hg19_v2_chr15_+_67430339_67430366	5.96847	GLI3	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr9_-_123676827_123676865	5.50077	GLI3	ENST00000546084.1|TRAF1|ENSG00000056558.6|TNF receptor-associated factor 1
hg19_v2_chr1_+_183155373_183155423	5.21876	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr3_-_127542051_127542098	4.50199	GLI3	ENST00000398104.1|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr10_-_49701686_49701697	4.38238	GLI3	ENST00000417247.2|ARHGAP22|ENSG00000128805.10|Rho GTPase activating protein 22
hg19_v2_chr7_-_47579188_47579231	4.33434	GLI3	ENST00000398879.1|TNS3|ENSG00000136205.12|tensin 3 	ENST00000355730.3|TNS3|ENSG00000136205.12|tensin 3 	ENST00000442536.2|TNS3|ENSG00000136205.12|tensin 3 	ENST00000458317.2|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr3_-_127542021_127542050	4.31155	GLI3	ENST00000434178.2|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr1_-_205782304_205782332	4.30312	GLI3	ENST00000367137.3|SLC41A1|ENSG00000133065.6|solute carrier family 41 (magnesium transporter), member 1
hg19_v2_chr5_+_113769205_113769227	3.95237	GLI3	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr19_+_18284477_18284667	3.93248	GLI3	ENST00000407280.3|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr12_-_57522813_57522883	3.88837	GLI3	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr17_+_41158742_41158822	3.8227	GLI3	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr5_-_150460914_150460997	3.75264	GLI3	ENST00000389378.2|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr16_-_11681023_11681145	3.53752	GLI3	ENST00000570904.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574701.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr19_-_10464570_10464754	3.32784	GLI3	ENST00000529739.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr12_+_113354341_113354422	3.17539	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr4_-_177713788_177713881	3.13831	GLI3	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr5_-_150460539_150460640	3.00483	GLI3	ENST00000520931.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000520695.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000521591.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000518977.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr9_-_95896550_95896570	2.90372	GLI3	ENST00000375446.4|NINJ1|ENSG00000131669.5|ninjurin 1
hg19_v2_chr7_-_108096822_108096889	2.84614	GLI3	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr19_+_676385_676403	2.79619	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr8_+_31497271_31497285	2.70702	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr19_+_44084696_44084790	2.54748	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr16_-_11681316_11681419	2.45841	GLI3	ENST00000571688.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr1_-_47407097_47407107	2.36641	GLI3	ENST00000457840.2|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr7_-_108096765_108096784	2.29629	GLI3	ENST00000379024.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000351718.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr16_+_57653989_57654022	2.14622	GLI3	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr16_+_57653854_57653968	2.09863	GLI3	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr9_+_72658490_72658502	2.04213	GLI3	ENST00000377182.4|MAMDC2|ENSG00000165072.9|MAM domain containing 2
hg19_v2_chr20_+_62327996_62328021	2.01692	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr1_+_36554470_36554519	1.89444	GLI3	ENST00000373178.4|ADPRHL2|ENSG00000116863.10|ADP-ribosylhydrolase like 2
hg19_v2_chr3_-_107809816_107809885	1.73775	GLI3	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr10_-_105615164_105615323	1.73396	GLI3	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr10_-_90712520_90712536	1.71961	GLI3	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr7_-_994302_994333	1.6743	GLI3	ENST00000265846.5|ADAP1|ENSG00000105963.9|ArfGAP with dual PH domains 1
hg19_v2_chr8_-_90996459_90996632	1.67222	GLI3	ENST00000517337.1|NBN|ENSG00000104320.9|nibrin 	ENST00000409330.1|NBN|ENSG00000104320.9|nibrin
hg19_v2_chr9_+_109694914_109694927	1.67105	GLI3	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr15_+_89164520_89164559	1.66245	GLI3	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr14_+_103592636_103592664	1.65251	GLI3	ENST00000333007.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr5_-_95297678_95297775	1.64914	GLI3	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr17_+_73750699_73750793	1.64862	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr8_-_90996837_90996944	1.64815	GLI3	ENST00000519426.1|NBN|ENSG00000104320.9|nibrin 	ENST00000265433.3|NBN|ENSG00000104320.9|nibrin
hg19_v2_chr16_+_3115611_3115813	1.64072	GLI3	ENST00000530890.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000444393.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000533097.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000008180.9|IL32|ENSG00000008517.12|interleukin 32 	ENST00000396890.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525228.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548652.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525377.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000530538.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000549213.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552936.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548476.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552664.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552356.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000551513.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000382213.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548246.1|IL32|ENSG00000008517.12|interleukin 32
hg19_v2_chr19_-_35981358_35981433	1.62923	GLI3	ENST00000484218.2|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein 	ENST00000338897.3|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein
hg19_v2_chr19_+_35521616_35521647	1.57635	GLI3	ENST00000595652.1|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr5_-_169816638_169816681	1.57212	GLI3	ENST00000521859.1|KCNMB1|ENSG00000145936.4|potassium large conductance calcium-activated channel, subfamily M, beta member 1 	ENST00000274629.4|KCNMB1|ENSG00000145936.4|potassium large conductance calcium-activated channel, subfamily M, beta member 1
hg19_v2_chr20_-_62199427_62199427	1.56266	GLI3	ENST00000427522.2|HELZ2|ENSG00000130589.12|helicase with zinc finger 2, transcriptional coactivator
hg19_v2_chr22_-_50964849_50964903	1.55947	GLI3	ENST00000543927.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein 	ENST00000423348.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein
hg19_v2_chr5_-_95297534_95297563	1.55685	GLI3	ENST00000513343.1|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2 	ENST00000431061.2|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr11_-_64646086_64646191	1.52136	GLI3	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr1_-_212873267_212873332	1.50321	GLI3	ENST00000243440.1|BATF3|ENSG00000123685.4|basic leucine zipper transcription factor, ATF-like 3
hg19_v2_chr17_+_77030267_77030391	1.49422	GLI3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr22_-_18256742_18256782	1.4928	GLI3	ENST00000317361.7|BID|ENSG00000015475.14|BH3 interacting domain death agonist
hg19_v2_chr16_-_84538218_84538364	1.4902	GLI3	ENST00000562447.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000565765.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000535580.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000343629.6|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1
hg19_v2_chr12_-_89919220_89919392	1.45143	GLI3	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr1_+_11724167_11724197	1.44344	GLI3	ENST00000376753.4|FBXO6|ENSG00000116663.6|F-box protein 6
hg19_v2_chr12_-_57504069_57504123	1.43485	GLI3	ENST00000543873.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000554663.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000557635.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr12_-_323689_323719	1.43464	GLI3	ENST00000428720.1|SLC6A12|ENSG00000111181.8|solute carrier family 6 (neurotransmitter transporter), member 12
hg19_v2_chr6_-_17987694_17987913	1.42905	GLI3	ENST00000378814.5|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378843.2|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378826.2|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378816.5|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000259711.6|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000502704.1|KIF13A|ENSG00000137177.14|kinesin family member 13A
hg19_v2_chr7_-_97501411_97501431	1.41493	GLI3	ENST00000437628.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr7_-_97501706_97501727	1.41486	GLI3	ENST00000455086.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing) 	ENST00000453600.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr7_-_97501432_97501451	1.41404	GLI3	ENST00000394309.3|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr1_+_28206150_28206242	1.40546	GLI3	ENST00000456990.1|THEMIS2|ENSG00000130775.11|thymocyte selection associated family member 2
hg19_v2_chr22_+_18834324_18834324	1.36998	GLI3	ENST00000342005.4|AC008132.13|ENSG00000161103.7|Uncharacterized protein
hg19_v2_chr1_-_45308616_45308735	1.35404	GLI3	ENST00000447098.2|PTCH2|ENSG00000117425.9|patched 2 	ENST00000372192.3|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr1_-_156722015_156722034	1.31713	GLI3	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr17_-_79620721_79620767	1.30737	GLI3	ENST00000571004.1|PDE6G|ENSG00000185527.7|phosphodiesterase 6G, cGMP-specific, rod, gamma
hg19_v2_chr2_+_102928009_102928033	1.28716	GLI3	ENST00000404917.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000447231.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr16_+_30212050_30212050	1.28527	GLI3	ENST00000563322.1|SULT1A3|ENSG00000261052.1|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3
hg19_v2_chr15_+_74287035_74287117	1.27303	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr4_+_72053017_72053044	1.27217	GLI3	ENST00000351898.6|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr11_-_3078616_3078667	1.25478	GLI3	ENST00000401769.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000278224.9|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000397114.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000380525.4|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase
hg19_v2_chr19_+_782755_782833	1.2502	GLI3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr1_-_47082495_47082563	1.24151	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chr11_-_128457446_128457461	1.23906	GLI3	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr12_-_50101165_50101259	1.23147	GLI3	ENST00000352151.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000335154.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000293590.5|FMNL3|ENSG00000161791.9|formin-like 3
hg19_v2_chr5_+_52083730_52083821	1.23144	GLI3	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr5_+_6583380_6583421	1.21916	GLI3	ENST00000507582.1|LINC01018|ENSG00000250056.1|long intergenic non-protein coding RNA 1018
hg19_v2_chr22_-_50051151_50051190	1.21805	GLI3	ENST00000400023.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34 	ENST00000444628.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34
hg19_v2_chr3_-_192635943_192635955	1.21776	GLI3	ENST00000392452.2|MB21D2|ENSG00000180611.6|Mab-21 domain containing 2
hg19_v2_chr15_+_74287118_74287144	1.21219	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr10_+_124134201_124134350	1.20228	GLI3	ENST00000368990.3|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368988.1|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368989.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000463663.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
hg19_v2_chr17_+_32582293_32582312	1.1869	GLI3	ENST00000580907.1|CCL2|ENSG00000108691.5|chemokine (C-C motif) ligand 2 	ENST00000225831.4|CCL2|ENSG00000108691.5|chemokine (C-C motif) ligand 2
hg19_v2_chr5_-_58571935_58571951	1.18637	GLI3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr20_+_814349_814375	1.18485	GLI3	ENST00000381941.3|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr16_+_56598961_56598990	1.1847	GLI3	ENST00000219162.3|MT4|ENSG00000102891.3|metallothionein 4
hg19_v2_chr8_-_145331153_145331153	1.18135	GLI3	ENST00000377412.4|KM-PA-2|ENSG00000204775.4|KM-PA-2 protein; Uncharacterized protein
hg19_v2_chr14_+_29236269_29236287	1.15876	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr15_-_72523454_72523684	1.14857	GLI3	ENST00000565154.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000565184.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000389093.3|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000449901.2|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000335181.5|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000319622.6|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr4_-_38666430_38666526	1.14291	GLI3	ENST00000436901.1|AC021860.1|ENSG00000196355.2|Uncharacterized protein
hg19_v2_chr6_+_116601265_116601288	1.08663	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr1_+_165864821_165864850	1.0855	GLI3	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr1_-_38273840_38273888	1.08098	GLI3	ENST00000373044.2|YRDC|ENSG00000196449.3|yrdC N(6)-threonylcarbamoyltransferase domain containing
hg19_v2_chr15_+_75498355_75498390	1.08025	GLI3	ENST00000567617.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr15_+_81591757_81591780	1.06465	GLI3	ENST00000558332.1|IL16|ENSG00000172349.12|interleukin 16
hg19_v2_chrX_-_48056199_48056233	1.06323	GLI3	ENST00000311798.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5 	ENST00000347757.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5
hg19_v2_chr14_+_105155925_105155979	1.05797	GLI3	ENST00000330634.7|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000398337.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000392634.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing
hg19_v2_chr4_-_5021164_5021199	1.05072	GLI3	ENST00000506508.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000509419.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000307746.4|CYTL1|ENSG00000170891.6|cytokine-like 1
hg19_v2_chr9_+_126118449_126118539	1.04466	GLI3	ENST00000359999.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila) 	ENST00000373631.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila)
hg19_v2_chrX_-_40506766_40506824	1.03818	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000440784.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000327877.5|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378426.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378418.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38
hg19_v2_chr16_+_31044812_31044931	1.02496	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr3_+_101568349_101568365	1.02026	GLI3	ENST00000326151.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 	ENST00000326172.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
hg19_v2_chr17_+_46184911_46184951	1.01623	GLI3	ENST00000580219.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000452859.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000393405.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000439357.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000359238.2|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr11_-_75062829_75062951	1.0044	GLI3	ENST00000393505.4|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr19_+_44085189_44085189	1.00314	GLI3	ENST00000562365.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr11_+_68451943_68451986	1.00085	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr6_-_33548006_33548069	0.997887	GLI3	ENST00000374467.3|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr2_+_201981527_201981560	0.99704	GLI3	ENST00000441224.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr3_-_8686479_8686486	0.993731	GLI3	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr22_+_24990746_24990781	0.990119	GLI3	ENST00000456869.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000411974.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr5_-_146833222_146833261	0.985375	GLI3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr6_-_33547975_33547999	0.980133	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr9_+_132962843_132962872	0.979836	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr1_+_15480197_15480285	0.979744	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr14_+_94577074_94577161	0.978868	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr21_-_18985230_18985265	0.969188	GLI3	ENST00000457956.1|BTG3|ENSG00000154640.10|BTG family, member 3 	ENST00000348354.6|BTG3|ENSG00000154640.10|BTG family, member 3
hg19_v2_chr5_-_180237445_180237462	0.965865	GLI3	ENST00000393340.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chrX_+_152086373_152086414	0.962019	GLI3	ENST00000318529.8|ZNF185|ENSG00000147394.14|zinc finger protein 185 (LIM domain)
hg19_v2_chr16_+_56691606_56691719	0.953009	GLI3	ENST00000334350.6|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr10_+_134000404_134000432	0.936602	GLI3	ENST00000338492.4|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4 	ENST00000368629.1|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4
hg19_v2_chr1_-_153538292_153538342	0.928803	GLI3	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr6_-_31324943_31324965	0.927786	GLI3	ENST00000412585.2|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B 	ENST00000434333.1|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B
hg19_v2_chr11_+_69061594_69061635	0.920089	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr16_+_27325202_27325313	0.918452	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr11_-_75062730_75062775	0.916533	GLI3	ENST00000420843.2|ARRB1|ENSG00000137486.12|arrestin, beta 1 	ENST00000360025.3|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr9_+_109625378_109625458	0.907315	GLI3	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr14_+_24605389_24605446	0.897745	GLI3	ENST00000382708.3|PSME1|ENSG00000092010.10|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) 	ENST00000561435.1|PSME1|ENSG00000092010.10|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
hg19_v2_chr14_+_22984601_22984601	0.897588	GLI3	ENST00000390509.1|TRAJ28|ENSG00000211861.1|T cell receptor alpha joining 28
hg19_v2_chr17_-_39324424_39324474	0.894883	GLI3	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chr16_+_30675654_30675778	0.887547	GLI3	ENST00000287468.5|FBRS|ENSG00000156860.11|fibrosin 	ENST00000395073.2|FBRS|ENSG00000156860.11|fibrosin
hg19_v2_chr4_-_7069760_7069924	0.885725	GLI3	ENST00000264954.4|GRPEL1|ENSG00000109519.8|GrpE-like 1, mitochondrial (E. coli)
hg19_v2_chr11_+_64009072_64009220	0.875062	GLI3	ENST00000535135.1|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa 	ENST00000394540.3|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa
hg19_v2_chr6_-_32784687_32784839	0.868402	GLI3	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr11_-_72432950_72433073	0.864515	GLI3	ENST00000426523.1|ARAP1|ENSG00000186635.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 	ENST00000429686.1|ARAP1|ENSG00000186635.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
hg19_v2_chr8_-_128960591_128960591	0.858112	GLI3	ENST00000539634.1|TMEM75|ENSG00000256655.1|transmembrane protein 75
hg19_v2_chr22_+_39436862_39436924	0.857683	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr22_+_31644388_31644473	0.856539	GLI3	ENST00000333611.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000340552.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2
hg19_v2_chr7_+_44240520_44240652	0.841984	GLI3	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr18_+_21594384_21594539	0.838644	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chr15_+_59063478_59063561	0.834238	GLI3	ENST00000559228.1|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B 	ENST00000450403.2|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B
hg19_v2_chr16_+_84682108_84682218	0.833623	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chr11_-_61646054_61646115	0.828709	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr11_+_61957687_61957689	0.827905	GLI3	ENST00000306238.3|SCGB1D1|ENSG00000168515.3|secretoglobin, family 1D, member 1
hg19_v2_chr19_-_51456198_51456301	0.822921	GLI3	ENST00000594846.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr10_-_135171510_135171544	0.821468	GLI3	ENST00000278025.4|FUOM|ENSG00000148803.7|fucose mutarotase 	ENST00000368552.3|FUOM|ENSG00000148803.7|fucose mutarotase
hg19_v2_chr19_+_489140_489179	0.816571	GLI3	ENST00000587541.1|MADCAM1|ENSG00000099866.10|mucosal vascular addressin cell adhesion molecule 1
hg19_v2_chr16_+_56691838_56691862	0.813186	GLI3	ENST00000394501.2|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr5_+_98109322_98109350	0.811866	GLI3	ENST00000513185.1|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr2_+_131369054_131369054	0.810071	GLI3	ENST00000409602.1|POTEJ|ENSG00000222038.3|POTE ankyrin domain family, member J
hg19_v2_chr11_+_64052692_64052747	0.80332	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr12_-_10766184_10766222	0.79579	GLI3	ENST00000539554.1|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000381881.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000320756.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila)
hg19_v2_chr19_+_7599128_7599150	0.791631	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr7_-_131241361_131241398	0.790546	GLI3	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr17_+_39261584_39261584	0.786156	GLI3	ENST00000391415.1|KRTAP4-9|ENSG00000212722.6|keratin associated protein 4-9
hg19_v2_chr21_+_45725050_45725211	0.786072	GLI3	ENST00000403390.1|PFKL|ENSG00000141959.12|phosphofructokinase, liver
hg19_v2_chr1_+_152881014_152881031	0.783681	GLI3	ENST00000368764.3|IVL|ENSG00000163207.5|involucrin 	ENST00000392667.2|IVL|ENSG00000163207.5|involucrin
hg19_v2_chrX_+_153409678_153409698	0.783268	GLI3	ENST00000369951.4|OPN1LW|ENSG00000102076.5|opsin 1 (cone pigments), long-wave-sensitive
hg19_v2_chr4_+_8582287_8582314	0.78223	GLI3	ENST00000382487.4|GPR78|ENSG00000155269.7|G protein-coupled receptor 78
hg19_v2_chr14_+_52164820_52164841	0.780883	GLI3	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr16_+_84209738_84209748	0.780042	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr10_-_75173785_75173844	0.772094	GLI3	ENST00000535178.1|ANXA7|ENSG00000138279.11|annexin A7 	ENST00000372921.5|ANXA7|ENSG00000138279.11|annexin A7 	ENST00000372919.4|ANXA7|ENSG00000138279.11|annexin A7
hg19_v2_chr17_-_3819751_3819794	0.768771	GLI3	ENST00000225538.3|P2RX1|ENSG00000108405.3|purinergic receptor P2X, ligand-gated ion channel, 1
hg19_v2_chr17_-_55822653_55822673	0.768654	GLI3	ENST00000299415.2|AC007431.1|ENSG00000166329.2|coiled-coil domain containing 182
hg19_v2_chr1_+_15479054_15479073	0.762146	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr1_+_179262905_179262986	0.761655	GLI3	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr20_+_35974532_35974557	0.761279	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chr20_-_50808236_50808264	0.760146	GLI3	ENST00000361387.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr7_-_4923259_4923310	0.758244	GLI3	ENST00000536091.1|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr20_+_62185491_62185539	0.756781	GLI3	ENST00000370097.1|C20orf195|ENSG00000125531.5|chromosome 20 open reading frame 195
hg19_v2_chr16_+_68678739_68678833	0.755558	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr3_-_119278376_119278403	0.755164	GLI3	ENST00000478182.1|CD80|ENSG00000121594.7|CD80 molecule
hg19_v2_chr20_+_48599506_48599536	0.753742	GLI3	ENST00000244050.2|SNAI1|ENSG00000124216.3|snail family zinc finger 1
hg19_v2_chr11_-_65667884_65667895	0.753265	GLI3	ENST00000448083.2|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000531493.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000532401.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1
hg19_v2_chr8_-_82024290_82024310	0.75201	GLI3	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr19_+_7599597_7599642	0.750972	GLI3	ENST00000414982.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000450331.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr10_-_27444143_27444195	0.75084	GLI3	ENST00000477432.1|YME1L1|ENSG00000136758.14|YME1-like 1 ATPase
hg19_v2_chr21_-_36260980_36261011	0.748823	GLI3	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr22_-_18507279_18507364	0.747303	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr12_-_54779511_54779577	0.74666	GLI3	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr11_-_46142615_46142729	0.738777	GLI3	ENST00000529734.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000323180.6|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr7_-_4923315_4923360	0.735236	GLI3	ENST00000399583.3|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr17_+_8339189_8339285	0.735036	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr18_+_56807096_56807175	0.734046	GLI3	ENST00000588875.1|SEC11C|ENSG00000166562.4|SEC11 homolog C (S. cerevisiae)
hg19_v2_chr11_+_2482661_2482675	0.733081	GLI3	ENST00000335475.5|KCNQ1|ENSG00000053918.11|potassium voltage-gated channel, KQT-like subfamily, member 1
hg19_v2_chr19_-_42931567_42931581	0.730533	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr3_-_195538728_195538754	0.72983	GLI3	ENST00000349607.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated 	ENST00000346145.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr17_-_42031300_42031313	0.726304	GLI3	ENST00000592796.1|PYY|ENSG00000131096.6|peptide YY
hg19_v2_chr16_+_70680439_70680482	0.726181	GLI3	ENST00000288098.2|IL34|ENSG00000157368.6|interleukin 34
hg19_v2_chr1_-_153538011_153538030	0.722238	GLI3	ENST00000368707.4|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr8_+_22102611_22102624	0.722078	GLI3	ENST00000306433.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr17_+_4710391_4710500	0.72084	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr1_+_233765353_233765391	0.720003	GLI3	ENST00000366620.1|KCNK1|ENSG00000135750.10|potassium channel, subfamily K, member 1
hg19_v2_chrX_+_153448107_153448107	0.717449	GLI3	ENST00000369935.5|OPN1MW|ENSG00000147380.6|opsin 1 (cone pigments), medium-wave-sensitive
hg19_v2_chr16_-_2059797_2059837	0.71395	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr1_+_204839959_204839996	0.713291	GLI3	ENST00000404076.1|NFASC|ENSG00000163531.11|neurofascin
hg19_v2_chr1_+_45205498_45205554	0.708377	GLI3	ENST00000372218.4|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr16_+_56691911_56691929	0.704561	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr14_+_74058410_74058410	0.703825	GLI3	ENST00000326303.4|ACOT4|ENSG00000177465.4|acyl-CoA thioesterase 4
hg19_v2_chr15_+_90895471_90895572	0.703326	GLI3	ENST00000354377.3|ZNF774|ENSG00000196391.6|zinc finger protein 774 	ENST00000379090.5|ZNF774|ENSG00000196391.6|zinc finger protein 774
hg19_v2_chr12_-_21927736_21927768	0.702742	GLI3	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr18_-_12884150_12884250	0.701492	GLI3	ENST00000591115.1|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000309660.5|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr14_-_61124977_61125037	0.700571	GLI3	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr4_+_77172847_77172897	0.699925	GLI3	ENST00000515604.1|FAM47E|ENSG00000272414.1|uncharacterized protein LOC100631383  	ENST00000539752.1|FAM47E-STBD1|ENSG00000118804.7|FAM47E-STBD1 readthrough 	ENST00000424749.2|FAM47E|ENSG00000189157.9|family with sequence similarity 47, member E
hg19_v2_chr17_-_73851285_73851501	0.699761	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr12_+_69202975_69203013	0.697484	GLI3	ENST00000544561.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000393410.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000299252.4|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000360430.2|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000517852.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000545204.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000393413.3|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000350057.5|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000348801.2|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000478070.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase
hg19_v2_chr17_-_10600818_10600885	0.697461	GLI3	ENST00000577427.1|SCO1|ENSG00000133028.6|SCO1 cytochrome c oxidase assembly protein 	ENST00000255390.5|SCO1|ENSG00000133028.6|SCO1 cytochrome c oxidase assembly protein
hg19_v2_chr17_+_7531281_7531320	0.696641	GLI3	ENST00000575729.1|SHBG|ENSG00000129214.10|sex hormone-binding globulin 	ENST00000340624.5|SHBG|ENSG00000129214.10|sex hormone-binding globulin
hg19_v2_chr16_-_67840442_67840555	0.694746	GLI3	ENST00000536251.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000448631.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000602677.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000411657.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000425512.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000317506.3|RANBP10|ENSG00000141084.6|RAN binding protein 10
hg19_v2_chr8_+_22102626_22102748	0.690508	GLI3	ENST00000519237.1|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 	ENST00000397802.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chrX_-_103268259_103268259	0.690152	GLI3	ENST00000217926.5|H2BFWT|ENSG00000123569.7|H2B histone family, member W, testis-specific
hg19_v2_chr17_+_7210898_7210918	0.689656	GLI3	ENST00000572815.1|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr11_+_117070904_117070971	0.685091	GLI3	ENST00000529792.1|TAGLN|ENSG00000149591.12|transgelin
hg19_v2_chr10_+_105156364_105156448	0.682887	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chr16_+_68679193_68679253	0.682138	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr7_-_92465868_92465922	0.680548	GLI3	ENST00000424848.2|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr20_+_48552908_48552949	0.679164	GLI3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr1_-_1051736_1051754	0.677573	GLI3	ENST00000448924.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000294576.5|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000437760.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000462097.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000475119.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr17_-_39165366_39165381	0.676949	GLI3	ENST00000391588.1|KRTAP3-1|ENSG00000212901.2|keratin associated protein 3-1
hg19_v2_chr15_-_77712477_77712499	0.675725	GLI3	ENST00000560626.2|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr22_-_50970919_50971009	0.675047	GLI3	ENST00000329363.4|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000437588.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr19_+_16338416_16338504	0.674384	GLI3	ENST00000586543.1|AP1M1|ENSG00000072958.4|adaptor-related protein complex 1, mu 1 subunit
hg19_v2_chr5_-_9546180_9546195	0.665195	GLI3	ENST00000382496.5|SEMA5A|ENSG00000112902.7|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
hg19_v2_chr7_-_41742697_41742714	0.664695	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr4_-_185395672_185395734	0.660024	GLI3	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr5_-_180236811_180236880	0.659797	GLI3	ENST00000446023.2|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr20_-_62258394_62258464	0.658471	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr4_+_72052964_72053013	0.657894	GLI3	ENST00000264485.5|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000425175.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr1_+_150122034_150122170	0.657847	GLI3	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr1_+_15479021_15479053	0.65722	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr12_-_322504_322551	0.656423	GLI3	ENST00000424061.2|SLC6A12|ENSG00000111181.8|solute carrier family 6 (neurotransmitter transporter), member 12
hg19_v2_chr15_+_85525205_85525308	0.654859	GLI3	ENST00000394553.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000339708.5|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chr14_-_51297197_51297327	0.653914	GLI3	ENST00000382043.4|NIN|ENSG00000100503.19|ninein (GSK3B interacting protein)
hg19_v2_chr9_-_34458531_34458582	0.653859	GLI3	ENST00000379089.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379087.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379084.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379081.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379080.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000422409.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379078.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000445726.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000297620.4|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A
hg19_v2_chr20_-_1306351_1306367	0.652909	GLI3	ENST00000381812.1|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr9_+_35673853_35673905	0.651687	GLI3	ENST00000378357.4|CA9|ENSG00000107159.8|carbonic anhydrase IX
hg19_v2_chrX_-_48271344_48271344	0.651331	GLI3	ENST00000376884.2|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B 	ENST00000396928.1|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B
hg19_v2_chr14_-_61748550_61748559	0.649163	GLI3	ENST00000555868.1|TMEM30B|ENSG00000182107.5|transmembrane protein 30B
hg19_v2_chr15_+_41913690_41913753	0.644179	GLI3	ENST00000563576.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein
hg19_v2_chr12_+_69202795_69202810	0.6436	GLI3	ENST00000539479.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000393415.3|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000523991.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000543323.1|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase 	ENST00000393416.2|MDM2|ENSG00000135679.17|MDM2 oncogene, E3 ubiquitin protein ligase
hg19_v2_chr1_+_167691185_167691188	0.643411	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr16_+_31885079_31885165	0.643355	GLI3	ENST00000300870.10|ZNF267|ENSG00000185947.10|zinc finger protein 267 	ENST00000394846.3|ZNF267|ENSG00000185947.10|zinc finger protein 267
hg19_v2_chr1_+_36621529_36621585	0.642223	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chrX_-_153775426_153775469	0.637301	GLI3	ENST00000393562.2|G6PD|ENSG00000160211.11|glucose-6-phosphate dehydrogenase
hg19_v2_chr19_+_45147098_45147223	0.636901	GLI3	ENST00000425690.3|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000344956.4|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000403059.4|PVR|ENSG00000073008.10|poliovirus receptor
hg19_v2_chr11_-_104817919_104817919	0.633211	GLI3	ENST00000533252.1|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr15_-_101817616_101817710	0.631985	GLI3	ENST00000526049.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000398226.3|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000537379.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr6_+_125540951_125540991	0.626773	GLI3	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr8_+_120428546_120428642	0.623989	GLI3	ENST00000259526.3|NOV|ENSG00000136999.4|nephroblastoma overexpressed
hg19_v2_chr6_-_109777128_109777203	0.622423	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr17_-_30185971_30186093	0.620641	GLI3	ENST00000378634.2|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr1_+_167691191_167691389	0.620509	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr5_-_6633397_6633445	0.620117	GLI3	ENST00000264670.6|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2 	ENST00000539938.1|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2
hg19_v2_chr1_-_1051455_1051495	0.620105	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr8_+_1922024_1922069	0.618889	GLI3	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr4_-_187476721_187476721	0.617942	GLI3	ENST00000307161.5|MTNR1A|ENSG00000168412.6|melatonin receptor 1A
hg19_v2_chr6_-_167040731_167040745	0.617142	GLI3	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chrX_+_19362011_19362122	0.615036	GLI3	ENST00000379806.5|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000545074.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000540249.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000423505.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000417819.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000422285.2|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000355808.5|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000379805.3|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1
hg19_v2_chr4_+_74735102_74735121	0.6115	GLI3	ENST00000395761.3|CXCL1|ENSG00000163739.4|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
hg19_v2_chr1_-_247242048_247242098	0.610996	GLI3	ENST00000366503.2|ZNF670|ENSG00000135747.7|zinc finger protein 670
hg19_v2_chr7_+_143078652_143078754	0.610196	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chrX_-_152939780_152939823	0.608512	GLI3	ENST00000370142.1|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000393831.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000447676.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase
hg19_v2_chr20_+_43514320_43514425	0.602473	GLI3	ENST00000372839.3|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 	ENST00000428262.1|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 	ENST00000445830.1|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
hg19_v2_chr20_+_814377_814452	0.601653	GLI3	ENST00000304189.2|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A 	ENST00000381939.1|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chrX_-_2418936_2419024	0.601552	GLI3	ENST00000461691.1|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381223.4|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381222.2|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000412516.2|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked 	ENST00000334651.5|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked
hg19_v2_chr12_-_111806892_111806925	0.601514	GLI3	ENST00000547710.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000549321.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000361483.3|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000392658.5|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A
hg19_v2_chr16_-_3767506_3767550	0.599292	GLI3	ENST00000538171.1|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr1_+_9005917_9005946	0.598437	GLI3	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr7_-_24797032_24797162	0.597095	GLI3	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr20_-_1306391_1306513	0.594453	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr5_-_137878887_137878989	0.593877	GLI3	ENST00000507939.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000572514.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000499810.2|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000360541.5|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1
hg19_v2_chr12_+_132568814_132569025	0.588824	GLI3	ENST00000454179.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000389560.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000443539.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000392352.1|EP400NL|ENSG00000185684.8|EP400 N-terminal like
hg19_v2_chr20_+_55204351_55204377	0.587908	GLI3	ENST00000201031.2|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr11_-_111783595_111783651	0.587542	GLI3	ENST00000528628.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr17_+_73642315_73642344	0.587044	GLI3	ENST00000556126.2|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr2_-_89266286_89266286	0.586841	GLI3	ENST00000464162.1|IGKV1-6|ENSG00000239855.1|immunoglobulin kappa variable 1-6
hg19_v2_chr16_-_4466622_4466665	0.585714	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr6_-_33282163_33282211	0.585504	GLI3	ENST00000434618.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000456592.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr16_+_84224740_84224746	0.581352	GLI3	ENST00000268624.3|ADAD2|ENSG00000140955.6|adenosine deaminase domain containing 2
hg19_v2_chr8_+_94929110_94929167	0.581232	GLI3	ENST00000520728.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr11_-_61658853_61658932	0.58101	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr1_-_31661000_31661000	0.579613	GLI3	ENST00000263693.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000398657.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000526106.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr11_-_30607819_30607867	0.57568	GLI3	ENST00000448418.2|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr10_-_79398250_79398353	0.574156	GLI3	ENST00000286627.5|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr6_+_99282570_99282591	0.573081	GLI3	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr19_+_35629702_35629742	0.571285	GLI3	ENST00000351325.4|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1
hg19_v2_chr7_+_119913688_119913728	0.57113	GLI3	ENST00000331113.4|KCND2|ENSG00000184408.5|potassium voltage-gated channel, Shal-related subfamily, member 2
hg19_v2_chrX_+_106449862_106449880	0.570569	GLI3	ENST00000372453.3|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3 	ENST00000535523.1|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3
hg19_v2_chr2_-_264772_264829	0.570327	GLI3	ENST00000403658.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000402632.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000415368.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000454318.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1
hg19_v2_chr5_+_179247759_179247921	0.570049	GLI3	ENST00000389805.4|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000504627.1|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000402874.3|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000510187.1|SQSTM1|ENSG00000161011.15|sequestosome 1
hg19_v2_chrY_-_21239221_21239302	0.569895	GLI3	ENST00000447937.1|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding) 	ENST00000331787.2|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding)
hg19_v2_chr11_-_59436453_59436530	0.562383	GLI3	ENST00000300146.9|PATL1|ENSG00000166889.13|protein associated with topoisomerase II homolog 1 (yeast)
hg19_v2_chr2_-_85636928_85636955	0.562344	GLI3	ENST00000449030.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr11_+_64216546_64216546	0.560064	GLI3	ENST00000316124.2|AP003774.4|ENSG00000181908.4|HCG1652096, isoform CRA_a; Uncharacterized protein; cDNA FLJ37045 fis, clone BRACE2012185
hg19_v2_chr15_+_75080883_75080890	0.559511	GLI3	ENST00000567571.1|CSK|ENSG00000103653.12|c-src tyrosine kinase
hg19_v2_chr1_+_47901689_47901689	0.558975	GLI3	ENST00000334793.5|FOXD2|ENSG00000186564.5|forkhead box D2
hg19_v2_chr16_-_4465886_4465906	0.557955	GLI3	ENST00000539968.1|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr11_-_568369_568457	0.555787	GLI3	ENST00000534540.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000528245.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000500447.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000533920.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding)
hg19_v2_chr6_-_46703069_46703081	0.552033	GLI3	ENST00000538237.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 	ENST00000274793.7|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr8_-_144691718_144691784	0.551555	GLI3	ENST00000377579.3|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000433751.1|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000220966.6|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like
hg19_v2_chr8_+_94929168_94929235	0.551448	GLI3	ENST00000518107.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000396200.3|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr22_+_46692638_46692690	0.550287	GLI3	ENST00000454366.1|GTSE1|ENSG00000075218.14|G-2 and S-phase expressed 1
hg19_v2_chr6_-_170151603_170151713	0.549861	GLI3	ENST00000366774.3|TCTE3|ENSG00000184786.4|t-complex-associated-testis-expressed 3
hg19_v2_chr8_-_142011036_142011127	0.549235	GLI3	ENST00000520892.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr3_-_53080047_53080103	0.548523	GLI3	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr20_+_43514315_43514319	0.548278	GLI3	ENST00000353703.4|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
hg19_v2_chr19_+_17186577_17186637	0.548189	GLI3	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chr1_+_92414952_92414991	0.547476	GLI3	ENST00000449584.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000427104.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000355011.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000448194.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000426141.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000450792.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000548992.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000552654.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000457265.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr7_+_916183_916204	0.546191	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr11_+_118477144_118477156	0.544946	GLI3	ENST00000361417.2|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr22_+_25003606_25003622	0.544405	GLI3	ENST00000432867.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr3_+_186648307_186648375	0.543505	GLI3	ENST00000457772.2|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 	ENST00000455441.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 	ENST00000427315.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr12_+_72148614_72148699	0.542149	GLI3	ENST00000261263.3|RAB21|ENSG00000080371.4|RAB21, member RAS oncogene family
hg19_v2_chr8_+_94929077_94929106	0.540737	GLI3	ENST00000297598.4|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000520614.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr10_+_43633914_43633935	0.540595	GLI3	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr7_-_99764853_99764886	0.540342	GLI3	ENST00000411994.1|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4 	ENST00000426974.2|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4
hg19_v2_chr16_+_84209539_84209585	0.539342	GLI3	ENST00000569735.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr6_+_31465849_31465863	0.538073	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr21_+_34697209_34697245	0.537438	GLI3	ENST00000270139.3|IFNAR1|ENSG00000142166.8|interferon (alpha, beta and omega) receptor 1
hg19_v2_chr16_+_67381263_67381284	0.536784	GLI3	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr12_-_49259643_49259681	0.536741	GLI3	ENST00000309739.5|RND1|ENSG00000172602.5|Rho family GTPase 1
hg19_v2_chr1_-_40042416_40042470	0.536322	GLI3	ENST00000372857.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000372856.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000531243.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000451091.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form)
hg19_v2_chr7_-_128045984_128046026	0.534829	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr11_+_18477369_18477431	0.534361	GLI3	ENST00000396213.3|LDHAL6A|ENSG00000166800.5|lactate dehydrogenase A-like 6A 	ENST00000280706.2|LDHAL6A|ENSG00000166800.5|lactate dehydrogenase A-like 6A
hg19_v2_chr1_-_152386732_152386745	0.534205	GLI3	ENST00000271835.3|CRNN|ENSG00000143536.7|cornulin
hg19_v2_chrX_+_48242863_48242939	0.533748	GLI3	ENST00000376886.2|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4 	ENST00000375517.3|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4
hg19_v2_chr17_-_39296739_39296798	0.53271	GLI3	ENST00000345847.4|KRTAP4-6|ENSG00000198090.3|keratin associated protein 4-6
hg19_v2_chr6_+_43457317_43457360	0.530301	GLI3	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr15_-_78933567_78933604	0.528862	GLI3	ENST00000261751.3|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal) 	ENST00000412074.2|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal)
hg19_v2_chr19_+_36208877_36208921	0.528305	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr12_-_57030115_57030177	0.528119	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr18_-_12884259_12884337	0.527754	GLI3	ENST00000353319.4|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000327283.3|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr16_-_4817129_4817219	0.527343	GLI3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr17_-_30186328_30186356	0.52691	GLI3	ENST00000302362.6|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr19_-_49015050_49015111	0.526379	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chr11_+_576494_576521	0.525766	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr16_+_67381289_67381306	0.524709	GLI3	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr15_+_90728145_90728213	0.524119	GLI3	ENST00000561085.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000379122.3|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000332496.6|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr2_-_224702257_224702266	0.523901	GLI3	ENST00000409375.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr2_-_224702270_224702326	0.523813	GLI3	ENST00000396654.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000396653.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000423110.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000443700.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr3_+_88108381_88108450	0.52344	GLI3	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr22_+_39410088_39410088	0.521578	GLI3	ENST00000361441.4|APOBEC3C|ENSG00000244509.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
hg19_v2_chr3_-_48130707_48130789	0.519308	GLI3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr6_+_31465892_31465937	0.517644	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr19_+_41281282_41281363	0.516474	GLI3	ENST00000263369.3|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr21_+_44589118_44589151	0.515142	GLI3	ENST00000291554.2|CRYAA|ENSG00000160202.3|crystallin, alpha A
hg19_v2_chr11_-_119187826_119187847	0.511779	GLI3	ENST00000264036.4|MCAM|ENSG00000076706.10|melanoma cell adhesion molecule
hg19_v2_chrX_-_23761317_23761419	0.511692	GLI3	ENST00000492081.1|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000379303.5|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000336430.7|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9
hg19_v2_chr5_+_72861560_72861605	0.510243	GLI3	ENST00000296792.4|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000509005.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000543251.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000508686.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000508491.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)
hg19_v2_chr12_-_52867569_52867598	0.5083	GLI3	ENST00000252250.6|KRT6C|ENSG00000170465.9|keratin 6C
hg19_v2_chr16_-_70729496_70729555	0.507879	GLI3	ENST00000567648.1|VAC14|ENSG00000103043.10|Vac14 homolog (S. cerevisiae)
hg19_v2_chr8_+_41386725_41386757	0.506974	GLI3	ENST00000276533.3|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000520710.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000518671.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog)
hg19_v2_chr16_-_2059748_2059777	0.504462	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr5_+_161494770_161494787	0.501826	GLI3	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr9_+_136223414_136223474	0.499756	GLI3	ENST00000371964.4|SURF2|ENSG00000148291.5|surfeit 2
hg19_v2_chr5_+_161495038_161495056	0.498347	GLI3	ENST00000393933.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr16_+_55690002_55690023	0.49393	GLI3	ENST00000414754.3|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr19_+_7598890_7599090	0.493504	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr19_+_2096868_2096922	0.492806	GLI3	ENST00000395296.1|IZUMO4|ENSG00000099840.9|IZUMO family member 4 	ENST00000395301.3|IZUMO4|ENSG00000099840.9|IZUMO family member 4
hg19_v2_chr17_-_33814851_33814890	0.491518	GLI3	ENST00000449046.1|SLFN12L|ENSG00000205045.4|schlafen family member 12-like 	ENST00000260908.7|SLFN12L|ENSG00000205045.4|schlafen family member 12-like
hg19_v2_chr2_+_131862872_131862885	0.491016	GLI3	ENST00000439822.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr4_-_159592996_159593059	0.48867	GLI3	ENST00000508457.1|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr19_+_49496782_49496873	0.488499	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chr18_+_70536215_70536275	0.487444	GLI3	ENST00000578967.1|RP11-676J15.1|ENSG00000263958.1|RP11-676J15.1
hg19_v2_chr11_-_30608413_30608423	0.486603	GLI3	ENST00000528686.1|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr8_-_145642267_145642279	0.486244	GLI3	ENST00000301305.3|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr11_-_119991589_119991609	0.485073	GLI3	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr22_+_45559722_45559881	0.484491	GLI3	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr14_-_101295407_101295537	0.482482	GLI3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr19_+_4969116_4969143	0.481601	GLI3	ENST00000588337.1|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000159111.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000381759.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B
hg19_v2_chr1_+_45205478_45205492	0.480262	GLI3	ENST00000452259.1|KIF2C|ENSG00000142945.8|kinesin family member 2C 	ENST00000372224.4|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr8_+_22428457_22428633	0.476706	GLI3	ENST00000517962.1|SORBS3|ENSG00000120896.9|sorbin and SH3 domain containing 3
hg19_v2_chr21_-_46330545_46330741	0.476663	GLI3	ENST00000320216.6|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397852.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr11_+_66025167_66025190	0.476504	GLI3	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr19_-_19754404_19754478	0.476146	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr11_+_124735282_124735332	0.475623	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr13_+_113548643_113548708	0.474253	GLI3	ENST00000375608.3|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr7_-_45026159_45026188	0.473666	GLI3	ENST00000584327.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000438705.3|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr11_-_1785139_1785222	0.472146	GLI3	ENST00000236671.2|CTSD|ENSG00000117984.8|cathepsin D
hg19_v2_chr11_+_2407287_2407325	0.47049	GLI3	ENST00000381036.3|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000492252.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr21_+_36041688_36041688	0.470329	GLI3	ENST00000360731.3|CLIC6|ENSG00000159212.8|chloride intracellular channel 6 	ENST00000349499.2|CLIC6|ENSG00000159212.8|chloride intracellular channel 6
hg19_v2_chr22_+_29279552_29279586	0.469377	GLI3	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr7_-_24797546_24797732	0.468917	GLI3	ENST00000414428.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000419307.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000342947.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr4_-_5894777_5894799	0.468405	GLI3	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr16_-_58033762_58033762	0.466892	GLI3	ENST00000299237.2|ZNF319|ENSG00000166188.2|zinc finger protein 319
hg19_v2_chr17_-_3794021_3794042	0.466754	GLI3	ENST00000381769.2|CAMKK1|ENSG00000004660.10|calcium/calmodulin-dependent protein kinase kinase 1, alpha
hg19_v2_chr12_-_52887034_52887049	0.466035	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr11_+_66025938_66026016	0.463804	GLI3	ENST00000394066.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr3_-_88108212_88108223	0.46286	GLI3	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr18_+_21529811_21529857	0.462452	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr3_-_126236605_126236621	0.461817	GLI3	ENST00000290868.2|UROC1|ENSG00000159650.4|urocanate hydratase 1
hg19_v2_chr11_+_65029421_65029459	0.461615	GLI3	ENST00000541089.1|POLA2|ENSG00000014138.4|polymerase (DNA directed), alpha 2, accessory subunit
hg19_v2_chr11_-_111649015_111649030	0.45882	GLI3	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr19_+_36024310_36024329	0.458394	GLI3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr21_-_46348694_46348788	0.45823	GLI3	ENST00000355153.4|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397850.2|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr22_-_32651326_32651340	0.457762	GLI3	ENST00000266086.4|SLC5A4|ENSG00000100191.4|solute carrier family 5 (glucose activated ion channel), member 4
hg19_v2_chr2_-_224702740_224702761	0.457411	GLI3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr18_+_5238549_5238665	0.455936	GLI3	ENST00000580684.1|LINC00667|ENSG00000263753.2|long intergenic non-protein coding RNA 667
hg19_v2_chr4_-_105416039_105416065	0.455795	GLI3	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr8_+_11141925_11141937	0.454682	GLI3	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr1_-_40105617_40105617	0.454183	GLI3	ENST00000372852.3|HEYL|ENSG00000163909.6|hes-related family bHLH transcription factor with YRPW motif-like
hg19_v2_chr19_-_59070239_59070359	0.453788	GLI3	ENST00000595957.1|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M 	ENST00000253023.3|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M
hg19_v2_chr19_+_35396219_35396233	0.449508	GLI3	ENST00000595783.1|CTC-523E23.6|ENSG00000269037.1|CTC-523E23.6
hg19_v2_chr1_-_36945097_36945097	0.447684	GLI3	ENST00000331941.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000418048.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000338937.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000440588.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte)
hg19_v2_chr1_-_229569834_229569849	0.447006	GLI3	ENST00000366684.3|ACTA1|ENSG00000143632.10|actin, alpha 1, skeletal muscle 	ENST00000366683.2|ACTA1|ENSG00000143632.10|actin, alpha 1, skeletal muscle
hg19_v2_chr17_+_10600894_10600974	0.446887	GLI3	ENST00000379774.4|ADPRM|ENSG00000170222.11|ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
hg19_v2_chr12_+_54943134_54943182	0.443722	GLI3	ENST00000243052.3|PDE1B|ENSG00000123360.7|phosphodiesterase 1B, calmodulin-dependent
hg19_v2_chr17_+_76228101_76228127	0.443608	GLI3	ENST00000550981.3|TMEM235|ENSG00000204278.8|transmembrane protein 235 	ENST00000591033.1|TMEM235|ENSG00000204278.8|transmembrane protein 235
hg19_v2_chr1_-_151798546_151798590	0.440144	GLI3	ENST00000356728.6|RORC|ENSG00000143365.12|RAR-related orphan receptor C
hg19_v2_chr12_-_6798410_6798503	0.440039	GLI3	ENST00000361959.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000436774.2|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000544482.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr5_+_173416162_173416187	0.439897	GLI3	ENST00000340147.6|C5orf47|ENSG00000185056.9|chromosome 5 open reading frame 47
hg19_v2_chr2_-_224702201_224702256	0.43939	GLI3	ENST00000446015.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr17_+_73642486_73642517	0.439254	GLI3	ENST00000579469.1|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr1_-_227922934_227923112	0.439127	GLI3	ENST00000366758.3|JMJD4|ENSG00000081692.8|jumonji domain containing 4 	ENST00000438896.2|JMJD4|ENSG00000081692.8|jumonji domain containing 4
hg19_v2_chr15_-_41047421_41047534	0.438474	GLI3	ENST00000560460.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000338376.3|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000560905.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3
hg19_v2_chr1_+_39456895_39456986	0.438	GLI3	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr6_-_25832254_25832287	0.43678	GLI3	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr1_-_2564450_2564481	0.436754	GLI3	ENST00000288709.6|MMEL1|ENSG00000142606.11|membrane metallo-endopeptidase-like 1
hg19_v2_chr10_+_1034338_1034411	0.435852	GLI3	ENST00000360803.4|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000538293.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr4_-_159593179_159593220	0.434759	GLI3	ENST00000379205.4|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr6_-_46703430_46703465	0.433933	GLI3	ENST00000537365.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr12_-_6798523_6798548	0.433892	GLI3	ENST00000319770.3|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr12_+_6881678_6881707	0.433615	GLI3	ENST00000441671.2|LAG3|ENSG00000089692.4|lymphocyte-activation gene 3 	ENST00000203629.2|LAG3|ENSG00000089692.4|lymphocyte-activation gene 3
hg19_v2_chr19_-_344786_344826	0.433472	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr12_-_45270151_45270162	0.433335	GLI3	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr11_+_32851487_32851496	0.432659	GLI3	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr10_-_62332357_62332428	0.432459	GLI3	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr16_-_3767551_3767598	0.43185	GLI3	ENST00000246957.5|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr1_+_180165672_180165817	0.430057	GLI3	ENST00000443059.1|QSOX1|ENSG00000116260.12|quiescin Q6 sulfhydryl oxidase 1
hg19_v2_chr1_+_11866270_11866317	0.42958	GLI3	ENST00000376497.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376487.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376496.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr1_+_25071848_25071944	0.429265	GLI3	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr17_+_43238438_43238461	0.427604	GLI3	ENST00000593138.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000586681.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr6_-_29600832_29600982	0.426619	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr17_+_17942684_17942784	0.426438	GLI3	ENST00000376345.3|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr20_+_31407692_31407709	0.425897	GLI3	ENST00000375571.5|MAPRE1|ENSG00000101367.8|microtubule-associated protein, RP/EB family, member 1
hg19_v2_chrX_-_45629661_45629677	0.425399	GLI3	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr3_+_130612803_130612877	0.424967	GLI3	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr6_-_53213587_53213772	0.4235	GLI3	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr17_-_71308119_71308159	0.423139	GLI3	ENST00000439510.2|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000581014.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000579611.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4
hg19_v2_chr9_-_34381511_34381529	0.422478	GLI3	ENST00000379124.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr3_-_118864893_118864915	0.421266	GLI3	ENST00000354673.2|IGSF11|ENSG00000144847.8|immunoglobulin superfamily, member 11 	ENST00000425327.2|IGSF11|ENSG00000144847.8|immunoglobulin superfamily, member 11
hg19_v2_chr3_-_139199565_139199582	0.420913	GLI3	ENST00000511956.1|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr6_+_43739697_43739752	0.42076	GLI3	ENST00000230480.6|VEGFA|ENSG00000112715.16|vascular endothelial growth factor A
hg19_v2_chr9_+_87285539_87285575	0.420675	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr20_+_3190006_3190178	0.420231	GLI3	ENST00000380113.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000455664.2|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000399838.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
hg19_v2_chr6_+_111303218_111303301	0.41944	GLI3	ENST00000441448.2|RPF2|ENSG00000197498.8|ribosome production factor 2 homolog (S. cerevisiae)
hg19_v2_chr1_+_22379120_22379177	0.419074	GLI3	ENST00000400259.1|CDC42|ENSG00000070831.11|cell division cycle 42 	ENST00000344548.3|CDC42|ENSG00000070831.11|cell division cycle 42
hg19_v2_chr15_-_74659978_74660081	0.418837	GLI3	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr14_+_22409308_22409322	0.417957	GLI3	ENST00000390441.2|TRAV9-2|ENSG00000211793.2|T cell receptor alpha variable 9-2
hg19_v2_chr5_+_80597453_80597475	0.417682	GLI3	ENST00000438268.2|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9
hg19_v2_chr9_-_132404374_132404450	0.416916	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr10_-_25012115_25012174	0.415654	GLI3	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr19_+_10216899_10217095	0.415288	GLI3	ENST00000428358.1|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000253107.7|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000556468.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000393793.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr7_-_45026200_45026273	0.414525	GLI3	ENST00000577700.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000580458.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000579383.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000584686.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000585030.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000582727.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr12_-_45270077_45270143	0.413628	GLI3	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr22_-_31885514_31885573	0.411996	GLI3	ENST00000397525.1|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1
hg19_v2_chrX_+_72667090_72667090	0.411276	GLI3	ENST00000373514.2|CDX4|ENSG00000131264.3|caudal type homeobox 4
hg19_v2_chr9_-_72435576_72435655	0.411067	GLI3	ENST00000453410.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000526458.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000439418.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head)
hg19_v2_chr3_+_39093481_39093520	0.411028	GLI3	ENST00000302313.5|WDR48|ENSG00000114742.9|WD repeat domain 48 	ENST00000544962.1|WDR48|ENSG00000114742.9|WD repeat domain 48 	ENST00000396258.3|WDR48|ENSG00000114742.9|WD repeat domain 48 	ENST00000418020.1|WDR48|ENSG00000114742.9|WD repeat domain 48
hg19_v2_chr1_+_156123318_156123358	0.410931	GLI3	ENST00000368285.3|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr10_+_88718314_88718388	0.410435	GLI3	ENST00000348795.4|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr7_-_142176790_142176842	0.409325	GLI3	ENST00000390369.2|TRBV7-4|ENSG00000253409.1|T cell receptor beta variable 7-4 (gene/pseudogene)
hg19_v2_chr19_-_19754354_19754370	0.40922	GLI3	ENST00000587238.1|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr17_-_30185946_30185970	0.408907	GLI3	ENST00000579741.1|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr4_+_62067860_62067900	0.408502	GLI3	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr19_+_41281416_41281452	0.408093	GLI3	ENST00000597140.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr11_+_45868957_45869044	0.406278	GLI3	ENST00000443527.2|CRY2|ENSG00000121671.7|cryptochrome 2 (photolyase-like)
hg19_v2_chr12_-_122751002_122751068	0.405926	GLI3	ENST00000267199.4|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr19_+_35606692_35606769	0.405423	GLI3	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr16_+_55690205_55690352	0.403426	GLI3	ENST00000379906.2|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr19_-_10679644_10679661	0.399636	GLI3	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr2_-_180726232_180726275	0.39953	GLI3	ENST00000410066.1|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chrX_+_49160148_49160148	0.399316	GLI3	ENST00000407599.3|GAGE10|ENSG00000215274.5|G antigen 10
hg19_v2_chr19_-_47922750_47922795	0.398459	GLI3	ENST00000331559.5|MEIS3|ENSG00000105419.13|Meis homeobox 3
hg19_v2_chr14_+_105452094_105452152	0.397596	GLI3	ENST00000551606.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79 	ENST00000547315.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79
hg19_v2_chr8_+_23104130_23104184	0.397016	GLI3	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr12_-_6798616_6798684	0.396966	GLI3	ENST00000355772.4|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000417772.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396801.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396799.2|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr1_-_241520385_241520457	0.396881	GLI3	ENST00000366564.1|RGS7|ENSG00000182901.11|regulator of G-protein signaling 7
hg19_v2_chr19_-_49250054_49250166	0.396501	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1 	ENST00000332955.2|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1
hg19_v2_chr22_-_21482352_21482352	0.396178	GLI3	ENST00000329949.3|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr5_-_180242534_180242567	0.39597	GLI3	ENST00000333055.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 	ENST00000513431.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chrX_-_1656000_1656043	0.395683	GLI3	ENST00000381297.4|P2RY8|ENSG00000182162.5|purinergic receptor P2Y, G-protein coupled, 8
hg19_v2_chr21_+_45879814_45879814	0.395346	GLI3	ENST00000596691.1|LRRC3DN|ENSG00000269430.1|LRRC3 downstream neighbor (non-protein coding)
hg19_v2_chr5_+_10250328_10250362	0.395108	GLI3	ENST00000515390.1|CCT5|ENSG00000150753.7|chaperonin containing TCP1, subunit 5 (epsilon)
hg19_v2_chr10_-_102989551_102989551	0.393415	GLI3	ENST00000370193.2|LBX1|ENSG00000138136.5|ladybird homeobox 1
hg19_v2_chr6_+_34204642_34204664	0.392955	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr19_+_35630022_35630083	0.392842	GLI3	ENST00000589209.1|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1
hg19_v2_chr19_+_58978463_58978476	0.392398	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chr8_-_144416965_144417066	0.392374	GLI3	ENST00000523676.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000519591.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000522043.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000329245.4|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial
hg19_v2_chr1_-_2564423_2564437	0.392236	GLI3	ENST00000378412.3|MMEL1|ENSG00000142606.11|membrane metallo-endopeptidase-like 1
hg19_v2_chr9_-_5339873_5339881	0.392121	GLI3	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr11_+_2415061_2415109	0.390545	GLI3	ENST00000481687.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr16_+_88493879_88493879	0.389448	GLI3	ENST00000565624.1|ZNF469|ENSG00000225614.2|zinc finger protein 469 	ENST00000437464.1|ZNF469|ENSG00000225614.2|zinc finger protein 469
hg19_v2_chr16_+_28834303_28834467	0.388883	GLI3	ENST00000340394.8|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000325215.6|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000395547.2|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000336783.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000382686.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000564304.1|ATXN2L|ENSG00000168488.14|ataxin 2-like
hg19_v2_chr14_-_21566731_21566836	0.388252	GLI3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr10_-_97050777_97050806	0.386539	GLI3	ENST00000329399.6|PDLIM1|ENSG00000107438.4|PDZ and LIM domain 1
hg19_v2_chr5_+_6633534_6633581	0.385753	GLI3	ENST00000537411.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 	ENST00000538824.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr5_-_132113063_132113082	0.385577	GLI3	ENST00000378719.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr6_+_163148161_163148181	0.383253	GLI3	ENST00000337019.3|PACRG|ENSG00000112530.7|PARK2 co-regulated 	ENST00000366889.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr11_+_118478313_118478358	0.383168	GLI3	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr7_+_45928079_45928096	0.382371	GLI3	ENST00000468955.1|IGFBP1|ENSG00000146678.5|insulin-like growth factor binding protein 1
hg19_v2_chr17_+_17380294_17380351	0.382019	GLI3	ENST00000268711.3|MED9|ENSG00000141026.4|mediator complex subunit 9 	ENST00000580462.1|MED9|ENSG00000141026.4|mediator complex subunit 9
hg19_v2_chr1_+_104615595_104615645	0.381489	GLI3	ENST00000418362.1|RP11-364B6.1|ENSG00000215869.3|RP11-364B6.1
hg19_v2_chr1_-_111970353_111970399	0.380977	GLI3	ENST00000369732.3|OVGP1|ENSG00000085465.11|oviductal glycoprotein 1, 120kDa
hg19_v2_chr11_-_111783919_111783937	0.379721	GLI3	ENST00000531198.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000533879.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr9_+_138391805_138391830	0.379106	GLI3	ENST00000371785.1|MRPS2|ENSG00000122140.6|mitochondrial ribosomal protein S2
hg19_v2_chr1_+_156123359_156123398	0.378336	GLI3	ENST00000368284.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000368286.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000438830.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr6_-_30181133_30181150	0.377404	GLI3	ENST00000454678.2|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000434785.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr10_+_80027105_80027199	0.376801	GLI3	ENST00000461034.1|LINC00595|ENSG00000227136.2|long intergenic non-protein coding RNA 595 	ENST00000476909.1|LINC00595|ENSG00000227136.2|long intergenic non-protein coding RNA 595 	ENST00000459633.1|LINC00595|ENSG00000227136.2|long intergenic non-protein coding RNA 595
hg19_v2_chr19_-_58090240_58090295	0.375613	GLI3	ENST00000196489.3|ZNF416|ENSG00000083817.8|zinc finger protein 416
hg19_v2_chr9_-_35958151_35958151	0.374985	GLI3	ENST00000341959.2|OR2S2|ENSG00000122718.4|olfactory receptor, family 2, subfamily S, member 2
hg19_v2_chr2_+_25015968_25016029	0.374024	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr11_-_506739_506821	0.373933	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr6_-_31671058_31671221	0.373672	GLI3	ENST00000538874.1|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A 	ENST00000395952.3|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A
hg19_v2_chr1_+_6845384_6845494	0.373346	GLI3	ENST00000303635.7|CAMTA1|ENSG00000171735.14|calmodulin binding transcription activator 1
hg19_v2_chr22_-_46373004_46373016	0.373048	GLI3	ENST00000339464.4|WNT7B|ENSG00000188064.5|wingless-type MMTV integration site family, member 7B
hg19_v2_chr3_-_42623428_42623520	0.372549	GLI3	ENST00000423701.2|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000420163.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000416880.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000536332.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000264454.3|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000273156.7|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
hg19_v2_chr20_+_34894247_34894279	0.372288	GLI3	ENST00000373913.3|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chr1_+_170904612_170904677	0.371917	GLI3	ENST00000367759.4|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9 	ENST00000367758.3|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9
hg19_v2_chr4_-_57524061_57524074	0.371815	GLI3	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr14_-_106068065_106068065	0.37097	GLI3	ENST00000390541.2|IGHE|ENSG00000211891.4|immunoglobulin heavy constant epsilon
hg19_v2_chr9_-_34381536_34381602	0.370847	GLI3	ENST00000379126.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379127.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379133.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr2_-_208031542_208031595	0.370815	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chrX_-_115594160_115594172	0.370704	GLI3	ENST00000371894.4|CXorf61|ENSG00000204019.4|cancer/testis antigen 83
hg19_v2_chr6_+_163148973_163149044	0.370123	GLI3	ENST00000366888.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr19_+_41281060_41281169	0.369579	GLI3	ENST00000594436.1|MIA|ENSG00000261857.2|melanoma inhibitory activity 	ENST00000597784.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr17_+_43239191_43239212	0.369403	GLI3	ENST00000589230.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr10_+_27444268_27444301	0.367346	GLI3	ENST00000375940.4|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like 	ENST00000342386.6|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like
hg19_v2_chrX_-_15332665_15332693	0.367291	GLI3	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chr1_-_241520525_241520536	0.365856	GLI3	ENST00000366565.1|RGS7|ENSG00000182901.11|regulator of G-protein signaling 7
hg19_v2_chr13_-_60738003_60738121	0.365565	GLI3	ENST00000400330.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400324.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr19_+_33622996_33623026	0.364318	GLI3	ENST00000592765.1|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000361680.2|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000355868.3|WDR88|ENSG00000166359.6|WD repeat domain 88
hg19_v2_chr17_-_4090402_4090406	0.36189	GLI3	ENST00000574736.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr3_+_38495333_38495422	0.361696	GLI3	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr15_-_90456156_90456198	0.361356	GLI3	ENST00000357484.5|C15orf38|ENSG00000242498.3|chromosome 15 open reading frame 38
hg19_v2_chr10_-_103454876_103455016	0.360879	GLI3	ENST00000331272.7|FBXW4|ENSG00000107829.9|F-box and WD repeat domain containing 4
hg19_v2_chr16_-_1031259_1031327	0.359196	GLI3	ENST00000563837.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000570014.1|LMF1|ENSG00000103227.14|lipase maturation factor 1 	ENST00000563863.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000565069.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2
hg19_v2_chr12_-_132690337_132690347	0.358921	GLI3	ENST00000541995.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000542942.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr22_+_51176624_51176663	0.356711	GLI3	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr8_-_135708787_135708805	0.355676	GLI3	ENST00000520356.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520727.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520214.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000518191.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000429442.2|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing
hg19_v2_chr15_-_41120896_41120922	0.353277	GLI3	ENST00000299174.5|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D 	ENST00000427255.2|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D
hg19_v2_chr1_+_202431859_202431871	0.352431	GLI3	ENST00000391959.3|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000367270.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr22_+_31488433_31488454	0.351537	GLI3	ENST00000455608.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chrX_+_153770421_153770478	0.351338	GLI3	ENST00000369609.5|IKBKG|ENSG00000073009.8|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma 	ENST00000369607.1|IKBKG|ENSG00000073009.8|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma
hg19_v2_chr16_-_22385901_22385947	0.35057	GLI3	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr11_-_535515_535592	0.350452	GLI3	ENST00000311189.7|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000451590.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000417302.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog
hg19_v2_chr1_+_162531294_162531332	0.348905	GLI3	ENST00000367926.4|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1 	ENST00000271469.3|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1
hg19_v2_chr3_-_53925863_53926015	0.348664	GLI3	ENST00000541726.1|SELK|ENSG00000113811.6|Selenoprotein K  	ENST00000495461.1|SELK|ENSG00000113811.6|Selenoprotein K
hg19_v2_chr8_-_22526597_22526661	0.347271	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr8_-_61880248_61880334	0.346948	GLI3	ENST00000525556.1|AC022182.3|ENSG00000254802.1|AC022182.3
hg19_v2_chr6_-_30181156_30181209	0.346333	GLI3	ENST00000418026.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000416596.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000453195.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr5_-_132113036_132113061	0.345773	GLI3	ENST00000378706.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr1_+_155178481_155178493	0.344661	GLI3	ENST00000368376.3|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr16_+_2097403_2097466	0.343491	GLI3	ENST00000219476.3|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr1_+_155178518_155178600	0.343411	GLI3	ENST00000316721.4|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr13_-_24007815_24007872	0.342903	GLI3	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr4_-_20985632_20985664	0.341759	GLI3	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr3_-_171528227_171528298	0.341104	GLI3	ENST00000356327.5|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific 	ENST00000342215.6|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific 	ENST00000340989.4|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific 	ENST00000351298.4|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr11_-_111784005_111784071	0.338861	GLI3	ENST00000527899.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr13_-_46756351_46756459	0.338633	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr11_-_61684962_61685063	0.338263	GLI3	ENST00000394836.2|RAB3IL1|ENSG00000167994.7|RAB3A interacting protein (rabin3)-like 1
hg19_v2_chr4_-_48908737_48908799	0.338091	GLI3	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr20_-_18447667_18447829	0.337737	GLI3	ENST00000262547.5|DZANK1|ENSG00000089091.12|double zinc ribbon and ankyrin repeat domains 1 	ENST00000329494.5|DZANK1|ENSG00000089091.12|double zinc ribbon and ankyrin repeat domains 1 	ENST00000357236.4|DZANK1|ENSG00000089091.12|double zinc ribbon and ankyrin repeat domains 1
hg19_v2_chr17_+_76227391_76227438	0.337665	GLI3	ENST00000586400.1|TMEM235|ENSG00000204278.8|transmembrane protein 235 	ENST00000421688.1|TMEM235|ENSG00000204278.8|transmembrane protein 235 	ENST00000374946.3|TMEM235|ENSG00000204278.8|transmembrane protein 235
hg19_v2_chr16_+_86612112_86612123	0.336369	GLI3	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chr11_-_116663127_116663141	0.333896	GLI3	ENST00000433069.1|APOA5|ENSG00000110243.7|apolipoprotein A-V 	ENST00000542499.1|APOA5|ENSG00000110243.7|apolipoprotein A-V
hg19_v2_chr7_-_2883928_2883993	0.332422	GLI3	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr2_-_85637459_85637495	0.332142	GLI3	ENST00000409921.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr17_+_28884130_28884130	0.331809	GLI3	ENST00000580161.1|TBC1D29|ENSG00000266733.1|TBC1 domain family, member 29
hg19_v2_chr14_+_24099318_24099333	0.330351	GLI3	ENST00000432832.2|DHRS2|ENSG00000100867.10|dehydrogenase/reductase (SDR family) member 2
hg19_v2_chr17_+_17942594_17942606	0.329378	GLI3	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr19_+_57791806_57791875	0.328438	GLI3	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr17_-_54991395_54991453	0.328435	GLI3	ENST00000316881.4|TRIM25|ENSG00000121060.10|tripartite motif containing 25
hg19_v2_chr19_-_40791302_40791443	0.327248	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr17_+_7487146_7487211	0.326868	GLI3	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr9_-_27529726_27529827	0.326626	GLI3	ENST00000262244.5|MOB3B|ENSG00000120162.9|MOB kinase activator 3B
hg19_v2_chr10_+_88718397_88718424	0.326443	GLI3	ENST00000372017.3|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr4_-_48908805_48908821	0.325702	GLI3	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr2_-_71017775_71017775	0.323981	GLI3	ENST00000332372.6|FIGLA|ENSG00000183733.6|folliculogenesis specific basic helix-loop-helix
hg19_v2_chr19_+_40697514_40697651	0.320958	GLI3	ENST00000253055.3|MAP3K10|ENSG00000130758.3|mitogen-activated protein kinase kinase kinase 10
hg19_v2_chr1_+_150229554_150229660	0.320753	GLI3	ENST00000369111.4|CA14|ENSG00000118298.6|carbonic anhydrase XIV
hg19_v2_chr7_+_149412094_149412148	0.32052	GLI3	ENST00000255992.10|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1 	ENST00000319551.8|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chr1_+_40505891_40505995	0.320175	GLI3	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chr8_+_21881636_21881651	0.320128	GLI3	ENST00000520125.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000521157.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000397940.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000522813.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2
hg19_v2_chr9_+_112542572_112542590	0.317497	GLI3	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr7_+_87257701_87257770	0.313818	GLI3	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr16_-_75241050_75241083	0.313491	GLI3	ENST00000303037.8|CTRB2|ENSG00000168928.8|chymotrypsinogen B2
hg19_v2_chr9_+_124413873_124413969	0.312093	GLI3	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr16_+_89686991_89687015	0.311511	GLI3	ENST00000393092.3|DPEP1|ENSG00000015413.5|dipeptidase 1 (renal)
hg19_v2_chr3_-_52273098_52273276	0.311039	GLI3	ENST00000499914.2|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2 	ENST00000597542.1|TLR9|ENSG00000239732.2|toll-like receptor 9 	ENST00000305533.5|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2
hg19_v2_chr7_+_44084262_44084332	0.310324	GLI3	ENST00000456905.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000440166.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000452943.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000468694.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000494774.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000490734.2|DBNL|ENSG00000136279.14|drebrin-like
hg19_v2_chr17_-_17494972_17495037	0.310222	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr2_-_71047658_71047701	0.308284	GLI3	ENST00000426626.1|CLEC4F|ENSG00000152672.3|C-type lectin domain family 4, member F
hg19_v2_chr6_-_35480640_35480653	0.307687	GLI3	ENST00000428978.1|TULP1|ENSG00000112041.8|tubby like protein 1 	ENST00000322263.4|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr22_-_24622080_24622080	0.307518	GLI3	ENST00000425408.1|GGT5|ENSG00000099998.13|gamma-glutamyltransferase 5
hg19_v2_chr16_+_30064444_30064528	0.306348	GLI3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr1_+_40420802_40420836	0.306318	GLI3	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr16_+_30064411_30064428	0.306175	GLI3	ENST00000338110.5|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr11_+_65819802_65819871	0.305668	GLI3	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chr17_-_40540586_40540600	0.3056	GLI3	ENST00000264657.5|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr19_-_35166604_35166604	0.30494	GLI3	ENST00000601241.1|SCGB2B2|ENSG00000205209.3|secretoglobin, family 2B, member 2
hg19_v2_chr3_-_49066811_49066851	0.302449	GLI3	ENST00000442157.1|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2 	ENST00000326739.4|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2
hg19_v2_chr10_-_72043432_72043432	0.301859	GLI3	ENST00000277942.6|NPFFR1|ENSG00000148734.7|neuropeptide FF receptor 1
hg19_v2_chr12_-_122985494_122985543	0.300523	GLI3	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr2_+_220283091_220283108	0.300218	GLI3	ENST00000373960.3|DES|ENSG00000175084.7|desmin
hg19_v2_chr3_+_184081213_184081224	0.299468	GLI3	ENST00000429568.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr4_-_48908822_48908845	0.297511	GLI3	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr2_+_127656486_127656495	0.297257	GLI3	ENST00000568484.1|AC114783.1|ENSG00000237524.3|Protein LOC339760  	ENST00000450035.1|AC114783.1|ENSG00000237524.3|Protein LOC339760
hg19_v2_chr21_+_45905448_45905460	0.296538	GLI3	ENST00000449713.1|AP001065.15|ENSG00000228709.1|AP001065.15
hg19_v2_chr3_-_169899504_169899542	0.296282	GLI3	ENST00000474275.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000484931.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000494943.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000497658.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000465896.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000475729.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000495893.2|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000481639.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000467570.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000466189.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila)
hg19_v2_chr18_-_44556449_44556449	0.29618	GLI3	ENST00000330682.2|TCEB3C|ENSG00000183791.4|transcription elongation factor B polypeptide 3C (elongin A3)
hg19_v2_chr11_-_123756334_123756379	0.295903	GLI3	ENST00000528595.1|TMEM225|ENSG00000204300.2|transmembrane protein 225 	ENST00000375026.2|TMEM225|ENSG00000204300.2|transmembrane protein 225
hg19_v2_chr18_-_19180681_19180711	0.295714	GLI3	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chr1_+_63788730_63788730	0.295039	GLI3	ENST00000371116.2|FOXD3|ENSG00000187140.4|forkhead box D3
hg19_v2_chr12_+_88429223_88429301	0.294606	GLI3	ENST00000356891.3|C12orf29|ENSG00000133641.13|chromosome 12 open reading frame 29
hg19_v2_chr20_-_23731893_23731920	0.293741	GLI3	ENST00000398402.1|CST1|ENSG00000170373.4|cystatin SN
hg19_v2_chr5_-_101632153_101632253	0.292745	GLI3	ENST00000310954.6|SLCO4C1|ENSG00000173930.8|solute carrier organic anion transporter family, member 4C1
hg19_v2_chr7_-_141673573_141673573	0.292362	GLI3	ENST00000547270.1|TAS2R38|ENSG00000257138.1|taste receptor, type 2, member 38
hg19_v2_chr3_-_142682178_142682178	0.292193	GLI3	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr12_+_6308881_6309041	0.291831	GLI3	ENST00000382518.1|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000536586.1|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr17_-_56621665_56621729	0.290806	GLI3	ENST00000321691.3|C17orf47|ENSG00000181013.3|chromosome 17 open reading frame 47
hg19_v2_chr6_-_31763721_31763734	0.290359	GLI3	ENST00000375663.3|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr12_-_57940904_57941002	0.290338	GLI3	ENST00000550954.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000434715.3|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000546670.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000543672.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50)
hg19_v2_chr8_+_90914757_90914856	0.289922	GLI3	ENST00000451899.2|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr17_+_4835580_4835593	0.289016	GLI3	ENST00000329125.5|GP1BA|ENSG00000185245.6|glycoprotein Ib (platelet), alpha polypeptide
hg19_v2_chr3_+_184081175_184081208	0.288998	GLI3	ENST00000452961.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H 	ENST00000296223.3|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr18_-_5238525_5238635	0.288052	GLI3	ENST00000581170.1|RP11-835E18.5|ENSG00000265091.1|RP11-835E18.5	ENST00000579933.1|RP11-835E18.5|ENSG00000265091.1|RP11-835E18.5	ENST00000581067.1|LINC00526|ENSG00000264575.1|long intergenic non-protein coding RNA 526
hg19_v2_chr3_+_32993065_32993074	0.287701	GLI3	ENST00000330953.5|CCR4|ENSG00000183813.6|chemokine (C-C motif) receptor 4
hg19_v2_chr17_-_6735012_6735030	0.287083	GLI3	ENST00000535086.1|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr20_+_36149602_36149665	0.286495	GLI3	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr11_-_13484713_13484850	0.286488	GLI3	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr11_+_59824127_59824161	0.286293	GLI3	ENST00000278865.3|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr3_+_133118839_133118925	0.285674	GLI3	ENST00000302334.2|BFSP2|ENSG00000170819.4|beaded filament structural protein 2, phakinin
hg19_v2_chr14_-_36983034_36983064	0.285467	GLI3	ENST00000518529.2|SFTA3|ENSG00000229415.5|surfactant associated 3
hg19_v2_chr22_+_39898325_39898382	0.285364	GLI3	ENST00000325301.2|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1 	ENST00000404569.1|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1
hg19_v2_chr1_-_46664074_46664126	0.285022	GLI3	ENST00000371986.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 	ENST00000371984.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
hg19_v2_chr6_+_27356497_27356557	0.284966	GLI3	ENST00000244576.4|ZNF391|ENSG00000124613.4|zinc finger protein 391
hg19_v2_chr19_+_38810447_38810529	0.284209	GLI3	ENST00000263372.3|KCNK6|ENSG00000099337.3|potassium channel, subfamily K, member 6
hg19_v2_chr12_+_6977258_6977319	0.283871	GLI3	ENST00000488464.2|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000535434.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000493987.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1
hg19_v2_chr16_+_2564254_2564305	0.282711	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr12_+_128751948_128751948	0.280707	GLI3	ENST00000435159.2|TMEM132C|ENSG00000181234.8|transmembrane protein 132C
hg19_v2_chr16_-_755819_755860	0.279624	GLI3	ENST00000397621.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr1_-_201368707_201368760	0.27869	GLI3	ENST00000391967.2|LAD1|ENSG00000159166.9|ladinin 1
hg19_v2_chr6_+_30689350_30689366	0.277744	GLI3	ENST00000330914.3|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr19_+_51152702_51152702	0.277535	GLI3	ENST00000425202.1|C19orf81|ENSG00000235034.2|chromosome 19 open reading frame 81
hg19_v2_chr4_+_1283639_1283705	0.276905	GLI3	ENST00000303400.4|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000505177.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000503653.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000264750.6|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000502558.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000452175.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000514708.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher
hg19_v2_chr5_+_76506706_76506787	0.276763	GLI3	ENST00000340978.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000346042.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000264917.5|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000342343.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000333194.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B
hg19_v2_chr6_+_33172407_33172419	0.276233	GLI3	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr14_-_39572345_39572453	0.274797	GLI3	ENST00000548032.2|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000556092.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000557280.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000545328.2|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000553970.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae)
hg19_v2_chr8_-_41655107_41655159	0.274788	GLI3	ENST00000347528.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000289734.7|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000379758.2|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396945.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396942.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000352337.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr18_-_44550534_44550534	0.274142	GLI3	ENST00000451265.1|TCEB3CL|ENSG00000234298.1|transcription elongation factor B polypeptide 3C-like
hg19_v2_chr2_+_27851863_27851930	0.274126	GLI3	ENST00000264718.3|GPN1|ENSG00000198522.9|GPN-loop GTPase 1 	ENST00000610189.1|GPN1|ENSG00000198522.9|GPN-loop GTPase 1
hg19_v2_chr19_+_41856816_41856871	0.274031	GLI3	ENST00000539627.1|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr1_-_202129105_202129140	0.273788	GLI3	ENST00000367279.4|PTPN7|ENSG00000143851.11|protein tyrosine phosphatase, non-receptor type 7
hg19_v2_chr3_-_128902759_128902770	0.272406	GLI3	ENST00000422453.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000504813.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000512338.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chrX_-_47489244_47489364	0.271618	GLI3	ENST00000469388.1|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000396992.3|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000377005.2|CFP|ENSG00000126759.8|complement factor properdin
hg19_v2_chr1_+_233463507_233463520	0.271077	GLI3	ENST00000366623.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4  	ENST00000366624.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4
hg19_v2_chr3_-_39196049_39196062	0.270415	GLI3	ENST00000514182.1|CSRNP1|ENSG00000144655.10|cysteine-serine-rich nuclear protein 1
hg19_v2_chr18_-_44544607_44544607	0.270088	GLI3	ENST00000591973.2|TCEB3CL2|ENSG00000266996.2|transcription elongation factor B polypeptide 3C-like 2
hg19_v2_chr19_-_44100275_44100302	0.269366	GLI3	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr3_-_187009646_187009778	0.269253	GLI3	ENST00000296280.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392470.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000169293.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000439271.1|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392472.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392475.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
hg19_v2_chr20_+_44098346_44098373	0.268665	GLI3	ENST00000372676.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr11_+_1889880_1889903	0.268181	GLI3	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr7_+_73624276_73624311	0.267976	GLI3	ENST00000475494.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2 	ENST00000398475.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2
hg19_v2_chrX_+_12809463_12809607	0.265949	GLI3	ENST00000380663.3|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2 	ENST00000380668.5|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2 	ENST00000398491.2|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2 	ENST00000489404.1|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2
hg19_v2_chr17_-_42200996_42201070	0.26543	GLI3	ENST00000587135.1|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000225983.6|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000393622.2|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000588703.1|HDAC5|ENSG00000108840.11|histone deacetylase 5
hg19_v2_chr9_-_136242909_136242953	0.26497	GLI3	ENST00000371991.3|SURF4|ENSG00000148248.9|surfeit 4 	ENST00000545297.1|SURF4|ENSG00000148248.9|surfeit 4
hg19_v2_chr9_-_139334247_139334302	0.264314	GLI3	ENST00000371712.3|INPP5E|ENSG00000148384.11|inositol polyphosphate-5-phosphatase, 72 kDa
hg19_v2_chr3_+_46598888_46598888	0.26391	GLI3	ENST00000599511.1|LUZPP1|ENSG00000268324.1|HCG1777807; Leucine zipper protein 3; Uncharacterized protein
hg19_v2_chr17_-_21117902_21117937	0.26385	GLI3	ENST00000317635.5|TMEM11|ENSG00000178307.5|transmembrane protein 11
hg19_v2_chrX_+_49020882_49020882	0.263694	GLI3	ENST00000454342.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr19_-_376011_376031	0.263407	GLI3	ENST00000342640.4|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr16_-_2004683_2004727	0.263042	GLI3	ENST00000268661.7|RPL3L|ENSG00000140986.7|ribosomal protein L3-like
hg19_v2_chr7_-_33148975_33149050	0.262802	GLI3	ENST00000297157.3|RP9|ENSG00000164610.4|retinitis pigmentosa 9 (autosomal dominant)
hg19_v2_chr20_-_18477862_18477890	0.26249	GLI3	ENST00000337227.4|RBBP9|ENSG00000089050.10|retinoblastoma binding protein 9
hg19_v2_chr19_-_41196534_41196568	0.26193	GLI3	ENST00000252891.4|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr20_+_49348081_49348096	0.261583	GLI3	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr5_-_141060389_141060439	0.259957	GLI3	ENST00000504448.1|ARAP3|ENSG00000120318.11|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
hg19_v2_chr5_+_172332220_172332371	0.259659	GLI3	ENST00000518247.1|ERGIC1|ENSG00000113719.11|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 	ENST00000326654.2|ERGIC1|ENSG00000113719.11|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
hg19_v2_chr8_+_144328991_144329280	0.258785	GLI3	ENST00000520584.1|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000330701.4|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000522452.1|ZFP41|ENSG00000264668.1|ZFP41
hg19_v2_chr8_+_37594103_37594125	0.258352	GLI3	ENST00000397228.2|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2
hg19_v2_chr1_+_207669573_207669606	0.25805	GLI3	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr11_-_74442430_74442481	0.257641	GLI3	ENST00000376332.3|CHRDL2|ENSG00000054938.11|chordin-like 2
hg19_v2_chr12_-_54978086_54978100	0.257331	GLI3	ENST00000553113.1|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chr14_-_106586656_106586668	0.257074	GLI3	ENST00000390602.2|IGHV3-13|ENSG00000211942.2|immunoglobulin heavy variable 3-13
hg19_v2_chr3_-_128902729_128902753	0.256986	GLI3	ENST00000451728.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000446936.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000502976.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000500450.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000441626.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr9_-_26947453_26947473	0.256202	GLI3	ENST00000397292.3|PLAA|ENSG00000137055.10|phospholipase A2-activating protein
hg19_v2_chr8_-_122653630_122653661	0.255863	GLI3	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr8_-_119634141_119634234	0.255191	GLI3	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr17_+_7761013_7761074	0.254286	GLI3	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr19_+_29493456_29493477	0.252789	GLI3	ENST00000591143.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2	ENST00000592653.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2
hg19_v2_chr19_+_40476912_40476939	0.252527	GLI3	ENST00000157812.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chrX_+_70364667_70364721	0.251809	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr1_+_154947126_154947147	0.251691	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr5_-_1799965_1800009	0.251028	GLI3	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr1_-_45288932_45288932	0.250794	GLI3	ENST00000438067.1|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr14_+_104095514_104095634	0.250395	GLI3	ENST00000348520.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000380038.3|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000389744.4|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557575.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000553286.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000347839.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000555836.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000334553.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000246489.7|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557450.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000452929.2|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000554280.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000445352.4|KLC1|ENSG00000126214.16|kinesin light chain 1
hg19_v2_chr18_+_11752040_11752117	0.249483	GLI3	ENST00000423027.3|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr2_+_241564655_241564668	0.249166	GLI3	ENST00000407714.1|GPR35|ENSG00000178623.7|G protein-coupled receptor 35
hg19_v2_chr16_+_4526341_4526460	0.248218	GLI3	ENST00000458134.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000219700.6|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000575120.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000572812.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000574466.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000576827.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000570445.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr5_-_150521192_150521229	0.248138	GLI3	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chr9_-_139258235_139258245	0.246419	GLI3	ENST00000371738.3|DNLZ|ENSG00000213221.4|DNL-type zinc finger
hg19_v2_chr21_-_46340884_46341048	0.245815	GLI3	ENST00000302347.5|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000517819.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr1_+_154947148_154947175	0.245669	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr17_+_72270380_72270420	0.243759	GLI3	ENST00000582036.1|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2 	ENST00000307504.5|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2
hg19_v2_chr1_+_202995611_202995680	0.240882	GLI3	ENST00000367240.2|PPFIA4|ENSG00000143847.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
hg19_v2_chr7_-_73668692_73668774	0.240846	GLI3	ENST00000352131.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa 	ENST00000055077.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa
hg19_v2_chr1_-_110283138_110283138	0.240437	GLI3	ENST00000256594.3|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr1_-_2343951_2344018	0.239989	GLI3	ENST00000288774.3|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000507596.1|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000447513.2|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10
hg19_v2_chr11_+_120973375_120973375	0.239567	GLI3	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr18_-_31803435_31803515	0.239099	GLI3	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr4_+_166300084_166300094	0.238629	GLI3	ENST00000402744.4|CPE|ENSG00000109472.9|carboxypeptidase E
hg19_v2_chr17_-_73149921_73149971	0.237859	GLI3	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr11_-_3013603_3013621	0.237736	GLI3	ENST00000380542.4|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000526115.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4
hg19_v2_chr22_+_22764088_22764105	0.236865	GLI3	ENST00000390299.2|IGLV1-40|ENSG00000211653.2|immunoglobulin lambda variable 1-40
hg19_v2_chr8_+_21882244_21882362	0.236664	GLI3	ENST00000289820.6|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000381530.5|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2
hg19_v2_chr3_-_108308241_108308316	0.236041	GLI3	ENST00000295746.8|KIAA1524|ENSG00000163507.9|KIAA1524
hg19_v2_chr16_+_2880157_2880210	0.235415	GLI3	ENST00000382280.3|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr17_-_6735035_6735080	0.235349	GLI3	ENST00000338694.2|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr2_-_204400013_204400058	0.235292	GLI3	ENST00000374489.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000374488.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000308091.4|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000453034.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000420371.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr5_-_132112921_132112960	0.235151	GLI3	ENST00000378721.4|SEPT8|ENSG00000164402.9|septin 8 	ENST00000378701.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr8_+_145218673_145218673	0.235106	GLI3	ENST00000326134.5|MROH1|ENSG00000179832.13|maestro heat-like repeat family member 1
hg19_v2_chr19_-_10213335_10213472	0.23509	GLI3	ENST00000592641.1|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6 	ENST00000253109.4|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6
hg19_v2_chr19_+_58962971_58963014	0.234288	GLI3	ENST00000336614.4|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000545523.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599194.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000598244.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599193.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000594214.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000391696.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B
hg19_v2_chrX_-_148713365_148713438	0.233851	GLI3	ENST00000511776.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000507237.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr19_-_375970_375996	0.233758	GLI3	ENST00000346878.2|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr1_-_11024258_11024258	0.233485	GLI3	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr2_+_65215604_65215625	0.233231	GLI3	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr1_+_179561011_179561029	0.232544	GLI3	ENST00000294848.8|TDRD5|ENSG00000162782.11|tudor domain containing 5 	ENST00000444136.1|TDRD5|ENSG00000162782.11|tudor domain containing 5
hg19_v2_chrX_-_53254358_53254406	0.231225	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr9_-_101017900_101017951	0.231178	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr2_-_31030277_31030317	0.230894	GLI3	ENST00000534090.2|CAPN13|ENSG00000162949.12|calpain 13 	ENST00000295055.8|CAPN13|ENSG00000162949.12|calpain 13
hg19_v2_chr10_-_75193308_75193325	0.23063	GLI3	ENST00000299432.2|MSS51|ENSG00000166343.5|MSS51 mitochondrial translational activator
hg19_v2_chr19_-_2739992_2740027	0.230588	GLI3	ENST00000545664.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000589363.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000455372.2|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3
hg19_v2_chr14_+_74960423_74960479	0.230031	GLI3	ENST00000556816.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000298818.8|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000554924.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2
hg19_v2_chr20_-_50722183_50722217	0.22984	GLI3	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr13_-_108867101_108867130	0.22964	GLI3	ENST00000356922.4|LIG4|ENSG00000174405.9|ligase IV, DNA, ATP-dependent
hg19_v2_chr4_-_176733897_176733906	0.229563	GLI3	ENST00000393658.2|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr11_-_46615498_46615675	0.228487	GLI3	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr10_-_112064665_112064737	0.22774	GLI3	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr1_-_55266865_55266876	0.227729	GLI3	ENST00000371274.4|TTC22|ENSG00000006555.6|tetratricopeptide repeat domain 22
hg19_v2_chr12_-_82153087_82153138	0.227613	GLI3	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr10_+_82298088_82298088	0.227192	GLI3	ENST00000470604.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr1_+_13910194_13910339	0.226952	GLI3	ENST00000376057.4|PDPN|ENSG00000162493.12|podoplanin 	ENST00000510906.1|PDPN|ENSG00000162493.12|podoplanin
hg19_v2_chr17_-_18161870_18162084	0.226081	GLI3	ENST00000579294.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000545457.2|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000379450.4|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000578558.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila)
hg19_v2_chr20_+_18447771_18447771	0.225846	GLI3	ENST00000377603.4|POLR3F|ENSG00000132664.7|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
hg19_v2_chr9_+_140125385_140125385	0.225709	GLI3	ENST00000361134.2|SLC34A3|ENSG00000198569.5|solute carrier family 34 (type II sodium/phosphate contransporter), member 3
hg19_v2_chr13_+_44947941_44947996	0.224975	GLI3	ENST00000379179.3|SERP2|ENSG00000151778.6|stress-associated endoplasmic reticulum protein family member 2
hg19_v2_chr3_+_14166440_14166541	0.224065	GLI3	ENST00000306077.4|TMEM43|ENSG00000170876.7|transmembrane protein 43
hg19_v2_chr3_-_150421728_150421746	0.223962	GLI3	ENST00000295910.6|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A 	ENST00000491361.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr10_-_43903217_43903267	0.223596	GLI3	ENST00000357065.4|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr20_-_6104191_6104228	0.223466	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr19_-_48389651_48389656	0.222938	GLI3	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr7_-_151217001_151217019	0.222093	GLI3	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr18_-_70534745_70534810	0.22192	GLI3	ENST00000583169.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr1_+_47603109_47603127	0.221893	GLI3	ENST00000371890.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000294337.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000371891.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22
hg19_v2_chr1_-_231376836_231376865	0.221817	GLI3	ENST00000451322.1|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131
hg19_v2_chr2_+_159825143_159825190	0.221763	GLI3	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr4_-_46391805_46391924	0.220849	GLI3	ENST00000540012.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr19_+_10217270_10217321	0.220534	GLI3	ENST00000446223.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr11_-_116662593_116662620	0.220009	GLI3	ENST00000227665.4|APOA5|ENSG00000110243.7|apolipoprotein A-V
hg19_v2_chr12_-_13248705_13248710	0.219658	GLI3	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr13_+_51796497_51796517	0.219601	GLI3	ENST00000322475.8|FAM124A|ENSG00000150510.11|family with sequence similarity 124A 	ENST00000280057.6|FAM124A|ENSG00000150510.11|family with sequence similarity 124A
hg19_v2_chr16_-_3285144_3285191	0.219408	GLI3	ENST00000431561.3|ZNF200|ENSG00000010539.7|zinc finger protein 200 	ENST00000396870.4|ZNF200|ENSG00000010539.7|zinc finger protein 200
hg19_v2_chr1_-_115053781_115053853	0.219053	GLI3	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr16_-_88717482_88717560	0.219022	GLI3	ENST00000261623.3|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr19_+_40477062_40477112	0.218622	GLI3	ENST00000455878.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr16_+_30937213_30937213	0.218163	GLI3	ENST00000427128.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr19_+_52873166_52873208	0.218063	GLI3	ENST00000424032.2|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000600321.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000344085.5|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000597976.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000422689.2|ZNF880|ENSG00000221923.4|zinc finger protein 880
hg19_v2_chr3_+_108308513_108308558	0.21758	GLI3	ENST00000361582.3|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr22_-_50970506_50970561	0.217457	GLI3	ENST00000428989.2|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000403326.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr15_-_90456114_90456151	0.21695	GLI3	ENST00000398333.3|C15orf38-AP3S2|ENSG00000250021.3|C15orf38-AP3S2 readthrough
hg19_v2_chr1_-_47407136_47407154	0.216542	GLI3	ENST00000462347.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000371905.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000310638.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr11_-_65374430_65374497	0.216053	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr11_+_60197040_60197062	0.215949	GLI3	ENST00000300190.2|MS4A5|ENSG00000166930.2|membrane-spanning 4-domains, subfamily A, member 5
hg19_v2_chr16_+_70488480_70488630	0.215667	GLI3	ENST00000572784.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000574784.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000571514.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000378912.2|FUK|ENSG00000157353.12|fucokinase 	ENST00000428974.2|FUK|ENSG00000157353.12|fucokinase 	ENST00000573352.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000576453.1|FUK|ENSG00000157353.12|fucokinase
hg19_v2_chr11_+_64052944_64052986	0.215073	GLI3	ENST00000535675.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137 	ENST00000543383.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr5_-_132112907_132112918	0.214822	GLI3	ENST00000458488.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr3_-_179169330_179169384	0.214782	GLI3	ENST00000232564.3|GNB4|ENSG00000114450.5|guanine nucleotide binding protein (G protein), beta polypeptide 4
hg19_v2_chr16_+_3508063_3508086	0.214765	GLI3	ENST00000576787.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572942.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000576916.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000575076.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572131.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit
hg19_v2_chr11_+_34938119_34938204	0.214597	GLI3	ENST00000227868.4|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X 	ENST00000430469.2|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X 	ENST00000533262.1|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X
hg19_v2_chr1_-_156542328_156542364	0.214558	GLI3	ENST00000361170.2|IQGAP3|ENSG00000183856.6|IQ motif containing GTPase activating protein 3
hg19_v2_chr16_-_88717423_88717469	0.214001	GLI3	ENST00000568278.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000569359.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000567174.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr13_-_20767037_20767083	0.213233	GLI3	ENST00000382848.4|GJB2|ENSG00000165474.5|gap junction protein, beta 2, 26kDa
hg19_v2_chr3_+_184081137_184081155	0.213014	GLI3	ENST00000443489.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr19_+_10217364_10217409	0.212716	GLI3	ENST00000430370.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr20_+_61147651_61147666	0.21198	GLI3	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr1_-_6052463_6052542	0.211903	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr17_+_7621045_7621079	0.211902	GLI3	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr22_-_50708781_50708852	0.211639	GLI3	ENST00000449719.2|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11 	ENST00000330651.6|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11
hg19_v2_chr1_-_146040968_146040968	0.211432	GLI3	ENST00000401010.3|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11
hg19_v2_chr17_-_78120936_78120992	0.211423	GLI3	ENST00000576547.1|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3 	ENST00000269349.3|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3
hg19_v2_chr8_+_90914073_90914087	0.210761	GLI3	ENST00000297438.2|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr2_+_232573208_232573219	0.210238	GLI3	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr1_-_160549235_160549306	0.210099	GLI3	ENST00000368054.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368048.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000311224.4|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368051.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000534968.1|CD84|ENSG00000066294.10|CD84 molecule
hg19_v2_chr6_-_35480705_35480718	0.208668	GLI3	ENST00000229771.6|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr1_+_44440575_44440646	0.208243	GLI3	ENST00000532642.1|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000236067.4|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000471859.2|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
hg19_v2_chr22_-_23922448_23922495	0.208147	GLI3	ENST00000438703.1|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1 	ENST00000330377.2|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr19_-_11616645_11616738	0.20804	GLI3	ENST00000293771.5|ZNF653|ENSG00000161914.5|zinc finger protein 653
hg19_v2_chr16_-_2318055_2318104	0.207873	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr1_-_160681593_160681641	0.206645	GLI3	ENST00000368045.3|CD48|ENSG00000117091.5|CD48 molecule 	ENST00000368046.3|CD48|ENSG00000117091.5|CD48 molecule
hg19_v2_chr5_+_169931249_169931364	0.205413	GLI3	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr1_+_31971828_31971841	0.205077	GLI3	ENST00000418618.1|RP11-439L8.3|ENSG00000228682.2|RP11-439L8.3
hg19_v2_chr11_+_45907177_45907233	0.20482	GLI3	ENST00000241014.2|MAPK8IP1|ENSG00000121653.7|mitogen-activated protein kinase 8 interacting protein 1
hg19_v2_chr17_-_72919317_72919368	0.203907	GLI3	ENST00000319642.1|USH1G|ENSG00000182040.4|Usher syndrome 1G (autosomal recessive)
hg19_v2_chr7_+_38217920_38218003	0.20307	GLI3	ENST00000396013.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000440144.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000453225.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000429075.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like
hg19_v2_chr20_+_5986727_5986755	0.202963	GLI3	ENST00000378863.4|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr9_+_4839762_4839779	0.202816	GLI3	ENST00000448872.2|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000441844.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr4_+_79567314_79567348	0.202707	GLI3	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr5_+_218356_218453	0.202195	GLI3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr7_+_156931889_156931970	0.202124	GLI3	ENST00000389103.4|UBE3C|ENSG00000009335.13|ubiquitin protein ligase E3C
hg19_v2_chr3_+_47844399_47844457	0.20203	GLI3	ENST00000446256.2|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30 	ENST00000445061.1|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr17_+_40714092_40714205	0.200696	GLI3	ENST00000420359.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000449624.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585811.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585909.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000586771.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000421097.2|COASY|ENSG00000068120.10|CoA synthase 	ENST00000591779.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587858.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587214.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587157.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000590958.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000393818.2|COASY|ENSG00000068120.10|CoA synthase
hg19_v2_chr6_-_33037019_33037047	0.20069	GLI3	ENST00000437811.1|HLA-DPA1|ENSG00000231389.3|major histocompatibility complex, class II, DP alpha 1
hg19_v2_chr19_+_15904761_15904761	0.199684	GLI3	ENST00000308940.8|OR10H5|ENSG00000172519.8|olfactory receptor, family 10, subfamily H, member 5
hg19_v2_chr11_-_796197_796361	0.199312	GLI3	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr5_-_168727713_168727755	0.199178	GLI3	ENST00000404867.3|SLIT3|ENSG00000184347.10|slit homolog 3 (Drosophila)
hg19_v2_chr9_-_122131696_122131745	0.199063	GLI3	ENST00000373964.2|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1 	ENST00000265922.3|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1
hg19_v2_chr17_-_48785216_48785291	0.198617	GLI3	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr10_+_1034646_1034660	0.19861	GLI3	ENST00000360059.5|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000545048.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr3_-_58652523_58652575	0.197609	GLI3	ENST00000489857.1|FAM3D|ENSG00000198643.2|family with sequence similarity 3, member D 	ENST00000358781.2|FAM3D|ENSG00000198643.2|family with sequence similarity 3, member D
hg19_v2_chr22_-_43411106_43411165	0.1975	GLI3	ENST00000453643.1|PACSIN2|ENSG00000100266.13|protein kinase C and casein kinase substrate in neurons 2 	ENST00000263246.3|PACSIN2|ENSG00000100266.13|protein kinase C and casein kinase substrate in neurons 2 	ENST00000337959.4|PACSIN2|ENSG00000100266.13|protein kinase C and casein kinase substrate in neurons 2
hg19_v2_chr1_+_36396791_36396878	0.19688	GLI3	ENST00000246314.6|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr7_+_47694842_47694842	0.196344	GLI3	ENST00000408988.2|C7orf65|ENSG00000221845.2|chromosome 7 open reading frame 65
hg19_v2_chr1_+_160765884_160765903	0.195644	GLI3	ENST00000392203.4|LY9|ENSG00000122224.13|lymphocyte antigen 9
hg19_v2_chr1_+_214163033_214163073	0.195375	GLI3	ENST00000607425.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr22_-_42765174_42765282	0.19513	GLI3	ENST00000432473.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000412060.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000424852.1|Z83851.1|ENSG00000229891.1|Z83851.1
hg19_v2_chr19_+_39833036_39833108	0.195066	GLI3	ENST00000602243.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000598913.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000314471.6|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B
hg19_v2_chr19_+_45349630_45349783	0.194485	GLI3	ENST00000252483.5|PVRL2|ENSG00000130202.5|poliovirus receptor-related 2 (herpesvirus entry mediator B)
hg19_v2_chr5_+_67088974_67089048	0.194223	GLI3	ENST00000513234.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000504068.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000515227.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1
hg19_v2_chr21_-_26979786_26979829	0.194041	GLI3	ENST00000419219.1|MRPL39|ENSG00000154719.9|mitochondrial ribosomal protein L39 	ENST00000352957.4|MRPL39|ENSG00000154719.9|mitochondrial ribosomal protein L39 	ENST00000307301.7|MRPL39|ENSG00000154719.9|mitochondrial ribosomal protein L39
hg19_v2_chr1_+_209941827_209941837	0.194027	GLI3	ENST00000367023.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr8_+_11351494_11351511	0.193962	GLI3	ENST00000259089.4|BLK|ENSG00000136573.8|B lymphoid tyrosine kinase
hg19_v2_chr12_-_45269430_45269440	0.193878	GLI3	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr1_+_180897269_180897295	0.193839	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr1_+_10509971_10510095	0.193664	GLI3	ENST00000320498.4|CORT|ENSG00000241563.2|cortistatin
hg19_v2_chr11_-_35441597_35441613	0.193093	GLI3	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr9_-_113800317_113800328	0.192946	GLI3	ENST00000374431.3|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr15_+_85923797_85923844	0.192935	GLI3	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr14_+_96343100_96343115	0.192895	GLI3	ENST00000503525.2|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr4_+_79567362_79567380	0.192462	GLI3	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr7_+_130020932_130020948	0.192276	GLI3	ENST00000484324.1|CPA1|ENSG00000091704.5|carboxypeptidase A1 (pancreatic)
hg19_v2_chr3_+_46204959_46205096	0.19208	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.10|chemokine (C-C motif) receptor 3
hg19_v2_chr7_+_23145884_23145917	0.191979	GLI3	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr8_-_6795823_6795860	0.191678	GLI3	ENST00000297435.2|DEFA4|ENSG00000164821.4|defensin, alpha 4, corticostatin
hg19_v2_chr9_+_87285257_87285311	0.190509	GLI3	ENST00000323115.4|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr11_-_116708302_116708347	0.189666	GLI3	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr2_+_26915584_26915634	0.18964	GLI3	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr9_+_136399929_136399975	0.188668	GLI3	ENST00000393060.1|ADAMTSL2|ENSG00000197859.5|ADAMTS-like 2
hg19_v2_chr12_+_48166978_48167047	0.188246	GLI3	ENST00000442218.2|SLC48A1|ENSG00000211584.9|solute carrier family 48 (heme transporter), member 1
hg19_v2_chr10_+_70939983_70940044	0.187816	GLI3	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr16_+_30034655_30034722	0.187687	GLI3	ENST00000300575.2|C16orf92|ENSG00000167194.3|chromosome 16 open reading frame 92
hg19_v2_chr19_+_20278043_20278083	0.187627	GLI3	ENST00000335117.8|ZNF486|ENSG00000256229.3|zinc finger protein 486
hg19_v2_chr11_+_64949343_64949454	0.187591	GLI3	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr10_+_106028923_106028956	0.187317	GLI3	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr12_+_100661156_100661210	0.186908	GLI3	ENST00000360820.2|SCYL2|ENSG00000136021.13|SCY1-like 2 (S. cerevisiae)
hg19_v2_chr10_-_135116364_135116485	0.186603	GLI3	ENST00000252936.3|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2 	ENST00000543663.1|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2
hg19_v2_chr1_-_155225178_155225225	0.186501	GLI3	ENST00000361361.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chr17_-_73905899_73905899	0.186316	GLI3	ENST00000409963.3|MRPL38|ENSG00000204316.8|mitochondrial ribosomal protein L38
hg19_v2_chr19_-_19281054_19281098	0.186199	GLI3	ENST00000424583.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000410050.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409224.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409447.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B
hg19_v2_chr8_+_146052849_146053003	0.185695	GLI3	ENST00000532777.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000325241.6|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000446747.2|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000525266.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000544249.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000325217.5|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000533314.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000527218.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000529819.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000528372.1|ZNF7|ENSG00000147789.11|zinc finger protein 7
hg19_v2_chr12_-_7904201_7904218	0.184923	GLI3	ENST00000354629.5|CLEC4C|ENSG00000198178.6|C-type lectin domain family 4, member C
hg19_v2_chr19_-_39226045_39226071	0.183687	GLI3	ENST00000597987.1|CAPN12|ENSG00000182472.4|calpain 12 	ENST00000595177.1|CAPN12|ENSG00000182472.4|calpain 12
hg19_v2_chr19_-_18366182_18366229	0.183578	GLI3	ENST00000355502.3|PDE4C|ENSG00000105650.17|phosphodiesterase 4C, cAMP-specific
hg19_v2_chr22_+_40742512_40742543	0.183072	GLI3	ENST00000454266.2|ADSL|ENSG00000239900.7|adenylosuccinate lyase 	ENST00000342312.6|ADSL|ENSG00000239900.7|adenylosuccinate lyase
hg19_v2_chr1_-_120190396_120190396	0.183066	GLI3	ENST00000421812.2|ZNF697|ENSG00000143067.4|zinc finger protein 697
hg19_v2_chr12_-_63328817_63328870	0.182738	GLI3	ENST00000228705.6|PPM1H|ENSG00000111110.7|protein phosphatase, Mg2+/Mn2+ dependent, 1H
hg19_v2_chr16_-_2318373_2318414	0.182355	GLI3	ENST00000566458.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000320225.5|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr19_+_16771936_16772072	0.181875	GLI3	ENST00000187762.2|TMEM38A|ENSG00000072954.2|transmembrane protein 38A 	ENST00000599479.1|TMEM38A|ENSG00000072954.2|transmembrane protein 38A
hg19_v2_chr1_+_32479430_32479597	0.181498	GLI3	ENST00000327300.7|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1 	ENST00000492989.1|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1
hg19_v2_chrX_-_151903101_151903164	0.181406	GLI3	ENST00000393900.3|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12
hg19_v2_chr19_+_58125580_58125639	0.180765	GLI3	ENST00000600344.1|ZNF134|ENSG00000213762.6|zinc finger protein 134 	ENST00000396161.5|ZNF134|ENSG00000213762.6|zinc finger protein 134 	ENST00000600883.1|ZNF134|ENSG00000213762.6|zinc finger protein 134
hg19_v2_chrX_+_49178536_49178536	0.17992	GLI3	ENST00000442437.2|GAGE12J|ENSG00000224659.2|G antigen 12J
hg19_v2_chr8_-_33457453_33457624	0.179796	GLI3	ENST00000523956.1|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative) 	ENST00000256261.4|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative)
hg19_v2_chr5_-_145562147_145562240	0.178249	GLI3	ENST00000545646.1|LARS|ENSG00000133706.13|leucyl-tRNA synthetase 	ENST00000274562.9|LARS|ENSG00000133706.13|leucyl-tRNA synthetase 	ENST00000510191.1|LARS|ENSG00000133706.13|leucyl-tRNA synthetase 	ENST00000394434.2|LARS|ENSG00000133706.13|leucyl-tRNA synthetase
hg19_v2_chr1_-_28559502_28559570	0.177621	GLI3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr12_-_122750957_122751001	0.177584	GLI3	ENST00000451053.2|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr15_-_78526942_78527049	0.177346	GLI3	ENST00000258873.4|ACSBG1|ENSG00000103740.5|acyl-CoA synthetase bubblegum family member 1
hg19_v2_chr9_-_101017862_101017897	0.176507	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr8_-_145652336_145652378	0.176295	GLI3	ENST00000529182.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000526054.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr2_-_95787738_95787763	0.175675	GLI3	ENST00000272418.2|MRPS5|ENSG00000144029.7|mitochondrial ribosomal protein S5
hg19_v2_chr6_-_99963252_99963264	0.175602	GLI3	ENST00000392738.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000327681.6|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000472914.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45
hg19_v2_chr18_-_31803169_31803169	0.174638	GLI3	ENST00000590712.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr17_+_40118805_40118900	0.174592	GLI3	ENST00000591072.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000587679.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000393888.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000441615.2|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr16_-_68057770_68057770	0.17438	GLI3	ENST00000332395.5|DDX28|ENSG00000182810.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
hg19_v2_chr1_-_157108130_157108173	0.17405	GLI3	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr1_+_10490127_10490159	0.174009	GLI3	ENST00000602787.1|APITD1|ENSG00000175279.17|apoptosis-inducing, TAF9-like domain 1 	ENST00000602296.1|APITD1|ENSG00000175279.17|apoptosis-inducing, TAF9-like domain 1 	ENST00000400900.2|APITD1-CORT|ENSG00000251503.3|APITD1-CORT readthrough
hg19_v2_chr20_+_43343886_43344020	0.172832	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr5_+_169931009_169931065	0.172678	GLI3	ENST00000328939.4|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1 	ENST00000390656.4|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr21_-_37432764_37432831	0.172163	GLI3	ENST00000399212.1|SETD4|ENSG00000185917.9|SET domain containing 4 	ENST00000446166.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chr10_-_50342053_50342053	0.172013	GLI3	ENST00000311787.5|FAM170B|ENSG00000172538.6|family with sequence similarity 170, member B
hg19_v2_chr11_-_77123065_77123109	0.171905	GLI3	ENST00000530617.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1
hg19_v2_chr8_+_6264113_6264191	0.171633	GLI3	ENST00000344683.5|MCPH1|ENSG00000147316.8|microcephalin 1 	ENST00000519480.1|MCPH1|ENSG00000147316.8|microcephalin 1 	ENST00000522905.1|MCPH1|ENSG00000147316.8|microcephalin 1
hg19_v2_chr9_-_139371533_139371567	0.1716	GLI3	ENST00000290037.6|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000431893.2|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000371706.3|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr13_+_115000384_115000458	0.170716	GLI3	ENST00000356221.3|CDC16|ENSG00000130177.10|cell division cycle 16 	ENST00000375310.1|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr12_-_13248732_13248744	0.169488	GLI3	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chrX_+_108779004_108779015	0.168601	GLI3	ENST00000218004.1|NXT2|ENSG00000101888.7|nuclear transport factor 2-like export factor 2
hg19_v2_chrX_-_9001351_9001351	0.168224	GLI3	ENST00000362066.3|FAM9B|ENSG00000177138.11|family with sequence similarity 9, member B
hg19_v2_chr19_-_44124019_44124030	0.167881	GLI3	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr16_+_89988259_89988354	0.167583	GLI3	ENST00000554444.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000556565.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr8_-_38008783_38008783	0.167034	GLI3	ENST00000276449.4|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
hg19_v2_chr16_-_68269971_68270059	0.166713	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr1_+_28655505_28655629	0.166175	GLI3	ENST00000373842.4|MED18|ENSG00000130772.9|mediator complex subunit 18 	ENST00000398997.2|MED18|ENSG00000130772.9|mediator complex subunit 18
hg19_v2_chr8_+_110374683_110374759	0.165262	GLI3	ENST00000378402.5|PKHD1L1|ENSG00000205038.7|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1
hg19_v2_chr8_-_98290087_98290197	0.165107	GLI3	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr17_+_31255165_31255228	0.165103	GLI3	ENST00000578289.1|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000439138.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr17_+_4736627_4736720	0.164994	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr1_-_155177677_155177739	0.164951	GLI3	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr1_+_207669613_207669686	0.164888	GLI3	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr17_-_80231557_80231607	0.163695	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr5_+_179159813_179159851	0.16247	GLI3	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr11_+_63273811_63273835	0.161599	GLI3	ENST00000340246.5|LGALS12|ENSG00000133317.10|lectin, galactoside-binding, soluble, 12
hg19_v2_chr11_+_64949158_64949216	0.161212	GLI3	ENST00000527739.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000526966.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533129.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000524773.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr11_-_35441524_35441578	0.161189	GLI3	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr3_+_124355944_124356002	0.160573	GLI3	ENST00000459915.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr3_+_128598433_128598511	0.160338	GLI3	ENST00000308982.7|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9 	ENST00000514336.1|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9
hg19_v2_chr16_+_89979826_89979826	0.160262	GLI3	ENST00000555427.1|MC1R|ENSG00000258839.2|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
hg19_v2_chr18_-_60987220_60987386	0.159789	GLI3	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr11_+_22214708_22214730	0.158236	GLI3	ENST00000324559.8|ANO5|ENSG00000171714.10|anoctamin 5
hg19_v2_chr11_+_89764274_89764274	0.157923	GLI3	ENST00000448984.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C 	ENST00000432771.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C
hg19_v2_chr20_+_57466461_57466482	0.157588	GLI3	ENST00000306090.10|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr5_+_80597419_80597448	0.157408	GLI3	ENST00000254037.2|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9 	ENST00000407610.3|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9 	ENST00000380199.5|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9
hg19_v2_chr6_+_133562704_133562733	0.156422	GLI3	ENST00000531901.1|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila)
hg19_v2_chrX_+_46940254_46940264	0.153749	GLI3	ENST00000336169.3|RGN|ENSG00000130988.8|regucalcin
hg19_v2_chr1_+_232940643_232940643	0.153547	GLI3	ENST00000418460.1|MAP10|ENSG00000212916.3|microtubule-associated protein 10
hg19_v2_chr17_+_7184986_7185076	0.153368	GLI3	ENST00000317370.8|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4 	ENST00000571308.1|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4
hg19_v2_chr4_-_46391367_46391436	0.153022	GLI3	ENST00000503806.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000356504.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000514090.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000506961.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr1_-_204380919_204380953	0.152659	GLI3	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr19_-_46318561_46318577	0.152039	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr16_-_89556942_89557020	0.151932	GLI3	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chrX_+_2984874_2984874	0.151819	GLI3	ENST00000359361.2|ARSF|ENSG00000062096.10|arylsulfatase F
hg19_v2_chr20_+_36888551_36888662	0.151804	GLI3	ENST00000418004.1|BPI|ENSG00000101425.8|bactericidal/permeability-increasing protein 	ENST00000451435.1|BPI|ENSG00000101425.8|bactericidal/permeability-increasing protein
hg19_v2_chr14_+_93118813_93118870	0.151729	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.11|Ras and Rab interactor 3
hg19_v2_chr16_+_616995_617041	0.151663	GLI3	ENST00000293874.2|PIGQ|ENSG00000007541.10|phosphatidylinositol glycan anchor biosynthesis, class Q 	ENST00000424439.2|NHLRC4|ENSG00000257108.1|NHL repeat containing 4 	ENST00000540585.1|NHLRC4|ENSG00000257108.1|NHL repeat containing 4 	ENST00000409527.2|PIGQ|ENSG00000007541.10|phosphatidylinositol glycan anchor biosynthesis, class Q
hg19_v2_chr19_+_45417504_45417589	0.151566	GLI3	ENST00000588750.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000588802.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr11_+_68228186_68228281	0.15153	GLI3	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr10_+_52750930_52750950	0.151421	GLI3	ENST00000401604.2|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr10_+_51565188_51565236	0.150918	GLI3	ENST00000430396.2|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4 	ENST00000374087.4|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4 	ENST00000414907.2|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4
hg19_v2_chr3_-_107596910_107596940	0.150739	GLI3	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr7_-_151217166_151217206	0.150709	GLI3	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr2_-_84686552_84686624	0.149264	GLI3	ENST00000393868.2|SUCLG1|ENSG00000163541.7|succinate-CoA ligase, alpha subunit
hg19_v2_chr9_-_130524695_130524736	0.148733	GLI3	ENST00000440630.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000429553.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr19_-_51456344_51456364	0.14839	GLI3	ENST00000336334.3|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5 	ENST00000593428.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr1_+_21766588_21766637	0.148309	GLI3	ENST00000454000.2|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318220.6|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318249.5|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3
hg19_v2_chr15_-_42565606_42565649	0.147971	GLI3	ENST00000307216.6|TMEM87A|ENSG00000103978.11|transmembrane protein 87A 	ENST00000448392.1|TMEM87A|ENSG00000103978.11|transmembrane protein 87A
hg19_v2_chr3_+_49591881_49591940	0.146687	GLI3	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr12_-_88535747_88535841	0.145095	GLI3	ENST00000309041.7|CEP290|ENSG00000198707.10|centrosomal protein 290kDa
hg19_v2_chr14_-_70655684_70655787	0.144981	GLI3	ENST00000356921.2|SLC8A3|ENSG00000100678.14|solute carrier family 8 (sodium/calcium exchanger), member 3 	ENST00000381269.2|SLC8A3|ENSG00000100678.14|solute carrier family 8 (sodium/calcium exchanger), member 3 	ENST00000357887.3|SLC8A3|ENSG00000100678.14|solute carrier family 8 (sodium/calcium exchanger), member 3
hg19_v2_chr14_+_103566665_103566665	0.144405	GLI3	ENST00000559116.1|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr22_+_50925213_50925305	0.144057	GLI3	ENST00000395733.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000216075.6|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000395732.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase
hg19_v2_chr5_-_44388899_44388918	0.143532	GLI3	ENST00000264664.4|FGF10|ENSG00000070193.4|fibroblast growth factor 10
hg19_v2_chr12_-_13248598_13248630	0.14308	GLI3	ENST00000337630.6|GSG1|ENSG00000111305.14|germ cell associated 1 	ENST00000545699.1|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr12_-_57882577_57882614	0.142054	GLI3	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr1_+_183774240_183774270	0.141911	GLI3	ENST00000360851.3|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr20_+_43343517_43343580	0.141868	GLI3	ENST00000372865.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr5_+_161275320_161275450	0.141867	GLI3	ENST00000437025.2|GABRA1|ENSG00000022355.10|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v2_chr14_-_107219365_107219365	0.140418	GLI3	ENST00000424969.2|IGHV3-74|ENSG00000224650.2|immunoglobulin heavy variable 3-74
hg19_v2_chr14_-_94856951_94856979	0.140334	GLI3	ENST00000553327.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000556955.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000557118.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000440909.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr11_-_64511789_64512061	0.140121	GLI3	ENST00000419843.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394430.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr15_+_78632666_78632701	0.140052	GLI3	ENST00000299529.6|CRABP1|ENSG00000166426.7|cellular retinoic acid binding protein 1
hg19_v2_chr11_-_73472096_73472204	0.139641	GLI3	ENST00000541588.1|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000336083.3|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000540771.1|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000310653.6|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family
hg19_v2_chr1_-_19186176_19186176	0.138835	GLI3	ENST00000375371.3|TAS1R2|ENSG00000179002.5|taste receptor, type 1, member 2
hg19_v2_chr4_+_76932326_76932370	0.138702	GLI3	ENST00000513353.1|ART3|ENSG00000156219.12|ADP-ribosyltransferase 3 	ENST00000341029.5|ART3|ENSG00000156219.12|ADP-ribosyltransferase 3
hg19_v2_chr10_+_104503727_104503748	0.138058	GLI3	ENST00000448841.1|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr1_-_110306526_110306553	0.138021	GLI3	ENST00000361965.4|EPS8L3|ENSG00000198758.6|EPS8-like 3 	ENST00000361852.4|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr11_-_73720276_73720286	0.137638	GLI3	ENST00000348534.4|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr7_-_112726393_112726567	0.13672	GLI3	ENST00000449591.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000449735.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000438062.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000424100.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr12_-_56122426_56122458	0.136361	GLI3	ENST00000551173.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr20_+_43343476_43343487	0.136342	GLI3	ENST00000372868.2|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr5_+_149340282_149340336	0.136041	GLI3	ENST00000286298.4|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr14_-_91976488_91976661	0.135988	GLI3	ENST00000554684.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000337238.4|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000428424.2|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000554511.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr12_+_119772502_119772522	0.135303	GLI3	ENST00000536742.1|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60 	ENST00000327554.2|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60
hg19_v2_chrX_-_151903184_151903211	0.134992	GLI3	ENST00000357916.4|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12 	ENST00000393869.3|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12
hg19_v2_chr8_-_42623924_42623935	0.134629	GLI3	ENST00000276410.2|CHRNA6|ENSG00000147434.4|cholinergic receptor, nicotinic, alpha 6 (neuronal)
hg19_v2_chr6_-_26032288_26032337	0.134417	GLI3	ENST00000244661.2|HIST1H3B|ENSG00000124693.2|histone cluster 1, H3b
hg19_v2_chr17_+_7323634_7323679	0.133548	GLI3	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr1_+_59762642_59762675	0.132729	GLI3	ENST00000371218.4|FGGY|ENSG00000172456.12|FGGY carbohydrate kinase domain containing 	ENST00000303721.7|FGGY|ENSG00000172456.12|FGGY carbohydrate kinase domain containing
hg19_v2_chr1_-_46152174_46152302	0.132587	GLI3	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr9_+_8858102_8858147	0.132216	GLI3	ENST00000447950.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1	ENST00000430766.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1
hg19_v2_chr1_-_85358850_85358906	0.131849	GLI3	ENST00000370611.3|LPAR3|ENSG00000171517.5|lysophosphatidic acid receptor 3
hg19_v2_chr2_+_232573222_232573249	0.131715	GLI3	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr1_-_243418621_243418648	0.131709	GLI3	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr11_+_64053005_64053171	0.131106	GLI3	ENST00000538032.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr19_+_1905365_1905417	0.131002	GLI3	ENST00000329478.2|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3 	ENST00000409472.1|SCAMP4|ENSG00000227500.5|secretory carrier membrane protein 4 	ENST00000602400.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr20_-_58508702_58508728	0.129636	GLI3	ENST00000357552.3|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2 	ENST00000425931.1|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2
hg19_v2_chr19_+_55385682_55385717	0.129601	GLI3	ENST00000391726.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr16_+_16043406_16043434	0.129375	GLI3	ENST00000399410.3|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000399408.2|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000346370.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000351154.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000345148.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000349029.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
hg19_v2_chr1_-_243418344_243418356	0.128878	GLI3	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr17_+_33448593_33448602	0.12849	GLI3	ENST00000158009.5|FNDC8|ENSG00000073598.5|fibronectin type III domain containing 8
hg19_v2_chr19_+_35820064_35820115	0.128421	GLI3	ENST00000341773.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600131.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000270311.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000595780.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000597916.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000593867.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600424.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000599811.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000536635.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000085219.5|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000544992.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000419549.2|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chr19_+_49999631_49999711	0.128147	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr13_+_49822041_49822184	0.127702	GLI3	ENST00000538056.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000251108.6|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000444959.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000429346.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1
hg19_v2_chr6_-_163148780_163148813	0.126893	GLI3	ENST00000366892.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366898.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366897.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366896.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase
hg19_v2_chr10_+_115312766_115312786	0.126808	GLI3	ENST00000351270.3|HABP2|ENSG00000148702.10|hyaluronan binding protein 2
hg19_v2_chr7_+_87563557_87563735	0.126421	GLI3	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr2_+_137523086_137523120	0.126133	GLI3	ENST00000409968.1|THSD7B|ENSG00000144229.7|thrombospondin, type I, domain containing 7B
hg19_v2_chr1_-_161014731_161014788	0.126102	GLI3	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr5_-_138739739_138739793	0.125363	GLI3	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr17_-_38574169_38574202	0.125283	GLI3	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr1_-_63153944_63154110	0.125006	GLI3	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr13_+_115000339_115000380	0.124857	GLI3	ENST00000360383.3|CDC16|ENSG00000130177.10|cell division cycle 16 	ENST00000375312.3|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr4_+_17812525_17812648	0.12373	GLI3	ENST00000251496.2|NCAPG|ENSG00000109805.5|non-SMC condensin I complex, subunit G
hg19_v2_chr16_+_88704978_88705001	0.123596	GLI3	ENST00000244241.4|IL17C|ENSG00000124391.4|interleukin 17C
hg19_v2_chr20_+_42984330_42984445	0.123344	GLI3	ENST00000316673.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609795.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000457232.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609262.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr3_-_12705600_12705725	0.123307	GLI3	ENST00000542177.1|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000442415.2|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000251849.4|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1
hg19_v2_chrX_-_148713440_148713568	0.122326	GLI3	ENST00000536359.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000316916.8|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr1_-_11007927_11007927	0.122308	GLI3	ENST00000468348.1|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr19_+_39989535_39989562	0.122218	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr12_-_13248562_13248596	0.121944	GLI3	ENST00000457134.2|GSG1|ENSG00000111305.14|germ cell associated 1 	ENST00000537302.1|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr14_-_94857004_94857030	0.121901	GLI3	ENST00000557492.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000448921.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000437397.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000355814.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000393088.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr18_+_13611763_13611815	0.121611	GLI3	ENST00000585931.1|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr1_-_85040090_85040168	0.121325	GLI3	ENST00000370630.5|CTBS|ENSG00000117151.8|chitobiase, di-N-acetyl-
hg19_v2_chr17_-_19651668_19651746	0.121109	GLI3	ENST00000494157.2|ALDH3A1|ENSG00000108602.13|aldehyde dehydrogenase 3 family, member A1 	ENST00000225740.6|ALDH3A1|ENSG00000108602.13|aldehyde dehydrogenase 3 family, member A1
hg19_v2_chr7_-_101212244_101212286	0.120918	GLI3	ENST00000451953.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007 	ENST00000434537.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007 	ENST00000437900.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007
hg19_v2_chr17_+_6899366_6899384	0.120753	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr3_-_125313934_125313934	0.120641	GLI3	ENST00000296220.5|OSBPL11|ENSG00000144909.7|oxysterol binding protein-like 11
hg19_v2_chr19_-_51456321_51456332	0.120529	GLI3	ENST00000391809.2|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr1_+_32671236_32671280	0.119956	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr11_+_14665263_14665274	0.119703	GLI3	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr15_-_64665911_64665980	0.119519	GLI3	ENST00000606793.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000561349.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000560278.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein
hg19_v2_chr17_+_65040678_65040733	0.119052	GLI3	ENST00000226021.3|CACNG1|ENSG00000108878.3|calcium channel, voltage-dependent, gamma subunit 1
hg19_v2_chrX_+_23682379_23682401	0.118934	GLI3	ENST00000379349.1|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr19_+_45417921_45417970	0.118251	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr15_-_43877062_43877090	0.117821	GLI3	ENST00000381885.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1 	ENST00000396923.3|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
hg19_v2_chr6_-_43478239_43478424	0.117435	GLI3	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr17_-_39203519_39203568	0.117348	GLI3	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr11_-_414948_415017	0.116917	GLI3	ENST00000530494.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528209.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000431843.2|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528058.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chr20_-_44420507_44420547	0.116527	GLI3	ENST00000243938.4|WFDC3|ENSG00000124116.14|WAP four-disulfide core domain 3
hg19_v2_chr19_-_12476443_12476467	0.116062	GLI3	ENST00000242804.4|ZNF442|ENSG00000198342.5|zinc finger protein 442 	ENST00000438182.1|ZNF442|ENSG00000198342.5|zinc finger protein 442
hg19_v2_chr12_+_104609550_104609563	0.114613	GLI3	ENST00000525566.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000429002.2|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr16_-_89043605_89043625	0.114067	GLI3	ENST00000268679.4|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr1_+_24117627_24117659	0.11392	GLI3	ENST00000400061.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr6_-_34073743_34073761	0.112831	GLI3	ENST00000609222.1|GRM4|ENSG00000124493.9|glutamate receptor, metabotropic 4
hg19_v2_chr19_+_5455421_5455447	0.112519	GLI3	ENST00000222033.4|ZNRF4|ENSG00000105428.4|zinc and ring finger 4
hg19_v2_chr5_-_157002749_157002768	0.112238	GLI3	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr16_-_89043377_89043406	0.111631	GLI3	ENST00000436887.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000448839.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000360302.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chrX_-_8769378_8769424	0.111261	GLI3	ENST00000543214.1|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A 	ENST00000381003.3|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A
hg19_v2_chr5_-_66492562_66492635	0.109799	GLI3	ENST00000256447.4|CD180|ENSG00000134061.4|CD180 molecule
hg19_v2_chr2_+_264869_264906	0.109546	GLI3	ENST00000272067.6|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000272065.5|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000407983.3|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr10_+_52751010_52751118	0.108677	GLI3	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr6_-_99963286_99963365	0.108531	GLI3	ENST00000369233.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000500704.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000329966.6|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45
hg19_v2_chr19_+_45418067_45418126	0.108358	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr10_+_71389983_71390040	0.107688	GLI3	ENST00000373279.4|C10orf35|ENSG00000171224.7|chromosome 10 open reading frame 35
hg19_v2_chr20_-_22565101_22565223	0.10768	GLI3	ENST00000419308.2|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr8_-_145013711_145013786	0.107217	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr16_+_68573116_68573228	0.106712	GLI3	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr1_+_25664408_25664408	0.106598	GLI3	ENST00000374358.4|TMEM50A|ENSG00000183726.6|transmembrane protein 50A
hg19_v2_chr2_+_228736335_228736397	0.105839	GLI3	ENST00000440997.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1 	ENST00000545118.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr2_+_119981384_119981446	0.105308	GLI3	ENST00000393108.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000354888.5|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000450943.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393110.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393106.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000409811.1|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393107.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase
hg19_v2_chr14_-_50778872_50778928	0.105034	GLI3	ENST00000555610.1|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase 	ENST00000261699.4|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase
hg19_v2_chr13_+_100258907_100258953	0.104489	GLI3	ENST00000376355.3|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000376360.1|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000444838.2|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000376354.1|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000339105.4|CLYBL|ENSG00000125246.11|citrate lyase beta like
hg19_v2_chrY_+_25365594_25365701	0.10407	GLI3	ENST00000382449.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382440.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382306.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382434.3|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000449947.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382294.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382433.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382424.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000400493.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382431.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2
hg19_v2_chr8_+_16884740_16884804	0.104017	GLI3	ENST00000318063.5|MICU3|ENSG00000155970.7|mitochondrial calcium uptake family, member 3
hg19_v2_chr9_+_140125209_140125209	0.10391	GLI3	ENST00000538474.1|SLC34A3|ENSG00000198569.5|solute carrier family 34 (type II sodium/phosphate contransporter), member 3
hg19_v2_chr16_+_67063142_67063153	0.103688	GLI3	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr16_+_68573640_68573698	0.102915	GLI3	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr10_-_45496336_45496379	0.102694	GLI3	ENST00000298298.1|C10orf25|ENSG00000165511.4|chromosome 10 open reading frame 25
hg19_v2_chr11_-_65150103_65150148	0.102128	GLI3	ENST00000294187.6|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000398802.1|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000360662.3|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000377152.2|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000530936.1|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45
hg19_v2_chr11_-_118927816_118927868	0.101917	GLI3	ENST00000534233.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532752.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000525859.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000404233.3|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532421.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000543287.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000527310.2|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000529972.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr10_+_51565108_51565167	0.101414	GLI3	ENST00000438493.1|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4 	ENST00000452682.1|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4
hg19_v2_chr6_+_26204825_26204858	0.101283	GLI3	ENST00000360441.4|HIST1H4E|ENSG00000198518.5|histone cluster 1, H4e
hg19_v2_chr17_-_2207062_2207116	0.100986	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr2_-_175351744_175351828	0.100951	GLI3	ENST00000295500.4|GPR155|ENSG00000163328.9|G protein-coupled receptor 155 	ENST00000392552.2|GPR155|ENSG00000163328.9|G protein-coupled receptor 155 	ENST00000392551.2|GPR155|ENSG00000163328.9|G protein-coupled receptor 155
hg19_v2_chr16_-_11945370_11945442	0.100942	GLI3	ENST00000573251.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000355674.5|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000542106.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000571133.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1
hg19_v2_chr19_+_54705025_54705034	0.10032	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr19_-_54618650_54618688	0.099132	GLI3	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr7_+_66386204_66386249	0.0990846	GLI3	ENST00000341567.4|TMEM248|ENSG00000106609.12|transmembrane protein 248 	ENST00000607045.1|TMEM248|ENSG00000106609.12|transmembrane protein 248
hg19_v2_chr20_-_39946237_39946356	0.099009	GLI3	ENST00000441102.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000559234.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr22_-_41258074_41258130	0.0987367	GLI3	ENST00000307221.4|DNAJB7|ENSG00000172404.4|DnaJ (Hsp40) homolog, subfamily B, member 7
hg19_v2_chr17_-_46692287_46692317	0.0986921	GLI3	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chrX_-_108976521_108976632	0.0984043	GLI3	ENST00000469796.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000502391.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000508092.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000340800.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000348502.6|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr5_+_6633456_6633529	0.0983245	GLI3	ENST00000274192.5|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr12_-_54778471_54778528	0.0982046	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000394313.2|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000547210.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr2_+_220379052_220379131	0.0976988	GLI3	ENST00000347842.3|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4 	ENST00000358078.4|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4
hg19_v2_chr9_+_34458771_34458850	0.0976177	GLI3	ENST00000437363.1|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1 	ENST00000242317.4|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1
hg19_v2_chr22_+_38349724_38349734	0.0970409	GLI3	ENST00000470701.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr7_-_100860851_100860954	0.0966348	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chr19_-_46318486_46318531	0.096322	GLI3	ENST00000597055.1|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr16_+_88923494_88923576	0.0952756	GLI3	ENST00000567895.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000301021.3|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000565504.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000567312.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000568583.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000561840.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like
hg19_v2_chr1_+_209941942_209941964	0.095119	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr1_-_110306562_110306649	0.0946871	GLI3	ENST00000369805.3|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr1_+_43735678_43735696	0.0944636	GLI3	ENST00000432792.2|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr5_+_140019004_140019068	0.0940748	GLI3	ENST00000394671.3|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6 	ENST00000511410.1|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6 	ENST00000537378.1|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6
hg19_v2_chr16_+_66400533_66400545	0.0939112	GLI3	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr3_+_141496990_141496990	0.0935437	GLI3	ENST00000264952.2|GRK7|ENSG00000114124.2|G protein-coupled receptor kinase 7
hg19_v2_chr12_-_112819896_112819896	0.0934518	GLI3	ENST00000377560.5|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4 	ENST00000430131.2|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4 	ENST00000550722.1|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4 	ENST00000550724.1|HECTD4|ENSG00000173064.6|HECT domain containing E3 ubiquitin protein ligase 4
hg19_v2_chr8_+_21899898_21899937	0.0930368	GLI3	ENST00000518533.1|FGF17|ENSG00000158815.6|fibroblast growth factor 17 	ENST00000359441.3|FGF17|ENSG00000158815.6|fibroblast growth factor 17
hg19_v2_chr15_+_85923856_85923987	0.0925675	GLI3	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr1_-_155942086_155942145	0.0912916	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr9_-_35112376_35112395	0.09071	GLI3	ENST00000488109.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr5_-_43483929_43484002	0.0906586	GLI3	ENST00000500337.2|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000506860.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000510130.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000397080.3|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000512085.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28
hg19_v2_chr14_-_51561784_51561854	0.090242	GLI3	ENST00000360392.4|TRIM9|ENSG00000100505.9|tripartite motif containing 9
hg19_v2_chr7_+_2636522_2636546	0.0901566	GLI3	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr22_+_31489344_31489371	0.0894205	GLI3	ENST00000404574.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr12_-_11463353_11463372	0.0879133	GLI3	ENST00000279575.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000535904.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000445719.2|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4
hg19_v2_chr1_+_150521876_150521901	0.0877394	GLI3	ENST00000369041.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4 	ENST00000538795.1|AL356356.1|ENSG00000225996.2|Protein LOC100996516  	ENST00000271643.4|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr3_-_127872625_127872757	0.087639	GLI3	ENST00000464873.1|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1
hg19_v2_chr14_+_50291993_50291993	0.0873387	GLI3	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr11_+_66247478_66247503	0.0872266	GLI3	ENST00000531863.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3 	ENST00000532677.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3
hg19_v2_chr8_-_145653885_145653937	0.0865894	GLI3	ENST00000531032.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000292510.4|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000377348.2|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000530790.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000533806.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr5_+_175487692_175487692	0.0859102	GLI3	ENST00000510151.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr19_+_8943074_8943074	0.0858271	GLI3	ENST00000595891.1|MBD3L1|ENSG00000170948.3|methyl-CpG binding domain protein 3-like 1
hg19_v2_chr3_-_12200851_12200885	0.0855541	GLI3	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr16_-_55867146_55867249	0.0853293	GLI3	ENST00000422046.2|CES1|ENSG00000198848.8|carboxylesterase 1
hg19_v2_chr19_-_45926739_45926863	0.0851547	GLI3	ENST00000589381.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000591636.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000013807.5|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000592023.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
hg19_v2_chr11_-_3400442_3400453	0.0847397	GLI3	ENST00000429541.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000532539.1|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr3_+_38035610_38035687	0.0838819	GLI3	ENST00000465644.1|VILL|ENSG00000136059.10|villin-like
hg19_v2_chr3_+_42190714_42190787	0.083748	GLI3	ENST00000449246.1|TRAK1|ENSG00000182606.10|trafficking protein, kinesin binding 1
hg19_v2_chr19_-_43709817_43709926	0.0836489	GLI3	ENST00000433626.2|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4 	ENST00000405312.3|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4
hg19_v2_chr6_-_30815936_30816035	0.083619	GLI3	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr2_-_17935059_17935102	0.0822696	GLI3	ENST00000448223.2|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000381272.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000351948.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr7_+_150065278_150065369	0.0821584	GLI3	ENST00000519397.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000479668.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000540729.1|REPIN1|ENSG00000214022.7|replication initiator 1
hg19_v2_chr3_+_15468862_15468909	0.0817567	GLI3	ENST00000396842.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chr14_+_103566481_103566481	0.0810428	GLI3	ENST00000380069.3|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr19_+_55385731_55385746	0.081018	GLI3	ENST00000469767.1|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000355524.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391725.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000345937.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000353758.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000359272.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391723.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391724.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr17_-_34808047_34808104	0.0802418	GLI3	ENST00000592614.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000591542.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000400684.4|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000330458.7|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000341264.6|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000592987.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G
hg19_v2_chr19_-_40896081_40896094	0.080116	GLI3	ENST00000291823.2|HIPK4|ENSG00000160396.8|homeodomain interacting protein kinase 4
hg19_v2_chr17_-_4464081_4464113	0.0800212	GLI3	ENST00000574154.1|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6
hg19_v2_chr9_+_131102925_131103015	0.0795386	GLI3	ENST00000372870.1|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4 	ENST00000300456.4|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4
hg19_v2_chr8_+_98656336_98656535	0.079506	GLI3	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr22_+_26565440_26565624	0.0794759	GLI3	ENST00000404234.3|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000529632.2|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000360929.3|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000248933.6|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000343706.4|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like
hg19_v2_chr1_+_43735646_43735665	0.0792674	GLI3	ENST00000439858.1|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr20_-_22566089_22566097	0.0792604	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chrX_-_119077695_119077757	0.0787722	GLI3	ENST00000371410.3|NKAP|ENSG00000101882.5|NFKB activating protein
hg19_v2_chr7_+_87563458_87563489	0.0786564	GLI3	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr8_+_124194875_124194921	0.0778113	GLI3	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr9_+_135037334_135037450	0.077782	GLI3	ENST00000393229.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000360670.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000393228.4|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000372179.3|NTNG2|ENSG00000196358.6|netrin G2
hg19_v2_chr1_-_157108266_157108347	0.0777631	GLI3	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr5_-_180668605_180668649	0.076589	GLI3	ENST00000504128.1|GNB2L1|ENSG00000204628.7|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
hg19_v2_chr16_-_2031464_2031550	0.0765598	GLI3	ENST00000356120.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1 	ENST00000354249.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1
hg19_v2_chr14_-_91976794_91976871	0.0751974	GLI3	ENST00000555462.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr20_+_57466357_57466419	0.0747173	GLI3	ENST00000371095.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000371085.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000354359.7|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000265620.7|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr21_-_35831880_35831902	0.073531	GLI3	ENST00000399289.3|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1 	ENST00000432085.1|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1
hg19_v2_chr10_+_135192695_135192780	0.0732355	GLI3	ENST00000368539.4|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000278060.5|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000357296.3|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino)
hg19_v2_chr12_-_82152444_82152475	0.072992	GLI3	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr1_-_62785054_62785125	0.0727574	GLI3	ENST00000371153.4|KANK4|ENSG00000132854.14|KN motif and ankyrin repeat domains 4
hg19_v2_chr10_-_81965307_81965351	0.0723818	GLI3	ENST00000537102.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000372231.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000438331.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000422982.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000360615.4|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000265447.4|ANXA11|ENSG00000122359.13|annexin A11
hg19_v2_chr11_+_117103441_117103452	0.0722489	GLI3	ENST00000531287.1|RNF214|ENSG00000167257.6|ring finger protein 214 	ENST00000531452.1|RNF214|ENSG00000167257.6|ring finger protein 214
hg19_v2_chr17_-_27139411_27139498	0.071543	GLI3	ENST00000452648.3|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B
hg19_v2_chr14_+_21423611_21423665	0.0713274	GLI3	ENST00000304625.2|RNASE2|ENSG00000169385.2|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)
hg19_v2_chr1_-_41487415_41487426	0.0709385	GLI3	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr1_+_209757051_209757074	0.0702385	GLI3	ENST00000009105.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000423146.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000361322.2|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG
hg19_v2_chr12_+_69186125_69186125	0.0700289	GLI3	ENST00000399333.3|AC124890.1|ENSG00000251695.2|HCG1774533, isoform CRA_a; PRO2268; Uncharacterized protein
hg19_v2_chr1_+_240255166_240255197	0.069989	GLI3	ENST00000319653.9|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr6_-_28367510_28367537	0.0693765	GLI3	ENST00000361028.1|ZSCAN12|ENSG00000158691.10|zinc finger and SCAN domain containing 12
hg19_v2_chr6_-_29455738_29455738	0.0690261	GLI3	ENST00000377127.3|MAS1L|ENSG00000204687.3|MAS1 oncogene-like
hg19_v2_chr16_-_22012419_22012452	0.0679976	GLI3	ENST00000537222.2|PDZD9|ENSG00000155714.9|PDZ domain containing 9 	ENST00000424898.2|PDZD9|ENSG00000155714.9|PDZ domain containing 9 	ENST00000286143.6|PDZD9|ENSG00000155714.9|PDZ domain containing 9
hg19_v2_chr5_-_39270725_39270771	0.0679095	GLI3	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr11_-_2444242_2444275	0.066762	GLI3	ENST00000533881.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000533060.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000528453.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000155858.6|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000452833.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5
hg19_v2_chr3_-_39234074_39234095	0.0666597	GLI3	ENST00000340369.3|XIRP1|ENSG00000168334.8|xin actin-binding repeat containing 1 	ENST00000421646.1|XIRP1|ENSG00000168334.8|xin actin-binding repeat containing 1 	ENST00000396251.1|XIRP1|ENSG00000168334.8|xin actin-binding repeat containing 1
hg19_v2_chr19_+_39989580_39989608	0.0664823	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr13_+_115000521_115000536	0.0651542	GLI3	ENST00000252457.5|CDC16|ENSG00000130177.10|cell division cycle 16 	ENST00000375308.1|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr12_+_6602517_6602559	0.0642265	GLI3	ENST00000315579.5|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2 	ENST00000539714.1|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2
hg19_v2_chr3_-_155011483_155011564	0.0631443	GLI3	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr15_-_27184664_27184686	0.0618972	GLI3	ENST00000541819.2|GABRB3|ENSG00000166206.9|gamma-aminobutyric acid (GABA) A receptor, beta 3
hg19_v2_chr11_+_73003824_73003859	0.0614448	GLI3	ENST00000538328.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr11_-_8615507_8615555	0.0611627	GLI3	ENST00000431279.2|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000418597.1|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr16_+_57728701_57728748	0.0611067	GLI3	ENST00000569375.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000360716.3|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000569167.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000394337.4|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000563126.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000336825.8|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135
hg19_v2_chr3_-_195538760_195538775	0.060138	GLI3	ENST00000475231.1|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr2_+_231921574_231921639	0.0601291	GLI3	ENST00000308696.6|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000373635.4|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000440838.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000409643.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
hg19_v2_chr19_-_35992780_35992815	0.0594617	GLI3	ENST00000593342.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000601650.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000408915.2|DMKN|ENSG00000161249.16|dermokine
hg19_v2_chr3_+_156008809_156008839	0.0592903	GLI3	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr15_+_45422178_45422216	0.0590289	GLI3	ENST00000389037.3|DUOX1|ENSG00000137857.13|dual oxidase 1 	ENST00000558322.1|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr8_-_42065187_42065242	0.0588513	GLI3	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr7_+_150498783_150498890	0.0588196	GLI3	ENST00000475536.1|TMEM176A|ENSG00000002933.3|transmembrane protein 176A 	ENST00000468689.1|TMEM176A|ENSG00000002933.3|transmembrane protein 176A
hg19_v2_chr21_-_45079341_45079400	0.0583812	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chr12_+_12509990_12510042	0.0582093	GLI3	ENST00000542728.1|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr2_+_201170770_201170882	0.0579892	GLI3	ENST00000409988.3|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409385.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr15_-_65321943_65321984	0.0578524	GLI3	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr15_+_41186609_41186636	0.0577409	GLI3	ENST00000220509.5|VPS18|ENSG00000104142.6|vacuolar protein sorting 18 homolog (S. cerevisiae)
hg19_v2_chr15_-_31453359_31453476	0.0575599	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr22_+_21319396_21319465	0.0575394	GLI3	ENST00000399167.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000399163.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000441376.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3
hg19_v2_chr16_+_89787937_89787971	0.0570983	GLI3	ENST00000443381.2|ZNF276|ENSG00000158805.7|zinc finger protein 276
hg19_v2_chr1_-_1243252_1243318	0.0569811	GLI3	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr19_-_23578220_23578362	0.0566719	GLI3	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr2_+_97481974_97482015	0.0561211	GLI3	ENST00000377060.3|CNNM3|ENSG00000168763.11|cyclin M3 	ENST00000305510.3|CNNM3|ENSG00000168763.11|cyclin M3
hg19_v2_chr17_+_39388700_39388715	0.0558525	GLI3	ENST00000411528.2|KRTAP9-3|ENSG00000204873.3|keratin associated protein 9-3
hg19_v2_chr1_+_1115056_1115079	0.0556737	GLI3	ENST00000379288.3|TTLL10|ENSG00000162571.9|tubulin tyrosine ligase-like family, member 10
hg19_v2_chr4_+_140374961_140375016	0.0554548	GLI3	ENST00000305626.5|RAB33B|ENSG00000172007.5|RAB33B, member RAS oncogene family
hg19_v2_chr10_+_46997926_46997926	0.0553809	GLI3	ENST00000374314.4|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr12_+_123464607_123464873	0.0547248	GLI3	ENST00000543566.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000315580.5|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000542099.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000392435.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000413381.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000426960.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000453766.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4
hg19_v2_chr17_+_38333263_38333368	0.0545592	GLI3	ENST00000456989.2|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000543876.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000544503.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000264644.6|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000538884.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1
hg19_v2_chr1_+_55464600_55464608	0.0544408	GLI3	ENST00000371265.4|BSND|ENSG00000162399.6|Bartter syndrome, infantile, with sensorineural deafness (Barttin)
hg19_v2_chr3_+_16926441_16926463	0.054435	GLI3	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr4_-_6675550_6675580	0.0543106	GLI3	ENST00000513179.1|RP11-539L10.3|ENSG00000251580.1|RP11-539L10.3	ENST00000515205.1|RP11-539L10.3|ENSG00000251580.1|RP11-539L10.3
hg19_v2_chr19_-_59066452_59066496	0.0539347	GLI3	ENST00000312547.2|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr1_-_47407111_47407128	0.0537959	GLI3	ENST00000371904.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr11_-_36310958_36310999	0.0532954	GLI3	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr19_-_55549624_55549639	0.0528071	GLI3	ENST00000417454.1|GP6|ENSG00000088053.7|glycoprotein VI (platelet) 	ENST00000310373.3|GP6|ENSG00000088053.7|glycoprotein VI (platelet) 	ENST00000333884.2|GP6|ENSG00000088053.7|glycoprotein VI (platelet)
hg19_v2_chr2_+_60983361_60983418	0.0527067	GLI3	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr11_-_73720122_73720136	0.0515772	GLI3	ENST00000426995.2|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr2_+_113479063_113479063	0.0510494	GLI3	ENST00000327581.4|NT5DC4|ENSG00000144130.7|5'-nucleotidase domain containing 4
hg19_v2_chr6_+_52285131_52285182	0.050999	GLI3	ENST00000433625.2|EFHC1|ENSG00000096093.10|EF-hand domain (C-terminal) containing 1
hg19_v2_chr11_-_18956556_18956556	0.0505063	GLI3	ENST00000302797.3|MRGPRX1|ENSG00000170255.6|MAS-related GPR, member X1
hg19_v2_chr19_+_41816053_41816178	0.0504007	GLI3	ENST00000269967.3|CCDC97|ENSG00000142039.3|coiled-coil domain containing 97
hg19_v2_chr1_-_104238912_104238912	0.0502001	GLI3	ENST00000330330.5|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr7_+_100187196_100187252	0.0497587	GLI3	ENST00000468962.1|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000427939.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr3_+_50388126_50388328	0.0497568	GLI3	ENST00000425346.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000424512.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000232508.5|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000418577.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000606589.1|XXcos-LUCA11.5|ENSG00000272104.1|Uncharacterized protein
hg19_v2_chr8_+_140943416_140943416	0.0490255	GLI3	ENST00000507535.3|C8orf17|ENSG00000250733.3|chromosome 8 open reading frame 17
hg19_v2_chr1_-_40254482_40254550	0.0488812	GLI3	ENST00000397360.2|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b 	ENST00000372827.3|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b
hg19_v2_chrX_-_47518527_47518587	0.0487311	GLI3	ENST00000333119.3|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr19_-_16284286_16284336	0.0486476	GLI3	ENST00000379859.3|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3 	ENST00000269878.4|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3
hg19_v2_chr11_-_12030629_12030644	0.0484032	GLI3	ENST00000396505.2|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3
hg19_v2_chr5_+_65892174_65892229	0.0483463	GLI3	ENST00000404260.3|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000403625.2|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000406374.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr11_+_60739249_60739338	0.0482016	GLI3	ENST00000542157.1|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000433107.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000452451.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000352009.5|CD6|ENSG00000013725.10|CD6 molecule
hg19_v2_chr12_+_57984965_57985059	0.0481651	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr12_-_56122220_56122266	0.0473535	GLI3	ENST00000552692.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr3_+_100328433_100328459	0.0471269	GLI3	ENST00000273352.3|GPR128|ENSG00000144820.3|G protein-coupled receptor 128
hg19_v2_chr17_-_40540377_40540481	0.0469683	GLI3	ENST00000404395.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000389272.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000585517.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000588065.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr17_-_7307358_7307456	0.0463003	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr1_+_210111570_210111603	0.0460582	GLI3	ENST00000367019.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000472886.1|SYT14|ENSG00000143469.12|synaptotagmin XIV
hg19_v2_chr6_+_46620705_46620732	0.045968	GLI3	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr9_+_72435709_72435743	0.0458912	GLI3	ENST00000377197.3|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135 	ENST00000527647.1|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135
hg19_v2_chr1_-_1310530_1310603	0.0456862	GLI3	ENST00000338370.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000321751.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000378853.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr16_+_765092_765169	0.0454671	GLI3	ENST00000568223.2|METRN|ENSG00000103260.4|meteorin, glial cell differentiation regulator
hg19_v2_chr16_+_215965_215984	0.0452804	GLI3	ENST00000356815.3|HBM|ENSG00000206177.2|hemoglobin, mu
hg19_v2_chr17_-_7137582_7137637	0.0452372	GLI3	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr17_-_39274606_39274626	0.0451022	GLI3	ENST00000391413.2|KRTAP4-11|ENSG00000212721.2|keratin associated protein 4-11
hg19_v2_chr8_-_21771214_21771371	0.0449479	GLI3	ENST00000276420.4|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr11_-_34937858_34937944	0.0449422	GLI3	ENST00000278359.5|APIP|ENSG00000149089.8|APAF1 interacting protein
hg19_v2_chr4_+_3344141_3344178	0.0448926	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chrY_-_25345070_25345241	0.0448069	GLI3	ENST00000382510.4|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000426000.2|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000540248.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000405239.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1
hg19_v2_chr7_-_156433195_156433348	0.0440926	GLI3	ENST00000333319.6|C7orf13|ENSG00000244291.1|chromosome 7 open reading frame 13
hg19_v2_chr3_+_195384929_195384964	0.0438656	GLI3	ENST00000457233.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539252.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000452844.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000429897.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539717.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000453324.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000445430.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000414625.2|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000425425.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969
hg19_v2_chr2_+_171673072_171673225	0.0437796	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr3_-_48470838_48470872	0.0437775	GLI3	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr5_-_102455801_102455855	0.0437576	GLI3	ENST00000508629.1|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1 	ENST00000399004.2|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1
hg19_v2_chr11_+_44117741_44117798	0.0432388	GLI3	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr14_+_105046094_105046111	0.042831	GLI3	ENST00000331952.2|C14orf180|ENSG00000184601.6|chromosome 14 open reading frame 180
hg19_v2_chr12_+_52282001_52282021	0.042828	GLI3	ENST00000340970.4|ANKRD33|ENSG00000167612.8|ankyrin repeat domain 33
hg19_v2_chr14_-_39572279_39572340	0.0427862	GLI3	ENST00000536508.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae)
hg19_v2_chr9_-_113800341_113800373	0.0426012	GLI3	ENST00000358883.4|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr10_+_50887683_50887735	0.0426004	GLI3	ENST00000374113.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374111.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374112.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000535836.1|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53
hg19_v2_chr15_+_45422131_45422172	0.0425314	GLI3	ENST00000321429.4|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr9_+_139871948_139871968	0.041959	GLI3	ENST00000224167.2|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000457950.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371625.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371623.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chr1_-_182573514_182573543	0.0416487	GLI3	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr3_+_10068095_10068183	0.0415936	GLI3	ENST00000287647.3|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383807.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383806.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000419585.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2
hg19_v2_chr12_-_10542617_10542647	0.0409569	GLI3	ENST00000240618.6|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr16_-_75300679_75300808	0.0408506	GLI3	ENST00000420641.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr2_+_192110199_192110254	0.0406348	GLI3	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr13_+_52598827_52598827	0.0406176	GLI3	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chrX_+_134166333_134166371	0.0402525	GLI3	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr1_+_207226574_207226656	0.0400053	GLI3	ENST00000367080.3|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 	ENST00000367079.2|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
hg19_v2_chr8_-_67525473_67525518	0.0399546	GLI3	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr5_+_150226085_150226085	0.0394758	GLI3	ENST00000522154.1|IRGM|ENSG00000237693.4|immunity-related GTPase family, M
hg19_v2_chr17_+_40172097_40172175	0.0393137	GLI3	ENST00000393880.1|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000393881.3|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000462043.2|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000449471.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000316082.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2
hg19_v2_chr2_+_232826211_232826293	0.0392198	GLI3	ENST00000325385.7|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2 	ENST00000360410.4|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2
hg19_v2_chr16_+_28996364_28996381	0.039119	GLI3	ENST00000564277.1|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chr3_+_101818088_101818088	0.0390701	GLI3	ENST00000491959.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr19_-_54619006_54619055	0.038303	GLI3	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr2_-_71047727_71047733	0.0380804	GLI3	ENST00000272367.2|CLEC4F|ENSG00000152672.3|C-type lectin domain family 4, member F
hg19_v2_chr1_+_20617362_20617412	0.0376499	GLI3	ENST00000375079.2|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1 	ENST00000289815.8|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1 	ENST00000375083.4|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1 	ENST00000289825.4|VWA5B1|ENSG00000158816.11|von Willebrand factor A domain containing 5B1
hg19_v2_chrX_-_48693955_48694035	0.0375928	GLI3	ENST00000218230.5|PCSK1N|ENSG00000102109.7|proprotein convertase subtilisin/kexin type 1 inhibitor
hg19_v2_chr19_-_22193706_22193721	0.0374326	GLI3	ENST00000597040.1|ZNF208|ENSG00000160321.10|zinc finger protein 208
hg19_v2_chr3_-_108476231_108476257	0.0374192	GLI3	ENST00000295755.6|RETNLB|ENSG00000163515.6|resistin like beta
hg19_v2_chr16_+_29984962_29984962	0.0373766	GLI3	ENST00000308893.4|TAOK2|ENSG00000149930.13|TAO kinase 2
hg19_v2_chr2_-_233877912_233877982	0.0370702	GLI3	ENST00000264051.3|NGEF|ENSG00000066248.10|neuronal guanine nucleotide exchange factor
hg19_v2_chr14_+_23776167_23776189	0.0366812	GLI3	ENST00000554635.1|BCL2L2|ENSG00000129473.5|BCL2-like 2 	ENST00000557008.1|BCL2L2-PABPN1|ENSG00000258643.1|BCL2L2-PABPN1 readthrough
hg19_v2_chr22_-_38349552_38349676	0.0363298	GLI3	ENST00000422191.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000249079.2|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000418863.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403305.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403026.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23
hg19_v2_chr8_-_130587254_130587271	0.0362598	GLI3	ENST00000523151.1|CCDC26|ENSG00000229140.4|coiled-coil domain containing 26
hg19_v2_chr12_+_50355647_50355661	0.0361779	GLI3	ENST00000293599.6|AQP5|ENSG00000161798.6|aquaporin 5
hg19_v2_chr5_-_149792295_149792332	0.0359401	GLI3	ENST00000518797.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000524315.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000009530.7|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000377795.3|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain
hg19_v2_chr17_-_27278445_27278624	0.0353125	GLI3	ENST00000268756.3|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584685.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr2_-_68694390_68694434	0.0352554	GLI3	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chr3_+_63897605_63897797	0.0350818	GLI3	ENST00000487717.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr14_+_27342334_27342369	0.0348788	GLI3	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr19_-_59066327_59066389	0.0348636	GLI3	ENST00000596708.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000601220.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000597848.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr2_+_187350973_187351072	0.0345262	GLI3	ENST00000544130.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr17_-_40540484_40540537	0.0344917	GLI3	ENST00000588969.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr17_-_36348610_36348666	0.0344352	GLI3	ENST00000339023.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3 	ENST00000354664.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr19_+_35759968_35760042	0.0344341	GLI3	ENST00000222305.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000595068.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000379134.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000594064.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000598058.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting
hg19_v2_chr3_-_15469006_15469043	0.0339572	GLI3	ENST00000443029.1|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383790.3|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383789.5|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr3_-_14166316_14166383	0.033776	GLI3	ENST00000396914.3|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4 	ENST00000295767.5|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4
hg19_v2_chr1_+_26605618_26605667	0.0335072	GLI3	ENST00000270792.5|SH3BGRL3|ENSG00000142669.9|SH3 domain binding glutamic acid-rich protein like 3
hg19_v2_chr17_-_34757039_34757050	0.0332816	GLI3	ENST00000455054.2|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000308078.7|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr1_+_92414928_92414944	0.0330738	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr14_-_21056121_21056206	0.0329113	GLI3	ENST00000557105.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398008.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000555841.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000443456.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000432835.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000557503.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398009.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000554842.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr11_-_77122928_77123045	0.032343	GLI3	ENST00000528203.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000528592.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000528633.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000529248.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1
hg19_v2_chrX_-_38186811_38186826	0.03234	GLI3	ENST00000318842.7|RPGR|ENSG00000156313.8|retinitis pigmentosa GTPase regulator
hg19_v2_chr14_+_102027688_102027833	0.0319701	GLI3	ENST00000510508.4|DIO3|ENSG00000197406.6|deiodinase, iodothyronine, type III 	ENST00000359323.3|DIO3|ENSG00000197406.6|deiodinase, iodothyronine, type III
hg19_v2_chr3_-_128840604_128840993	0.0313315	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr2_-_242842587_242842602	0.0313257	GLI3	ENST00000404031.1|AC131097.4|ENSG00000216921.3|Protein LOC285095
hg19_v2_chr11_+_1968508_1968589	0.0312059	GLI3	ENST00000397298.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000381519.1|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000397297.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000381514.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000397294.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23
hg19_v2_chr3_-_196756646_196756725	0.0309521	GLI3	ENST00000439320.1|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296351.4|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296350.5|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
hg19_v2_chr1_+_234509413_234509447	0.0307977	GLI3	ENST00000366613.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) 	ENST00000366612.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae)
hg19_v2_chr19_-_16653226_16653275	0.0301497	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr2_+_11273179_11273261	0.0301075	GLI3	ENST00000381585.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50 	ENST00000405022.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50
hg19_v2_chr1_-_41487383_41487402	0.0297606	GLI3	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chrX_+_15525426_15525441	0.029571	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr7_+_150498610_150498659	0.0284702	GLI3	ENST00000461345.1|TMEM176A|ENSG00000002933.3|transmembrane protein 176A
hg19_v2_chr1_-_153433120_153433177	0.0281488	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr19_-_41196458_41196490	0.0279483	GLI3	ENST00000598779.1|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr19_+_9945962_9946023	0.0276606	GLI3	ENST00000587625.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000247970.4|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000588695.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1
hg19_v2_chr17_+_7905912_7905945	0.0275754	GLI3	ENST00000254854.4|GUCY2D|ENSG00000132518.6|guanylate cyclase 2D, membrane (retina-specific)
hg19_v2_chr11_+_107879459_107879702	0.0273486	GLI3	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr12_+_122326662_122326768	0.0272751	GLI3	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr15_+_75315896_75315956	0.0271889	GLI3	ENST00000342932.3|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000564923.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000569562.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000568649.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr13_+_115000556_115000573	0.0271862	GLI3	ENST00000252458.6|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr5_-_154230130_154230210	0.0271586	GLI3	ENST00000519501.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000518651.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000517938.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000520461.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2
hg19_v2_chr17_-_79995553_79995608	0.0269492	GLI3	ENST00000581584.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000577712.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000582900.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000579155.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000306869.2|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase
hg19_v2_chr9_+_135937365_135937365	0.026639	GLI3	ENST00000372080.4|CEL|ENSG00000170835.10|carboxyl ester lipase 	ENST00000351304.7|CEL|ENSG00000170835.10|carboxyl ester lipase
hg19_v2_chrX_-_47518498_47518521	0.0263912	GLI3	ENST00000335890.2|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr3_+_4535025_4535040	0.0262384	GLI3	ENST00000302640.8|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000354582.6|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000423119.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000357086.4|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000456211.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr2_-_24307635_24307660	0.0261837	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr3_-_10334585_10334601	0.0256227	GLI3	ENST00000430179.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449238.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000437422.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000287656.7|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000457360.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000439975.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000446937.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr9_+_35042205_35042266	0.0251061	GLI3	ENST00000312292.5|C9orf131|ENSG00000174038.8|chromosome 9 open reading frame 131 	ENST00000378745.3|C9orf131|ENSG00000174038.8|chromosome 9 open reading frame 131
hg19_v2_chr4_-_103748271_103748290	0.024944	GLI3	ENST00000343106.5|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr1_+_15802594_15802601	0.024569	GLI3	ENST00000375910.3|CELA2B|ENSG00000215704.5|chymotrypsin-like elastase family, member 2B
hg19_v2_chr13_-_20806440_20806534	0.0245091	GLI3	ENST00000400066.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000400065.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000356192.6|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa
hg19_v2_chr2_+_228736321_228736332	0.0243638	GLI3	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr3_-_10052763_10052816	0.024304	GLI3	ENST00000383808.2|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000426698.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000470827.2|EMC3|ENSG00000125037.8|ER membrane protein complex subunit 3
hg19_v2_chr12_+_14927270_14927347	0.0241483	GLI3	ENST00000544848.1|H2AFJ|ENSG00000246705.3|H2A histone family, member J
hg19_v2_chr21_+_45148735_45148791	0.023433	GLI3	ENST00000327574.4|PDXK|ENSG00000160209.14|pyridoxal (pyridoxine, vitamin B6) kinase
hg19_v2_chr19_-_51522955_51523020	0.0230692	GLI3	ENST00000358789.3|KLK10|ENSG00000129451.7|kallikrein-related peptidase 10
hg19_v2_chr11_+_111783450_111783475	0.0218223	GLI3	ENST00000537382.1|HSPB2|ENSG00000170276.4|Homo sapiens heat shock 27kDa protein 2 (HSPB2), mRNA.
hg19_v2_chr1_-_26232522_26232644	0.0213998	GLI3	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr10_-_116164239_116164268	0.0213135	GLI3	ENST00000419268.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000304129.4|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000545353.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chr15_-_76005170_76005197	0.02101	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg19_v2_chr2_+_20068606_20068626	0.0208041	GLI3	ENST00000607100.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr1_-_35450897_35450954	0.0207279	GLI3	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr14_-_21055874_21055890	0.0204667	GLI3	ENST00000553849.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr2_+_173940163_173940183	0.0203515	GLI3	ENST00000539448.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr15_+_42566384_42566475	0.019715	GLI3	ENST00000440615.2|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C 	ENST00000318010.8|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C
hg19_v2_chr17_+_36283971_36284016	0.0196698	GLI3	ENST00000327454.6|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F 	ENST00000378174.5|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F
hg19_v2_chr1_-_29508321_29508444	0.0195044	GLI3	ENST00000546138.1|SRSF4|ENSG00000116350.11|serine/arginine-rich splicing factor 4
hg19_v2_chr20_+_5986756_5986796	0.0194706	GLI3	ENST00000452938.1|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr13_-_88463487_88463524	0.0190572	GLI3	ENST00000606221.1|RP11-471M2.3|ENSG00000272046.1|RP11-471M2.3
hg19_v2_chr7_-_229557_229557	0.0190135	GLI3	ENST00000514988.1|AC145676.2|ENSG00000249852.1|Uncharacterized protein
hg19_v2_chr9_+_72435749_72435876	0.0189763	GLI3	ENST00000480564.1|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135
hg19_v2_chr3_+_187871060_187871102	0.0188732	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr5_+_175490540_175490540	0.0188038	GLI3	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr16_+_89894911_89894955	0.0187348	GLI3	ENST00000378247.3|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2 	ENST00000563972.1|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr19_+_37464063_37464127	0.0186372	GLI3	ENST00000586353.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000433993.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000592567.1|ZNF568|ENSG00000198453.8|zinc finger protein 568
hg19_v2_chr7_+_64363625_64363667	0.0179952	GLI3	ENST00000476120.1|ZNF273|ENSG00000198039.7|zinc finger protein 273 	ENST00000319636.5|ZNF273|ENSG00000198039.7|zinc finger protein 273 	ENST00000545510.1|ZNF273|ENSG00000198039.7|zinc finger protein 273
hg19_v2_chr2_+_192109911_192110170	0.0178884	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr9_-_34620440_34620515	0.0165525	GLI3	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr2_+_20068628_20068661	0.0163197	GLI3	ENST00000449086.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000456119.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000433669.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr5_+_61602055_61602083	0.0162075	GLI3	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr10_-_72648541_72648541	0.0156079	GLI3	ENST00000299299.3|PCBD1|ENSG00000166228.4|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha
hg19_v2_chr1_+_202091980_202091991	0.0154304	GLI3	ENST00000367282.5|GPR37L1|ENSG00000170075.8|G protein-coupled receptor 37 like 1
hg19_v2_chr11_+_34073195_34073266	0.0153026	GLI3	ENST00000341394.4|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr17_-_7145106_7145172	0.0145582	GLI3	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr12_-_56122761_56123004	0.0144042	GLI3	ENST00000552164.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000420846.3|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000257857.4|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr19_+_49713991_49714040	0.0141467	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.11|transient receptor potential cation channel, subfamily M, member 4
hg19_v2_chr7_+_29846099_29846181	0.0141019	GLI3	ENST00000409123.1|WIPF3|ENSG00000122574.6|WAS/WASL interacting protein family, member 3
hg19_v2_chr2_+_131769256_131769328	0.0136061	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr1_-_228353112_228353213	0.0134823	GLI3	ENST00000366713.1|IBA57-AS1|ENSG00000203684.5|IBA57 antisense RNA 1 (head to head)
hg19_v2_chr9_+_131873591_131873622	0.0129094	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr5_-_156569754_156569786	0.0116722	GLI3	ENST00000420343.1|MED7|ENSG00000155868.7|mediator complex subunit 7
hg19_v2_chr2_-_68052694_68052757	0.0110342	GLI3	ENST00000457448.1|AC010987.6|ENSG00000237013.1|AC010987.6
hg19_v2_chr13_-_114103443_114103592	0.0107853	GLI3	ENST00000356501.4|ADPRHL1|ENSG00000153531.8|ADP-ribosylhydrolase like 1 	ENST00000413169.2|ADPRHL1|ENSG00000153531.8|ADP-ribosylhydrolase like 1
hg19_v2_chr1_-_176176629_176176659	0.010699	GLI3	ENST00000367669.3|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr8_-_10987745_10987745	0.0103302	GLI3	ENST00000400102.3|AF131215.5|ENSG00000215346.3|AF131215.5
hg19_v2_chr11_+_118842417_118842477	0.0102893	GLI3	ENST00000317011.3|FOXR1|ENSG00000176302.8|forkhead box R1
hg19_v2_chr15_-_65809581_65809617	0.010102	GLI3	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr10_-_28571015_28571067	0.0100965	GLI3	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr12_+_29542557_29542671	0.00992779	GLI3	ENST00000550906.1|OVCH1-AS1|ENSG00000257599.1|OVCH1 antisense RNA 1
hg19_v2_chr12_-_10607084_10607284	0.00933941	GLI3	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr8_+_98656693_98656774	0.00862277	GLI3	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr9_+_137533615_137533660	0.00793643	GLI3	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr6_-_168479839_168479904	0.00706088	GLI3	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr22_-_30867973_30868036	0.00702788	GLI3	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr14_-_106322288_106322325	0.00696624	GLI3	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr16_-_2260834_2260906	0.00694762	GLI3	ENST00000562360.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5 	ENST00000566018.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5
hg19_v2_chr1_+_48688357_48688412	0.00679525	GLI3	ENST00000533824.1|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000438567.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000236495.5|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000420136.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9
hg19_v2_chr12_-_57882498_57882509	0.00602136	GLI3	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr6_+_35436167_35436194	0.00577853	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr8_-_145028013_145028088	0.0052075	GLI3	ENST00000354958.2|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr10_-_134145321_134145369	0.0049768	GLI3	ENST00000368625.4|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368619.3|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000456004.1|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368620.2|STK32C|ENSG00000165752.12|serine/threonine kinase 32C
hg19_v2_chr12_-_108714412_108714446	0.00485699	GLI3	ENST00000412676.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1 	ENST00000550573.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1
hg19_v2_chr1_-_176176114_176176259	0.00329056	GLI3	ENST00000308769.8|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr2_+_70314579_70314590	0.00326325	GLI3	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr15_-_72490114_72490145	0.00308671	GLI3	ENST00000309731.7|GRAMD2|ENSG00000175318.7|GRAM domain containing 2
hg19_v2_chr19_+_36142147_36142211	0.00283388	GLI3	ENST00000590618.1|COX6B1|ENSG00000126267.4|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)
hg19_v2_chr5_-_54281407_54281429	0.00210178	GLI3	ENST00000381403.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr6_-_33679452_33679528	0.001745	GLI3	ENST00000374231.4|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000607484.1|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000374214.3|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2
hg19_v2_chr20_-_13619550_13619587	0.00155699	GLI3	ENST00000455532.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000544472.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000539805.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000337743.4|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1
hg19_v2_chr2_-_48982708_48982837	0.00127605	GLI3	ENST00000428232.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000405626.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000294954.7|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor
hg19_v2_chr1_-_40349106_40349184	0.000891352	GLI3	ENST00000545233.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537440.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537223.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000541099.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000441669.2|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000544981.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000316891.5|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000372818.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1
hg19_v2_chr22_+_23247030_23247061	0.000117171	GLI3	ENST00000390324.2|IGLJ3|ENSG00000211678.2|immunoglobulin lambda joining 3
