109855	FOXA3_FOXC2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr16_+_69958887_69958927	0.0108848	FOXA3_FOXC2	ENST00000568684.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr15_-_65321943_65321984	0.0105513	FOXA3_FOXC2	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr3_+_137728842_137728952	0.0105248	FOXA3_FOXC2	ENST00000183605.5|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr6_+_54172653_54172764	0.0104239	FOXA3_FOXC2	ENST00000370869.3|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen
hg19_v2_chr5_+_101569696_101569696	0.00984825	FOXA3_FOXC2	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr14_+_37126765_37126799	0.00957366	FOXA3_FOXC2	ENST00000402703.2|PAX9|ENSG00000198807.8|paired box 9
hg19_v2_chr6_-_49755019_49755053	0.00940735	FOXA3_FOXC2	ENST00000304801.3|PGK2|ENSG00000170950.3|phosphoglycerate kinase 2
hg19_v2_chr20_+_44519948_44519986	0.00872472	FOXA3_FOXC2	ENST00000354880.5|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000191018.5|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chrX_-_47863348_47863412	0.00866393	FOXA3_FOXC2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr4_-_186456652_186456668	0.00845722	FOXA3_FOXC2	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chrX_-_55020511_55020626	0.00810806	FOXA3_FOXC2	ENST00000375006.3|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 	ENST00000374992.2|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr6_-_117747015_117747048	0.00803532	FOXA3_FOXC2	ENST00000368508.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase 	ENST00000368507.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase
hg19_v2_chr1_-_223308098_223308225	0.00749554	FOXA3_FOXC2	ENST00000342210.6|TLR5|ENSG00000187554.7|toll-like receptor 5
hg19_v2_chr4_-_116034979_116035046	0.00726314	FOXA3_FOXC2	ENST00000264363.2|NDST4|ENSG00000138653.5|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
hg19_v2_chr3_+_137717571_137717591	0.00719592	FOXA3_FOXC2	ENST00000343735.4|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chrX_+_24167746_24167811	0.00627837	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr1_+_24646002_24646056	0.00564415	FOXA3_FOXC2	ENST00000356046.2|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr2_-_32490859_32490923	0.00429135	FOXA3_FOXC2	ENST00000404025.2|NLRC4|ENSG00000091106.14|NLR family, CARD domain containing 4
hg19_v2_chr4_-_103266626_103266647	0.00414503	FOXA3_FOXC2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr12_+_72080253_72080293	0.00281489	FOXA3_FOXC2	ENST00000549735.1|TMEM19|ENSG00000139291.9|transmembrane protein 19
hg19_v2_chr5_+_179921430_179921461	0.00268321	FOXA3_FOXC2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr14_+_23654525_23654545	0.00217301	FOXA3_FOXC2	ENST00000399910.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164 	ENST00000492621.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164
hg19_v2_chr21_-_43771226_43771242	0.00156378	FOXA3_FOXC2	ENST00000291526.4|TFF2|ENSG00000160181.4|trefoil factor 2
hg19_v2_chr7_+_142880512_142880512	0.00121509	FOXA3_FOXC2	ENST00000446620.1|TAS2R39|ENSG00000236398.2|taste receptor, type 2, member 39
hg19_v2_chr11_-_115375107_115375283	0.000625501	FOXA3_FOXC2	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr2_-_225434538_225434545	0.000235911	FOXA3_FOXC2	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
