hg19_v2_chr5_-_35938674_35938881	0.646791	LHX2	ENST00000397366.1|CAPSL|ENSG00000152611.7|calcyphosine-like 	ENST00000513623.1|CAPSL|ENSG00000152611.7|calcyphosine-like 	ENST00000514524.1|CAPSL|ENSG00000152611.7|calcyphosine-like 	ENST00000397367.2|CAPSL|ENSG00000152611.7|calcyphosine-like
hg19_v2_chr7_-_142232071_142232090	0.477768	LHX2	ENST00000390364.3|TRBV10-1|ENSG00000211717.3|T cell receptor beta variable 10-1(gene/pseudogene)
hg19_v2_chrX_+_18725758_18725784	0.456704	LHX2	ENST00000472826.1|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1 	ENST00000544635.1|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1 	ENST00000496075.2|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1
hg19_v2_chr2_+_69201705_69201776	0.43661	LHX2	ENST00000377938.2|GKN1|ENSG00000169605.5|gastrokine 1
hg19_v2_chr13_+_77522632_77522652	0.239866	LHX2	ENST00000377462.1|IRG1|ENSG00000102794.5|immunoresponsive 1 homolog (mouse)
hg19_v2_chr18_-_19994830_19994830	0.232763	LHX2	ENST00000525417.1|CTAGE1|ENSG00000212710.3|cutaneous T-cell lymphoma-associated antigen 1
hg19_v2_chr1_+_244515930_244515950	0.226229	LHX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr2_+_103035102_103035149	0.220832	LHX2	ENST00000264260.2|IL18RAP|ENSG00000115607.5|interleukin 18 receptor accessory protein
hg19_v2_chr12_-_100656134_100656134	0.209626	LHX2	ENST00000548313.1|DEPDC4|ENSG00000166153.12|DEP domain containing 4
hg19_v2_chr19_+_42212501_42212521	0.205602	LHX2	ENST00000398599.4|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5
hg19_v2_chr14_+_22554680_22554691	0.20172	LHX2	ENST00000390451.2|TRAV23DV6|ENSG00000211803.2|T cell receptor alpha variable 23/delta variable 6
hg19_v2_chr2_-_175712270_175712316	0.201146	LHX2	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr2_+_102953608_102953727	0.175791	LHX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr4_-_159956333_159956366	0.174209	LHX2	ENST00000434826.2|C4orf45|ENSG00000164123.6|chromosome 4 open reading frame 45
hg19_v2_chrX_-_11284095_11284131	0.172997	LHX2	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr10_-_24770632_24770632	0.169357	LHX2	ENST00000596413.1|AL353583.1|ENSG00000269879.1|AL353583.1
hg19_v2_chr12_+_82347498_82347593	0.166856	LHX2	ENST00000550506.1|RP11-362A1.1|ENSG00000257747.1|RP11-362A1.1
hg19_v2_chr12_-_10955226_10955226	0.159918	LHX2	ENST00000240687.2|TAS2R7|ENSG00000121377.2|taste receptor, type 2, member 7
hg19_v2_chr17_+_45000483_45000563	0.148049	LHX2	ENST00000576910.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000439730.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000393456.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000415811.2|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000575949.1|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000225567.4|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000572403.1|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2 	ENST00000570879.1|GOSR2|ENSG00000108433.11|golgi SNAP receptor complex member 2
hg19_v2_chr5_-_150473127_150473157	0.146705	LHX2	ENST00000521001.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr6_+_125524785_125524861	0.14501	LHX2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr12_+_122688090_122688284	0.139007	LHX2	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr2_-_10587897_10587926	0.137289	LHX2	ENST00000405333.1|ODC1|ENSG00000115758.8|ornithine decarboxylase 1 	ENST00000443218.1|ODC1|ENSG00000115758.8|ornithine decarboxylase 1
hg19_v2_chr4_-_153332886_153333030	0.135864	LHX2	ENST00000603841.1|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr14_-_51027838_51027851	0.134223	LHX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr5_+_98109322_98109350	0.129464	LHX2	ENST00000513185.1|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr11_-_62323702_62323738	0.129063	LHX2	ENST00000530285.1|AHNAK|ENSG00000124942.9|AHNAK nucleoprotein
hg19_v2_chr3_+_147795932_147795948	0.128115	LHX2	ENST00000490465.1|RP11-639B1.1|ENSG00000241131.1|RP11-639B1.1
hg19_v2_chr1_-_89591749_89591816	0.125542	LHX2	ENST00000370466.3|GBP2|ENSG00000162645.8|guanylate binding protein 2, interferon-inducible
hg19_v2_chr6_+_132873832_132873832	0.118453	LHX2	ENST00000275200.1|TAAR8|ENSG00000146385.1|trace amine associated receptor 8
hg19_v2_chr17_-_33864772_33864880	0.118241	LHX2	ENST00000361112.4|SLFN12L|ENSG00000205045.4|schlafen family member 12-like
hg19_v2_chr14_-_106926724_106926724	0.117857	LHX2	ENST00000434710.1|IGHV3-43|ENSG00000232216.1|immunoglobulin heavy variable 3-43
hg19_v2_chr7_-_22234381_22234430	0.111101	LHX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chrX_+_19373700_19373845	0.109673	LHX2	ENST00000379804.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1
hg19_v2_chr9_-_28670283_28670283	0.107689	LHX2	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chr19_+_15838834_15838834	0.105303	LHX2	ENST00000305899.3|OR10H2|ENSG00000171942.3|olfactory receptor, family 10, subfamily H, member 2
hg19_v2_chr3_+_35722487_35722507	0.103783	LHX2	ENST00000441454.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr4_-_89951028_89951062	0.102483	LHX2	ENST00000506913.1|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chrX_+_11129388_11129485	0.100252	LHX2	ENST00000321143.4|HCCS|ENSG00000004961.10|holocytochrome c synthase 	ENST00000380763.3|HCCS|ENSG00000004961.10|holocytochrome c synthase 	ENST00000380762.4|HCCS|ENSG00000004961.10|holocytochrome c synthase
hg19_v2_chr17_-_39216344_39216368	0.0989279	LHX2	ENST00000391418.2|KRTAP2-3|ENSG00000212724.2|keratin associated protein 2-3
hg19_v2_chr6_+_53883790_53883801	0.0987396	LHX2	ENST00000509997.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr17_-_34308524_34308548	0.0983181	LHX2	ENST00000293275.3|CCL16|ENSG00000161573.6|chemokine (C-C motif) ligand 16
hg19_v2_chr6_+_53883708_53883744	0.0945888	LHX2	ENST00000514921.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000274897.5|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000370877.2|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr10_-_90712520_90712536	0.0941819	LHX2	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr14_+_23845995_23846017	0.093586	LHX2	ENST00000359320.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr20_+_31870927_31870969	0.0928552	LHX2	ENST00000253354.1|BPIFB1|ENSG00000125999.6|BPI fold containing family B, member 1
hg19_v2_chr2_+_145780725_145780735	0.0912703	LHX2	ENST00000451478.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr16_+_31213206_31213206	0.0880751	LHX2	ENST00000561916.2|C16orf98|ENSG00000261359.2|chromosome 16 open reading frame 98
hg19_v2_chr2_-_208989225_208989255	0.0860349	LHX2	ENST00000264376.4|CRYGD|ENSG00000118231.4|crystallin, gamma D
hg19_v2_chr16_+_24266874_24266917	0.0856892	LHX2	ENST00000005284.3|CACNG3|ENSG00000006116.3|calcium channel, voltage-dependent, gamma subunit 3
hg19_v2_chr11_+_24518723_24518757	0.0839634	LHX2	ENST00000336930.6|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000529015.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000533227.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2
hg19_v2_chr10_-_61900762_61900779	0.0837997	LHX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr14_-_22005343_22005364	0.0830883	LHX2	ENST00000327430.3|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr11_-_40315640_40315684	0.0830487	LHX2	ENST00000278198.2|LRRC4C|ENSG00000148948.3|leucine rich repeat containing 4C
hg19_v2_chr3_+_57881966_57881977	0.0804191	LHX2	ENST00000495364.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr2_+_173686303_173686325	0.0788295	LHX2	ENST00000397087.3|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr16_+_31271274_31271315	0.0786906	LHX2	ENST00000287497.8|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit) 	ENST00000544665.3|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit)
hg19_v2_chr3_+_57882024_57882045	0.078051	LHX2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr11_-_55703876_55703876	0.0777113	LHX2	ENST00000301532.3|OR5I1|ENSG00000167825.3|olfactory receptor, family 5, subfamily I, member 1
hg19_v2_chr10_+_69865866_69865912	0.0775705	LHX2	ENST00000354393.2|MYPN|ENSG00000138347.11|myopalladin
hg19_v2_chr3_+_62936098_62936146	0.0750937	LHX2	ENST00000475886.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465684.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465262.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000468072.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698
hg19_v2_chr10_-_29923893_29923907	0.0748805	LHX2	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr2_-_231084617_231084654	0.0743066	LHX2	ENST00000409815.2|SP110|ENSG00000135899.12|SP110 nuclear body protein
hg19_v2_chr2_+_145780767_145780811	0.0715356	LHX2	ENST00000599358.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596278.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596747.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000608652.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000609705.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000608432.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596970.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602041.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000601578.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596034.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000414195.2|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000594837.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr10_-_4285923_4286104	0.0669726	LHX2	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr6_+_126661253_126661356	0.065807	LHX2	ENST00000368326.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368325.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368328.4|CENPW|ENSG00000203760.4|centromere protein W
hg19_v2_chr16_+_24741013_24741058	0.0646773	LHX2	ENST00000315183.7|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A 	ENST00000395799.3|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A
hg19_v2_chr17_+_17082842_17082884	0.0640544	LHX2	ENST00000579361.1|MPRIP|ENSG00000133030.15|myosin phosphatase Rho interacting protein
hg19_v2_chr2_+_162480845_162480890	0.0631271	LHX2	ENST00000375514.5|SLC4A10|ENSG00000144290.12|solute carrier family 4, sodium bicarbonate transporter, member 10 	ENST00000415876.2|SLC4A10|ENSG00000144290.12|solute carrier family 4, sodium bicarbonate transporter, member 10
hg19_v2_chr6_-_131291572_131291623	0.0625687	LHX2	ENST00000529208.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr19_+_20188830_20188844	0.061611	LHX2	ENST00000418063.2|ZNF90|ENSG00000213988.5|zinc finger protein 90
hg19_v2_chr11_+_63606373_63606418	0.0614853	LHX2	ENST00000402010.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000315032.8|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377809.4|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000413835.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377810.3|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2
hg19_v2_chr16_+_333152_333180	0.0612813	LHX2	ENST00000219406.6|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2 	ENST00000404312.1|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2 	ENST00000456379.1|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2
hg19_v2_chr2_+_45168875_45168916	0.0596281	LHX2	ENST00000260653.3|SIX3|ENSG00000138083.3|SIX homeobox 3
hg19_v2_chr4_-_105416039_105416065	0.0591828	LHX2	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr21_+_34619079_34619079	0.0581914	LHX2	ENST00000433395.2|AP000295.9|ENSG00000249624.4|AP000295.9
hg19_v2_chr16_-_66864806_66864900	0.0572174	LHX2	ENST00000566336.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000394074.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000563185.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000359087.4|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000379463.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000565535.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000290810.3|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1
hg19_v2_chrM_+_12331_12348	0.0571647	LHX2	ENST00000361567.2|MT-ND5|ENSG00000198786.2|mitochondrially encoded NADH dehydrogenase 5
hg19_v2_chrX_+_105937068_105937091	0.0571002	LHX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr11_+_31391381_31391426	0.0549344	LHX2	ENST00000465995.1|DNAJC24|ENSG00000170946.10|DnaJ (Hsp40) homolog, subfamily C, member 24 	ENST00000536040.1|DNAJC24|ENSG00000170946.10|DnaJ (Hsp40) homolog, subfamily C, member 24
hg19_v2_chr7_+_37960163_37960291	0.0543667	LHX2	ENST00000199448.4|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000559325.1|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000423717.1|EPDR1|ENSG00000086289.7|ependymin related 1
hg19_v2_chr11_-_104972158_104972190	0.0542966	LHX2	ENST00000598974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000593315.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000594519.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000415981.2|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525374.1|CARD16|ENSG00000204397.3|caspase recruitment domain family, member 16 	ENST00000375707.1|CARD17|ENSG00000255221.2|caspase recruitment domain family, member 17
hg19_v2_chr17_-_38859996_38860010	0.0541956	LHX2	ENST00000264651.2|KRT24|ENSG00000167916.4|keratin 24
hg19_v2_chr15_+_58430567_58430589	0.053267	LHX2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr15_-_51535208_51535261	0.053008	LHX2	ENST00000405913.3|CYP19A1|ENSG00000137869.9|cytochrome P450, family 19, subfamily A, polypeptide 1 	ENST00000559878.1|CYP19A1|ENSG00000137869.9|cytochrome P450, family 19, subfamily A, polypeptide 1
hg19_v2_chr15_+_58430368_58430401	0.0528367	LHX2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr8_+_66955648_66955712	0.0526247	LHX2	ENST00000522619.1|DNAJC5B|ENSG00000147570.5|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
hg19_v2_chr1_+_192127578_192127613	0.04908	LHX2	ENST00000367460.3|RGS18|ENSG00000150681.5|regulator of G-protein signaling 18
hg19_v2_chr12_-_11548496_11548505	0.0469645	LHX2	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr3_-_191000172_191000209	0.046357	LHX2	ENST00000427544.2|UTS2B|ENSG00000188958.5|urotensin 2B
hg19_v2_chr11_-_104827425_104827425	0.0458635	LHX2	ENST00000393150.3|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr7_-_14880892_14881075	0.0458457	LHX2	ENST00000406247.3|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa 	ENST00000399322.3|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa 	ENST00000258767.5|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr1_-_28527152_28527152	0.0449841	LHX2	ENST00000321830.5|AL353354.1|ENSG00000215902.1|Uncharacterized protein
hg19_v2_chr16_-_23652570_23652663	0.0446914	LHX2	ENST00000261584.4|PALB2|ENSG00000083093.5|partner and localizer of BRCA2
hg19_v2_chr18_+_66465302_66465324	0.0442674	LHX2	ENST00000360242.5|CCDC102B|ENSG00000150636.11|coiled-coil domain containing 102B 	ENST00000358653.5|CCDC102B|ENSG00000150636.11|coiled-coil domain containing 102B
hg19_v2_chr7_+_156433573_156433618	0.0440492	LHX2	ENST00000311822.8|RNF32|ENSG00000105982.12|ring finger protein 32
hg19_v2_chr13_-_45768841_45768855	0.0431233	LHX2	ENST00000379108.1|KCTD4|ENSG00000180332.5|potassium channel tetramerization domain containing 4
hg19_v2_chr6_-_26043885_26043947	0.0420748	LHX2	ENST00000357905.2|HIST1H2BB|ENSG00000196226.2|histone cluster 1, H2bb
hg19_v2_chr2_+_234216454_234216469	0.0415996	LHX2	ENST00000447536.1|SAG|ENSG00000130561.12|S-antigen; retina and pineal gland (arrestin) 	ENST00000409110.1|SAG|ENSG00000130561.12|S-antigen; retina and pineal gland (arrestin)
hg19_v2_chr12_+_6309517_6309615	0.0415516	LHX2	ENST00000382519.4|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000009180.4|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr20_+_56964169_56964182	0.0400407	LHX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr9_-_116061476_116061476	0.0392085	LHX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr9_+_108320392_108320444	0.0390722	LHX2	ENST00000602661.1|FKTN|ENSG00000106692.9|fukutin 	ENST00000223528.2|FKTN|ENSG00000106692.9|fukutin 	ENST00000448551.2|FKTN|ENSG00000106692.9|fukutin 	ENST00000540160.1|FKTN|ENSG00000106692.9|fukutin
hg19_v2_chr21_+_35014706_35014767	0.0385948	LHX2	ENST00000399353.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000444491.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381318.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr5_-_159546396_159546470	0.0383173	LHX2	ENST00000523662.1|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000456329.3|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000307063.7|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A
hg19_v2_chrX_+_130192318_130192331	0.0377574	LHX2	ENST00000370922.1|ARHGAP36|ENSG00000147256.6|Rho GTPase activating protein 36
hg19_v2_chr2_-_89157161_89157206	0.0374494	LHX2	ENST00000390237.2|IGKC|ENSG00000211592.2|immunoglobulin kappa constant
hg19_v2_chr17_+_48823975_48824003	0.0373227	LHX2	ENST00000513969.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000503728.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae)
hg19_v2_chr11_+_120973375_120973375	0.0372828	LHX2	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr14_-_107211459_107211478	0.0368463	LHX2	ENST00000390636.2|IGHV3-73|ENSG00000211976.2|immunoglobulin heavy variable 3-73
hg19_v2_chr8_+_22424551_22424585	0.0365131	LHX2	ENST00000523348.1|SORBS3|ENSG00000120896.9|sorbin and SH3 domain containing 3
hg19_v2_chr1_-_232651312_232651312	0.0364409	LHX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr17_-_39140549_39140579	0.0360809	LHX2	ENST00000377755.4|KRT40|ENSG00000204889.6|keratin 40
hg19_v2_chr2_-_128284020_128284091	0.0360611	LHX2	ENST00000295321.4|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae) 	ENST00000455721.2|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae)
hg19_v2_chr12_+_6554021_6554040	0.0360265	LHX2	ENST00000266557.3|CD27|ENSG00000139193.3|CD27 molecule
hg19_v2_chr21_-_27423339_27423352	0.0357238	LHX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr3_+_119187785_119187863	0.0344545	LHX2	ENST00000295588.4|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1 	ENST00000476573.1|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1
hg19_v2_chr12_-_10978957_10978957	0.0333253	LHX2	ENST00000240619.2|TAS2R10|ENSG00000121318.2|taste receptor, type 2, member 10
hg19_v2_chr10_-_14372870_14372944	0.03267	LHX2	ENST00000357447.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chr2_+_68962014_68962095	0.0309468	LHX2	ENST00000467265.1|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr19_+_42212526_42212576	0.0288985	LHX2	ENST00000598976.1|CEA|ENSG00000267881.1|Uncharacterized protein  	ENST00000221992.6|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5 	ENST00000405816.1|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5 	ENST00000435837.2|CEA|ENSG00000267881.1|Uncharacterized protein
hg19_v2_chr1_+_52682052_52682052	0.0287551	LHX2	ENST00000371591.1|ZFYVE9|ENSG00000157077.10|zinc finger, FYVE domain containing 9
hg19_v2_chr9_+_21440440_21440440	0.0279404	LHX2	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr3_+_108541608_108541624	0.0279288	LHX2	ENST00000426646.1|TRAT1|ENSG00000163519.9|T cell receptor associated transmembrane adaptor 1
hg19_v2_chr4_+_153021899_153021970	0.0272914	LHX2	ENST00000509332.1|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1	ENST00000504144.1|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1	ENST00000499452.2|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1
hg19_v2_chr3_+_108541545_108541569	0.0269722	LHX2	ENST00000295756.6|TRAT1|ENSG00000163519.9|T cell receptor associated transmembrane adaptor 1
hg19_v2_chr1_+_152975488_152975498	0.0267747	LHX2	ENST00000542696.1|SPRR3|ENSG00000163209.10|small proline-rich protein 3
hg19_v2_chr6_+_123038689_123038707	0.0266972	LHX2	ENST00000354275.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta 	ENST00000368446.1|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr15_+_69854027_69854062	0.0266547	LHX2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr16_+_23652700_23652713	0.0258616	LHX2	ENST00000300087.2|DCTN5|ENSG00000166847.5|dynactin 5 (p25)
hg19_v2_chr18_-_44702668_44702747	0.0256454	LHX2	ENST00000256433.3|IER3IP1|ENSG00000134049.3|immediate early response 3 interacting protein 1
hg19_v2_chr1_-_183560011_183560033	0.0247689	LHX2	ENST00000367536.1|NCF2|ENSG00000116701.10|neutrophil cytosolic factor 2
hg19_v2_chr1_-_152332480_152332484	0.0246949	LHX2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr12_+_27932803_27932953	0.0240523	LHX2	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr14_+_27342334_27342369	0.0234118	LHX2	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr6_-_26199499_26199528	0.0230676	LHX2	ENST00000377831.5|HIST1H3D|ENSG00000197409.6|histone cluster 1, H3d
hg19_v2_chr17_-_39222131_39222131	0.0226837	LHX2	ENST00000394015.2|KRTAP2-4|ENSG00000213417.2|keratin associated protein 2-4
hg19_v2_chr12_-_118796910_118796943	0.0222895	LHX2	ENST00000541186.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000539872.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr20_+_43029911_43029941	0.0219104	LHX2	ENST00000443598.2|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000316099.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000415691.2|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr12_+_9980069_9980087	0.0212697	LHX2	ENST00000354855.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000324214.4|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000279544.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1
hg19_v2_chr2_+_90139056_90139085	0.0211011	LHX2	ENST00000492446.1|IGKV1D-16|ENSG00000241244.1|immunoglobulin kappa variable 1D-16
hg19_v2_chr6_-_27841289_27841318	0.0209965	LHX2	ENST00000355981.2|HIST1H4L|ENSG00000198558.2|histone cluster 1, H4l
hg19_v2_chr4_+_70916119_70916167	0.0200102	LHX2	ENST00000246896.3|HTN1|ENSG00000126550.4|histatin 1 	ENST00000511674.1|HTN1|ENSG00000126550.4|histatin 1
hg19_v2_chr1_-_147142557_147142620	0.0196403	LHX2	ENST00000369238.6|ACP6|ENSG00000162836.7|acid phosphatase 6, lysophosphatidic
hg19_v2_chr11_+_94706973_94706987	0.0183508	LHX2	ENST00000536741.1|KDM4D|ENSG00000186280.5|lysine (K)-specific demethylase 4D
hg19_v2_chr8_-_19459993_19460011	0.0182721	LHX2	ENST00000454498.2|CSGALNACT1|ENSG00000147408.10|chondroitin sulfate N-acetylgalactosaminyltransferase 1 	ENST00000520003.1|CSGALNACT1|ENSG00000147408.10|chondroitin sulfate N-acetylgalactosaminyltransferase 1
hg19_v2_chr4_-_109541539_109541585	0.0180345	LHX2	ENST00000509984.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000507248.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000506795.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head)
hg19_v2_chrX_-_19988382_19988416	0.017513	LHX2	ENST00000356980.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379687.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379682.4|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23
hg19_v2_chr2_-_55276320_55276334	0.0171757	LHX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr15_-_72563585_72563628	0.016232	LHX2	ENST00000287196.9|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6 	ENST00000260376.7|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6
hg19_v2_chr5_-_75008244_75008286	0.0155452	LHX2	ENST00000510798.1|POC5|ENSG00000152359.10|POC5 centriolar protein 	ENST00000446329.2|POC5|ENSG00000152359.10|POC5 centriolar protein
hg19_v2_chr2_+_68961905_68961932	0.0152557	LHX2	ENST00000295381.3|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr1_-_198509804_198509865	0.015219	LHX2	ENST00000489986.1|ATP6V1G3|ENSG00000151418.7|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 	ENST00000367382.1|ATP6V1G3|ENSG00000151418.7|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3
hg19_v2_chr18_+_32556892_32557026	0.0147098	LHX2	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr2_+_120436733_120436759	0.0144388	LHX2	ENST00000401466.1|TMEM177|ENSG00000144120.8|transmembrane protein 177 	ENST00000424086.1|TMEM177|ENSG00000144120.8|transmembrane protein 177 	ENST00000272521.6|TMEM177|ENSG00000144120.8|transmembrane protein 177
hg19_v2_chr5_-_156536126_156536141	0.0140766	LHX2	ENST00000522593.1|HAVCR2|ENSG00000135077.4|hepatitis A virus cellular receptor 2
hg19_v2_chr2_+_68961934_68961975	0.0139992	LHX2	ENST00000409202.3|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr2_-_231084659_231084721	0.0126465	LHX2	ENST00000258381.6|SP110|ENSG00000135899.12|SP110 nuclear body protein 	ENST00000358662.4|SP110|ENSG00000135899.12|SP110 nuclear body protein 	ENST00000455674.1|SP110|ENSG00000135899.12|SP110 nuclear body protein 	ENST00000392048.3|SP110|ENSG00000135899.12|SP110 nuclear body protein
hg19_v2_chr4_+_70796784_70796799	0.0124058	LHX2	ENST00000246891.4|CSN1S1|ENSG00000126545.9|casein alpha s1 	ENST00000444405.3|CSN1S1|ENSG00000126545.9|casein alpha s1
hg19_v2_chr2_+_145780739_145780759	0.0118813	LHX2	ENST00000597173.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602108.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000420472.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr21_+_35014783_35014816	0.0111431	LHX2	ENST00000381291.4|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381285.4|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399367.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399352.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399355.2|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399349.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr21_-_43735446_43735525	0.0109519	LHX2	ENST00000398431.2|TFF3|ENSG00000160180.14|trefoil factor 3 (intestinal)
hg19_v2_chr7_-_54826920_54826939	0.0109314	LHX2	ENST00000395535.3|SEC61G|ENSG00000132432.9|Sec61 gamma subunit 	ENST00000352861.4|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr12_-_113574028_113574051	0.0107875	LHX2	ENST00000546530.1|RASAL1|ENSG00000111344.7|RAS protein activator like 1 (GAP1 like) 	ENST00000261729.5|RASAL1|ENSG00000111344.7|RAS protein activator like 1 (GAP1 like)
hg19_v2_chr3_-_131221790_131221835	0.0106644	LHX2	ENST00000512877.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000264995.3|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000511168.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000425847.2|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3
hg19_v2_chr18_+_3247779_3247871	0.0105731	LHX2	ENST00000578611.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000583449.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr1_-_85870177_85870208	0.01016	LHX2	ENST00000542148.1|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr7_-_151217166_151217206	0.0098435	LHX2	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chrX_+_99839799_99839938	0.00908706	LHX2	ENST00000373031.4|TNMD|ENSG00000000005.5|tenomodulin
hg19_v2_chr10_+_4828815_4828822	0.00906093	LHX2	ENST00000533295.1|AKR1E2|ENSG00000165568.13|aldo-keto reductase family 1, member E2
hg19_v2_chr6_-_66417107_66417125	0.00890254	LHX2	ENST00000370621.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000370618.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000503581.1|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000393380.2|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila)
hg19_v2_chr6_+_30848557_30848645	0.00875847	LHX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr21_-_43735628_43735761	0.00805051	LHX2	ENST00000291525.10|TFF3|ENSG00000160180.14|trefoil factor 3 (intestinal) 	ENST00000518498.1|TFF3|ENSG00000160180.14|trefoil factor 3 (intestinal)
hg19_v2_chr9_-_139137648_139137687	0.00709406	LHX2	ENST00000358701.5|QSOX2|ENSG00000165661.11|quiescin Q6 sulfhydryl oxidase 2
hg19_v2_chr10_+_95326416_95326454	0.00669513	LHX2	ENST00000371481.4|FFAR4|ENSG00000186188.6|free fatty acid receptor 4 	ENST00000371483.4|FFAR4|ENSG00000186188.6|free fatty acid receptor 4 	ENST00000604414.1|FFAR4|ENSG00000186188.6|free fatty acid receptor 4
hg19_v2_chr7_-_54826869_54826880	0.00660047	LHX2	ENST00000450622.1|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr11_+_113258495_113258513	0.00572746	LHX2	ENST00000303941.3|ANKK1|ENSG00000170209.4|ankyrin repeat and kinase domain containing 1
hg19_v2_chr1_+_160709076_160709094	0.00563714	LHX2	ENST00000359331.4|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000495334.1|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr14_+_69865401_69865426	0.00558424	LHX2	ENST00000556605.1|SLC39A9|ENSG00000029364.7|solute carrier family 39, member 9 	ENST00000336643.5|SLC39A9|ENSG00000029364.7|solute carrier family 39, member 9 	ENST00000031146.4|SLC39A9|ENSG00000029364.7|solute carrier family 39, member 9
hg19_v2_chr10_+_96443204_96443251	0.00537879	LHX2	ENST00000339022.5|CYP2C18|ENSG00000108242.8|cytochrome P450, family 2, subfamily C, polypeptide 18
hg19_v2_chr6_+_26199737_26199754	0.00528185	LHX2	ENST00000359985.1|HIST1H2BF|ENSG00000197846.3|histone cluster 1, H2bf
hg19_v2_chr16_+_23652773_23652850	0.00516981	LHX2	ENST00000563998.1|DCTN5|ENSG00000166847.5|dynactin 5 (p25) 	ENST00000568589.1|DCTN5|ENSG00000166847.5|dynactin 5 (p25) 	ENST00000568272.1|DCTN5|ENSG00000166847.5|dynactin 5 (p25)
hg19_v2_chr10_+_124320156_124320181	0.00477894	LHX2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr14_+_56078695_56078784	0.00336099	LHX2	ENST00000416613.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr4_-_1670632_1670632	0.00325463	LHX2	ENST00000461064.1|FAM53A|ENSG00000174137.8|family with sequence similarity 53, member A
hg19_v2_chr3_+_73110810_73110810	0.00279121	LHX2	ENST00000533473.1|EBLN2|ENSG00000255423.1|endogenous Bornavirus-like nucleoprotein 2
hg19_v2_chr12_+_48722763_48722763	0.00158868	LHX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr19_-_44384291_44384291	0.000977684	LHX2	ENST00000324394.6|ZNF404|ENSG00000176222.7|zinc finger protein 404
hg19_v2_chr9_+_116207007_116207012	0.00046156	LHX2	ENST00000374140.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
