hg19_v2_chr4_+_41614909_41614926	10.0059	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr4_+_41614720_41614734	9.536	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr4_+_41540160_41540196	8.44451	SOX3_SOX2	ENST00000503057.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000511496.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr19_+_10765699_10765728	7.02089	SOX3_SOX2	ENST00000590009.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr7_+_30960915_30961105	6.2796	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr4_+_144303093_144303132	5.99875	SOX3_SOX2	ENST00000505913.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr8_-_80993010_80993073	5.60994	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr15_-_82338460_82338496	5.34895	SOX3_SOX2	ENST00000558133.1|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B 	ENST00000329713.4|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B
hg19_v2_chr8_-_17579726_17579759	5.23823	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr9_-_123476719_123476810	5.03343	SOX3_SOX2	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr9_-_123476612_123476698	5.00046	SOX3_SOX2	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr3_+_141105235_141105307	4.83578	SOX3_SOX2	ENST00000503809.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr4_-_159080806_159080833	4.82863	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr1_+_185703513_185703683	4.67062	SOX3_SOX2	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr1_+_100111580_100111773	4.60399	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr7_+_102553430_102553456	4.44896	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr14_-_51027838_51027851	4.38	SOX3_SOX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr1_+_100111479_100111499	4.27935	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr16_+_30406721_30406820	4.11174	SOX3_SOX2	ENST00000320159.2|ZNF48|ENSG00000180035.6|zinc finger protein 48
hg19_v2_chr4_+_55524085_55524110	4.01661	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr5_-_111091948_111091994	4.01157	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr21_-_27945562_27945618	3.87585	SOX3_SOX2	ENST00000299340.4|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1 	ENST00000435845.2|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1
hg19_v2_chr4_-_186732048_186732225	3.71575	SOX3_SOX2	ENST00000448662.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439049.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000420158.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000431808.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319471.9|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr9_-_74979420_74979580	3.61734	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr4_-_186877502_186877563	3.5007	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr7_+_16793160_16793160	3.41344	SOX3_SOX2	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chrX_-_117107542_117107677	3.40222	SOX3_SOX2	ENST00000371878.1|KLHL13|ENSG00000003096.9|kelch-like family member 13
hg19_v2_chr1_+_164528866_164528877	3.39876	SOX3_SOX2	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr15_-_52944231_52944268	3.3845	SOX3_SOX2	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr6_+_30848557_30848645	3.3717	SOX3_SOX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr20_-_39317868_39317884	3.35026	SOX3_SOX2	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr3_+_151986709_151986892	3.26747	SOX3_SOX2	ENST00000495875.2|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000493459.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324210.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000459747.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr1_-_46598371_46598708	3.18146	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr3_-_18466026_18466065	3.17893	SOX3_SOX2	ENST00000417717.2|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr3_-_52719810_52719883	3.09755	SOX3_SOX2	ENST00000424867.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000394830.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000431678.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000450271.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr17_-_42276574_42276742	3.06888	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr18_+_6729698_6729724	2.93417	SOX3_SOX2	ENST00000383472.4|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr8_-_48651648_48651648	2.80214	SOX3_SOX2	ENST00000408965.3|CEBPD|ENSG00000221869.4|CCAAT/enhancer binding protein (C/EBP), delta
hg19_v2_chr5_+_121647764_121647876	2.75741	SOX3_SOX2	ENST00000261368.8|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379533.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379536.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379538.3|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr2_+_33172221_33172369	2.71095	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr2_+_69240302_69240332	2.67597	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr1_+_47489240_47489254	2.62214	SOX3_SOX2	ENST00000371901.3|CYP4X1|ENSG00000186377.6|cytochrome P450, family 4, subfamily X, polypeptide 1
hg19_v2_chr5_+_121647924_121647940	2.60081	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr13_+_32605437_32605473	2.58456	SOX3_SOX2	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr11_-_10830463_10830494	2.53638	SOX3_SOX2	ENST00000527419.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530211.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530702.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000524932.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000532570.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr8_-_6420565_6420659	2.45965	SOX3_SOX2	ENST00000338312.6|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr5_+_121647877_121647913	2.45497	SOX3_SOX2	ENST00000514497.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000261367.7|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr12_+_93772402_93772430	2.4404	SOX3_SOX2	ENST00000546925.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chrX_+_84499081_84499115	2.43454	SOX3_SOX2	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr9_+_82187630_82187722	2.41384	SOX3_SOX2	ENST00000265284.6|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr9_+_82187487_82187557	2.40485	SOX3_SOX2	ENST00000435650.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000414465.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376537.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376534.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr12_-_6233828_6233843	2.39277	SOX3_SOX2	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr10_+_18948311_18948417	2.3668	SOX3_SOX2	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr4_+_156680143_156680152	2.2843	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr1_+_65886326_65886406	2.28311	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr11_-_66445219_66445392	2.25752	SOX3_SOX2	ENST00000525754.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531969.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000524637.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531036.2|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000310046.4|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B
hg19_v2_chr17_-_14683517_14683523	2.25299	SOX3_SOX2	ENST00000379640.1|AC005863.1|ENSG00000205325.1|AC005863.1
hg19_v2_chr10_+_35484793_35484937	2.24856	SOX3_SOX2	ENST00000488741.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000474931.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000468236.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000344351.5|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000490511.1|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr7_-_22233442_22233527	2.24155	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr9_+_91003271_91003386	2.23459	SOX3_SOX2	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chrX_+_15518923_15518952	2.21906	SOX3_SOX2	ENST00000348343.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr4_+_154387480_154387536	2.14819	SOX3_SOX2	ENST00000409663.3|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000440693.1|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000409959.3|KIAA0922|ENSG00000121210.11|KIAA0922
hg19_v2_chr2_-_238499303_238499331	2.1411	SOX3_SOX2	ENST00000409576.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr3_-_65583561_65583610	2.07699	SOX3_SOX2	ENST00000460329.2|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr11_-_10829851_10829860	2.07253	SOX3_SOX2	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr4_+_144258021_144258052	2.05596	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chrX_+_86772787_86772817	2.04735	SOX3_SOX2	ENST00000373114.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr14_-_50999190_50999225	2.01126	SOX3_SOX2	ENST00000557390.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr7_-_32931623_32931756	1.9825	SOX3_SOX2	ENST00000452926.1|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr1_+_66458072_66458109	1.9819	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr6_-_130031358_130031378	1.97177	SOX3_SOX2	ENST00000368149.2|ARHGAP18|ENSG00000146376.6|Rho GTPase activating protein 18
hg19_v2_chrX_+_84499038_84499078	1.9578	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr2_-_188312971_188312987	1.94538	SOX3_SOX2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr3_-_141747439_141747452	1.93068	SOX3_SOX2	ENST00000467667.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr8_-_6420759_6420775	1.92696	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr6_-_107436473_107436543	1.91182	SOX3_SOX2	ENST00000369042.1|BEND3|ENSG00000178409.9|BEN domain containing 3
hg19_v2_chr8_-_124553437_124553453	1.90672	SOX3_SOX2	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr12_+_93772326_93772384	1.90644	SOX3_SOX2	ENST00000550056.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000549992.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000548662.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000547014.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr2_-_208489707_208490022	1.90297	SOX3_SOX2	ENST00000448007.2|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000432416.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000411432.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chr1_+_33231268_33231284	1.88956	SOX3_SOX2	ENST00000373480.1|KIAA1522|ENSG00000162522.6|KIAA1522
hg19_v2_chr1_+_182808474_182808504	1.88363	SOX3_SOX2	ENST00000367549.3|DHX9|ENSG00000135829.12|DEAH (Asp-Glu-Ala-His) box helicase 9
hg19_v2_chrX_+_84498989_84499003	1.88343	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr8_-_38326119_38326134	1.87944	SOX3_SOX2	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr2_+_111880242_111880289	1.87609	SOX3_SOX2	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr10_+_102106829_102106881	1.84869	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr4_+_146403912_146403972	1.84676	SOX3_SOX2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr4_-_90757364_90757396	1.84485	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr4_-_90756769_90756846	1.84443	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr1_-_182360498_182360541	1.83797	SOX3_SOX2	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr15_+_57210961_57211030	1.82999	SOX3_SOX2	ENST00000557843.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr15_+_77224045_77224121	1.82833	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr5_-_111092930_111092955	1.82636	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr9_+_133971863_133971897	1.82491	SOX3_SOX2	ENST00000372309.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr4_+_78079450_78079563	1.81525	SOX3_SOX2	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr21_-_27423339_27423352	1.81308	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr6_+_132455118_132455176	1.81069	SOX3_SOX2	ENST00000458028.1|LINC01013|ENSG00000228495.1|long intergenic non-protein coding RNA 1013
hg19_v2_chr9_+_133971909_133971943	1.7957	SOX3_SOX2	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr2_-_26205340_26205381	1.79515	SOX3_SOX2	ENST00000264712.3|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr19_-_49864746_49864780	1.78502	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr4_+_156680153_156680242	1.77658	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr13_-_107187462_107187462	1.74819	SOX3_SOX2	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr6_+_155537771_155537868	1.71947	SOX3_SOX2	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr8_-_38325219_38325418	1.7158	SOX3_SOX2	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr4_+_78079570_78079586	1.71363	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr4_+_78078304_78078406	1.71133	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr13_+_111767650_111767874	1.69212	SOX3_SOX2	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr8_+_68864330_68864361	1.6831	SOX3_SOX2	ENST00000288368.4|PREX2|ENSG00000046889.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
hg19_v2_chr8_-_6420777_6420784	1.67664	SOX3_SOX2	ENST00000415216.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr1_+_61330931_61331017	1.67491	SOX3_SOX2	ENST00000371191.1|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr3_-_141747950_141748004	1.67435	SOX3_SOX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr8_-_6420930_6420957	1.66069	SOX3_SOX2	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chrX_-_134049233_134049258	1.6538	SOX3_SOX2	ENST00000370779.4|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr7_+_77167343_77167369	1.65006	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr1_-_85930246_85930289	1.64445	SOX3_SOX2	ENST00000426972.3|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr5_-_111093167_111093252	1.63984	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chrX_+_80457442_80457501	1.6354	SOX3_SOX2	ENST00000373212.5|SH3BGRL|ENSG00000131171.8|SH3 domain binding glutamic acid-rich protein like
hg19_v2_chr17_+_65374075_65374271	1.63442	SOX3_SOX2	ENST00000581322.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr20_-_4804244_4804293	1.63088	SOX3_SOX2	ENST00000379400.3|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr16_-_46864955_46864980	1.62991	SOX3_SOX2	ENST00000565112.1|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr5_-_111092873_111092898	1.6288	SOX3_SOX2	ENST00000509025.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000515855.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr6_-_75915757_75915775	1.61009	SOX3_SOX2	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr11_+_125034586_125034604	1.60835	SOX3_SOX2	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr5_-_111093081_111093111	1.60368	SOX3_SOX2	ENST00000453526.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000509427.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr7_+_116312411_116312502	1.60036	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chrX_-_45060135_45060149	1.59249	SOX3_SOX2	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr5_+_148960931_148961073	1.58477	SOX3_SOX2	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr5_+_140797296_140797427	1.57847	SOX3_SOX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr18_+_3448455_3448497	1.57743	SOX3_SOX2	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr10_-_91174215_91174314	1.5758	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chr14_+_91580777_91580793	1.5755	SOX3_SOX2	ENST00000525393.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000428926.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517362.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr1_+_40915725_40915808	1.57406	SOX3_SOX2	ENST00000484445.1|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000411995.2|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000361584.3|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B
hg19_v2_chr14_+_91581011_91581044	1.57367	SOX3_SOX2	ENST00000523894.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522322.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523771.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr7_+_115850547_115850626	1.57088	SOX3_SOX2	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr3_+_183353356_183353450	1.56966	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr3_-_125820348_125820400	1.56227	SOX3_SOX2	ENST00000509064.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000508835.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr1_+_66999268_66999313	1.55394	SOX3_SOX2	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr22_-_37880543_37880667	1.54093	SOX3_SOX2	ENST00000442496.1|MFNG|ENSG00000100060.13|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chr5_-_39425222_39425283	1.53329	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr17_-_76123101_76123168	1.52986	SOX3_SOX2	ENST00000392467.3|TMC6|ENSG00000141524.11|transmembrane channel-like 6
hg19_v2_chr13_-_99667960_99668068	1.51453	SOX3_SOX2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr6_+_132455526_132455551	1.51354	SOX3_SOX2	ENST00000443303.1|LINC01013|ENSG00000228495.1|long intergenic non-protein coding RNA 1013
hg19_v2_chr3_-_128690173_128690173	1.50667	SOX3_SOX2	ENST00000508239.1|RP11-723O4.6|ENSG00000187695.6|Uncharacterized protein FLJ43738
hg19_v2_chr4_+_144257915_144258009	1.49522	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr2_+_33172012_33172039	1.47475	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr8_-_29940464_29940486	1.47216	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr14_+_77228532_77228672	1.46312	SOX3_SOX2	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr16_+_11762270_11762344	1.45955	SOX3_SOX2	ENST00000329565.5|SNN|ENSG00000184602.5|stannin
hg19_v2_chr22_-_36357671_36357714	1.45761	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr15_+_77223960_77223994	1.4491	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr2_-_208489275_208489346	1.44425	SOX3_SOX2	ENST00000272839.3|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000426075.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chrX_+_55744228_55744318	1.4404	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr19_-_19051927_19051934	1.41201	SOX3_SOX2	ENST00000600077.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr14_+_91580708_91580730	1.39913	SOX3_SOX2	ENST00000518868.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr14_+_96505659_96505664	1.39319	SOX3_SOX2	ENST00000555004.1|C14orf132|ENSG00000227051.4|chromosome 14 open reading frame 132
hg19_v2_chr15_-_73075964_73075980	1.39302	SOX3_SOX2	ENST00000563907.1|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr5_-_39425068_39425098	1.37847	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr14_-_88459503_88459615	1.37534	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr13_-_41593425_41593480	1.36959	SOX3_SOX2	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr14_-_91884115_91884127	1.36415	SOX3_SOX2	ENST00000389857.6|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr11_+_68080077_68080127	1.36367	SOX3_SOX2	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr8_+_86121448_86121494	1.3598	SOX3_SOX2	ENST00000520225.1|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr1_+_93913713_93913839	1.35962	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr16_+_67063262_67063364	1.34477	SOX3_SOX2	ENST00000565389.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr3_-_112360116_112360153	1.33687	SOX3_SOX2	ENST00000206423.3|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80 	ENST00000439685.2|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr6_+_89790459_89790479	1.33118	SOX3_SOX2	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr3_+_141043050_141043063	1.32941	SOX3_SOX2	ENST00000509842.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr2_+_169923577_169923592	1.3285	SOX3_SOX2	ENST00000432060.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr14_-_100772767_100772790	1.32252	SOX3_SOX2	ENST00000392908.3|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 	ENST00000539621.1|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chr8_-_38326139_38326161	1.31972	SOX3_SOX2	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr3_+_182983090_182983115	1.31798	SOX3_SOX2	ENST00000465010.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr2_+_177015950_177015950	1.31706	SOX3_SOX2	ENST00000306324.3|HOXD4|ENSG00000170166.5|homeobox D4
hg19_v2_chr5_-_39425290_39425336	1.3151	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr5_-_111093759_111093915	1.31305	SOX3_SOX2	ENST00000509979.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000513100.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000508161.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000455559.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr4_-_99578776_99578786	1.30928	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr16_-_15736881_15736928	1.29971	SOX3_SOX2	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr7_-_5569588_5569627	1.29126	SOX3_SOX2	ENST00000417101.1|ACTB|ENSG00000075624.9|actin, beta
hg19_v2_chr6_+_126240442_126240459	1.29015	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr2_-_165424973_165425010	1.28752	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr6_-_35656685_35656701	1.28657	SOX3_SOX2	ENST00000539068.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000540787.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr9_-_14313641_14313666	1.2852	SOX3_SOX2	ENST00000380953.1|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr13_+_111365602_111365625	1.28349	SOX3_SOX2	ENST00000333219.7|ING1|ENSG00000153487.11|inhibitor of growth family, member 1
hg19_v2_chr12_+_93963590_93963628	1.28349	SOX3_SOX2	ENST00000340600.2|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr9_+_124103625_124103625	1.27236	SOX3_SOX2	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr1_-_201123546_201123581	1.26554	SOX3_SOX2	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr1_-_201123586_201123637	1.25847	SOX3_SOX2	ENST00000414605.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367334.5|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367332.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr7_+_107224364_107224391	1.256	SOX3_SOX2	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr14_-_100772862_100772877	1.25108	SOX3_SOX2	ENST00000359232.3|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chrX_+_55744166_55744222	1.24872	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chrX_+_135229600_135229624	1.24236	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr7_-_22234381_22234430	1.23487	SOX3_SOX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chrX_+_86772707_86772752	1.2342	SOX3_SOX2	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr6_-_35656712_35656723	1.22533	SOX3_SOX2	ENST00000357266.4|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000542713.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr13_+_111855414_111855417	1.22412	SOX3_SOX2	ENST00000375737.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr9_+_103235365_103235419	1.22318	SOX3_SOX2	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr15_-_59665062_59665099	1.21901	SOX3_SOX2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr7_-_19813192_19813256	1.21101	SOX3_SOX2	ENST00000422233.1|TMEM196|ENSG00000173452.9|transmembrane protein 196 	ENST00000433641.1|TMEM196|ENSG00000173452.9|transmembrane protein 196
hg19_v2_chr6_+_160183492_160183523	1.21026	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr14_+_53019993_53020137	1.20365	SOX3_SOX2	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr15_-_70994612_70994652	1.20183	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr14_+_63671105_63671126	1.20152	SOX3_SOX2	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr14_-_23285069_23285127	1.20128	SOX3_SOX2	ENST00000554758.1|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 	ENST00000397528.4|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr6_+_80341000_80341025	1.20047	SOX3_SOX2	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chrX_+_100333709_100333876	1.19689	SOX3_SOX2	ENST00000372930.4|TMEM35|ENSG00000126950.7|transmembrane protein 35
hg19_v2_chr9_-_139658965_139658975	1.19437	SOX3_SOX2	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chr4_-_48782259_48782335	1.18596	SOX3_SOX2	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr17_+_36584662_36584730	1.18474	SOX3_SOX2	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr4_-_99578789_99578843	1.16836	SOX3_SOX2	ENST00000511651.1|TSPAN5|ENSG00000168785.3|tetraspanin 5 	ENST00000505184.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chrX_+_135579238_135579416	1.16732	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr2_+_169923504_169923545	1.15945	SOX3_SOX2	ENST00000357546.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr16_+_29819096_29819250	1.15001	SOX3_SOX2	ENST00000568411.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor) 	ENST00000563012.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor) 	ENST00000562557.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr13_-_103451307_103451380	1.14764	SOX3_SOX2	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr14_-_23285011_23285039	1.13812	SOX3_SOX2	ENST00000397532.3|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr1_+_66797687_66797884	1.13713	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr6_-_11232891_11232915	1.13707	SOX3_SOX2	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr17_+_65373531_65373577	1.12787	SOX3_SOX2	ENST00000580974.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr13_-_114843416_114843438	1.1227	SOX3_SOX2	ENST00000389544.4|RASA3|ENSG00000185989.9|RAS p21 protein activator 3
hg19_v2_chrX_+_70503433_70503517	1.11893	SOX3_SOX2	ENST00000276079.8|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000373856.3|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000373841.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000420903.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr8_-_22550815_22550844	1.11592	SOX3_SOX2	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr7_+_20370746_20370778	1.11353	SOX3_SOX2	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr1_-_35658736_35658754	1.11141	SOX3_SOX2	ENST00000357214.5|SFPQ|ENSG00000116560.6|splicing factor proline/glutamine-rich
hg19_v2_chr19_-_20844343_20844351	1.10612	SOX3_SOX2	ENST00000595405.1|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr21_+_33784670_33784696	1.10147	SOX3_SOX2	ENST00000300255.2|EVA1C|ENSG00000166979.8|eva-1 homolog C (C. elegans)
hg19_v2_chr5_+_140571902_140571967	1.10074	SOX3_SOX2	ENST00000239446.4|PCDHB10|ENSG00000120324.4|protocadherin beta 10
hg19_v2_chr17_+_25621102_25621157	1.09545	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr11_-_2162468_2162497	1.08308	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr7_-_128415844_128415849	1.08279	SOX3_SOX2	ENST00000249389.2|OPN1SW|ENSG00000128617.2|opsin 1 (cone pigments), short-wave-sensitive
hg19_v2_chr6_+_89790490_89790506	1.08235	SOX3_SOX2	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr10_-_97321112_97321163	1.08067	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr1_-_935519_935552	1.07932	SOX3_SOX2	ENST00000428771.2|HES4|ENSG00000188290.6|hes family bHLH transcription factor 4
hg19_v2_chr20_+_30598231_30598260	1.07207	SOX3_SOX2	ENST00000300415.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like 	ENST00000262659.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like
hg19_v2_chr4_-_138453606_138453673	1.06668	SOX3_SOX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr9_-_74525847_74525847	1.05843	SOX3_SOX2	ENST00000377041.2|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr11_-_47207390_47207432	1.05666	SOX3_SOX2	ENST00000539589.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3 	ENST00000528462.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3
hg19_v2_chr6_+_44215603_44215666	1.0537	SOX3_SOX2	ENST00000371554.1|HSP90AB1|ENSG00000096384.15|heat shock protein 90kDa alpha (cytosolic), class B member 1
hg19_v2_chr4_-_186733363_186733392	1.05039	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr1_-_46598284_46598356	1.0469	SOX3_SOX2	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr22_+_19701985_19702063	1.04535	SOX3_SOX2	ENST00000455784.2|SEPT5|ENSG00000184702.13|septin 5 	ENST00000406395.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr1_+_228337553_228337602	1.03548	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr12_-_71003568_71003629	1.03457	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr17_-_62502022_62502074	1.03269	SOX3_SOX2	ENST00000578804.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr2_+_203241531_203241659	1.02917	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr4_-_2264015_2264041	1.02833	SOX3_SOX2	ENST00000337190.2|MXD4|ENSG00000123933.10|MAX dimerization protein 4
hg19_v2_chr16_-_11730213_11730238	1.02592	SOX3_SOX2	ENST00000576334.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574848.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr17_-_56605341_56605363	1.02591	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr15_-_64995399_64995480	1.02227	SOX3_SOX2	ENST00000559753.1|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000560258.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000559912.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000326005.6|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2
hg19_v2_chr10_-_97321165_97321176	1.01721	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr2_-_208031542_208031595	1.01238	SOX3_SOX2	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chrX_+_135229559_135229576	1.01201	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr14_+_91580732_91580746	1.00527	SOX3_SOX2	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr11_+_114168085_114168222	1.00462	SOX3_SOX2	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr9_-_130616915_130616944	0.998141	SOX3_SOX2	ENST00000344849.3|ENG|ENSG00000106991.9|endoglin
hg19_v2_chr5_-_95158644_95158709	0.995647	SOX3_SOX2	ENST00000237858.6|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr1_-_214638146_214638146	0.992574	SOX3_SOX2	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr19_+_50194360_50194410	0.991457	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chr10_+_69644404_69644427	0.985097	SOX3_SOX2	ENST00000212015.6|SIRT1|ENSG00000096717.7|sirtuin 1
hg19_v2_chr5_+_43603229_43603356	0.978787	SOX3_SOX2	ENST00000344920.4|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512996.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr2_-_75796837_75796849	0.978583	SOX3_SOX2	ENST00000233712.1|EVA1A|ENSG00000115363.9|eva-1 homolog A (C. elegans)
hg19_v2_chr12_-_31477072_31477110	0.976716	SOX3_SOX2	ENST00000454658.2|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chrX_-_80457385_80457441	0.970994	SOX3_SOX2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr22_-_31688381_31688418	0.970655	SOX3_SOX2	ENST00000487265.2|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr15_-_70388943_70389220	0.968971	SOX3_SOX2	ENST00000559048.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000560939.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000440567.3|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000557907.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558379.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000451782.2|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000559929.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr1_-_235491462_235491534	0.968235	SOX3_SOX2	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr19_+_39904168_39904468	0.967179	SOX3_SOX2	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr17_-_18585131_18585171	0.965655	SOX3_SOX2	ENST00000443457.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000583002.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr1_+_29241027_29241095	0.961873	SOX3_SOX2	ENST00000373797.1|EPB41|ENSG00000159023.14|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
hg19_v2_chr5_+_140749803_140749831	0.961389	SOX3_SOX2	ENST00000576222.1|PCDHGB3|ENSG00000262209.1|protocadherin gamma subfamily B, 3
hg19_v2_chr4_+_52709229_52709345	0.958543	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr8_-_8751068_8751158	0.958314	SOX3_SOX2	ENST00000276282.6|MFHAS1|ENSG00000147324.6|malignant fibrous histiocytoma amplified sequence 1
hg19_v2_chr2_-_183387430_183387465	0.953044	SOX3_SOX2	ENST00000410103.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr17_-_49337392_49337465	0.951011	SOX3_SOX2	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr1_+_155036204_155036238	0.949135	SOX3_SOX2	ENST00000368409.3|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000359751.4|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000556931.1|EFNA3|ENSG00000143590.9|ephrin-A3 	ENST00000505139.1|EFNA3|ENSG00000251246.1|Ephrin-A3; Uncharacterized protein; cDNA FLJ57652, highly similar to Ephrin-A3  	ENST00000427683.2|EFNA4|ENSG00000243364.3|ephrin-A4
hg19_v2_chrX_-_63005405_63005440	0.947198	SOX3_SOX2	ENST00000374878.1|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000437457.2|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v2_chr17_+_31254892_31254955	0.943841	SOX3_SOX2	ENST00000394642.3|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000579849.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr3_+_19988566_19988648	0.941325	SOX3_SOX2	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr9_-_14313893_14313984	0.940048	SOX3_SOX2	ENST00000380921.3|NFIB|ENSG00000147862.10|nuclear factor I/B 	ENST00000380959.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr14_-_35344093_35344138	0.939906	SOX3_SOX2	ENST00000382422.2|BAZ1A|ENSG00000198604.6|bromodomain adjacent to zinc finger domain, 1A
hg19_v2_chr7_+_29234028_29234043	0.939299	SOX3_SOX2	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr19_+_8455200_8455301	0.937785	SOX3_SOX2	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr9_+_71789133_71789220	0.936172	SOX3_SOX2	ENST00000348208.4|TJP2|ENSG00000119139.12|tight junction protein 2 	ENST00000265384.7|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr22_-_27014043_27014073	0.934521	SOX3_SOX2	ENST00000215939.2|CRYBB1|ENSG00000100122.5|crystallin, beta B1
hg19_v2_chrX_+_135251835_135251887	0.933169	SOX3_SOX2	ENST00000456445.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr1_+_236305826_236305877	0.926638	SOX3_SOX2	ENST00000366592.3|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B 	ENST00000366591.4|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B
hg19_v2_chr3_+_134514093_134514169	0.921819	SOX3_SOX2	ENST00000398015.3|EPHB1|ENSG00000154928.12|EPH receptor B1
hg19_v2_chr14_-_73493784_73493822	0.921104	SOX3_SOX2	ENST00000553891.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr14_-_71107921_71108085	0.920855	SOX3_SOX2	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr21_+_17909594_17909663	0.919814	SOX3_SOX2	ENST00000441820.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602280.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr7_+_12727250_12727265	0.916967	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr7_-_148581251_148581347	0.916344	SOX3_SOX2	ENST00000478654.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000460911.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000350995.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr14_-_88459182_88459236	0.911724	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr20_-_25566153_25566211	0.900796	SOX3_SOX2	ENST00000278886.6|NINL|ENSG00000101004.10|ninein-like 	ENST00000422516.1|NINL|ENSG00000101004.10|ninein-like
hg19_v2_chr12_-_95009837_95009854	0.899389	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr8_+_94929969_94929980	0.898042	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr7_+_29234101_29234130	0.895426	SOX3_SOX2	ENST00000435288.2|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr3_-_66024213_66024238	0.891942	SOX3_SOX2	ENST00000483466.1|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr5_-_115910091_115910141	0.891802	SOX3_SOX2	ENST00000257414.8|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr1_+_97188188_97188273	0.890073	SOX3_SOX2	ENST00000541987.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr2_-_70475701_70475717	0.882123	SOX3_SOX2	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr14_+_22458631_22458735	0.881681	SOX3_SOX2	ENST00000390444.1|TRAV16|ENSG00000211796.1|T cell receptor alpha variable 16
hg19_v2_chr1_+_89990431_89990493	0.880136	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr12_+_69979210_69979252	0.878526	SOX3_SOX2	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr20_-_50419055_50419066	0.876971	SOX3_SOX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr1_+_33722080_33722174	0.875852	SOX3_SOX2	ENST00000483388.1|ZNF362|ENSG00000160094.10|zinc finger protein 362 	ENST00000539719.1|ZNF362|ENSG00000160094.10|zinc finger protein 362
hg19_v2_chr1_-_32801825_32801980	0.874187	SOX3_SOX2	ENST00000329421.7|MARCKSL1|ENSG00000175130.6|MARCKS-like 1
hg19_v2_chr8_+_42873548_42873567	0.871469	SOX3_SOX2	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chr1_-_17307173_17307330	0.866425	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr9_-_73483958_73483985	0.864993	SOX3_SOX2	ENST00000377101.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377106.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000360823.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377105.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr16_-_28550348_28550495	0.864723	SOX3_SOX2	ENST00000324873.6|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chrX_+_135251783_135251813	0.864634	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chrX_-_77395186_77395203	0.862673	SOX3_SOX2	ENST00000341864.5|TAF9B|ENSG00000187325.4|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
hg19_v2_chr11_-_76155618_76155676	0.858496	SOX3_SOX2	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr17_+_15602891_15603091	0.85831	SOX3_SOX2	ENST00000421016.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000593105.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580259.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583566.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000472486.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000395894.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000581529.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000579694.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580393.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000585194.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583031.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000464847.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr17_+_15603447_15603447	0.856897	SOX3_SOX2	ENST00000395893.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr1_-_93645818_93645918	0.856219	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr16_+_67062996_67063019	0.846761	SOX3_SOX2	ENST00000561924.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr9_-_91793675_91793698	0.845506	SOX3_SOX2	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr2_-_188430478_188430496	0.843756	SOX3_SOX2	ENST00000421427.1|TFPI|ENSG00000003436.10|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
hg19_v2_chr16_-_67217844_67217943	0.843662	SOX3_SOX2	ENST00000563902.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000561621.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000290881.7|KIAA0895L|ENSG00000196123.8|KIAA0895-like
hg19_v2_chr2_+_24150180_24150202	0.838789	SOX3_SOX2	ENST00000404924.1|UBXN2A|ENSG00000173960.8|UBX domain protein 2A
hg19_v2_chr2_+_54683419_54683442	0.834976	SOX3_SOX2	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr14_-_50698276_50698304	0.826747	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr5_-_180018540_180018549	0.824172	SOX3_SOX2	ENST00000292641.3|SCGB3A1|ENSG00000161055.3|secretoglobin, family 3A, member 1
hg19_v2_chr14_+_103589789_103589804	0.823691	SOX3_SOX2	ENST00000558056.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2 	ENST00000560869.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chrX_-_63425561_63425624	0.822345	SOX3_SOX2	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr15_+_25200108_25200161	0.82026	SOX3_SOX2	ENST00000577949.1|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000338094.6|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000579070.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000577565.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000338327.4|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein
hg19_v2_chrX_-_140786896_140786896	0.819155	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr7_-_105925558_105925638	0.818553	SOX3_SOX2	ENST00000222553.3|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr2_-_70475730_70475798	0.818416	SOX3_SOX2	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr11_-_2162162_2162246	0.814434	SOX3_SOX2	ENST00000381389.1|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr16_+_2083265_2083303	0.814408	SOX3_SOX2	ENST00000565855.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 	ENST00000566198.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr3_-_141747459_141747507	0.813285	SOX3_SOX2	ENST00000477292.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000478006.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000495310.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000486111.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr6_+_135502408_135502459	0.808512	SOX3_SOX2	ENST00000341911.5|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000442647.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000316528.8|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr2_+_191273052_191273121	0.808088	SOX3_SOX2	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr14_+_23846328_23846461	0.807512	SOX3_SOX2	ENST00000382809.2|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr21_+_17791648_17791775	0.80668	SOX3_SOX2	ENST00000602892.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000418813.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000435697.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr11_+_114128522_114128553	0.799602	SOX3_SOX2	ENST00000535401.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr11_-_76155700_76155736	0.798179	SOX3_SOX2	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr2_+_208394658_208394692	0.795689	SOX3_SOX2	ENST00000421139.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr10_+_97803151_97803348	0.79536	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr12_+_22778291_22778357	0.795346	SOX3_SOX2	ENST00000545979.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr14_-_91884150_91884234	0.794333	SOX3_SOX2	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr6_+_135502466_135502489	0.794042	SOX3_SOX2	ENST00000367814.4|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr15_+_85923797_85923844	0.79125	SOX3_SOX2	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr1_+_12834984_12834984	0.781993	SOX3_SOX2	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr12_+_69979113_69979155	0.778774	SOX3_SOX2	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr19_+_34663551_34663564	0.775751	SOX3_SOX2	ENST00000586157.1|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr17_+_35851570_35851667	0.77419	SOX3_SOX2	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr3_-_148804275_148804346	0.774032	SOX3_SOX2	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr9_-_126030817_126030906	0.770557	SOX3_SOX2	ENST00000348403.5|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000447404.2|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000360998.3|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein
hg19_v2_chr8_-_27469196_27469294	0.77	SOX3_SOX2	ENST00000546343.1|CLU|ENSG00000120885.15|clusterin 	ENST00000560566.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr16_+_3068393_3068446	0.768717	SOX3_SOX2	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr5_-_38595498_38595514	0.765108	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr10_-_25241499_25241541	0.763433	SOX3_SOX2	ENST00000376378.1|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000376376.3|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000320152.6|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1
hg19_v2_chr9_-_130617029_130617040	0.763373	SOX3_SOX2	ENST00000373203.4|ENG|ENSG00000106991.9|endoglin
hg19_v2_chr11_-_89224638_89224653	0.762841	SOX3_SOX2	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr8_+_11660227_11660306	0.761871	SOX3_SOX2	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr15_+_25200074_25200105	0.759765	SOX3_SOX2	ENST00000390687.4|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000584968.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000346403.6|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000554227.2|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N
hg19_v2_chrX_-_24665208_24665275	0.759113	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr2_+_61293021_61293093	0.757019	SOX3_SOX2	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr4_-_138453559_138453572	0.756148	SOX3_SOX2	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr12_+_9142131_9142229	0.755406	SOX3_SOX2	ENST00000356986.3|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1 	ENST00000266551.4|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr17_+_59489112_59489112	0.754745	SOX3_SOX2	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chr8_-_27468945_27468948	0.754162	SOX3_SOX2	ENST00000405140.3|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr17_+_61851504_61851570	0.752954	SOX3_SOX2	ENST00000359353.5|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42 	ENST00000389924.2|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42
hg19_v2_chr6_-_28303901_28303975	0.752802	SOX3_SOX2	ENST00000439158.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000446474.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000414431.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000344279.6|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000453745.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr5_+_140743859_140743898	0.752124	SOX3_SOX2	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr11_-_2906979_2907111	0.752058	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr19_-_41985048_41985051	0.747527	SOX3_SOX2	ENST00000599801.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000595063.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000598215.1|AC011526.1|ENSG00000267107.2|AC011526.1
hg19_v2_chr22_-_22090043_22090058	0.746168	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr17_-_61777090_61777221	0.745882	SOX3_SOX2	ENST00000578061.1|LIMD2|ENSG00000136490.4|LIM domain containing 2
hg19_v2_chr8_-_101962777_101962805	0.74282	SOX3_SOX2	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr1_+_205682497_205682497	0.742056	SOX3_SOX2	ENST00000598338.1|AC119673.1|ENSG00000268313.1|AC119673.1
hg19_v2_chr9_+_90112741_90112761	0.741926	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr12_-_8803128_8803164	0.741496	SOX3_SOX2	ENST00000543467.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr4_-_22444733_22444767	0.73735	SOX3_SOX2	ENST00000508133.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr11_+_93861993_93862102	0.737228	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr12_-_25055177_25055258	0.737058	SOX3_SOX2	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr14_-_73493825_73493920	0.735419	SOX3_SOX2	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr19_-_42806842_42806880	0.733991	SOX3_SOX2	ENST00000596265.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr7_-_148580563_148580601	0.732774	SOX3_SOX2	ENST00000476773.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr5_+_138677515_138677581	0.731156	SOX3_SOX2	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr13_-_45150392_45150472	0.730938	SOX3_SOX2	ENST00000501704.2|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr1_+_16085244_16085255	0.730365	SOX3_SOX2	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr6_-_47277634_47277651	0.729606	SOX3_SOX2	ENST00000296861.2|TNFRSF21|ENSG00000146072.6|tumor necrosis factor receptor superfamily, member 21
hg19_v2_chr5_+_140593509_140593509	0.729476	SOX3_SOX2	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chr7_+_12726474_12726542	0.727797	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr1_+_100818156_100818210	0.724466	SOX3_SOX2	ENST00000336454.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr13_+_97874574_97874609	0.716374	SOX3_SOX2	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr4_+_54243917_54244006	0.716154	SOX3_SOX2	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr17_+_4046462_4046550	0.715667	SOX3_SOX2	ENST00000577075.2|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000575251.1|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000301391.3|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2
hg19_v2_chr15_-_34659349_34659479	0.713853	SOX3_SOX2	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr12_+_69979446_69979471	0.709294	SOX3_SOX2	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr6_-_31763408_31763545	0.706899	SOX3_SOX2	ENST00000444930.2|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr5_-_1112141_1112164	0.706175	SOX3_SOX2	ENST00000264930.5|SLC12A7|ENSG00000113504.15|solute carrier family 12 (potassium/chloride transporter), member 7
hg19_v2_chr2_+_179059188_179059250	0.701972	SOX3_SOX2	ENST00000392505.2|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000359685.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000357080.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000409045.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr2_+_65283506_65283527	0.701918	SOX3_SOX2	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr7_-_148581360_148581425	0.701649	SOX3_SOX2	ENST00000320356.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000541220.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000483967.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000536783.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr1_+_93913665_93913705	0.699622	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr1_-_68698197_68698214	0.6984	SOX3_SOX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr19_-_12992244_12992272	0.697576	SOX3_SOX2	ENST00000538460.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chr19_+_34287751_34287807	0.697118	SOX3_SOX2	ENST00000590771.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000589786.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000284006.6|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000588881.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15
hg19_v2_chr18_+_6729725_6730042	0.695793	SOX3_SOX2	ENST00000400091.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000583410.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000584387.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr1_+_100818009_100818072	0.69472	SOX3_SOX2	ENST00000370125.2|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000361544.6|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000370124.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr12_+_53443963_53443970	0.692681	SOX3_SOX2	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr5_+_140753444_140753651	0.690661	SOX3_SOX2	ENST00000517434.1|PCDHGA6|ENSG00000253731.1|protocadherin gamma subfamily A, 6
hg19_v2_chr2_+_181845298_181845378	0.688051	SOX3_SOX2	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr2_-_180129484_180129574	0.687377	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr12_-_50643664_50643679	0.686726	SOX3_SOX2	ENST00000550592.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chrX_+_135252050_135252085	0.681686	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr5_-_95158375_95158485	0.679292	SOX3_SOX2	ENST00000512469.2|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000379979.4|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000505427.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000508780.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr17_+_7608511_7608538	0.678785	SOX3_SOX2	ENST00000226091.2|EFNB3|ENSG00000108947.4|ephrin-B3
hg19_v2_chr14_+_105941118_105941196	0.676861	SOX3_SOX2	ENST00000550577.1|CRIP2|ENSG00000182809.6|cysteine-rich protein 2 	ENST00000538259.2|CRIP2|ENSG00000182809.6|cysteine-rich protein 2
hg19_v2_chr1_+_32538492_32538508	0.676687	SOX3_SOX2	ENST00000336294.5|TMEM39B|ENSG00000121775.13|transmembrane protein 39B
hg19_v2_chr11_+_128563652_128563689	0.676036	SOX3_SOX2	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr20_-_43977055_43977073	0.673075	SOX3_SOX2	ENST00000372733.3|SDC4|ENSG00000124145.5|syndecan 4 	ENST00000537976.1|SDC4|ENSG00000124145.5|syndecan 4
hg19_v2_chr2_-_235405168_235405277	0.672699	SOX3_SOX2	ENST00000339728.3|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr10_-_13390270_13390316	0.670325	SOX3_SOX2	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr10_+_114710211_114710229	0.669551	SOX3_SOX2	ENST00000349937.2|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369397.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr15_-_50647274_50647336	0.669388	SOX3_SOX2	ENST00000543881.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr12_+_53443680_53443858	0.668805	SOX3_SOX2	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr19_+_21324863_21324880	0.66548	SOX3_SOX2	ENST00000598331.1|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr19_-_23941639_23941672	0.663473	SOX3_SOX2	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr7_-_105516923_105516982	0.660056	SOX3_SOX2	ENST00000478915.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr12_-_6716569_6716642	0.659943	SOX3_SOX2	ENST00000544040.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000545942.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr8_-_27468842_27468878	0.653452	SOX3_SOX2	ENST00000523500.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr21_-_40685504_40685516	0.652618	SOX3_SOX2	ENST00000380800.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr12_-_9913489_9913506	0.649683	SOX3_SOX2	ENST00000228434.3|CD69|ENSG00000110848.4|CD69 molecule 	ENST00000536709.1|CD69|ENSG00000110848.4|CD69 molecule
hg19_v2_chr6_-_31697977_31698052	0.644498	SOX3_SOX2	ENST00000375787.2|DDAH2|ENSG00000213722.4|dimethylarginine dimethylaminohydrolase 2
hg19_v2_chr1_-_26232951_26232959	0.643497	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr19_+_10713112_10713198	0.641597	SOX3_SOX2	ENST00000590382.1|SLC44A2|ENSG00000129353.10|solute carrier family 44 (choline transporter), member 2 	ENST00000407327.4|SLC44A2|ENSG00000129353.10|solute carrier family 44 (choline transporter), member 2
hg19_v2_chr5_+_140625147_140625147	0.636176	SOX3_SOX2	ENST00000231173.3|PCDHB15|ENSG00000113248.3|protocadherin beta 15
hg19_v2_chr7_+_134551583_134551599	0.635303	SOX3_SOX2	ENST00000435928.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr17_-_53046058_53046146	0.633765	SOX3_SOX2	ENST00000571584.1|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast) 	ENST00000299335.3|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast)
hg19_v2_chr10_+_30722866_30722969	0.633687	SOX3_SOX2	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr9_-_36400857_36400902	0.632331	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr2_+_65283529_65283599	0.631846	SOX3_SOX2	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr2_-_157189180_157189290	0.631823	SOX3_SOX2	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr4_+_113152978_113152989	0.629279	SOX3_SOX2	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr19_+_47105309_47105329	0.628181	SOX3_SOX2	ENST00000599839.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000596362.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr2_-_160472952_160473080	0.627542	SOX3_SOX2	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr15_+_69373184_69373202	0.625078	SOX3_SOX2	ENST00000558147.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000440444.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277
hg19_v2_chr5_+_140800638_140800795	0.624864	SOX3_SOX2	ENST00000398587.2|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11 	ENST00000518882.1|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11
hg19_v2_chr6_-_91006627_91006641	0.624439	SOX3_SOX2	ENST00000537989.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr15_+_85144217_85144281	0.623992	SOX3_SOX2	ENST00000540936.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000448803.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546275.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546148.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000442073.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000334141.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000358472.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000502939.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000379358.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000327179.6|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2
hg19_v2_chr22_+_30792846_30792978	0.623551	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr2_+_239756671_239756732	0.621997	SOX3_SOX2	ENST00000448943.2|TWIST2|ENSG00000233608.2|twist family bHLH transcription factor 2
hg19_v2_chr13_-_31736132_31736176	0.621448	SOX3_SOX2	ENST00000429785.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chrX_+_107069063_107069123	0.618466	SOX3_SOX2	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr2_+_170590321_170590408	0.617908	SOX3_SOX2	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr17_+_57642886_57643006	0.617716	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr1_-_9970227_9970356	0.616962	SOX3_SOX2	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr11_+_12695944_12695989	0.614308	SOX3_SOX2	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr19_-_42806919_42806958	0.614237	SOX3_SOX2	ENST00000595530.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 	ENST00000538771.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 	ENST00000601865.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr5_-_54281407_54281429	0.613573	SOX3_SOX2	ENST00000381403.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr16_+_29818857_29819023	0.612832	SOX3_SOX2	ENST00000567444.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr6_-_111136513_111136525	0.611723	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr3_+_186648274_186648301	0.611595	SOX3_SOX2	ENST00000169298.3|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr20_-_48184638_48184694	0.609702	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr2_+_69240511_69240532	0.609629	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chrX_-_2847366_2847394	0.609597	SOX3_SOX2	ENST00000381154.1|ARSD|ENSG00000006756.11|arylsulfatase D
hg19_v2_chr14_+_101299520_101299615	0.608429	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr3_+_14860469_14860469	0.604002	SOX3_SOX2	ENST00000285046.5|FGD5|ENSG00000154783.6|FYVE, RhoGEF and PH domain containing 5
hg19_v2_chr12_+_112204691_112204781	0.602701	SOX3_SOX2	ENST00000416293.3|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial) 	ENST00000261733.2|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial)
hg19_v2_chr14_-_50999307_50999367	0.601315	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr22_+_30792980_30793047	0.599739	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr21_+_17792672_17792775	0.599281	SOX3_SOX2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr6_-_46889694_46889719	0.598847	SOX3_SOX2	ENST00000283296.7|GPR116|ENSG00000069122.14|G protein-coupled receptor 116 	ENST00000362015.4|GPR116|ENSG00000069122.14|G protein-coupled receptor 116 	ENST00000456426.2|GPR116|ENSG00000069122.14|G protein-coupled receptor 116
hg19_v2_chr3_+_186648307_186648375	0.59751	SOX3_SOX2	ENST00000457772.2|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 	ENST00000455441.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 	ENST00000427315.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr18_-_53253323_53253359	0.597488	SOX3_SOX2	ENST00000540999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000563888.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr8_+_79578282_79578334	0.596847	SOX3_SOX2	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr10_-_62704005_62704045	0.596817	SOX3_SOX2	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr15_-_52263937_52264003	0.595444	SOX3_SOX2	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr19_-_3029011_3029174	0.595191	SOX3_SOX2	ENST00000590536.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000587137.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000455444.2|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000262953.6|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)
hg19_v2_chr18_-_53089723_53089786	0.593459	SOX3_SOX2	ENST00000561992.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562512.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr15_+_52311398_52311461	0.592603	SOX3_SOX2	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr6_-_2962331_2962391	0.590603	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr20_-_4795747_4795769	0.590544	SOX3_SOX2	ENST00000379376.2|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr2_+_181845843_181845859	0.590189	SOX3_SOX2	ENST00000602710.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr2_+_160590469_160590485	0.589313	SOX3_SOX2	ENST00000409591.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr14_+_32546145_32546239	0.58813	SOX3_SOX2	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr12_-_12419703_12419811	0.587516	SOX3_SOX2	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr1_-_226926864_226927038	0.587443	SOX3_SOX2	ENST00000429204.1|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B 	ENST00000366784.1|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B
hg19_v2_chr3_+_20081515_20081570	0.587395	SOX3_SOX2	ENST00000263754.4|KAT2B|ENSG00000114166.7|K(lysine) acetyltransferase 2B
hg19_v2_chr16_-_28550320_28550345	0.586402	SOX3_SOX2	ENST00000395641.2|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr20_+_11898507_11898565	0.585088	SOX3_SOX2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr4_-_25865159_25865382	0.583228	SOX3_SOX2	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr11_-_124311054_124311054	0.580912	SOX3_SOX2	ENST00000328064.2|OR8B8|ENSG00000197125.2|olfactory receptor, family 8, subfamily B, member 8
hg19_v2_chrX_+_135579670_135579715	0.579861	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr19_-_42806723_42806795	0.579764	SOX3_SOX2	ENST00000262890.3|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr3_-_183735731_183735803	0.579763	SOX3_SOX2	ENST00000334444.6|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr12_-_96793844_96793855	0.579735	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr15_-_73076030_73076126	0.579371	SOX3_SOX2	ENST00000311669.8|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr15_-_49338624_49338700	0.579236	SOX3_SOX2	ENST00000261847.3|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000380927.2|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000559424.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr11_-_47574664_47574669	0.57918	SOX3_SOX2	ENST00000310513.5|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1 	ENST00000531165.1|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1
hg19_v2_chr11_-_6677018_6677085	0.579008	SOX3_SOX2	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr19_-_42806444_42806500	0.578321	SOX3_SOX2	ENST00000594989.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr1_+_43766642_43766667	0.577497	SOX3_SOX2	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr5_+_130599701_130599716	0.577229	SOX3_SOX2	ENST00000395246.1|CDC42SE2|ENSG00000158985.9|CDC42 small effector 2
hg19_v2_chr7_-_32931387_32931509	0.575809	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr2_-_198299726_198299815	0.575513	SOX3_SOX2	ENST00000409915.4|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000487698.1|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000414963.2|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000335508.6|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa
hg19_v2_chr22_+_39052632_39052692	0.574341	SOX3_SOX2	ENST00000411557.1|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000396811.2|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000216029.3|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000416285.1|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila)
hg19_v2_chr12_-_6716534_6716557	0.572329	SOX3_SOX2	ENST00000544484.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000309577.6|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000357008.2|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr10_-_65028938_65028989	0.572	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr11_+_46402744_46402777	0.568206	SOX3_SOX2	ENST00000533952.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr12_-_57400227_57400245	0.565175	SOX3_SOX2	ENST00000300101.2|ZBTB39|ENSG00000166860.2|zinc finger and BTB domain containing 39
hg19_v2_chr5_+_140480083_140480234	0.563862	SOX3_SOX2	ENST00000231130.2|PCDHB3|ENSG00000113205.2|protocadherin beta 3
hg19_v2_chrX_+_51927919_51927991	0.562999	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr16_-_46865047_46865103	0.561865	SOX3_SOX2	ENST00000394806.2|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr1_+_32538520_32538612	0.559987	SOX3_SOX2	ENST00000438825.1|TMEM39B|ENSG00000121775.13|transmembrane protein 39B 	ENST00000456834.2|TMEM39B|ENSG00000121775.13|transmembrane protein 39B 	ENST00000373634.4|TMEM39B|ENSG00000121775.13|transmembrane protein 39B 	ENST00000427288.1|TMEM39B|ENSG00000121775.13|transmembrane protein 39B
hg19_v2_chr17_-_46623441_46623441	0.559475	SOX3_SOX2	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr6_+_29364416_29364416	0.558546	SOX3_SOX2	ENST00000383555.2|OR12D2|ENSG00000168787.4|olfactory receptor, family 12, subfamily D, member 2 (gene/pseudogene)
hg19_v2_chr7_+_94537542_94537591	0.557888	SOX3_SOX2	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr19_-_40919271_40919294	0.554455	SOX3_SOX2	ENST00000291825.7|PRX|ENSG00000105227.10|periaxin 	ENST00000324001.7|PRX|ENSG00000105227.10|periaxin
hg19_v2_chr3_-_139258521_139258671	0.553703	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr5_-_16742330_16742344	0.553454	SOX3_SOX2	ENST00000505695.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000427430.2|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr19_+_8455077_8455083	0.551375	SOX3_SOX2	ENST00000328024.6|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr8_-_93115445_93115462	0.550695	SOX3_SOX2	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr6_-_2972075_2972090	0.549287	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr3_+_15643476_15643557	0.548287	SOX3_SOX2	ENST00000436193.1|BTD|ENSG00000169814.8|biotinidase 	ENST00000383778.4|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr18_-_53253112_53253199	0.547304	SOX3_SOX2	ENST00000568673.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562847.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000568147.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr19_+_48972459_48972490	0.546957	SOX3_SOX2	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr2_-_235405679_235405739	0.546377	SOX3_SOX2	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr19_+_36705504_36705644	0.545721	SOX3_SOX2	ENST00000456324.1|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr3_+_186915274_186915274	0.543509	SOX3_SOX2	ENST00000312295.4|RTP1|ENSG00000175077.5|receptor (chemosensory) transporter protein 1
hg19_v2_chr4_+_75023816_75023890	0.543336	SOX3_SOX2	ENST00000395759.2|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000331145.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000359107.5|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000325278.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
hg19_v2_chr10_-_33247124_33247207	0.542459	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr8_+_11660120_11660221	0.542184	SOX3_SOX2	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr2_+_90198535_90198535	0.539045	SOX3_SOX2	ENST00000390276.2|IGKV1D-12|ENSG00000240834.1|immunoglobulin kappa variable 1D-12
hg19_v2_chr1_-_1334685_1334722	0.538876	SOX3_SOX2	ENST00000400809.3|CCNL2|ENSG00000221978.7|cyclin L2 	ENST00000408918.4|CCNL2|ENSG00000221978.7|cyclin L2
hg19_v2_chr5_-_137090028_137090075	0.537908	SOX3_SOX2	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr21_+_38445539_38445596	0.537362	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr15_+_57210818_57210930	0.536347	SOX3_SOX2	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr20_-_30310797_30310901	0.535075	SOX3_SOX2	ENST00000422920.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr3_+_50192537_50192563	0.534686	SOX3_SOX2	ENST00000002829.3|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr3_+_50192499_50192534	0.532368	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr12_+_58120044_58120095	0.531101	SOX3_SOX2	ENST00000542466.2|AGAP2-AS1|ENSG00000255737.2|AGAP2 antisense RNA 1
hg19_v2_chr12_-_6772303_6772314	0.53041	SOX3_SOX2	ENST00000396807.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000446105.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000341550.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr17_-_3337135_3337135	0.529966	SOX3_SOX2	ENST00000248384.1|OR1E2|ENSG00000127780.3|olfactory receptor, family 1, subfamily E, member 2
hg19_v2_chr11_+_46402583_46402669	0.527472	SOX3_SOX2	ENST00000359803.3|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr17_+_75447326_75447457	0.52626	SOX3_SOX2	ENST00000591088.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr4_-_141677267_141677291	0.525565	SOX3_SOX2	ENST00000442267.2|TBC1D9|ENSG00000109436.7|TBC1 domain family, member 9 (with GRAM domain)
hg19_v2_chr4_+_113152881_113152912	0.525219	SOX3_SOX2	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr11_+_65265141_65265306	0.524289	SOX3_SOX2	ENST00000534336.1|MALAT1|ENSG00000251562.3|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
hg19_v2_chr3_-_183735651_183735727	0.524277	SOX3_SOX2	ENST00000427120.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000392579.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000382494.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000446941.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr20_+_34042962_34043028	0.523479	SOX3_SOX2	ENST00000446710.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa 	ENST00000420564.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa
hg19_v2_chr6_+_28109703_28109716	0.522816	SOX3_SOX2	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr3_+_15643245_15643318	0.52022	SOX3_SOX2	ENST00000303498.5|BTD|ENSG00000169814.8|biotinidase 	ENST00000437172.1|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr12_-_46766577_46766650	0.520112	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr7_+_77166592_77166653	0.519028	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr16_+_2880296_2880310	0.517851	SOX3_SOX2	ENST00000571723.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr2_-_70475586_70475646	0.517259	SOX3_SOX2	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr3_-_149095652_149095652	0.516704	SOX3_SOX2	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr1_-_26233423_26233482	0.514773	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr16_+_28875126_28875195	0.514504	SOX3_SOX2	ENST00000359285.5|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1 	ENST00000538342.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr3_+_159557637_159557650	0.513133	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr10_-_65028817_65028828	0.512728	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr4_-_22517620_22517712	0.51253	SOX3_SOX2	ENST00000502482.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125 	ENST00000334304.5|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr7_-_140178775_140178866	0.511167	SOX3_SOX2	ENST00000474576.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000473444.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000471104.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr15_-_57210769_57210803	0.50924	SOX3_SOX2	ENST00000559000.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr2_-_178128528_178128574	0.506167	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr6_+_36410762_36410858	0.50612	SOX3_SOX2	ENST00000483557.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000498267.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000544295.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000449081.2|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000536244.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000460983.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20
hg19_v2_chr3_-_105588231_105588396	0.504735	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr16_+_2880254_2880278	0.504455	SOX3_SOX2	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr2_+_10183651_10183713	0.50266	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chr12_-_64784471_64784503	0.501751	SOX3_SOX2	ENST00000333722.5|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr16_-_28503357_28503409	0.501352	SOX3_SOX2	ENST00000333496.9|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000561505.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000567963.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000354630.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000355477.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357076.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000565688.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000359984.7|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chr3_+_191046810_191046874	0.500877	SOX3_SOX2	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr1_-_150601588_150601631	0.500407	SOX3_SOX2	ENST00000513281.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000361631.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000361532.5|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr14_+_85996507_85996572	0.500344	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr16_-_25026641_25026698	0.49775	SOX3_SOX2	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr4_+_76649797_76650004	0.497208	SOX3_SOX2	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr8_-_120685608_120685693	0.497144	SOX3_SOX2	ENST00000427067.2|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chr7_+_128828713_128828713	0.495551	SOX3_SOX2	ENST00000249373.3|SMO|ENSG00000128602.5|smoothened, frizzled family receptor
hg19_v2_chr19_-_49865639_49865718	0.494939	SOX3_SOX2	ENST00000593945.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000601519.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000539846.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000596757.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000311227.2|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chrX_+_44703249_44703273	0.494821	SOX3_SOX2	ENST00000339042.4|DUSP21|ENSG00000189037.6|dual specificity phosphatase 21
hg19_v2_chr1_+_24286287_24286326	0.494171	SOX3_SOX2	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr14_-_20923195_20923270	0.493069	SOX3_SOX2	ENST00000206542.4|OSGEP|ENSG00000092094.6|O-sialoglycoprotein endopeptidase
hg19_v2_chr1_-_156051789_156051838	0.492814	SOX3_SOX2	ENST00000532414.2|MEX3A|ENSG00000254726.2|mex-3 RNA binding family member A
hg19_v2_chr2_+_181845074_181845118	0.492355	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr12_-_12491608_12491640	0.490667	SOX3_SOX2	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr8_-_95908902_95908927	0.490639	SOX3_SOX2	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr8_+_134125727_134125747	0.490292	SOX3_SOX2	ENST00000521107.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr13_+_39612485_39612599	0.490228	SOX3_SOX2	ENST00000379599.2|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr5_-_157002775_157002790	0.488439	SOX3_SOX2	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chrX_-_128657457_128657477	0.488269	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr10_+_180405_180429	0.488152	SOX3_SOX2	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr15_+_63335899_63336001	0.486961	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr12_-_24103954_24103972	0.485619	SOX3_SOX2	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chrX_-_51812268_51812368	0.484049	SOX3_SOX2	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr3_-_71353892_71353928	0.483431	SOX3_SOX2	ENST00000484350.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr11_-_62414070_62414104	0.481555	SOX3_SOX2	ENST00000540933.1|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000346178.4|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000356638.3|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000534779.1|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000525994.1|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB
hg19_v2_chr2_+_30370382_30370421	0.481536	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr16_-_28503080_28503304	0.48082	SOX3_SOX2	ENST00000565316.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000565778.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357857.9|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000568558.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357806.7|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chr8_-_105601134_105601252	0.480346	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr7_+_20370300_20370359	0.479464	SOX3_SOX2	ENST00000537992.1|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr4_-_139163491_139163510	0.479013	SOX3_SOX2	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr13_-_31736478_31736525	0.478034	SOX3_SOX2	ENST00000445273.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr1_-_11024258_11024258	0.476097	SOX3_SOX2	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr20_+_39657454_39657470	0.47495	SOX3_SOX2	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr1_-_8086343_8086378	0.474422	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr6_-_144385698_144385742	0.473714	SOX3_SOX2	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr20_-_30458019_30458083	0.470141	SOX3_SOX2	ENST00000486996.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15 	ENST00000398084.2|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr1_+_200708671_200708744	0.468914	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr12_-_31478428_31478469	0.468356	SOX3_SOX2	ENST00000543615.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr3_-_27763803_27763822	0.467767	SOX3_SOX2	ENST00000449599.1|EOMES|ENSG00000163508.8|eomesodermin
hg19_v2_chrX_+_51928002_51928017	0.467314	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr10_-_70092635_70092666	0.464894	SOX3_SOX2	ENST00000309049.4|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr5_+_43602750_43602838	0.464655	SOX3_SOX2	ENST00000505678.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512422.1|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000264663.5|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr9_+_107526443_107526477	0.462599	SOX3_SOX2	ENST00000374762.3|NIPSNAP3B|ENSG00000165028.7|nipsnap homolog 3B (C. elegans)
hg19_v2_chr7_-_38289173_38289173	0.460132	SOX3_SOX2	ENST00000436911.2|TRGC2|ENSG00000227191.2|T cell receptor gamma constant 2
hg19_v2_chr8_+_81398444_81398472	0.458741	SOX3_SOX2	ENST00000455036.3|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10 	ENST00000426744.2|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr8_+_42195972_42195991	0.45668	SOX3_SOX2	ENST00000532157.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000265421.4|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000520008.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr5_-_159739532_159739607	0.455637	SOX3_SOX2	ENST00000520748.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000393977.3|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000257536.7|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr12_-_117628253_117628308	0.455319	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr7_-_44229022_44229055	0.454829	SOX3_SOX2	ENST00000403799.3|GCK|ENSG00000106633.11|glucokinase (hexokinase 4)
hg19_v2_chr22_-_32651326_32651340	0.453853	SOX3_SOX2	ENST00000266086.4|SLC5A4|ENSG00000100191.4|solute carrier family 5 (glucose activated ion channel), member 4
hg19_v2_chr1_-_112046289_112046382	0.451288	SOX3_SOX2	ENST00000241356.4|ADORA3|ENSG00000121933.13|adenosine A3 receptor
hg19_v2_chr8_+_9911778_9911880	0.449947	SOX3_SOX2	ENST00000317173.4|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A 	ENST00000441698.2|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A
hg19_v2_chr3_-_138312971_138313132	0.449859	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr2_-_99347528_99347603	0.449417	SOX3_SOX2	ENST00000393487.1|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr9_-_140196703_140196744	0.449181	SOX3_SOX2	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr11_-_57417405_57417423	0.448869	SOX3_SOX2	ENST00000524669.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila) 	ENST00000300022.3|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr9_+_36036430_36036430	0.448177	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr14_+_23791159_23791231	0.447151	SOX3_SOX2	ENST00000557702.1|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr2_-_216257849_216257907	0.446327	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr16_-_31085033_31085078	0.446298	SOX3_SOX2	ENST00000414399.1|ZNF668|ENSG00000167394.8|zinc finger protein 668
hg19_v2_chr15_-_50647370_50647405	0.445177	SOX3_SOX2	ENST00000558970.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000396464.3|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000560825.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr4_-_110624564_110624739	0.44491	SOX3_SOX2	ENST00000352981.3|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000265164.2|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000505486.1|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase
hg19_v2_chr4_+_154125565_154125626	0.443252	SOX3_SOX2	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr19_+_7743387_7743387	0.442924	SOX3_SOX2	ENST00000597959.1|CTD-3214H19.16|ENSG00000269711.1|CTD-3214H19.16
hg19_v2_chr12_+_133657461_133657529	0.441826	SOX3_SOX2	ENST00000412146.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000544426.1|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440984.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000319849.3|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440550.2|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr13_+_106118592_106118619	0.441502	SOX3_SOX2	ENST00000375936.3|DAOA|ENSG00000182346.13|D-amino acid oxidase activator 	ENST00000329625.5|DAOA|ENSG00000182346.13|D-amino acid oxidase activator
hg19_v2_chr13_-_74708372_74708409	0.44063	SOX3_SOX2	ENST00000377666.4|KLF12|ENSG00000118922.12|Kruppel-like factor 12
hg19_v2_chr20_-_29994007_29994069	0.440326	SOX3_SOX2	ENST00000376314.2|DEFB121|ENSG00000204548.3|defensin, beta 121
hg19_v2_chr19_+_58790314_58790358	0.440091	SOX3_SOX2	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr2_+_153191706_153191751	0.438692	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr16_+_58497567_58497586	0.438251	SOX3_SOX2	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr1_-_114301503_114301576	0.438244	SOX3_SOX2	ENST00000447664.2|PHTF1|ENSG00000116793.11|putative homeodomain transcription factor 1
hg19_v2_chr9_+_116263639_116263707	0.437674	SOX3_SOX2	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr17_-_76719807_76719832	0.436466	SOX3_SOX2	ENST00000589297.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr22_-_32555275_32555296	0.436396	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr11_-_6341724_6341762	0.436173	SOX3_SOX2	ENST00000530979.1|PRKCDBP|ENSG00000170955.9|protein kinase C, delta binding protein
hg19_v2_chr6_-_127840453_127840507	0.434894	SOX3_SOX2	ENST00000556132.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr16_-_22385901_22385947	0.434086	SOX3_SOX2	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr14_-_22938665_22938690	0.432978	SOX3_SOX2	ENST00000535880.2|TRDV3|ENSG00000256590.2|T cell receptor delta variable 3
hg19_v2_chr18_+_72922710_72922733	0.432782	SOX3_SOX2	ENST00000322038.5|TSHZ1|ENSG00000179981.9|teashirt zinc finger homeobox 1
hg19_v2_chr19_-_12992274_12992332	0.431721	SOX3_SOX2	ENST00000592506.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal 	ENST00000222219.3|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chr1_+_97187318_97187380	0.431453	SOX3_SOX2	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr8_+_42196000_42196021	0.429869	SOX3_SOX2	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr22_-_44894178_44894203	0.425846	SOX3_SOX2	ENST00000341255.3|LDOC1L|ENSG00000188636.3|leucine zipper, down-regulated in cancer 1-like
hg19_v2_chr6_+_28193037_28193117	0.42507	SOX3_SOX2	ENST00000531981.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000425468.2|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000252207.5|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000531979.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000527436.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9
hg19_v2_chr9_-_110540419_110540419	0.42447	SOX3_SOX2	ENST00000398726.3|AL162389.1|ENSG00000214645.3|Uncharacterized protein
hg19_v2_chr15_-_47426320_47426320	0.424187	SOX3_SOX2	ENST00000557832.1|FKSG62|ENSG00000259752.1|FKSG62
hg19_v2_chr7_+_44836276_44836283	0.423104	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr2_-_153573965_153573982	0.421848	SOX3_SOX2	ENST00000448428.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr2_+_210444142_210444194	0.42168	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr10_-_30024716_30024739	0.421548	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr14_-_31676674_31676707	0.420734	SOX3_SOX2	ENST00000399332.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1 	ENST00000556224.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr15_+_72766651_72766680	0.419256	SOX3_SOX2	ENST00000379887.4|ARIH1|ENSG00000166233.8|ariadne RBR E3 ubiquitin protein ligase 1
hg19_v2_chr3_-_150690471_150690520	0.419171	SOX3_SOX2	ENST00000468836.1|CLRN1|ENSG00000163646.6|clarin 1 	ENST00000328863.4|CLRN1|ENSG00000163646.6|clarin 1
hg19_v2_chr11_-_14358620_14358712	0.418544	SOX3_SOX2	ENST00000531421.1|RRAS2|ENSG00000133818.8|related RAS viral (r-ras) oncogene homolog 2
hg19_v2_chr11_-_61129335_61129385	0.416265	SOX3_SOX2	ENST00000545361.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3 	ENST00000539128.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3 	ENST00000546151.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3 	ENST00000447532.2|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chr12_+_49761147_49761167	0.416046	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr3_-_101232019_101232085	0.415565	SOX3_SOX2	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr15_-_40331342_40331354	0.414471	SOX3_SOX2	ENST00000559081.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr3_+_52828805_52828821	0.414259	SOX3_SOX2	ENST00000416872.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3 	ENST00000449956.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3
hg19_v2_chr16_+_20499024_20499024	0.413824	SOX3_SOX2	ENST00000593357.1|AC137056.1|ENSG00000267824.1|Uncharacterized protein; cDNA FLJ34659 fis, clone KIDNE2018863
hg19_v2_chr17_-_46716647_46716665	0.41342	SOX3_SOX2	ENST00000608940.1|RP11-357H14.17|ENSG00000272763.1|RP11-357H14.17
hg19_v2_chr3_-_197024965_197025038	0.412401	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr15_-_60771128_60771277	0.409786	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr1_-_75198940_75199092	0.40872	SOX3_SOX2	ENST00000417775.1|CRYZ|ENSG00000116791.9|crystallin, zeta (quinone reductase)
hg19_v2_chr12_-_56615693_56615758	0.407899	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr3_+_43328004_43328095	0.407321	SOX3_SOX2	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr11_+_46402297_46402306	0.407252	SOX3_SOX2	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr4_-_100009856_100009902	0.406588	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr12_-_88974236_88974256	0.406562	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr9_+_136325089_136325144	0.405118	SOX3_SOX2	ENST00000291722.7|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000316948.4|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000540581.1|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1
hg19_v2_chr20_-_43150601_43150751	0.405062	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr6_-_41863098_41863120	0.404818	SOX3_SOX2	ENST00000373006.1|USP49|ENSG00000164663.9|ubiquitin specific peptidase 49
hg19_v2_chr2_-_74780176_74780259	0.404438	SOX3_SOX2	ENST00000409549.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr22_-_22090064_22090127	0.404218	SOX3_SOX2	ENST00000339468.3|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr4_+_54243798_54243854	0.404164	SOX3_SOX2	ENST00000337488.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000358575.5|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000507922.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr5_+_140772381_140772381	0.402876	SOX3_SOX2	ENST00000398604.2|PCDHGA8|ENSG00000253767.1|protocadherin gamma subfamily A, 8
hg19_v2_chr3_-_49466686_49466764	0.402222	SOX3_SOX2	ENST00000273598.3|NICN1|ENSG00000145029.7|nicolin 1 	ENST00000436744.2|NICN1|ENSG00000145029.7|nicolin 1
hg19_v2_chr9_-_36401155_36401219	0.402093	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr4_+_71570430_71570536	0.401272	SOX3_SOX2	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chrX_+_70503037_70503095	0.401151	SOX3_SOX2	ENST00000535149.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr4_-_83351294_83351417	0.40097	SOX3_SOX2	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr8_-_8318847_8318883	0.39942	SOX3_SOX2	ENST00000521218.1|CTA-398F10.2|ENSG00000254153.1|CTA-398F10.2
hg19_v2_chr19_-_21950332_21950356	0.397829	SOX3_SOX2	ENST00000598026.1|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr17_+_19186292_19186414	0.395614	SOX3_SOX2	ENST00000395626.1|EPN2|ENSG00000072134.11|epsin 2 	ENST00000571254.1|EPN2|ENSG00000072134.11|epsin 2
hg19_v2_chr2_-_238499131_238499206	0.395525	SOX3_SOX2	ENST00000538644.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr3_-_142608001_142608053	0.394934	SOX3_SOX2	ENST00000295992.3|PCOLCE2|ENSG00000163710.3|procollagen C-endopeptidase enhancer 2
hg19_v2_chr6_-_166582107_166582188	0.394584	SOX3_SOX2	ENST00000296946.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000461348.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000366871.3|T|ENSG00000164458.5|T, brachyury homolog (mouse)
hg19_v2_chr14_+_54976546_54976602	0.394282	SOX3_SOX2	ENST00000216420.7|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr17_+_30814707_30814814	0.393783	SOX3_SOX2	ENST00000584792.1|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr5_+_140729649_140729828	0.393558	SOX3_SOX2	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr3_-_138313161_138313198	0.391604	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr1_-_155947951_155947974	0.389658	SOX3_SOX2	ENST00000313695.7|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2 	ENST00000497907.1|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr16_-_48419361_48419408	0.389622	SOX3_SOX2	ENST00000394725.2|SIAH1|ENSG00000196470.7|siah E3 ubiquitin protein ligase 1
hg19_v2_chr1_-_225840747_225840860	0.389388	SOX3_SOX2	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chrX_+_16737718_16737778	0.389366	SOX3_SOX2	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr15_+_52043758_52043809	0.38895	SOX3_SOX2	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr13_-_110959478_110959511	0.388487	SOX3_SOX2	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chr9_-_132586378_132586433	0.387791	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr1_-_33815486_33815517	0.387601	SOX3_SOX2	ENST00000373418.3|PHC2|ENSG00000134686.12|polyhomeotic homolog 2 (Drosophila)
hg19_v2_chr20_-_50418972_50419029	0.386979	SOX3_SOX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr20_+_42086525_42086568	0.386572	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr3_-_125775629_125775681	0.386349	SOX3_SOX2	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr4_+_47487285_47487366	0.38602	SOX3_SOX2	ENST00000273859.3|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D 	ENST00000504445.1|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D
hg19_v2_chr8_-_117043_117043	0.385435	SOX3_SOX2	ENST00000320901.3|OR4F21|ENSG00000176269.3|olfactory receptor, family 4, subfamily F, member 21
hg19_v2_chr9_+_116263778_116263793	0.383789	SOX3_SOX2	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr1_-_153643442_153643524	0.382917	SOX3_SOX2	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr17_+_2240775_2240812	0.382694	SOX3_SOX2	ENST00000268989.3|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2 	ENST00000426855.2|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr5_+_138089100_138089146	0.382665	SOX3_SOX2	ENST00000520339.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000355078.5|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000302763.7|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000518910.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr13_+_39612442_39612482	0.382241	SOX3_SOX2	ENST00000470258.1|NHLRC3|ENSG00000188811.8|NHL repeat containing 3 	ENST00000379600.3|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr10_-_49482907_49482941	0.381877	SOX3_SOX2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr5_+_140474181_140474227	0.380354	SOX3_SOX2	ENST00000194155.4|PCDHB2|ENSG00000112852.4|protocadherin beta 2
hg19_v2_chr9_-_95298314_95298340	0.380161	SOX3_SOX2	ENST00000344604.5|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific 	ENST00000375540.1|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr17_-_76921459_76921478	0.375175	SOX3_SOX2	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr4_+_71588372_71588404	0.3741	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr6_-_41715128_41715142	0.37401	SOX3_SOX2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr20_-_50418947_50418964	0.373265	SOX3_SOX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr6_+_42981922_42982047	0.372348	SOX3_SOX2	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr10_-_70092671_70092806	0.371121	SOX3_SOX2	ENST00000358769.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000432941.1|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000495025.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr17_-_38804061_38804112	0.370841	SOX3_SOX2	ENST00000474246.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000377808.4|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000578044.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580419.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000400122.3|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580654.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000577721.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000478349.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000431889.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
hg19_v2_chr3_-_58196688_58196706	0.370398	SOX3_SOX2	ENST00000486455.1|DNASE1L3|ENSG00000163687.9|deoxyribonuclease I-like 3
hg19_v2_chr14_+_24779340_24779371	0.369922	SOX3_SOX2	ENST00000533293.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2 	ENST00000543919.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2
hg19_v2_chrX_+_36053908_36053908	0.369829	SOX3_SOX2	ENST00000378660.2|CHDC2|ENSG00000176034.8|calponin homology domain containing 2
hg19_v2_chr3_-_197024394_197024740	0.369541	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr12_+_80750134_80750134	0.36932	SOX3_SOX2	ENST00000546620.1|OTOGL|ENSG00000165899.6|otogelin-like
hg19_v2_chr14_-_65569057_65569119	0.36809	SOX3_SOX2	ENST00000555419.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000341653.2|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr9_-_88896977_88897023	0.367179	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr2_+_70056762_70056847	0.366343	SOX3_SOX2	ENST00000282570.3|GMCL1|ENSG00000087338.4|germ cell-less, spermatogenesis associated 1
hg19_v2_chr8_-_33424636_33424653	0.365255	SOX3_SOX2	ENST00000256257.1|RNF122|ENSG00000133874.1|ring finger protein 122
hg19_v2_chr7_+_102036798_102036882	0.36502	SOX3_SOX2	ENST00000397912.3|PRKRIP1|ENSG00000128563.9|PRKR interacting protein 1 (IL11 inducible) 	ENST00000354783.4|PRKRIP1|ENSG00000128563.9|PRKR interacting protein 1 (IL11 inducible)
hg19_v2_chr5_+_138678131_138678169	0.36485	SOX3_SOX2	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr12_-_49075941_49076001	0.363894	SOX3_SOX2	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr19_+_55888186_55888204	0.363617	SOX3_SOX2	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr7_-_99869799_99869855	0.362249	SOX3_SOX2	ENST00000436886.2|GATS|ENSG00000160844.6|GATS, stromal antigen 3 opposite strand
hg19_v2_chr19_+_11708259_11708309	0.361125	SOX3_SOX2	ENST00000587939.1|ZNF627|ENSG00000198551.5|zinc finger protein 627 	ENST00000588174.1|ZNF627|ENSG00000198551.5|zinc finger protein 627
hg19_v2_chr19_+_16187816_16187838	0.359265	SOX3_SOX2	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr22_-_20004330_20004364	0.359007	SOX3_SOX2	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr16_+_4545853_4545864	0.358734	SOX3_SOX2	ENST00000575129.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000398595.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000414777.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr10_+_76585303_76585354	0.35813	SOX3_SOX2	ENST00000372725.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B
hg19_v2_chr6_+_28092338_28092412	0.357042	SOX3_SOX2	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr13_+_76362974_76363015	0.355109	SOX3_SOX2	ENST00000497947.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr12_+_19358228_19358259	0.3549	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr12_-_15942503_15942514	0.35453	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chrX_-_24665353_24665382	0.354072	SOX3_SOX2	ENST00000379144.2|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr19_-_44143939_44144010	0.354059	SOX3_SOX2	ENST00000222374.2|CADM4|ENSG00000105767.2|cell adhesion molecule 4
hg19_v2_chr14_-_23451467_23451713	0.353743	SOX3_SOX2	ENST00000555074.1|RP11-298I3.5|ENSG00000259132.1|RP11-298I3.5	ENST00000361265.4|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr19_-_44439387_44439419	0.352343	SOX3_SOX2	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr8_+_92261516_92261555	0.352275	SOX3_SOX2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr10_-_72142345_72142395	0.351126	SOX3_SOX2	ENST00000373224.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000446961.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000358141.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000357631.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20
hg19_v2_chr7_-_100425112_100425121	0.350887	SOX3_SOX2	ENST00000358173.3|EPHB4|ENSG00000196411.5|EPH receptor B4
hg19_v2_chr11_-_133715394_133715433	0.349801	SOX3_SOX2	ENST00000299140.3|SPATA19|ENSG00000166118.3|spermatogenesis associated 19 	ENST00000532889.1|SPATA19|ENSG00000166118.3|spermatogenesis associated 19
hg19_v2_chr4_-_85887503_85887544	0.349628	SOX3_SOX2	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr3_+_44626446_44626477	0.34954	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr20_+_6748311_6748352	0.34916	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr19_-_17375541_17375605	0.348237	SOX3_SOX2	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr12_+_22778116_22778139	0.347756	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr17_-_18585541_18585572	0.347314	SOX3_SOX2	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr5_+_169931249_169931364	0.347004	SOX3_SOX2	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr19_-_12833361_12833386	0.345897	SOX3_SOX2	ENST00000592287.1|TNPO2|ENSG00000105576.11|transportin 2
hg19_v2_chr1_-_155942086_155942145	0.345214	SOX3_SOX2	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr22_+_44568825_44568837	0.344923	SOX3_SOX2	ENST00000422871.1|PARVG|ENSG00000138964.12|parvin, gamma
hg19_v2_chr16_+_53241854_53241953	0.344639	SOX3_SOX2	ENST00000565803.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr2_-_183106641_183106754	0.344216	SOX3_SOX2	ENST00000346717.4|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr1_-_153029980_153030013	0.342854	SOX3_SOX2	ENST00000392653.2|SPRR2A|ENSG00000241794.1|small proline-rich protein 2A
hg19_v2_chr1_+_47881744_47881744	0.342719	SOX3_SOX2	ENST00000335071.2|FOXE3|ENSG00000186790.4|forkhead box E3
hg19_v2_chrX_-_10645773_10645795	0.342594	SOX3_SOX2	ENST00000453318.2|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr1_-_68698222_68698266	0.342116	SOX3_SOX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr10_+_99349450_99349458	0.341628	SOX3_SOX2	ENST00000370640.3|C10orf62|ENSG00000203942.3|chromosome 10 open reading frame 62
hg19_v2_chr17_-_17740287_17740316	0.341048	SOX3_SOX2	ENST00000355815.4|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1 	ENST00000261646.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr5_+_175792459_175792513	0.339388	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr5_+_85913721_85913790	0.339118	SOX3_SOX2	ENST00000247655.3|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000509578.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000515763.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc
hg19_v2_chr13_-_30881621_30881675	0.33803	SOX3_SOX2	ENST00000380615.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr1_-_51796987_51797018	0.337234	SOX3_SOX2	ENST00000262676.5|TTC39A|ENSG00000085831.11|tetratricopeptide repeat domain 39A
hg19_v2_chr5_+_72112470_72112533	0.337104	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr16_+_3254247_3254247	0.335346	SOX3_SOX2	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chr17_+_9066252_9066271	0.334983	SOX3_SOX2	ENST00000436734.1|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr14_-_35182994_35183034	0.334238	SOX3_SOX2	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr11_+_65339820_65340051	0.332799	SOX3_SOX2	ENST00000316409.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000449319.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000530349.1|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B
hg19_v2_chr7_+_134464376_134464413	0.332331	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr7_+_95401851_95401876	0.331966	SOX3_SOX2	ENST00000447467.2|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chr5_+_8839844_8839877	0.331912	SOX3_SOX2	ENST00000510229.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3	ENST00000506655.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3	ENST00000510067.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3
hg19_v2_chr17_-_76713100_76713122	0.33162	SOX3_SOX2	ENST00000585509.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr7_+_30185406_30185417	0.331228	SOX3_SOX2	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr2_+_210444748_210444770	0.331216	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr14_+_96968802_96968895	0.331207	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr1_-_157108266_157108347	0.329549	SOX3_SOX2	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr11_-_102323489_102323576	0.329019	SOX3_SOX2	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr10_-_735553_735683	0.32824	SOX3_SOX2	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr12_-_117628333_117628339	0.327635	SOX3_SOX2	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr16_-_19533404_19533467	0.327257	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr12_-_15942309_15942330	0.327051	SOX3_SOX2	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr3_+_159570722_159570733	0.326655	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr6_-_127664683_127664718	0.326487	SOX3_SOX2	ENST00000528402.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454591.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr4_+_88343952_88343970	0.326316	SOX3_SOX2	ENST00000440591.2|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr1_-_155880672_155880715	0.326053	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr3_-_128294929_128294929	0.325822	SOX3_SOX2	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr2_+_9346892_9346948	0.325388	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr8_+_82644669_82644738	0.325348	SOX3_SOX2	ENST00000297265.4|CHMP4C|ENSG00000164695.4|charged multivesicular body protein 4C
hg19_v2_chr11_+_46402482_46402502	0.324453	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr17_+_73452545_73452685	0.323492	SOX3_SOX2	ENST00000314256.7|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chr4_+_144434584_144434709	0.322658	SOX3_SOX2	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr6_+_32132360_32132437	0.322596	SOX3_SOX2	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr5_-_74062930_74062980	0.321984	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr7_+_128312346_128312371	0.320176	SOX3_SOX2	ENST00000480462.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000378704.3|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000477515.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2
hg19_v2_chr15_+_81293254_81293304	0.318669	SOX3_SOX2	ENST00000267984.2|MESDC1|ENSG00000140406.2|mesoderm development candidate 1
hg19_v2_chr1_-_115259337_115259515	0.318509	SOX3_SOX2	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr13_-_60737898_60737910	0.316983	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr2_-_197791441_197791525	0.316947	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr19_-_23433144_23433204	0.315945	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr15_+_85923856_85923987	0.315611	SOX3_SOX2	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr16_+_16434185_16434185	0.314965	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr9_-_36400213_36400296	0.314789	SOX3_SOX2	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chrX_+_44732757_44732860	0.314038	SOX3_SOX2	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr5_+_140557371_140557371	0.313772	SOX3_SOX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr6_+_88054530_88054567	0.313195	SOX3_SOX2	ENST00000388923.4|C6orf163|ENSG00000203872.6|chromosome 6 open reading frame 163
hg19_v2_chr8_+_86376081_86376142	0.311502	SOX3_SOX2	ENST00000285379.5|CA2|ENSG00000104267.5|carbonic anhydrase II
hg19_v2_chr19_-_38743878_38743928	0.310034	SOX3_SOX2	ENST00000587515.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr16_-_70239683_70239683	0.309025	SOX3_SOX2	ENST00000601706.1|AC009060.1|ENSG00000269746.1|Uncharacterized protein
hg19_v2_chr6_-_13328564_13328815	0.307756	SOX3_SOX2	ENST00000606530.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607658.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000343141.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000356436.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379300.3|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000452989.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000450347.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000422136.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000446018.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379291.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379307.2|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000606370.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607230.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7
hg19_v2_chr2_-_190649082_190649102	0.306048	SOX3_SOX2	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chrX_-_71792477_71792720	0.30587	SOX3_SOX2	ENST00000421523.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000415409.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373559.4|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373556.3|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373560.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373583.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000429103.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373571.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373554.1|HDAC8|ENSG00000147099.15|histone deacetylase 8
hg19_v2_chr16_-_28303360_28303393	0.305842	SOX3_SOX2	ENST00000501520.1|RP11-57A19.2|ENSG00000246465.1|RP11-57A19.2
hg19_v2_chr5_+_69321074_69321200	0.305095	SOX3_SOX2	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr19_-_39826639_39826825	0.303985	SOX3_SOX2	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr5_+_140213815_140213969	0.303413	SOX3_SOX2	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr18_+_11751466_11751475	0.302162	SOX3_SOX2	ENST00000535121.1|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr20_-_17511962_17512033	0.302006	SOX3_SOX2	ENST00000377873.3|BFSP1|ENSG00000125864.7|beaded filament structural protein 1, filensin
hg19_v2_chr3_-_149510553_149510610	0.301235	SOX3_SOX2	ENST00000462519.2|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000446160.1|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000383050.3|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1
hg19_v2_chr5_-_14871866_14871916	0.300652	SOX3_SOX2	ENST00000284268.6|ANKH|ENSG00000154122.8|ANKH inorganic pyrophosphate transport regulator
hg19_v2_chr2_+_179059365_179059376	0.300464	SOX3_SOX2	ENST00000190611.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr11_-_95522639_95522725	0.300415	SOX3_SOX2	ENST00000536839.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr2_-_3521518_3521518	0.299293	SOX3_SOX2	ENST00000382093.5|ADI1|ENSG00000182551.9|acireductone dioxygenase 1
hg19_v2_chr19_+_45971246_45971265	0.298455	SOX3_SOX2	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr2_+_169312725_169312810	0.298325	SOX3_SOX2	ENST00000392687.4|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr15_-_50647347_50647366	0.297864	SOX3_SOX2	ENST00000220429.8|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000429662.2|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr22_-_31688431_31688520	0.297681	SOX3_SOX2	ENST00000402249.3|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000443175.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000215912.5|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000441972.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr18_+_11751493_11751507	0.297431	SOX3_SOX2	ENST00000269162.5|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr11_+_66624527_66624592	0.297177	SOX3_SOX2	ENST00000393952.3|LRFN4|ENSG00000173621.8|leucine rich repeat and fibronectin type III domain containing 4
hg19_v2_chr7_+_73868120_73868216	0.296144	SOX3_SOX2	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr6_+_46620676_46620696	0.296103	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr3_-_88108212_88108223	0.296081	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr14_-_22005062_22005082	0.295153	SOX3_SOX2	ENST00000317492.5|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr12_-_109915098_109915138	0.293837	SOX3_SOX2	ENST00000542858.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000542262.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000424763.2|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10
hg19_v2_chr19_-_38746979_38747050	0.293808	SOX3_SOX2	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr5_+_140787600_140787770	0.293024	SOX3_SOX2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr16_-_30798492_30798535	0.292956	SOX3_SOX2	ENST00000262525.4|ZNF629|ENSG00000102870.4|zinc finger protein 629
hg19_v2_chr2_-_178128250_178128300	0.29288	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr10_-_54531406_54531460	0.292725	SOX3_SOX2	ENST00000373968.3|MBL2|ENSG00000165471.6|mannose-binding lectin (protein C) 2, soluble
hg19_v2_chr15_-_101792137_101792159	0.292555	SOX3_SOX2	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr16_+_70258261_70258261	0.292502	SOX3_SOX2	ENST00000594734.1|FKSG63|ENSG00000269866.1|FKSG63
hg19_v2_chr8_-_38386175_38386180	0.292132	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr1_-_46152174_46152302	0.291911	SOX3_SOX2	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chrX_+_102469997_102470094	0.291535	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr19_-_37019562_37019593	0.290976	SOX3_SOX2	ENST00000523638.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr11_-_130184470_130184533	0.290541	SOX3_SOX2	ENST00000357899.4|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44 	ENST00000397753.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr17_-_46690839_46690884	0.29022	SOX3_SOX2	ENST00000498634.2|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr6_+_31620191_31620238	0.290088	SOX3_SOX2	ENST00000375918.2|APOM|ENSG00000204444.6|apolipoprotein M 	ENST00000375920.4|APOM|ENSG00000204444.6|apolipoprotein M
hg19_v2_chr11_-_105892937_105893130	0.289649	SOX3_SOX2	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr11_+_114271251_114271300	0.289138	SOX3_SOX2	ENST00000375490.5|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr10_-_33246722_33246830	0.288749	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr5_-_141338627_141338627	0.288003	SOX3_SOX2	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr16_+_67063142_67063153	0.287674	SOX3_SOX2	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr5_+_133707252_133707295	0.287305	SOX3_SOX2	ENST00000506787.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B 	ENST00000507277.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr6_+_34857019_34857117	0.286935	SOX3_SOX2	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr3_-_165555200_165555260	0.285811	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr12_+_56477093_56477110	0.285633	SOX3_SOX2	ENST00000549672.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000415288.2|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr19_-_58400148_58400364	0.285117	SOX3_SOX2	ENST00000595048.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000600634.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000595295.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000596604.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597342.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597807.1|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr20_-_5591626_5591677	0.283564	SOX3_SOX2	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr7_-_99679324_99679371	0.282357	SOX3_SOX2	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr19_+_23299777_23299844	0.282245	SOX3_SOX2	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr6_-_161695074_161695112	0.281779	SOX3_SOX2	ENST00000457520.2|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366906.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000320285.4|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr8_+_94752349_94752349	0.281578	SOX3_SOX2	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chrX_+_46404928_46404964	0.280776	SOX3_SOX2	ENST00000421685.2|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head) 	ENST00000609887.1|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head)
hg19_v2_chr5_+_59726565_59726565	0.280723	SOX3_SOX2	ENST00000412930.2|FKSG52|ENSG00000224838.2|FKSG52
hg19_v2_chr12_+_133613937_133613994	0.280008	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr6_+_44355257_44355315	0.279814	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chrX_+_21958814_21958864	0.279426	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr1_-_168106536_168106821	0.279303	SOX3_SOX2	ENST00000537209.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000361697.2|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000546300.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000367835.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161
hg19_v2_chr18_-_74844727_74844800	0.279151	SOX3_SOX2	ENST00000355994.2|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000579129.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr20_-_34542548_34542575	0.278911	SOX3_SOX2	ENST00000305978.2|SCAND1|ENSG00000171222.6|SCAN domain containing 1
hg19_v2_chr4_-_83350580_83350600	0.278843	SOX3_SOX2	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr5_+_125758813_125758845	0.277938	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr20_-_44718538_44718612	0.27775	SOX3_SOX2	ENST00000290231.6|NCOA5|ENSG00000124160.7|nuclear receptor coactivator 5 	ENST00000372291.3|NCOA5|ENSG00000124160.7|nuclear receptor coactivator 5
hg19_v2_chr11_-_61582579_61582763	0.277606	SOX3_SOX2	ENST00000539419.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545245.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545405.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000542506.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1
hg19_v2_chr8_+_8559406_8559465	0.277241	SOX3_SOX2	ENST00000519106.1|CLDN23|ENSG00000253958.1|claudin 23
hg19_v2_chr14_+_24407940_24407940	0.27703	SOX3_SOX2	ENST00000354854.1|DHRS4-AS1|ENSG00000197775.1|DHRS4-AS1
hg19_v2_chr6_-_24877490_24877583	0.276677	SOX3_SOX2	ENST00000540914.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B 	ENST00000378023.4|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr1_-_108743471_108743499	0.276454	SOX3_SOX2	ENST00000569674.1|SLC25A24|ENSG00000085491.11|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
hg19_v2_chr20_-_34252759_34252843	0.276304	SOX3_SOX2	ENST00000414711.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000416778.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397442.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000440240.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000412056.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000352393.4|CPNE1|ENSG00000214078.7|copine I 	ENST00000359646.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000458038.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000424458.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000420363.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000434795.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374104.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437100.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000414664.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374114.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr1_-_200379129_200379174	0.276002	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr19_+_1269324_1269350	0.275415	SOX3_SOX2	ENST00000589710.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000588230.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000413636.2|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000586472.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000589686.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000444172.2|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000587323.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000320936.5|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000587896.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000589235.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000591659.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein
hg19_v2_chr1_+_162351503_162351523	0.275259	SOX3_SOX2	ENST00000458626.2|C1orf226|ENSG00000239887.3|chromosome 1 open reading frame 226
hg19_v2_chr1_+_151739131_151739177	0.273855	SOX3_SOX2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr6_+_41040678_41040722	0.27314	SOX3_SOX2	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr2_-_64881018_64881064	0.272582	SOX3_SOX2	ENST00000313349.3|SERTAD2|ENSG00000179833.4|SERTA domain containing 2
hg19_v2_chr20_-_30458491_30458550	0.271338	SOX3_SOX2	ENST00000339738.5|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr18_-_32924372_32924430	0.271242	SOX3_SOX2	ENST00000261332.6|ZNF24|ENSG00000172466.11|zinc finger protein 24 	ENST00000399061.3|ZNF24|ENSG00000172466.11|zinc finger protein 24
hg19_v2_chrX_-_16730688_16730814	0.270302	SOX3_SOX2	ENST00000359276.4|CTPS2|ENSG00000047230.10|CTP synthase 2
hg19_v2_chr14_+_39644387_39644417	0.269892	SOX3_SOX2	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr19_-_37019136_37019178	0.269824	SOX3_SOX2	ENST00000592282.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr10_-_13390021_13390040	0.268066	SOX3_SOX2	ENST00000537130.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr4_+_141178440_141178472	0.267988	SOX3_SOX2	ENST00000394205.3|SCOC|ENSG00000153130.13|short coiled-coil protein
hg19_v2_chr15_-_74421477_74421619	0.267287	SOX3_SOX2	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr3_-_194354010_194354164	0.267095	SOX3_SOX2	ENST00000381975.3|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000347147.4|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000473092.1|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000392432.2|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000273580.7|TMEM44|ENSG00000145014.13|transmembrane protein 44
hg19_v2_chr8_+_107738343_107738413	0.266588	SOX3_SOX2	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr2_-_73964447_73964527	0.266539	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chr19_-_17375527_17375538	0.26645	SOX3_SOX2	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr1_-_150602035_150602095	0.266365	SOX3_SOX2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chrX_-_77041685_77041716	0.265651	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr1_-_91487013_91487070	0.264424	SOX3_SOX2	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr5_-_54281491_54281517	0.263975	SOX3_SOX2	ENST00000381405.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr11_+_34643600_34643750	0.26322	SOX3_SOX2	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr11_+_55944094_55944094	0.263129	SOX3_SOX2	ENST00000312298.1|OR5J2|ENSG00000174957.1|olfactory receptor, family 5, subfamily J, member 2
hg19_v2_chr8_+_67104323_67104350	0.263028	SOX3_SOX2	ENST00000518412.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967 	ENST00000518035.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967 	ENST00000517725.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967
hg19_v2_chr3_-_71294304_71294332	0.26282	SOX3_SOX2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr1_-_110155671_110155685	0.261717	SOX3_SOX2	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr12_-_52845910_52845938	0.261151	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr6_+_46620705_46620732	0.261035	SOX3_SOX2	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr11_-_102323740_102323780	0.260167	SOX3_SOX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr14_+_91580357_91580454	0.260128	SOX3_SOX2	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr17_-_7590745_7590856	0.259998	SOX3_SOX2	ENST00000514944.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000503591.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000455263.2|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000420246.2|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000445888.2|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000509690.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000604348.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000269305.4|TP53|ENSG00000141510.11|tumor protein p53
hg19_v2_chr14_+_102414651_102414721	0.25952	SOX3_SOX2	ENST00000607414.1|RP11-1017G21.5|ENSG00000271780.1|RP11-1017G21.5
hg19_v2_chr2_+_207220463_207220463	0.259384	SOX3_SOX2	ENST00000598562.1|AC017081.1|ENSG00000269633.1|Uncharacterized protein
hg19_v2_chrX_-_17878827_17878846	0.259179	SOX3_SOX2	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr15_+_93447675_93447703	0.258764	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chrX_-_73072534_73072588	0.258472	SOX3_SOX2	ENST00000429829.1|XIST|ENSG00000229807.5|X inactive specific transcript (non-protein coding)
hg19_v2_chr1_-_224033596_224033697	0.257435	SOX3_SOX2	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr19_+_41257084_41257125	0.257258	SOX3_SOX2	ENST00000601393.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr1_-_9811600_9811639	0.256481	SOX3_SOX2	ENST00000435891.1|CLSTN1|ENSG00000171603.12|calsyntenin 1
hg19_v2_chr6_+_18387570_18387588	0.255748	SOX3_SOX2	ENST00000259939.3|RNF144B|ENSG00000137393.8|ring finger protein 144B
hg19_v2_chr1_+_209602156_209602183	0.255741	SOX3_SOX2	ENST00000429156.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000366437.3|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000603283.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000431096.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding)
hg19_v2_chr10_+_115511213_115511272	0.25518	SOX3_SOX2	ENST00000361048.1|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr13_-_30881134_30881181	0.255138	SOX3_SOX2	ENST00000380617.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1 	ENST00000441394.1|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr1_-_6545502_6545548	0.254761	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr17_+_63133587_63133627	0.254757	SOX3_SOX2	ENST00000449996.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9 	ENST00000262406.9|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr4_-_140216948_140216999	0.254446	SOX3_SOX2	ENST00000265500.4|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chrX_-_24690771_24690794	0.254191	SOX3_SOX2	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr14_-_24553834_24553850	0.253698	SOX3_SOX2	ENST00000397002.2|NRL|ENSG00000129535.8|neural retina leucine zipper
hg19_v2_chr12_-_71551868_71551882	0.253692	SOX3_SOX2	ENST00000247829.3|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr11_+_60691924_60691966	0.253557	SOX3_SOX2	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr1_-_21503337_21503407	0.253298	SOX3_SOX2	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr7_-_8302298_8302323	0.252821	SOX3_SOX2	ENST00000446305.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr17_-_73775839_73775868	0.252525	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr14_+_50234827_50234886	0.252273	SOX3_SOX2	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr7_+_16828866_16828866	0.250696	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr14_+_77882741_77882741	0.250123	SOX3_SOX2	ENST00000595520.1|FKSG61|ENSG00000268156.1|FKSG61
hg19_v2_chr10_+_17272608_17272692	0.250021	SOX3_SOX2	ENST00000421459.2|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr16_-_8962853_8962878	0.248966	SOX3_SOX2	ENST00000565287.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa 	ENST00000311052.5|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr16_-_5116025_5116111	0.248157	SOX3_SOX2	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr12_+_49761273_49761330	0.24627	SOX3_SOX2	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr19_-_44285401_44285446	0.24595	SOX3_SOX2	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr1_-_26232522_26232644	0.244851	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr2_+_69240415_69240438	0.244206	SOX3_SOX2	ENST00000409829.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr11_-_11643540_11643566	0.243962	SOX3_SOX2	ENST00000227756.4|GALNT18|ENSG00000110328.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
hg19_v2_chr2_+_10262857_10262873	0.243781	SOX3_SOX2	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr21_-_37270727_37270727	0.243368	SOX3_SOX2	ENST00000599809.1|FKSG68|ENSG00000267812.1|FKSG68
hg19_v2_chr10_+_22605374_22605387	0.243134	SOX3_SOX2	ENST00000448361.1|COMMD3|ENSG00000148444.11|COMM domain containing 3
hg19_v2_chr1_-_169555779_169555826	0.242733	SOX3_SOX2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr3_+_9834758_9834801	0.242515	SOX3_SOX2	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chr17_-_73781567_73781629	0.242366	SOX3_SOX2	ENST00000586607.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr6_-_161695042_161695064	0.242095	SOX3_SOX2	ENST00000366908.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366911.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366905.3|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr5_+_172386517_172386523	0.241811	SOX3_SOX2	ENST00000519522.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr1_-_17445930_17445954	0.241799	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr5_+_175288631_175288690	0.241217	SOX3_SOX2	ENST00000509837.1|CPLX2|ENSG00000145920.10|complexin 2
hg19_v2_chr11_-_9336234_9336327	0.24079	SOX3_SOX2	ENST00000528080.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr3_-_27525865_27525887	0.240582	SOX3_SOX2	ENST00000445684.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr6_+_35704804_35704813	0.240229	SOX3_SOX2	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr20_+_30697510_30697547	0.239496	SOX3_SOX2	ENST00000217315.5|TM9SF4|ENSG00000101337.11|transmembrane 9 superfamily protein member 4
hg19_v2_chr6_-_27440460_27440505	0.239062	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr12_+_104337515_104337574	0.238839	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr15_-_83876758_83876770	0.238508	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr12_+_133614119_133614166	0.237917	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr7_+_101459263_101459310	0.237841	SOX3_SOX2	ENST00000292538.4|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000393824.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000547394.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000360264.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000425244.2|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chr19_-_44100275_44100302	0.237593	SOX3_SOX2	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr5_+_125758865_125758876	0.237459	SOX3_SOX2	ENST00000542322.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000544396.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr10_+_180643_180764	0.237015	SOX3_SOX2	ENST00000509513.2|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397959.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr21_-_40685477_40685496	0.236811	SOX3_SOX2	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr9_+_95947198_95947225	0.236706	SOX3_SOX2	ENST00000448039.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000297954.4|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000395477.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000395475.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000349097.3|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000427277.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000356055.3|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000432730.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2
hg19_v2_chrX_+_38420783_38420805	0.235798	SOX3_SOX2	ENST00000422612.2|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000286824.6|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000545599.1|TSPAN7|ENSG00000156298.8|tetraspanin 7
hg19_v2_chr3_+_49977440_49977482	0.235676	SOX3_SOX2	ENST00000442092.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000266022.4|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000443081.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr11_-_130184555_130184581	0.235299	SOX3_SOX2	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr17_+_9728828_9728868	0.234951	SOX3_SOX2	ENST00000262441.5|GLP2R|ENSG00000065325.8|glucagon-like peptide 2 receptor
hg19_v2_chr14_-_94789663_94789731	0.234489	SOX3_SOX2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chr15_-_70388599_70388776	0.234345	SOX3_SOX2	ENST00000560996.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558201.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr6_+_35704855_35704874	0.233973	SOX3_SOX2	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr6_-_108582168_108582256	0.233807	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chr18_+_11851383_11851399	0.233735	SOX3_SOX2	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr3_+_186435137_186435158	0.233394	SOX3_SOX2	ENST00000447445.1|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr8_-_16043780_16043783	0.232879	SOX3_SOX2	ENST00000445506.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr20_-_49547910_49547988	0.231654	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr13_-_113242439_113242488	0.231479	SOX3_SOX2	ENST00000375669.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3 	ENST00000261965.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3
hg19_v2_chr13_+_76210448_76210494	0.231345	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr2_+_226265364_226265364	0.231327	SOX3_SOX2	ENST00000272907.6|NYAP2|ENSG00000144460.10|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
hg19_v2_chr22_+_23522552_23522748	0.230832	SOX3_SOX2	ENST00000359540.3|BCR|ENSG00000186716.15|breakpoint cluster region 	ENST00000398512.5|BCR|ENSG00000186716.15|breakpoint cluster region
hg19_v2_chr12_+_49121213_49121228	0.229956	SOX3_SOX2	ENST00000548380.1|LINC00935|ENSG00000257987.1|long intergenic non-protein coding RNA 935
hg19_v2_chr3_+_111260980_111261016	0.229619	SOX3_SOX2	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr10_+_72164135_72164135	0.228675	SOX3_SOX2	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr6_+_72596406_72596454	0.228577	SOX3_SOX2	ENST00000491071.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr14_+_100259666_100259685	0.228488	SOX3_SOX2	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr10_+_22605304_22605372	0.227845	SOX3_SOX2	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr12_+_104680659_104680777	0.227697	SOX3_SOX2	ENST00000526691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000388854.3|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000354940.6|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526390.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531689.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr18_+_7946941_7946952	0.227416	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr16_-_279405_279462	0.227373	SOX3_SOX2	ENST00000430864.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000293872.8|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000337351.4|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000397783.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae)
hg19_v2_chr7_+_11013491_11013553	0.226612	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr2_+_27237615_27237667	0.226504	SOX3_SOX2	ENST00000458529.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3 	ENST00000402218.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3
hg19_v2_chrX_+_147582228_147582320	0.225837	SOX3_SOX2	ENST00000342251.3|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr15_-_86338100_86338132	0.225686	SOX3_SOX2	ENST00000536947.1|KLHL25|ENSG00000183655.11|kelch-like family member 25
hg19_v2_chr14_-_89021077_89021230	0.225166	SOX3_SOX2	ENST00000556564.1|PTPN21|ENSG00000070778.8|protein tyrosine phosphatase, non-receptor type 21
hg19_v2_chr9_+_124088860_124088895	0.224588	SOX3_SOX2	ENST00000373806.1|GSN|ENSG00000148180.12|gelsolin
hg19_v2_chrX_+_102631844_102632109	0.224305	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr14_-_58618896_58618939	0.224078	SOX3_SOX2	ENST00000267485.7|C14orf37|ENSG00000139971.11|chromosome 14 open reading frame 37
hg19_v2_chr6_-_132834184_132834337	0.223635	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr11_-_10562710_10562782	0.223041	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr1_-_221915418_221915518	0.223033	SOX3_SOX2	ENST00000323825.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10 	ENST00000366899.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10
hg19_v2_chr11_+_67007518_67007533	0.222472	SOX3_SOX2	ENST00000530342.1|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A 	ENST00000308783.5|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A
hg19_v2_chr10_+_114709999_114710031	0.222168	SOX3_SOX2	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr15_-_60771280_60771351	0.222082	SOX3_SOX2	ENST00000560072.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560406.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560520.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000261520.4|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000439632.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr7_+_114562909_114563131	0.221679	SOX3_SOX2	ENST00000423503.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing 	ENST00000427207.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing
hg19_v2_chr5_+_102201430_102201478	0.21987	SOX3_SOX2	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chrX_+_119384607_119384720	0.219559	SOX3_SOX2	ENST00000326624.2|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33 	ENST00000557385.1|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33
hg19_v2_chr20_+_58713514_58713554	0.219551	SOX3_SOX2	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chr5_+_102201509_102201528	0.218538	SOX3_SOX2	ENST00000348126.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000379787.4|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr16_+_24550857_24550878	0.218176	SOX3_SOX2	ENST00000568015.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr11_-_89224508_89224563	0.218086	SOX3_SOX2	ENST00000525196.1|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr3_+_46538981_46538981	0.21686	SOX3_SOX2	ENST00000296142.3|RTP3|ENSG00000163825.3|receptor (chemosensory) transporter protein 3
hg19_v2_chr8_+_124194875_124194921	0.216773	SOX3_SOX2	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr19_+_13134772_13134846	0.216746	SOX3_SOX2	ENST00000587760.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor) 	ENST00000585575.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor)
hg19_v2_chr7_-_142120321_142120369	0.216404	SOX3_SOX2	ENST00000390377.1|TRBV7-7|ENSG00000253291.1|T cell receptor beta variable 7-7
hg19_v2_chr1_+_213123976_213124009	0.216358	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr12_-_50790267_50790405	0.216154	SOX3_SOX2	ENST00000327337.5|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A 	ENST00000543111.1|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A
hg19_v2_chr2_-_54197915_54197977	0.216114	SOX3_SOX2	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr17_-_3030875_3030875	0.21609	SOX3_SOX2	ENST00000328890.2|OR1G1|ENSG00000183024.3|olfactory receptor, family 1, subfamily G, member 1
hg19_v2_chr13_+_103451548_103451561	0.215569	SOX3_SOX2	ENST00000419638.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr3_-_114343768_114343822	0.21538	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr20_-_45318230_45318418	0.214316	SOX3_SOX2	ENST00000372114.3|TP53RK|ENSG00000172315.5|TP53 regulating kinase
hg19_v2_chr12_-_125401885_125401914	0.214224	SOX3_SOX2	ENST00000542416.1|UBC|ENSG00000150991.10|ubiquitin C
hg19_v2_chr14_-_21994525_21994634	0.21402	SOX3_SOX2	ENST00000538754.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr15_-_86338134_86338261	0.213845	SOX3_SOX2	ENST00000337975.5|KLHL25|ENSG00000183655.11|kelch-like family member 25
hg19_v2_chr11_-_114271139_114271247	0.213719	SOX3_SOX2	ENST00000325636.4|C11orf71|ENSG00000180425.7|chromosome 11 open reading frame 71
hg19_v2_chr9_+_125703282_125703337	0.213693	SOX3_SOX2	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr19_+_56989609_56989625	0.213682	SOX3_SOX2	ENST00000601875.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr15_+_79166065_79166163	0.213493	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr2_-_97535708_97535843	0.212884	SOX3_SOX2	ENST00000305476.5|SEMA4C|ENSG00000168758.6|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
hg19_v2_chr16_+_15528332_15528385	0.212566	SOX3_SOX2	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr16_-_18887627_18887627	0.211998	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr14_+_22433675_22433680	0.211457	SOX3_SOX2	ENST00000390442.3|TRAV12-3|ENSG00000211794.3|T cell receptor alpha variable 12-3
hg19_v2_chr7_-_148787768_148787874	0.211344	SOX3_SOX2	ENST00000491431.1|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000451334.3|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000316286.9|ZNF786|ENSG00000197362.9|zinc finger protein 786
hg19_v2_chr22_-_23484246_23484283	0.210735	SOX3_SOX2	ENST00000216036.4|RTDR1|ENSG00000100218.7|rhabdoid tumor deletion region gene 1
hg19_v2_chr11_+_17316870_17316897	0.210541	SOX3_SOX2	ENST00000458064.2|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr6_+_134758827_134758863	0.209952	SOX3_SOX2	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr21_-_34143971_34143983	0.209412	SOX3_SOX2	ENST00000290178.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr11_+_65122216_65122238	0.209072	SOX3_SOX2	ENST00000309880.5|TIGD3|ENSG00000173825.6|tigger transposable element derived 3
hg19_v2_chr19_-_58400372_58400411	0.208964	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr19_-_44123734_44123796	0.208869	SOX3_SOX2	ENST00000598676.1|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr4_+_15683369_15683390	0.208859	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr12_-_114211444_114211468	0.208797	SOX3_SOX2	ENST00000510694.2|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000550223.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr7_+_6144514_6144614	0.208015	SOX3_SOX2	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chr11_+_64058758_64058797	0.207735	SOX3_SOX2	ENST00000538767.1|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr19_+_45409011_45409069	0.207576	SOX3_SOX2	ENST00000252486.4|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000446996.1|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000434152.1|APOE|ENSG00000130203.5|apolipoprotein E
hg19_v2_chr7_+_73245193_73245337	0.207474	SOX3_SOX2	ENST00000340958.2|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr14_+_64971292_64971415	0.207351	SOX3_SOX2	ENST00000358738.3|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1 	ENST00000394712.2|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr15_-_20193370_20193370	0.207012	SOX3_SOX2	ENST00000558565.2|IGHV3OR15-7|ENSG00000259490.2|immunoglobulin heavy variable 3/OR15-7 (pseudogene)
hg19_v2_chr14_-_23451845_23451856	0.206722	SOX3_SOX2	ENST00000262713.2|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr12_-_82152444_82152475	0.206581	SOX3_SOX2	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr7_+_99613195_99613206	0.20657	SOX3_SOX2	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr1_-_115300592_115300648	0.206527	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr7_+_55980331_55980331	0.206316	SOX3_SOX2	ENST00000429591.2|ZNF713|ENSG00000178665.10|zinc finger protein 713
hg19_v2_chrX_-_15683147_15683159	0.205817	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr7_-_5821225_5821312	0.205679	SOX3_SOX2	ENST00000416985.1|RNF216|ENSG00000011275.14|ring finger protein 216
hg19_v2_chr13_+_34392185_34392191	0.205109	SOX3_SOX2	ENST00000380071.3|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr1_+_92632542_92632609	0.204958	SOX3_SOX2	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chrX_+_37850026_37850070	0.20466	SOX3_SOX2	ENST00000341016.3|CXorf27|ENSG00000187516.5|chromosome X open reading frame 27
hg19_v2_chr12_+_109915179_109915220	0.204554	SOX3_SOX2	ENST00000434735.2|UBE3B|ENSG00000151148.9|ubiquitin protein ligase E3B
hg19_v2_chr15_+_89631647_89631725	0.204454	SOX3_SOX2	ENST00000569550.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565066.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565973.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr16_+_67063036_67063088	0.203988	SOX3_SOX2	ENST00000290858.6|CBFB|ENSG00000067955.9|core-binding factor, beta subunit 	ENST00000564034.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr6_-_72130472_72130519	0.203084	SOX3_SOX2	ENST00000426635.2|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr1_-_17766198_17766232	0.202862	SOX3_SOX2	ENST00000375436.4|RCC2|ENSG00000179051.9|regulator of chromosome condensation 2
hg19_v2_chr14_+_96968707_96968788	0.202611	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr19_+_41256764_41256825	0.202329	SOX3_SOX2	ENST00000243563.3|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000601253.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000597353.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000599362.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr1_-_156828810_156828914	0.201306	SOX3_SOX2	ENST00000368195.3|INSRR|ENSG00000027644.4|insulin receptor-related receptor
hg19_v2_chr7_+_69064300_69064342	0.201131	SOX3_SOX2	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr5_+_66300446_66300463	0.200868	SOX3_SOX2	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr3_+_113616317_113616364	0.200626	SOX3_SOX2	ENST00000440446.2|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C 	ENST00000488680.1|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C
hg19_v2_chr16_-_71918033_71918107	0.200622	SOX3_SOX2	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr3_+_49058444_49058618	0.199905	SOX3_SOX2	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr12_+_133613878_133613924	0.19977	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr2_-_39348137_39348212	0.198874	SOX3_SOX2	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr15_+_96869165_96869183	0.197697	SOX3_SOX2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr1_+_90460661_90460745	0.196797	SOX3_SOX2	ENST00000340281.4|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000361911.5|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000370447.3|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000455342.2|ZNF326|ENSG00000162664.12|zinc finger protein 326
hg19_v2_chr20_+_21283941_21284007	0.196577	SOX3_SOX2	ENST00000377191.3|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2 	ENST00000430571.2|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr4_-_83351005_83351019	0.196429	SOX3_SOX2	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr16_+_84801852_84801877	0.196246	SOX3_SOX2	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr15_-_40331356_40331389	0.196021	SOX3_SOX2	ENST00000560773.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein) 	ENST00000267884.6|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr6_+_108881012_108881038	0.194925	SOX3_SOX2	ENST00000343882.6|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr9_+_27524283_27524312	0.194343	SOX3_SOX2	ENST00000276943.2|IFNK|ENSG00000147896.3|interferon, kappa
hg19_v2_chr11_+_64058820_64058881	0.1941	SOX3_SOX2	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr3_+_54157480_54157547	0.19393	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr4_-_87281196_87281219	0.193783	SOX3_SOX2	ENST00000359221.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr5_+_150816595_150816647	0.193767	SOX3_SOX2	ENST00000520111.1|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1 	ENST00000520701.1|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1 	ENST00000429484.2|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1
hg19_v2_chr5_+_140767452_140767452	0.191832	SOX3_SOX2	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr2_-_79313973_79314059	0.191235	SOX3_SOX2	ENST00000454188.1|REG1B|ENSG00000172023.3|regenerating islet-derived 1 beta
hg19_v2_chr14_+_70078303_70078321	0.19121	SOX3_SOX2	ENST00000342745.4|KIAA0247|ENSG00000100647.7|KIAA0247
hg19_v2_chr12_-_95611149_95611249	0.191154	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr8_+_124194752_124194835	0.190326	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr2_+_223536428_223536505	0.190323	SOX3_SOX2	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr3_+_123813543_123813587	0.190243	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr1_-_156265438_156265485	0.190102	SOX3_SOX2	ENST00000362007.1|C1orf85|ENSG00000198715.7|chromosome 1 open reading frame 85
hg19_v2_chr11_-_82708435_82708472	0.189972	SOX3_SOX2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr11_+_125496400_125496464	0.18967	SOX3_SOX2	ENST00000524737.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr5_-_147211190_147211219	0.18948	SOX3_SOX2	ENST00000510027.2|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr5_+_162930114_162930125	0.189003	SOX3_SOX2	ENST00000280969.5|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta
hg19_v2_chr19_-_53770972_53770972	0.188875	SOX3_SOX2	ENST00000311170.4|VN1R4|ENSG00000228567.2|vomeronasal 1 receptor 4
hg19_v2_chr5_-_156593273_156593276	0.18709	SOX3_SOX2	ENST00000302938.4|FAM71B|ENSG00000170613.4|family with sequence similarity 71, member B
hg19_v2_chr19_-_36705547_36705597	0.186976	SOX3_SOX2	ENST00000304116.5|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr7_+_2671663_2671790	0.186446	SOX3_SOX2	ENST00000407643.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr17_+_42148225_42148317	0.186101	SOX3_SOX2	ENST00000591696.1|G6PC3|ENSG00000141349.4|glucose 6 phosphatase, catalytic, 3
hg19_v2_chrX_+_103031421_103031546	0.185904	SOX3_SOX2	ENST00000433491.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000418604.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000443502.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr9_-_39239171_39239171	0.185139	SOX3_SOX2	ENST00000358144.2|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3
hg19_v2_chr12_-_120907374_120907454	0.18401	SOX3_SOX2	ENST00000550458.1|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr20_+_21284416_21284490	0.18399	SOX3_SOX2	ENST00000539513.1|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr8_+_91803695_91803778	0.183601	SOX3_SOX2	ENST00000417640.2|NECAB1|ENSG00000123119.7|N-terminal EF-hand calcium binding protein 1
hg19_v2_chr8_+_67405755_67405789	0.183464	SOX3_SOX2	ENST00000521495.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr6_-_127664475_127664543	0.183285	SOX3_SOX2	ENST00000474289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000534442.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000368289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000525745.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000430841.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr2_-_158182410_158182446	0.183144	SOX3_SOX2	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr2_-_204400013_204400058	0.182751	SOX3_SOX2	ENST00000374489.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000374488.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000308091.4|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000453034.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000420371.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr2_+_66662690_66662711	0.18231	SOX3_SOX2	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr3_+_141106643_141106681	0.182159	SOX3_SOX2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr11_+_76092353_76092400	0.18215	SOX3_SOX2	ENST00000530460.1|RP11-111M22.2|ENSG00000179240.4|Homo sapiens putative uncharacterized protein FLJ37770-like (LOC100506127), mRNA. 	ENST00000321844.4|RP11-111M22.2|ENSG00000179240.4|Homo sapiens putative uncharacterized protein FLJ37770-like (LOC100506127), mRNA.
hg19_v2_chr2_+_66662510_66662532	0.181988	SOX3_SOX2	ENST00000272369.9|MEIS1|ENSG00000143995.15|Meis homeobox 1 	ENST00000407092.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr3_+_123813509_123813528	0.181593	SOX3_SOX2	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr11_-_70672645_70672711	0.181411	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr5_-_115872142_115872154	0.18129	SOX3_SOX2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr1_-_3528034_3528077	0.181033	SOX3_SOX2	ENST00000356575.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr16_-_8962544_8962584	0.180502	SOX3_SOX2	ENST00000570125.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr9_-_115818951_115819011	0.18018	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr13_+_24144796_24144809	0.179669	SOX3_SOX2	ENST00000403372.2|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr5_-_134734901_134734931	0.179628	SOX3_SOX2	ENST00000312469.4|H2AFY|ENSG00000113648.12|H2A histone family, member Y 	ENST00000423969.2|H2AFY|ENSG00000113648.12|H2A histone family, member Y
hg19_v2_chr17_-_27038063_27038117	0.179428	SOX3_SOX2	ENST00000439862.3|PROCA1|ENSG00000167525.9|protein interacting with cyclin A1
hg19_v2_chr19_-_23578220_23578362	0.178993	SOX3_SOX2	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr3_-_172312460_172312516	0.178668	SOX3_SOX2	ENST00000418839.2|RP11-408H1.3|ENSG00000223387.2|RP11-408H1.3
hg19_v2_chr10_-_101825151_101825200	0.17855	SOX3_SOX2	ENST00000441382.1|CPN1|ENSG00000120054.7|carboxypeptidase N, polypeptide 1
hg19_v2_chr2_-_38978492_38978636	0.177982	SOX3_SOX2	ENST00000409276.1|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000446327.2|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000313117.6|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7
hg19_v2_chr1_+_12538594_12538614	0.177893	SOX3_SOX2	ENST00000543710.1|VPS13D|ENSG00000048707.9|vacuolar protein sorting 13 homolog D (S. cerevisiae)
hg19_v2_chr17_-_56406117_56406165	0.177832	SOX3_SOX2	ENST00000268893.6|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1 	ENST00000355701.3|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1
hg19_v2_chr7_+_2671568_2671606	0.177301	SOX3_SOX2	ENST00000258796.7|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr13_+_103451399_103451539	0.177167	SOX3_SOX2	ENST00000257336.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing 	ENST00000448849.2|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr19_+_57640011_57640011	0.176971	SOX3_SOX2	ENST00000598197.1|USP29|ENSG00000131864.6|ubiquitin specific peptidase 29
hg19_v2_chr19_+_15052301_15052301	0.176955	SOX3_SOX2	ENST00000248072.3|OR7C2|ENSG00000127529.7|olfactory receptor, family 7, subfamily C, member 2
hg19_v2_chrX_-_73512411_73512444	0.17693	SOX3_SOX2	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr6_-_165989936_165989936	0.176888	SOX3_SOX2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr3_-_149688655_149688737	0.176556	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr1_-_234667504_234667525	0.176083	SOX3_SOX2	ENST00000421207.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1	ENST00000435574.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1
hg19_v2_chr1_-_3447967_3448012	0.175945	SOX3_SOX2	ENST00000294599.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr17_+_4613918_4614000	0.175702	SOX3_SOX2	ENST00000574954.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000346341.2|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000572457.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000381488.6|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000412477.3|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000571428.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000575877.1|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr2_+_74648848_74648894	0.17567	SOX3_SOX2	ENST00000409791.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000426787.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000348227.4|WDR54|ENSG00000005448.12|WD repeat domain 54
hg19_v2_chr3_-_120170052_120170100	0.17553	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr7_+_69064566_69064597	0.175504	SOX3_SOX2	ENST00000403018.2|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr1_-_154150651_154150691	0.175426	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr1_-_53018654_53018777	0.173915	SOX3_SOX2	ENST00000257177.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000355809.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000528642.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000470626.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000371544.3|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr20_+_44563267_44563354	0.1731	SOX3_SOX2	ENST00000372409.3|PCIF1|ENSG00000100982.7|PDX1 C-terminal inhibiting factor 1
hg19_v2_chr19_-_20150252_20150298	0.17301	SOX3_SOX2	ENST00000595736.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000593468.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000596019.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr17_+_2240916_2240989	0.171692	SOX3_SOX2	ENST00000574563.1|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr4_+_15480828_15480868	0.171476	SOX3_SOX2	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr10_-_123687943_123687997	0.171281	SOX3_SOX2	ENST00000540606.1|ATE1|ENSG00000107669.13|arginyltransferase 1 	ENST00000455628.1|ATE1|ENSG00000107669.13|arginyltransferase 1
hg19_v2_chr1_+_104198377_104198377	0.171276	SOX3_SOX2	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr21_+_43442100_43442192	0.171178	SOX3_SOX2	ENST00000455701.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1 	ENST00000596595.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1
hg19_v2_chr20_+_30697298_30697330	0.170943	SOX3_SOX2	ENST00000398022.2|TM9SF4|ENSG00000101337.11|transmembrane 9 superfamily protein member 4
hg19_v2_chr16_+_15068955_15068991	0.170883	SOX3_SOX2	ENST00000396410.4|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000569715.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000450288.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr12_-_122296755_122296770	0.170272	SOX3_SOX2	ENST00000289004.4|HPD|ENSG00000158104.7|4-hydroxyphenylpyruvate dioxygenase
hg19_v2_chr20_-_36889127_36889174	0.170088	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr2_-_166060552_166060566	0.169914	SOX3_SOX2	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr20_+_10415931_10416011	0.169765	SOX3_SOX2	ENST00000334534.5|SLX4IP|ENSG00000149346.10|SLX4 interacting protein
hg19_v2_chr12_+_49761224_49761259	0.169165	SOX3_SOX2	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr19_+_10222189_10222214	0.167839	SOX3_SOX2	ENST00000321826.4|P2RY11|ENSG00000244165.1|purinergic receptor P2Y, G-protein coupled, 11
hg19_v2_chrY_-_15591485_15591551	0.16752	SOX3_SOX2	ENST00000382896.4|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000537580.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000540140.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000545955.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000538878.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
hg19_v2_chr6_-_42016385_42016706	0.167425	SOX3_SOX2	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr18_+_56530794_56530845	0.167231	SOX3_SOX2	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr17_-_39183452_39183468	0.166094	SOX3_SOX2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr1_-_153066998_153067008	0.165212	SOX3_SOX2	ENST00000368750.3|SPRR2E|ENSG00000203785.4|small proline-rich protein 2E
hg19_v2_chr1_-_202858227_202858283	0.163933	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chrX_+_47342970_47342970	0.163878	SOX3_SOX2	ENST00000357412.1|CXorf24|ENSG00000196741.3|chromosome X open reading frame 24
hg19_v2_chr15_-_40331115_40331251	0.16341	SOX3_SOX2	ENST00000558720.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr2_-_74781061_74781088	0.162665	SOX3_SOX2	ENST00000264094.3|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000393937.2|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000409986.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr1_+_93544821_93544868	0.162654	SOX3_SOX2	ENST00000370303.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr12_-_89413456_89413484	0.162576	SOX3_SOX2	ENST00000500381.2|RP11-13A1.1|ENSG00000246363.2|RP11-13A1.1
hg19_v2_chr7_+_5938351_5938379	0.161489	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr2_-_166060571_166060582	0.16109	SOX3_SOX2	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr17_+_55334364_55334412	0.161008	SOX3_SOX2	ENST00000322684.3|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2 	ENST00000579590.1|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chrX_-_19817869_19817922	0.160846	SOX3_SOX2	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr11_+_64059464_64059482	0.160836	SOX3_SOX2	ENST00000394525.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr11_-_18548426_18548500	0.160664	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr19_+_58514229_58514289	0.160437	SOX3_SOX2	ENST00000546949.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000553254.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000547364.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein
hg19_v2_chr6_-_127664736_127664773	0.159373	SOX3_SOX2	ENST00000368291.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000309620.9|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454859.3|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr7_+_77167376_77167395	0.159166	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr3_+_46616017_46616045	0.159129	SOX3_SOX2	ENST00000542931.1|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr3_-_124839648_124839709	0.158732	SOX3_SOX2	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr3_+_49977490_49977522	0.158712	SOX3_SOX2	ENST00000539992.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr12_-_22063787_22063912	0.158522	SOX3_SOX2	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr9_-_125693757_125693818	0.158342	SOX3_SOX2	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr12_-_104531945_104531996	0.15824	SOX3_SOX2	ENST00000551446.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr13_-_31040060_31040102	0.15821	SOX3_SOX2	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr19_+_2269485_2269526	0.15813	SOX3_SOX2	ENST00000582888.4|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1 	ENST00000602676.2|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1 	ENST00000322297.4|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1 	ENST00000583542.4|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1
hg19_v2_chr12_+_69080734_69080808	0.158066	SOX3_SOX2	ENST00000378905.2|NUP107|ENSG00000111581.5|nucleoporin 107kDa
hg19_v2_chr4_-_83483395_83483510	0.157518	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr6_+_135502501_135502652	0.157388	SOX3_SOX2	ENST00000527615.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000420123.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000525369.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000528774.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534121.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534044.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000533624.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr22_+_40342819_40342836	0.157202	SOX3_SOX2	ENST00000407075.3|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2
hg19_v2_chrX_+_103031758_103031779	0.157116	SOX3_SOX2	ENST00000303958.2|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000361621.2|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr10_-_11574274_11574428	0.157087	SOX3_SOX2	ENST00000277575.5|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr19_-_51538148_51538203	0.156689	SOX3_SOX2	ENST00000319590.4|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12 	ENST00000250351.4|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12
hg19_v2_chr2_+_210517895_210518021	0.15633	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr1_-_151119087_151119114	0.156018	SOX3_SOX2	ENST00000341697.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENST00000368914.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
hg19_v2_chr20_-_1165117_1165117	0.156014	SOX3_SOX2	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr1_+_75594119_75594119	0.155662	SOX3_SOX2	ENST00000294638.5|LHX8|ENSG00000162624.10|LIM homeobox 8
hg19_v2_chr19_+_20011775_20011870	0.15563	SOX3_SOX2	ENST00000592245.1|AC007204.2|ENSG00000267268.1|AC007204.2	ENST00000592160.1|ZNF93|ENSG00000184635.9|zinc finger protein 93 	ENST00000343769.5|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chr7_-_142232071_142232090	0.155435	SOX3_SOX2	ENST00000390364.3|TRBV10-1|ENSG00000211717.3|T cell receptor beta variable 10-1(gene/pseudogene)
hg19_v2_chr22_-_32341336_32341336	0.154831	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr17_+_40985407_40985513	0.154756	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr9_-_138799070_138799284	0.154726	SOX3_SOX2	ENST00000389532.4|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1 	ENST00000409386.3|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1
hg19_v2_chrX_-_46404811_46404876	0.153685	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chr15_-_40401062_40401093	0.15327	SOX3_SOX2	ENST00000354670.4|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000559701.1|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000557870.1|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000558774.1|BMF|ENSG00000104081.9|Bcl2 modifying factor
hg19_v2_chr18_+_3451584_3451606	0.153019	SOX3_SOX2	ENST00000551541.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr11_+_63137251_63137280	0.151912	SOX3_SOX2	ENST00000310969.4|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9 	ENST00000279178.3|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9
hg19_v2_chr10_+_35415851_35415941	0.151881	SOX3_SOX2	ENST00000374726.3|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr6_-_27440837_27440912	0.151255	SOX3_SOX2	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr1_-_8877692_8877732	0.150925	SOX3_SOX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr10_+_104263743_104263836	0.149906	SOX3_SOX2	ENST00000369902.3|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000369899.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000423559.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila)
hg19_v2_chr10_-_75410771_75410813	0.148567	SOX3_SOX2	ENST00000372873.4|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr11_-_89224299_89224466	0.14736	SOX3_SOX2	ENST00000343727.5|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000531342.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000375979.3|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr2_+_201676908_201677120	0.146315	SOX3_SOX2	ENST00000409226.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000452790.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr1_-_205419053_205419068	0.14606	SOX3_SOX2	ENST00000367154.1|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chr19_+_17413663_17413679	0.145619	SOX3_SOX2	ENST00000594999.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr10_+_135050908_135050908	0.145364	SOX3_SOX2	ENST00000325980.9|VENTX|ENSG00000151650.7|VENT homeobox
hg19_v2_chr1_+_54411995_54412063	0.145037	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr19_-_821931_821981	0.145003	SOX3_SOX2	ENST00000359894.2|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000520876.3|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000519502.1|LPPR3|ENSG00000129951.14|hsa-mir-3187
hg19_v2_chr4_-_52904425_52904471	0.144837	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr2_-_161349909_161350043	0.144126	SOX3_SOX2	ENST00000392753.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chrX_+_101470280_101470280	0.143949	SOX3_SOX2	ENST00000395088.2|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000330252.5|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000333110.5|TCP11X1|ENSG00000215046.4|t-complex 11 family, X-linked 1
hg19_v2_chr2_+_25264933_25264999	0.143854	SOX3_SOX2	ENST00000401432.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae) 	ENST00000403714.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae)
hg19_v2_chr15_-_49338748_49338765	0.143276	SOX3_SOX2	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr4_+_54966198_54966340	0.143109	SOX3_SOX2	ENST00000326902.2|GSX2|ENSG00000180613.6|GS homeobox 2 	ENST00000503800.1|GSX2|ENSG00000180613.6|GS homeobox 2
hg19_v2_chr8_+_95835438_95835537	0.1421	SOX3_SOX2	ENST00000521860.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519457.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519053.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000523731.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000447247.1|INTS8|ENSG00000164941.9|integrator complex subunit 8
hg19_v2_chr20_+_43211149_43211266	0.142041	SOX3_SOX2	ENST00000372886.1|PKIG|ENSG00000168734.9|protein kinase (cAMP-dependent, catalytic) inhibitor gamma
hg19_v2_chr12_-_9360966_9360996	0.141998	SOX3_SOX2	ENST00000261336.2|PZP|ENSG00000126838.5|pregnancy-zone protein
hg19_v2_chrM_+_4431_4475	0.141715	SOX3_SOX2	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr19_-_20150014_20150085	0.141503	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr1_-_231004220_231004399	0.141362	SOX3_SOX2	ENST00000366663.5|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chrX_-_140673133_140673133	0.141077	SOX3_SOX2	ENST00000370519.3|SPANXA1|ENSG00000198021.5|sperm protein associated with the nucleus, X-linked, family member A1
hg19_v2_chr2_-_200323414_200323468	0.141014	SOX3_SOX2	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr18_-_74207146_74207183	0.14086	SOX3_SOX2	ENST00000443185.2|ZNF516|ENSG00000101493.6|zinc finger protein 516
hg19_v2_chr18_-_29340827_29340845	0.140613	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr12_-_49076002_49076043	0.139908	SOX3_SOX2	ENST00000357861.3|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550347.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000420613.2|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550931.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550870.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr20_+_48884002_48884088	0.139774	SOX3_SOX2	ENST00000425497.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3	ENST00000445003.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3
hg19_v2_chr17_+_4613776_4613792	0.139589	SOX3_SOX2	ENST00000269260.2|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr19_+_16059818_16059818	0.139499	SOX3_SOX2	ENST00000322107.1|OR10H4|ENSG00000176231.1|olfactory receptor, family 10, subfamily H, member 4
hg19_v2_chr17_-_72358001_72358085	0.13937	SOX3_SOX2	ENST00000375366.3|BTBD17|ENSG00000204347.3|BTB (POZ) domain containing 17
hg19_v2_chr6_-_33385655_33385719	0.139322	SOX3_SOX2	ENST00000440279.3|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli) 	ENST00000607266.1|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli)
hg19_v2_chr3_-_49459865_49459876	0.138104	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr7_+_73868220_73868300	0.138066	SOX3_SOX2	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr4_-_175204765_175204843	0.137572	SOX3_SOX2	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr2_-_27579842_27579907	0.137089	SOX3_SOX2	ENST00000423998.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa 	ENST00000264720.3|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr7_-_142247606_142247628	0.136828	SOX3_SOX2	ENST00000390361.3|TRBV7-3|ENSG00000211714.3|T cell receptor beta variable 7-3
hg19_v2_chr5_-_89825328_89825422	0.136722	SOX3_SOX2	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chrX_-_75005054_75005094	0.136705	SOX3_SOX2	ENST00000373359.2|MAGEE2|ENSG00000186675.5|melanoma antigen family E, 2
hg19_v2_chr3_-_48700310_48700348	0.136406	SOX3_SOX2	ENST00000164024.4|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3 	ENST00000544264.1|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3
hg19_v2_chr8_+_110346546_110346619	0.136183	SOX3_SOX2	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr2_+_32288657_32288688	0.135606	SOX3_SOX2	ENST00000345662.1|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr20_-_5485166_5485259	0.134789	SOX3_SOX2	ENST00000589201.1|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654 	ENST00000379053.4|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654
hg19_v2_chr17_+_77751931_77752014	0.13474	SOX3_SOX2	ENST00000310942.4|CBX2|ENSG00000173894.6|chromobox homolog 2 	ENST00000269399.5|CBX2|ENSG00000173894.6|chromobox homolog 2
hg19_v2_chr1_-_205391178_205391214	0.13472	SOX3_SOX2	ENST00000367153.4|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367151.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000391936.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367149.3|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chr10_+_60759378_60759409	0.13427	SOX3_SOX2	ENST00000432535.1|LINC00844|ENSG00000237949.1|long intergenic non-protein coding RNA 844
hg19_v2_chr12_-_122712038_122712081	0.13398	SOX3_SOX2	ENST00000413918.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein 	ENST00000443649.3|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr4_+_150999418_150999433	0.133777	SOX3_SOX2	ENST00000296550.7|DCLK2|ENSG00000170390.10|doublecortin-like kinase 2
hg19_v2_chr12_+_51818749_51818901	0.133442	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr12_+_133707161_133707202	0.133333	SOX3_SOX2	ENST00000538918.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000540609.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000248211.6|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000543271.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000536877.1|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr10_-_104179682_104179717	0.132855	SOX3_SOX2	ENST00000406432.1|PSD|ENSG00000059915.12|pleckstrin and Sec7 domain containing
hg19_v2_chr4_+_106629929_106629982	0.132793	SOX3_SOX2	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr16_+_15068916_15068944	0.13243	SOX3_SOX2	ENST00000455313.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr12_+_22778009_22778112	0.131909	SOX3_SOX2	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chrX_-_101726732_101726732	0.131631	SOX3_SOX2	ENST00000457521.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000412230.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000453326.2|TCP11X2|ENSG00000215029.4|t-complex 11 family, X-linked 2
hg19_v2_chr21_+_17442799_17442853	0.131274	SOX3_SOX2	ENST00000602580.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000458468.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602935.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr19_+_19303720_19303783	0.130827	SOX3_SOX2	ENST00000392324.4|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr13_-_107220455_107220517	0.130616	SOX3_SOX2	ENST00000400198.3|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr2_+_207024306_207024392	0.130522	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr12_-_104359475_104359513	0.130434	SOX3_SOX2	ENST00000553183.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr19_-_19626838_19626991	0.130188	SOX3_SOX2	ENST00000360913.3|TSSK6|ENSG00000178093.12|testis-specific serine kinase 6
hg19_v2_chr12_+_133707204_133707236	0.129962	SOX3_SOX2	ENST00000426665.2|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr3_-_149688896_149688970	0.129699	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr1_-_247267580_247267674	0.129695	SOX3_SOX2	ENST00000366501.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000366500.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000476158.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000448299.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000358785.4|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000343381.6|ZNF669|ENSG00000188295.10|zinc finger protein 669
hg19_v2_chr6_+_30594619_30594665	0.128831	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr6_-_112115074_112115094	0.127693	SOX3_SOX2	ENST00000368667.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr2_+_113816685_113816777	0.127336	SOX3_SOX2	ENST00000393200.2|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr19_-_48673552_48673578	0.127268	SOX3_SOX2	ENST00000536218.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent 	ENST00000596549.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr6_+_130339710_130339745	0.127152	SOX3_SOX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr19_+_19303572_19303651	0.126854	SOX3_SOX2	ENST00000407360.3|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein 	ENST00000540981.1|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr3_-_49459878_49459912	0.126395	SOX3_SOX2	ENST00000546031.1|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000458307.2|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000430521.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr17_-_79829190_79829282	0.126347	SOX3_SOX2	ENST00000581876.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000584461.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000583868.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000400721.4|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000269321.7|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr1_-_151431647_151431669	0.126278	SOX3_SOX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr19_+_55795493_55795534	0.126218	SOX3_SOX2	ENST00000309383.1|BRSK1|ENSG00000160469.12|BR serine/threonine kinase 1
hg19_v2_chr3_-_93781750_93781831	0.125287	SOX3_SOX2	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr9_-_117420052_117420092	0.124329	SOX3_SOX2	ENST00000423632.1|RP11-402G3.5|ENSG00000230054.1|RP11-402G3.5
hg19_v2_chr19_-_20150301_20150321	0.123859	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr5_+_76011868_76012005	0.123403	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr20_+_33292068_33292164	0.12337	SOX3_SOX2	ENST00000374810.3|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000374809.2|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000451665.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chr11_+_120971882_120971882	0.122986	SOX3_SOX2	ENST00000392793.1|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr12_+_16500037_16500076	0.122441	SOX3_SOX2	ENST00000536371.1|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1 	ENST00000010404.2|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1
hg19_v2_chr9_-_74525658_74525658	0.122251	SOX3_SOX2	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr12_-_56123444_56123491	0.122033	SOX3_SOX2	ENST00000546457.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000549117.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr3_-_12200851_12200885	0.121814	SOX3_SOX2	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr7_+_99613212_99613236	0.120661	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr12_-_57634475_57634532	0.120615	SOX3_SOX2	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr1_+_54411715_54411760	0.120533	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr9_-_115774453_115774507	0.120421	SOX3_SOX2	ENST00000427548.1|ZNF883|ENSG00000228623.2|zinc finger protein 883
hg19_v2_chr6_-_26235206_26235224	0.120276	SOX3_SOX2	ENST00000244534.5|HIST1H1D|ENSG00000124575.5|histone cluster 1, H1d
hg19_v2_chr15_+_84116106_84116283	0.120217	SOX3_SOX2	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr14_+_72052983_72053003	0.120196	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr10_+_18429671_18429887	0.119965	SOX3_SOX2	ENST00000282343.8|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr21_-_34144157_34144175	0.119746	SOX3_SOX2	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr10_-_104262460_104262489	0.118844	SOX3_SOX2	ENST00000446605.2|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000369905.4|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000545684.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chr7_+_23146271_23146285	0.118546	SOX3_SOX2	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr1_-_1711508_1711521	0.118443	SOX3_SOX2	ENST00000378625.1|NADK|ENSG00000008130.11|NAD kinase
hg19_v2_chr1_-_167883327_167883352	0.118412	SOX3_SOX2	ENST00000476818.2|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367851.4|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367848.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr11_+_45943169_45943198	0.118017	SOX3_SOX2	ENST00000529052.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B 	ENST00000531526.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B
hg19_v2_chr4_-_87281224_87281375	0.117721	SOX3_SOX2	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr17_-_39677971_39678038	0.11766	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr20_+_55205825_55205938	0.117637	SOX3_SOX2	ENST00000544508.1|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr9_+_96338860_96338939	0.117104	SOX3_SOX2	ENST00000375376.4|PHF2|ENSG00000197724.6|PHD finger protein 2
hg19_v2_chr8_+_62747349_62747515	0.116804	SOX3_SOX2	ENST00000517953.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1	ENST00000520097.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1	ENST00000519766.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1
hg19_v2_chr11_+_34654011_34654118	0.116432	SOX3_SOX2	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr6_+_31865552_31865575	0.116406	SOX3_SOX2	ENST00000469372.1|C2|ENSG00000166278.10|complement component 2 	ENST00000497706.1|C2|ENSG00000166278.10|complement component 2
hg19_v2_chr16_+_1359511_1359804	0.116355	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chr11_-_89224488_89224507	0.115499	SOX3_SOX2	ENST00000534731.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000527626.1|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr4_-_174320687_174320687	0.114801	SOX3_SOX2	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr4_+_4388805_4388855	0.114775	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr3_-_27525826_27525840	0.114762	SOX3_SOX2	ENST00000454389.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000440156.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000437179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000446700.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000455077.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000435667.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000388777.4|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000425128.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr2_+_10442993_10443051	0.114686	SOX3_SOX2	ENST00000423674.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1 	ENST00000307845.3|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr17_+_27717415_27717618	0.114247	SOX3_SOX2	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr2_+_9778872_9778917	0.114213	SOX3_SOX2	ENST00000478468.1|RP11-521D12.1|ENSG00000240687.1|RP11-521D12.1
hg19_v2_chr19_-_51538118_51538134	0.114145	SOX3_SOX2	ENST00000529888.1|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12
hg19_v2_chr2_+_208576259_208576278	0.112962	SOX3_SOX2	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr20_+_60698180_60698208	0.112157	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr7_-_142139783_142139815	0.11138	SOX3_SOX2	ENST00000390374.3|TRBV7-6|ENSG00000211727.3|T cell receptor beta variable 7-6
hg19_v2_chr19_+_21106081_21106207	0.111208	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr5_+_140248518_140248689	0.111047	SOX3_SOX2	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr18_+_46065393_46065444	0.109806	SOX3_SOX2	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr9_+_27109392_27109435	0.109801	SOX3_SOX2	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr2_-_208031943_208031991	0.109784	SOX3_SOX2	ENST00000421199.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous) 	ENST00000457962.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr3_+_49977523_49977540	0.109721	SOX3_SOX2	ENST00000422955.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr19_-_44124019_44124030	0.109336	SOX3_SOX2	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr3_-_52002403_52002433	0.109296	SOX3_SOX2	ENST00000490063.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000468324.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000497653.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000484633.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr15_+_50474385_50474404	0.108589	SOX3_SOX2	ENST00000267842.5|SLC27A2|ENSG00000140284.6|solute carrier family 27 (fatty acid transporter), member 2
hg19_v2_chr8_-_97247759_97247862	0.10849	SOX3_SOX2	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr8_+_67405794_67405862	0.108111	SOX3_SOX2	ENST00000522977.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46 	ENST00000480005.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr5_+_177631523_177631572	0.108063	SOX3_SOX2	ENST00000506339.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000355836.5|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000514633.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000515193.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000506259.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000504898.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B
hg19_v2_chr16_+_75032901_75032974	0.1079	SOX3_SOX2	ENST00000335325.4|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase 	ENST00000320619.6|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr17_+_48503519_48503597	0.107845	SOX3_SOX2	ENST00000300441.4|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000541920.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000506582.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000504392.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000427954.2|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2
hg19_v2_chr11_+_113779704_113779727	0.107714	SOX3_SOX2	ENST00000537778.1|HTR3B|ENSG00000149305.2|5-hydroxytryptamine (serotonin) receptor 3B, ionotropic
hg19_v2_chr6_+_56954808_56954845	0.107703	SOX3_SOX2	ENST00000510483.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370706.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000357489.3|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr17_-_8079632_8079639	0.107694	SOX3_SOX2	ENST00000431792.2|TMEM107|ENSG00000179029.10|transmembrane protein 107
hg19_v2_chr7_+_141463897_141463897	0.107483	SOX3_SOX2	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr10_+_27793197_27793247	0.106388	SOX3_SOX2	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr1_+_227751231_227751273	0.105952	SOX3_SOX2	ENST00000343776.5|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000608949.1|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000397097.3|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chrX_+_150866779_150866779	0.105891	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr3_-_184095923_184095953	0.105826	SOX3_SOX2	ENST00000445696.2|THPO|ENSG00000090534.13|thrombopoietin 	ENST00000204615.7|THPO|ENSG00000090534.13|thrombopoietin
hg19_v2_chr12_-_8815477_8815490	0.105698	SOX3_SOX2	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr1_-_235292250_235292261	0.104663	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr12_+_50144381_50144455	0.104648	SOX3_SOX2	ENST00000552370.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr19_+_1105110_1105259	0.10423	SOX3_SOX2	ENST00000587648.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chr2_-_9143786_9143942	0.103858	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr11_+_13690200_13690244	0.103679	SOX3_SOX2	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr19_-_10047219_10047235	0.103496	SOX3_SOX2	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chrX_-_101718085_101718195	0.102923	SOX3_SOX2	ENST00000372750.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000372752.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B
hg19_v2_chr1_-_182642017_182642049	0.102671	SOX3_SOX2	ENST00000367557.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8 	ENST00000258302.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr7_+_95401877_95401948	0.102553	SOX3_SOX2	ENST00000524053.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000324972.6|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000537881.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000437599.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000359388.4|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000413338.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chrX_-_139866723_139866723	0.100985	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr15_-_35088340_35088340	0.100921	SOX3_SOX2	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chr1_-_202897724_202897764	0.100458	SOX3_SOX2	ENST00000435533.3|KLHL12|ENSG00000117153.11|kelch-like family member 12 	ENST00000367258.1|KLHL12|ENSG00000117153.11|kelch-like family member 12
hg19_v2_chr20_+_55099542_55099542	0.100416	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr2_+_54342533_54342547	0.100193	SOX3_SOX2	ENST00000406041.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr2_+_202098203_202098256	0.10013	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr14_-_89878369_89878496	0.0995404	SOX3_SOX2	ENST00000553840.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000556916.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr6_+_151042224_151042241	0.0995382	SOX3_SOX2	ENST00000358517.2|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
hg19_v2_chr1_-_120439112_120439125	0.0992562	SOX3_SOX2	ENST00000369400.1|ADAM30|ENSG00000134249.6|ADAM metallopeptidase domain 30
hg19_v2_chr1_+_202163015_202163029	0.0992191	SOX3_SOX2	ENST00000367278.3|LGR6|ENSG00000133067.13|leucine-rich repeat containing G protein-coupled receptor 6
hg19_v2_chr8_+_107460147_107460207	0.0988748	SOX3_SOX2	ENST00000442977.2|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr12_+_104359641_104359689	0.0987935	SOX3_SOX2	ENST00000537100.1|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chrX_-_85302531_85302570	0.0982602	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr1_+_93544791_93544807	0.0981414	SOX3_SOX2	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr10_+_94451574_94451612	0.097703	SOX3_SOX2	ENST00000492654.2|HHEX|ENSG00000152804.6|hematopoietically expressed homeobox
hg19_v2_chr21_-_43299404_43299591	0.0974601	SOX3_SOX2	ENST00000422911.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000398548.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000538201.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000269844.3|PRDM15|ENSG00000141956.9|PR domain containing 15
hg19_v2_chr22_+_41865109_41865152	0.0971205	SOX3_SOX2	ENST00000216254.4|ACO2|ENSG00000100412.11|aconitase 2, mitochondrial 	ENST00000396512.3|ACO2|ENSG00000100412.11|aconitase 2, mitochondrial
hg19_v2_chr17_+_54230819_54230871	0.0969798	SOX3_SOX2	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr11_-_107729887_107729927	0.0966823	SOX3_SOX2	ENST00000525815.1|SLC35F2|ENSG00000110660.10|solute carrier family 35, member F2
hg19_v2_chr2_-_153573887_153573930	0.0966193	SOX3_SOX2	ENST00000493468.2|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 	ENST00000545856.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr6_-_160210604_160210641	0.0961873	SOX3_SOX2	ENST00000420894.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000539756.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000544255.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr15_+_64388166_64388225	0.095385	SOX3_SOX2	ENST00000353874.4|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000261889.5|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000559844.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000561026.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000558040.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr1_-_173638976_173639007	0.0948754	SOX3_SOX2	ENST00000333279.2|ANKRD45|ENSG00000183831.6|ankyrin repeat domain 45
hg19_v2_chr17_+_79761997_79762034	0.0945916	SOX3_SOX2	ENST00000400723.3|GCGR|ENSG00000215644.5|glucagon receptor 	ENST00000570996.1|GCGR|ENSG00000215644.5|glucagon receptor
hg19_v2_chr18_-_47013586_47013633	0.0945099	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr13_+_30002846_30002862	0.0944486	SOX3_SOX2	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr7_-_105029812_105029860	0.0936444	SOX3_SOX2	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr19_-_51472823_51472929	0.0936362	SOX3_SOX2	ENST00000310157.2|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr5_+_179921344_179921423	0.0933892	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr12_+_120907622_120907696	0.0932008	SOX3_SOX2	ENST00000392509.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549649.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548342.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr12_-_120907459_120907596	0.0930902	SOX3_SOX2	ENST00000229390.3|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr15_+_32322685_32322701	0.0930825	SOX3_SOX2	ENST00000454250.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal) 	ENST00000306901.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr5_+_55033845_55033870	0.0928085	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr10_+_71389983_71390040	0.0927897	SOX3_SOX2	ENST00000373279.4|C10orf35|ENSG00000171224.7|chromosome 10 open reading frame 35
hg19_v2_chr19_+_52298399_52298445	0.0926239	SOX3_SOX2	ENST00000339223.4|FPR3|ENSG00000187474.4|formyl peptide receptor 3
hg19_v2_chr2_+_160568978_160569064	0.0924622	SOX3_SOX2	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr14_-_102976091_102976133	0.0917112	SOX3_SOX2	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr4_+_164265035_164265091	0.0916597	SOX3_SOX2	ENST00000338566.3|NPY5R|ENSG00000164129.7|neuropeptide Y receptor Y5
hg19_v2_chr14_+_97263641_97263764	0.0915013	SOX3_SOX2	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr1_+_109256067_109256067	0.0914663	SOX3_SOX2	ENST00000271311.2|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr14_+_23845995_23846017	0.0910832	SOX3_SOX2	ENST00000359320.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr1_-_173020056_173020103	0.0902551	SOX3_SOX2	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr2_+_168725458_168725458	0.08998	SOX3_SOX2	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr15_+_74218787_74218813	0.0894617	SOX3_SOX2	ENST00000261921.7|LOXL1|ENSG00000129038.11|lysyl oxidase-like 1
hg19_v2_chr1_-_78149041_78149142	0.0893413	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr8_+_99076509_99076539	0.089182	SOX3_SOX2	ENST00000318528.3|C8orf47|ENSG00000177459.6|chromosome 8 open reading frame 47
hg19_v2_chr14_+_21510385_21510440	0.0888086	SOX3_SOX2	ENST00000298690.4|RNASE7|ENSG00000165799.4|ribonuclease, RNase A family, 7
hg19_v2_chr8_+_104427581_104427677	0.0885923	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr5_-_179072047_179072047	0.0885344	SOX3_SOX2	ENST00000448248.2|C5orf60|ENSG00000204661.5|chromosome 5 open reading frame 60
hg19_v2_chr12_-_118498958_118499021	0.088454	SOX3_SOX2	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr17_-_33760269_33760302	0.0883054	SOX3_SOX2	ENST00000452764.3|SLFN12|ENSG00000172123.8|schlafen family member 12
hg19_v2_chr3_-_11685345_11685432	0.0882482	SOX3_SOX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr7_+_30068260_30068301	0.0882404	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr12_-_54673871_54673925	0.088029	SOX3_SOX2	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr17_-_62308087_62308116	0.088004	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr3_-_52001448_52001478	0.087009	SOX3_SOX2	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr20_+_30063067_30063117	0.0868509	SOX3_SOX2	ENST00000201979.2|REM1|ENSG00000088320.3|RAS (RAD and GEM)-like GTP-binding 1
hg19_v2_chr14_+_20923350_20923424	0.0858456	SOX3_SOX2	ENST00000555414.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000216714.3|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553681.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557344.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000398030.4|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557181.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000555839.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553368.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000556054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557592.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557150.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1
hg19_v2_chr19_-_40324255_40324296	0.0858145	SOX3_SOX2	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr15_+_32322709_32322759	0.0854027	SOX3_SOX2	ENST00000455693.2|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr12_-_8815404_8815438	0.0845218	SOX3_SOX2	ENST00000359478.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000396549.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr2_-_127977654_127977654	0.0845078	SOX3_SOX2	ENST00000409327.1|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr9_+_117904097_117904097	0.0836764	SOX3_SOX2	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr1_+_150039369_150039444	0.0830809	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr1_-_211666259_211666259	0.0830651	SOX3_SOX2	ENST00000367002.4|RD3|ENSG00000198570.5|retinal degeneration 3
hg19_v2_chr2_+_70121075_70121102	0.0827214	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chr20_+_39765581_39765646	0.082556	SOX3_SOX2	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr11_+_111808119_111808151	0.0824841	SOX3_SOX2	ENST00000531396.1|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr3_-_11623804_11623865	0.0822957	SOX3_SOX2	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr1_-_151431909_151431987	0.0814157	SOX3_SOX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr12_-_69080590_69080644	0.0810202	SOX3_SOX2	ENST00000433116.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2	ENST00000500695.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2
hg19_v2_chr4_+_71063641_71063766	0.0805449	SOX3_SOX2	ENST00000514097.1|ODAM|ENSG00000109205.12|odontogenic, ameloblast asssociated
hg19_v2_chr19_-_8373173_8373263	0.080448	SOX3_SOX2	ENST00000537716.2|CD320|ENSG00000167775.6|CD320 molecule 	ENST00000301458.5|CD320|ENSG00000167775.6|CD320 molecule
hg19_v2_chr19_-_55874611_55874633	0.0804135	SOX3_SOX2	ENST00000424985.3|FAM71E2|ENSG00000180043.7|family with sequence similarity 71, member E2
hg19_v2_chrX_+_153626708_153626730	0.0804079	SOX3_SOX2	ENST00000436473.1|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000344746.4|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000458500.1|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr16_-_11375179_11375207	0.0803208	SOX3_SOX2	ENST00000312511.3|PRM1|ENSG00000175646.3|protamine 1
hg19_v2_chr6_-_90062543_90062567	0.0799433	SOX3_SOX2	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr8_-_72274095_72274116	0.0797155	SOX3_SOX2	ENST00000303824.7|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr16_-_20556492_20556492	0.0795271	SOX3_SOX2	ENST00000568098.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr12_+_70760056_70760085	0.0794357	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr11_-_94227029_94227074	0.0793231	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr8_-_41754231_41754281	0.0790277	SOX3_SOX2	ENST00000265709.8|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chrX_-_72097698_72097698	0.0789726	SOX3_SOX2	ENST00000373530.1|DMRTC1|ENSG00000159123.10|DMRT-like family C1
hg19_v2_chr14_-_77923897_77923983	0.0788576	SOX3_SOX2	ENST00000343765.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000327028.4|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000556412.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557466.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000448935.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000553888.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557658.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
hg19_v2_chr7_-_7575477_7575491	0.0782529	SOX3_SOX2	ENST00000399429.3|COL28A1|ENSG00000215018.5|collagen, type XXVIII, alpha 1
hg19_v2_chr19_+_37960240_37960299	0.0778352	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr1_+_214161854_214161892	0.0776592	SOX3_SOX2	ENST00000435016.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr13_-_25745857_25745886	0.0769277	SOX3_SOX2	ENST00000381853.3|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chr10_-_127371675_127371716	0.0762013	SOX3_SOX2	ENST00000532135.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000526819.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000368821.3|TEX36|ENSG00000175018.8|testis expressed 36
hg19_v2_chr1_-_21113105_21113186	0.0756564	SOX3_SOX2	ENST00000375000.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000419490.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000414993.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000443615.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000312239.5|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3
hg19_v2_chr1_-_167883353_167883453	0.0749112	SOX3_SOX2	ENST00000545172.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr9_-_21385396_21385396	0.0744351	SOX3_SOX2	ENST00000380206.2|IFNA2|ENSG00000188379.5|interferon, alpha 2
hg19_v2_chr5_-_9712312_9712490	0.0743673	SOX3_SOX2	ENST00000506620.1|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1 	ENST00000606744.1|CTD-2143L24.1|ENSG00000249781.2|CTD-2143L24.1	ENST00000514078.1|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1
hg19_v2_chr21_+_47268058_47268079	0.0742543	SOX3_SOX2	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr16_-_2837949_2837949	0.0742166	SOX3_SOX2	ENST00000570702.1|PRSS33|ENSG00000103355.8|protease, serine, 33
hg19_v2_chr19_-_52150053_52150151	0.0738428	SOX3_SOX2	ENST00000599649.1|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000360844.6|SIGLEC14|ENSG00000254415.3|sialic acid binding Ig-like lectin 14 	ENST00000429354.3|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000222107.4|SIGLEC5|ENSG00000105501.7|sialic acid binding Ig-like lectin 5
hg19_v2_chr15_+_93443419_93443580	0.0735682	SOX3_SOX2	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr2_-_183387283_183387304	0.0734822	SOX3_SOX2	ENST00000435564.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr19_-_12267524_12267564	0.0733923	SOX3_SOX2	ENST00000455799.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000355738.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000439556.2|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000542938.1|ZNF625|ENSG00000257591.1|zinc finger protein 625
hg19_v2_chrX_+_72062617_72062617	0.0725111	SOX3_SOX2	ENST00000440247.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr13_-_31038370_31038509	0.0721602	SOX3_SOX2	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr12_-_122907091_122907186	0.0720238	SOX3_SOX2	ENST00000358808.2|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000361654.4|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000539080.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000537178.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr21_-_40720995_40721126	0.0715801	SOX3_SOX2	ENST00000380749.5|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr12_-_45270151_45270162	0.0714872	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr3_-_69171739_69171754	0.0714756	SOX3_SOX2	ENST00000489031.1|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr9_+_18474204_18474231	0.0710345	SOX3_SOX2	ENST00000276935.6|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chr4_-_53617798_53617813	0.0706987	SOX3_SOX2	ENST00000443173.1|ERVMER34-1|ENSG00000226887.3|endogenous retrovirus group MER34, member 1
hg19_v2_chr16_+_30662184_30662206	0.0702917	SOX3_SOX2	ENST00000300835.4|PRR14|ENSG00000156858.7|proline rich 14
hg19_v2_chr3_-_121740969_121741106	0.0689852	SOX3_SOX2	ENST00000393631.1|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000273691.3|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000344209.5|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1
hg19_v2_chr17_+_64961026_64961026	0.0686054	SOX3_SOX2	ENST00000262138.3|CACNG4|ENSG00000075461.5|calcium channel, voltage-dependent, gamma subunit 4
hg19_v2_chr14_+_23846210_23846272	0.067733	SOX3_SOX2	ENST00000339180.4|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000342473.4|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000397227.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000555731.1|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr18_+_18943554_18943587	0.0673248	SOX3_SOX2	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr3_-_64009102_64009236	0.0665303	SOX3_SOX2	ENST00000478185.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000482510.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000497323.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000492933.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000295901.4|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr12_-_104350898_104351051	0.0659887	SOX3_SOX2	ENST00000552940.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547975.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000549478.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546540.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546819.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000378090.4|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547945.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr12_-_104532062_104532071	0.0658888	SOX3_SOX2	ENST00000240055.3|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr18_+_32820990_32821031	0.0658278	SOX3_SOX2	ENST00000601719.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000591206.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000330501.7|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000261333.6|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000355632.4|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000585800.1|ZNF397|ENSG00000186812.8|zinc finger protein 397
hg19_v2_chr12_-_10282836_10282863	0.0657933	SOX3_SOX2	ENST00000304084.8|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000353231.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000525605.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr12_+_48722763_48722763	0.0647482	SOX3_SOX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr14_-_23904861_23904927	0.0647232	SOX3_SOX2	ENST00000355349.3|MYH7|ENSG00000092054.12|myosin, heavy chain 7, cardiac muscle, beta
hg19_v2_chr5_+_180326145_180326274	0.0641023	SOX3_SOX2	ENST00000508408.1|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000511704.1|BTNL8|ENSG00000113303.7|butyrophilin-like 8
hg19_v2_chr11_+_126173647_126173647	0.0636371	SOX3_SOX2	ENST00000263579.4|DCPS|ENSG00000110063.4|decapping enzyme, scavenger
hg19_v2_chr13_+_110959598_110959614	0.0634864	SOX3_SOX2	ENST00000360467.5|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chrX_+_72062802_72062802	0.0628709	SOX3_SOX2	ENST00000373533.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr10_-_13544945_13544976	0.0626947	SOX3_SOX2	ENST00000378605.3|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000341083.3|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr3_-_149688502_149688526	0.0620503	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr3_-_169530574_169530774	0.0617451	SOX3_SOX2	ENST00000316515.7|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522830.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522526.2|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr7_-_137028498_137028520	0.0614821	SOX3_SOX2	ENST00000393083.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr1_-_217311090_217311097	0.0614576	SOX3_SOX2	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr11_+_45792967_45793004	0.0612566	SOX3_SOX2	ENST00000378779.2|CTD-2210P24.4|ENSG00000205106.2|Uncharacterized protein
hg19_v2_chr3_-_185655795_185655924	0.0609036	SOX3_SOX2	ENST00000342294.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000382191.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000453386.2|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr2_-_161350305_161350391	0.0606806	SOX3_SOX2	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr7_-_35293740_35293758	0.0606698	SOX3_SOX2	ENST00000408931.3|TBX20|ENSG00000164532.10|T-box 20
hg19_v2_chr5_+_102455968_102456013	0.0602806	SOX3_SOX2	ENST00000358359.3|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr7_+_87563458_87563489	0.0596424	SOX3_SOX2	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr15_-_95870310_95870344	0.0595564	SOX3_SOX2	ENST00000508732.2|CTD-2536I1.1|ENSG00000248441.2|CTD-2536I1.1
hg19_v2_chr7_-_14942944_14942997	0.0595154	SOX3_SOX2	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chrX_+_100645812_100646008	0.0594296	SOX3_SOX2	ENST00000427805.2|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000553110.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000392994.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000409338.1|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough 	ENST00000409170.3|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough
hg19_v2_chr7_-_122840015_122840040	0.0591703	SOX3_SOX2	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr7_+_73868439_73868450	0.058815	SOX3_SOX2	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr12_-_57882498_57882509	0.0587485	SOX3_SOX2	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr18_+_3451646_3451722	0.0586586	SOX3_SOX2	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr20_+_62716348_62716369	0.0585439	SOX3_SOX2	ENST00000349451.3|OPRL1|ENSG00000125510.11|opiate receptor-like 1
hg19_v2_chrX_-_134049262_134049297	0.0584146	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr22_+_25595817_25595840	0.0581377	SOX3_SOX2	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr2_-_207024233_207024327	0.0580429	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr1_-_111174054_111174096	0.0577665	SOX3_SOX2	ENST00000369770.3|KCNA2|ENSG00000177301.9|potassium voltage-gated channel, shaker-related subfamily, member 2
hg19_v2_chr16_+_447209_447225	0.0570339	SOX3_SOX2	ENST00000382940.4|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4 	ENST00000219479.2|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4
hg19_v2_chr2_-_43266680_43266701	0.0569784	SOX3_SOX2	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr7_-_142176790_142176842	0.056586	SOX3_SOX2	ENST00000390369.2|TRBV7-4|ENSG00000253409.1|T cell receptor beta variable 7-4 (gene/pseudogene)
hg19_v2_chr19_+_44100632_44100683	0.0565102	SOX3_SOX2	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chrX_+_101478829_101478939	0.0564914	SOX3_SOX2	ENST00000372763.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000372758.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2
hg19_v2_chr11_+_7273181_7273223	0.0562942	SOX3_SOX2	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr7_+_112262421_112262447	0.0557986	SOX3_SOX2	ENST00000453459.1|AC002463.3|ENSG00000223646.1|AC002463.3
hg19_v2_chr1_+_164529004_164529060	0.0557727	SOX3_SOX2	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr12_-_92539614_92539673	0.0557009	SOX3_SOX2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr8_+_85618155_85618173	0.0555185	SOX3_SOX2	ENST00000523850.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like 	ENST00000521376.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr10_-_97200772_97200919	0.0550816	SOX3_SOX2	ENST00000371241.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000354106.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371239.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000361941.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000277982.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371245.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr21_-_40720974_40720994	0.0547467	SOX3_SOX2	ENST00000380748.1|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr6_+_150070831_150070856	0.0546652	SOX3_SOX2	ENST00000367380.5|PCMT1|ENSG00000120265.12|protein-L-isoaspartate (D-aspartate) O-methyltransferase
hg19_v2_chr19_-_55691614_55691809	0.0546356	SOX3_SOX2	ENST00000592470.1|SYT5|ENSG00000129990.10|synaptotagmin V 	ENST00000354308.3|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr8_-_70016408_70016456	0.0546109	SOX3_SOX2	ENST00000518540.1|RP11-600K15.1|ENSG00000253658.1|RP11-600K15.1
hg19_v2_chr8_-_144241664_144241748	0.054213	SOX3_SOX2	ENST00000342752.4|LY6H|ENSG00000176956.8|lymphocyte antigen 6 complex, locus H
hg19_v2_chr19_-_55690758_55690780	0.0538342	SOX3_SOX2	ENST00000590851.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr19_+_56989485_56989565	0.05324	SOX3_SOX2	ENST00000585445.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000586091.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000594783.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000592146.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000588158.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000299997.4|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000591797.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr22_-_31742218_31742350	0.0526475	SOX3_SOX2	ENST00000266269.5|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1 	ENST00000405309.3|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1 	ENST00000351933.4|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1
hg19_v2_chr5_-_176900610_176900742	0.0523174	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr5_+_56205081_56205092	0.0522771	SOX3_SOX2	ENST00000285947.2|SETD9|ENSG00000155542.7|SET domain containing 9 	ENST00000541720.1|SETD9|ENSG00000155542.7|SET domain containing 9
hg19_v2_chr7_-_107643674_107643700	0.0516757	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr9_+_90497741_90497775	0.051618	SOX3_SOX2	ENST00000325643.5|SPATA31E1|ENSG00000177992.9|SPATA31 subfamily E, member 1
hg19_v2_chr12_-_18243075_18243091	0.0512828	SOX3_SOX2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr11_-_33183048_33183077	0.0512288	SOX3_SOX2	ENST00000438862.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr16_-_52640834_52640847	0.0510998	SOX3_SOX2	ENST00000510238.3|CASC16|ENSG00000249231.3|cancer susceptibility candidate 16 (non-protein coding)
hg19_v2_chr5_+_177631497_177631508	0.0510944	SOX3_SOX2	ENST00000358344.3|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B
hg19_v2_chr12_+_49212514_49212692	0.0510044	SOX3_SOX2	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr19_+_17420340_17420383	0.050752	SOX3_SOX2	ENST00000359866.4|DDA1|ENSG00000130311.6|DET1 and DDB1 associated 1
hg19_v2_chr7_-_50628745_50628778	0.0505593	SOX3_SOX2	ENST00000380984.4|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000357936.5|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000426377.1|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase)
hg19_v2_chr17_+_27573875_27573881	0.0502249	SOX3_SOX2	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chr9_+_70971815_70971841	0.0500503	SOX3_SOX2	ENST00000396392.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5 	ENST00000396396.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5
hg19_v2_chr11_-_117103208_117103288	0.0499468	SOX3_SOX2	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr17_+_16284604_16284661	0.0498173	SOX3_SOX2	ENST00000395839.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000395837.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr1_+_202789394_202789394	0.0497847	SOX3_SOX2	ENST00000330493.5|RP11-480I12.4|ENSG00000184774.6|Putative inactive alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515
hg19_v2_chr1_+_226250379_226250427	0.0496916	SOX3_SOX2	ENST00000366815.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A 	ENST00000366814.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A
hg19_v2_chr13_+_24144509_24144589	0.0494733	SOX3_SOX2	ENST00000248484.4|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr14_+_76776957_76777061	0.0492694	SOX3_SOX2	ENST00000512784.1|ESRRB|ENSG00000119715.10|estrogen-related receptor beta
hg19_v2_chr15_-_44486632_44486664	0.0487418	SOX3_SOX2	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr1_+_201857798_201857836	0.0485189	SOX3_SOX2	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr9_-_120177216_120177341	0.0483884	SOX3_SOX2	ENST00000373996.3|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000313400.4|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000361477.3|ASTN2|ENSG00000148219.12|astrotactin 2
hg19_v2_chr2_+_113816215_113816244	0.0482686	SOX3_SOX2	ENST00000346807.3|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr7_+_116660246_116660336	0.0475244	SOX3_SOX2	ENST00000434836.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393443.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000465133.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000477742.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393447.4|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393444.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr3_+_189507460_189507471	0.0474921	SOX3_SOX2	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr19_+_17416457_17416477	0.0469796	SOX3_SOX2	ENST00000252602.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr17_+_16284399_16284416	0.046906	SOX3_SOX2	ENST00000535788.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr1_+_28696111_28696130	0.0467091	SOX3_SOX2	ENST00000373839.3|PHACTR4|ENSG00000204138.8|phosphatase and actin regulator 4
hg19_v2_chr12_-_24102576_24102637	0.0466537	SOX3_SOX2	ENST00000537393.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000309359.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000381381.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000451604.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr1_+_42928945_42929025	0.0464126	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chr8_+_67405438_67405450	0.0463246	SOX3_SOX2	ENST00000305454.3|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr17_-_62050278_62050278	0.0462568	SOX3_SOX2	ENST00000578147.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit 	ENST00000435607.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit
hg19_v2_chr2_-_107503558_107503580	0.0446194	SOX3_SOX2	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr1_+_223566715_223566791	0.0445097	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr1_+_231297798_231297858	0.0439187	SOX3_SOX2	ENST00000444294.3|TRIM67|ENSG00000119283.11|tripartite motif containing 67
hg19_v2_chr13_+_26828275_26828312	0.0437856	SOX3_SOX2	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr6_+_122720681_122720713	0.0437029	SOX3_SOX2	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr10_+_19777984_19778028	0.0435125	SOX3_SOX2	ENST00000377265.3|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1 	ENST00000455457.2|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1
hg19_v2_chr12_+_94071129_94071175	0.0434129	SOX3_SOX2	ENST00000552983.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000332896.3|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000552033.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000548483.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr12_-_45270077_45270143	0.04322	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr2_-_48132814_48132917	0.0428484	SOX3_SOX2	ENST00000316377.4|FBXO11|ENSG00000138081.15|F-box protein 11 	ENST00000378314.3|FBXO11|ENSG00000138081.15|F-box protein 11
hg19_v2_chr12_+_6982725_6982736	0.0427162	SOX3_SOX2	ENST00000433346.1|LRRC23|ENSG00000010626.10|leucine rich repeat containing 23
hg19_v2_chr17_-_8079648_8079737	0.0425322	SOX3_SOX2	ENST00000449985.2|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000532998.1|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000437139.2|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000533070.1|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000316425.5|TMEM107|ENSG00000179029.10|transmembrane protein 107
hg19_v2_chr10_-_30918669_30918691	0.0419925	SOX3_SOX2	ENST00000375318.2|LYZL2|ENSG00000151033.7|lysozyme-like 2
hg19_v2_chr3_+_112930306_112930338	0.0419506	SOX3_SOX2	ENST00000495514.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr19_+_15852203_15852203	0.0406665	SOX3_SOX2	ENST00000305892.1|OR10H3|ENSG00000171936.1|olfactory receptor, family 10, subfamily H, member 3
hg19_v2_chr7_-_135433460_135433499	0.040607	SOX3_SOX2	ENST00000415751.1|FAM180A|ENSG00000189320.4|family with sequence similarity 180, member A
hg19_v2_chr16_-_11367452_11367491	0.0404476	SOX3_SOX2	ENST00000327157.2|PRM3|ENSG00000178257.2|protamine 3
hg19_v2_chr2_+_32288725_32288776	0.0401785	SOX3_SOX2	ENST00000315285.3|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr12_-_93835665_93835750	0.0400049	SOX3_SOX2	ENST00000552442.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N 	ENST00000550657.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr1_+_167063282_167063325	0.0399248	SOX3_SOX2	ENST00000361200.2|DUSP27|ENSG00000198842.5|dual specificity phosphatase 27 (putative)
hg19_v2_chr17_-_42441204_42441243	0.039762	SOX3_SOX2	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr9_-_116061476_116061476	0.039466	SOX3_SOX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr19_+_58095501_58095628	0.0394091	SOX3_SOX2	ENST00000536878.2|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597850.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597219.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000598689.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000599456.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000307468.4|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1
hg19_v2_chr13_+_31506818_31506853	0.039242	SOX3_SOX2	ENST00000380473.3|TEX26|ENSG00000175664.5|testis expressed 26
hg19_v2_chr19_+_17416609_17416716	0.039224	SOX3_SOX2	ENST00000602206.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr7_-_6388537_6388611	0.039217	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr4_+_699537_699600	0.0391413	SOX3_SOX2	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr22_+_20104947_20105003	0.0391326	SOX3_SOX2	ENST00000402752.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr7_+_26438187_26438351	0.0390509	SOX3_SOX2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr20_-_30795511_30795594	0.0389496	SOX3_SOX2	ENST00000246229.4|PLAGL2|ENSG00000126003.6|pleiomorphic adenoma gene-like 2
hg19_v2_chrX_+_89176881_89176955	0.0387166	SOX3_SOX2	ENST00000283891.5|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked 	ENST00000561129.2|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked
hg19_v2_chr19_+_49468558_49468567	0.0384365	SOX3_SOX2	ENST00000331825.6|FTL|ENSG00000087086.9|ferritin, light polypeptide
hg19_v2_chr10_+_29577974_29578011	0.0384024	SOX3_SOX2	ENST00000375500.3|LYZL1|ENSG00000120563.4|lysozyme-like 1
hg19_v2_chr2_+_46926326_46926452	0.0382489	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr5_-_147211226_147211349	0.0380863	SOX3_SOX2	ENST00000296695.5|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr13_-_31039375_31039379	0.0380232	SOX3_SOX2	ENST00000399494.1|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr12_-_12674032_12674059	0.0378505	SOX3_SOX2	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr6_+_43266063_43266097	0.0377109	SOX3_SOX2	ENST00000372574.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr3_-_10149907_10149944	0.0376493	SOX3_SOX2	ENST00000450660.2|FANCD2OS|ENSG00000163705.8|FANCD2 opposite strand 	ENST00000524279.1|FANCD2OS|ENSG00000163705.8|FANCD2 opposite strand
hg19_v2_chr12_-_81331460_81331505	0.0375856	SOX3_SOX2	ENST00000549417.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr4_+_114214125_114214151	0.03733	SOX3_SOX2	ENST00000509550.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr5_+_72112418_72112456	0.0372134	SOX3_SOX2	ENST00000454282.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr12_-_10282742_10282817	0.0370677	SOX3_SOX2	ENST00000298523.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000396484.2|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000310002.4|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr2_+_183580954_183581049	0.0367611	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr7_-_99774945_99775026	0.0358127	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr3_+_50649302_50649339	0.0353881	SOX3_SOX2	ENST00000446044.1|MAPKAPK3|ENSG00000114738.6|mitogen-activated protein kinase-activated protein kinase 3
hg19_v2_chrX_+_153626571_153626627	0.0352979	SOX3_SOX2	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr19_+_50180409_50180501	0.0352019	SOX3_SOX2	ENST00000391851.4|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chr1_+_174670143_174670160	0.0347222	SOX3_SOX2	ENST00000367687.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like 	ENST00000347255.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr9_+_132388423_132388484	0.0345282	SOX3_SOX2	ENST00000372483.4|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000459968.2|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000482347.1|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000372481.3|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1
hg19_v2_chr12_-_56120865_56120912	0.0342379	SOX3_SOX2	ENST00000548898.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000552067.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr16_-_3930724_3930735	0.0336472	SOX3_SOX2	ENST00000262367.5|CREBBP|ENSG00000005339.8|CREB binding protein
hg19_v2_chr1_+_32666188_32666274	0.0334655	SOX3_SOX2	ENST00000421922.2|CCDC28B|ENSG00000160050.10|coiled-coil domain containing 28B
hg19_v2_chr19_-_45004556_45004581	0.0333624	SOX3_SOX2	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr10_+_102505468_102505546	0.0330797	SOX3_SOX2	ENST00000361791.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000355243.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000428433.1|PAX2|ENSG00000075891.17|paired box 2 	ENST00000370296.2|PAX2|ENSG00000075891.17|paired box 2
hg19_v2_chr8_-_6783588_6783605	0.0329983	SOX3_SOX2	ENST00000297436.2|DEFA6|ENSG00000164822.4|defensin, alpha 6, Paneth cell-specific
hg19_v2_chr21_-_40685536_40685591	0.0325784	SOX3_SOX2	ENST00000341322.4|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr1_-_1243252_1243318	0.0323764	SOX3_SOX2	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr3_+_185304059_185304124	0.031812	SOX3_SOX2	ENST00000427465.2|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr13_+_45694583_45694696	0.0315211	SOX3_SOX2	ENST00000340473.6|GTF2F2|ENSG00000188342.7|general transcription factor IIF, polypeptide 2, 30kDa
hg19_v2_chr10_+_93683519_93683594	0.0313443	SOX3_SOX2	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr22_+_47016277_47016299	0.0309167	SOX3_SOX2	ENST00000406902.1|GRAMD4|ENSG00000075240.12|GRAM domain containing 4
hg19_v2_chr20_-_34252847_34252878	0.0303987	SOX3_SOX2	ENST00000317619.3|CPNE1|ENSG00000214078.7|copine I 	ENST00000397446.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397445.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397443.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000430570.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000439806.2|CPNE1|ENSG00000214078.7|copine I 	ENST00000435161.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437340.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000431148.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr15_+_78730622_78730646	0.0301461	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr21_+_45079409_45079452	0.0298693	SOX3_SOX2	ENST00000340648.4|RRP1B|ENSG00000160208.11|ribosomal RNA processing 1B
hg19_v2_chr18_-_7117813_7117843	0.0291911	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr19_-_51537982_51537997	0.0289903	SOX3_SOX2	ENST00000525263.1|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12
hg19_v2_chr17_+_16284104_16284245	0.0289326	SOX3_SOX2	ENST00000577958.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000302182.3|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000577640.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr12_-_129308487_129308588	0.0289321	SOX3_SOX2	ENST00000266771.5|SLC15A4|ENSG00000139370.6|solute carrier family 15 (oligopeptide transporter), member 4
hg19_v2_chr17_-_7145106_7145172	0.0286768	SOX3_SOX2	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr7_-_8302207_8302242	0.0286298	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr14_+_74815116_74815202	0.0285975	SOX3_SOX2	ENST00000256362.4|VRTN|ENSG00000133980.4|vertebrae development associated
hg19_v2_chr19_+_57791419_57791436	0.0285917	SOX3_SOX2	ENST00000537645.1|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr17_-_43138463_43138505	0.0281925	SOX3_SOX2	ENST00000310604.4|DCAKD|ENSG00000172992.7|dephospho-CoA kinase domain containing
hg19_v2_chr19_-_14785622_14785667	0.028073	SOX3_SOX2	ENST00000443157.2|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr10_+_11207438_11207455	0.0279916	SOX3_SOX2	ENST00000609692.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000354897.3|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr7_+_117120106_117120149	0.0276612	SOX3_SOX2	ENST00000426809.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr14_+_23305760_23305781	0.0271312	SOX3_SOX2	ENST00000311852.6|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr13_-_99404875_99404942	0.0270879	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chr1_-_115300579_115300590	0.0267476	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr19_-_20844368_20844407	0.0267153	SOX3_SOX2	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr7_-_26578407_26578451	0.0265253	SOX3_SOX2	ENST00000242109.3|KIAA0087|ENSG00000122548.3|KIAA0087
hg19_v2_chr9_+_112403059_112403079	0.0261913	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr1_-_37499726_37499850	0.0259769	SOX3_SOX2	ENST00000373091.3|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3 	ENST00000373093.4|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3
hg19_v2_chrX_+_100646190_100646266	0.0256937	SOX3_SOX2	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr1_-_21671968_21672009	0.0255663	SOX3_SOX2	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr7_-_144107320_144107320	0.025022	SOX3_SOX2	ENST00000483238.1|NOBOX|ENSG00000106410.10|NOBOX oogenesis homeobox 	ENST00000467773.1|NOBOX|ENSG00000106410.10|NOBOX oogenesis homeobox
hg19_v2_chr8_-_144242020_144242128	0.0247825	SOX3_SOX2	ENST00000414417.2|LY6H|ENSG00000176956.8|lymphocyte antigen 6 complex, locus H
hg19_v2_chr4_-_74088800_74088844	0.0241355	SOX3_SOX2	ENST00000509867.2|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr12_+_94071341_94071493	0.0233909	SOX3_SOX2	ENST00000542893.2|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr7_-_100061869_100061900	0.0232322	SOX3_SOX2	ENST00000332375.3|C7orf61|ENSG00000185955.4|chromosome 7 open reading frame 61
hg19_v2_chr1_-_65432171_65432252	0.0231678	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr6_-_112194484_112194662	0.0228819	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr17_-_7145475_7145774	0.0225777	SOX3_SOX2	ENST00000571129.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000571253.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000573928.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chrX_-_19689106_19689129	0.0224521	SOX3_SOX2	ENST00000379716.1|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr5_-_98262240_98262240	0.0223099	SOX3_SOX2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr19_-_1568057_1568142	0.0221933	SOX3_SOX2	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr15_+_84115868_84115980	0.0219513	SOX3_SOX2	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr5_-_176037105_176037165	0.0219143	SOX3_SOX2	ENST00000303991.4|GPRIN1|ENSG00000169258.6|G protein regulated inducer of neurite outgrowth 1
hg19_v2_chr6_-_55443831_55443908	0.0215799	SOX3_SOX2	ENST00000428842.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000358072.5|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000508459.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
hg19_v2_chr19_+_57791806_57791875	0.0213914	SOX3_SOX2	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr5_+_102455853_102455961	0.0211456	SOX3_SOX2	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr19_-_14785674_14785685	0.0210525	SOX3_SOX2	ENST00000253673.5|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr9_+_15422702_15422883	0.0207777	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr12_-_57882577_57882614	0.0207262	SOX3_SOX2	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr11_+_114271314_114271365	0.020596	SOX3_SOX2	ENST00000541475.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr16_+_30662360_30662511	0.0202359	SOX3_SOX2	ENST00000542965.2|PRR14|ENSG00000156858.7|proline rich 14
hg19_v2_chr20_+_58571419_58571449	0.0201977	SOX3_SOX2	ENST00000244049.3|CDH26|ENSG00000124215.12|cadherin 26 	ENST00000350849.6|CDH26|ENSG00000124215.12|cadherin 26 	ENST00000456106.1|CDH26|ENSG00000124215.12|cadherin 26
hg19_v2_chr6_-_49834209_49834220	0.0201552	SOX3_SOX2	ENST00000507853.1|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr19_+_9473676_9473712	0.0201054	SOX3_SOX2	ENST00000343499.4|ZNF177|ENSG00000188629.7|zinc finger protein 177 	ENST00000592912.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr3_-_69171708_69171723	0.0193985	SOX3_SOX2	ENST00000420581.2|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr5_+_147774275_147774340	0.0193028	SOX3_SOX2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr14_-_95624227_95624347	0.019099	SOX3_SOX2	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chrX_+_69488174_69488202	0.0183101	SOX3_SOX2	ENST00000480877.2|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin) 	ENST00000307959.8|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr7_+_48211048_48211063	0.0182763	SOX3_SOX2	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr17_-_38210644_38210675	0.0182607	SOX3_SOX2	ENST00000394128.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000394127.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000356271.3|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000535071.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580885.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000543759.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000537674.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580517.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000578161.1|MED24|ENSG00000008838.13|mediator complex subunit 24
hg19_v2_chr19_+_44100727_44100804	0.0179962	SOX3_SOX2	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr16_+_28303804_28303864	0.0174127	SOX3_SOX2	ENST00000341901.4|SBK1|ENSG00000188322.4|SH3 domain binding kinase 1
hg19_v2_chr3_-_64009658_64009687	0.017326	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr12_-_13248732_13248744	0.0172833	SOX3_SOX2	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr7_-_32110451_32110523	0.0171556	SOX3_SOX2	ENST00000396191.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa 	ENST00000396182.2|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr17_-_73150629_73150778	0.0170752	SOX3_SOX2	ENST00000356033.4|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000405458.3|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000409753.3|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr6_+_123100853_123100904	0.0168465	SOX3_SOX2	ENST00000356535.4|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr14_+_75230011_75230120	0.0164175	SOX3_SOX2	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr8_-_101965559_101965570	0.016054	SOX3_SOX2	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr12_-_13248705_13248710	0.0158216	SOX3_SOX2	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr6_+_119215308_119215391	0.0156246	SOX3_SOX2	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr15_-_35047166_35047204	0.015275	SOX3_SOX2	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr17_+_72581057_72581057	0.0152601	SOX3_SOX2	ENST00000392620.1|C17orf77|ENSG00000182352.4|chromosome 17 open reading frame 77
hg19_v2_chr9_+_71819927_71820053	0.0152035	SOX3_SOX2	ENST00000535702.1|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr2_-_242556900_242556916	0.0152	SOX3_SOX2	ENST00000402545.1|THAP4|ENSG00000176946.7|THAP domain containing 4 	ENST00000402136.1|THAP4|ENSG00000176946.7|THAP domain containing 4
hg19_v2_chr3_-_57583052_57583079	0.0145247	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr17_-_73150599_73150616	0.0141632	SOX3_SOX2	ENST00000392566.2|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000581874.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr10_-_104262426_104262437	0.0135264	SOX3_SOX2	ENST00000487599.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chr19_-_14785698_14785810	0.0125565	SOX3_SOX2	ENST00000344373.4|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3 	ENST00000595472.1|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr18_+_3447572_3447607	0.0118898	SOX3_SOX2	ENST00000548489.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr11_-_36310958_36310999	0.0118121	SOX3_SOX2	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr17_-_39041479_39041501	0.0112853	SOX3_SOX2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr12_+_75728419_75728476	0.0109232	SOX3_SOX2	ENST00000378695.4|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1 	ENST00000312442.2|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1
hg19_v2_chr6_-_43478239_43478424	0.0108247	SOX3_SOX2	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr17_-_33446735_33446785	0.0104822	SOX3_SOX2	ENST00000460118.2|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000335858.7|RAD51D|ENSG00000185379.16|RAD51 paralog D
hg19_v2_chr17_-_20946338_20946369	0.0104615	SOX3_SOX2	ENST00000261497.4|USP22|ENSG00000124422.7|ubiquitin specific peptidase 22
hg19_v2_chr2_-_18770812_18770839	0.010033	SOX3_SOX2	ENST00000359846.2|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000532967.1|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000444297.2|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000304081.4|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000600945.1|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB
hg19_v2_chr19_+_55043977_55044008	0.00989874	SOX3_SOX2	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr11_-_35287243_35287292	0.00978763	SOX3_SOX2	ENST00000464522.2|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr2_+_1488435_1488560	0.00939124	SOX3_SOX2	ENST00000446278.1|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000469607.1|TPO|ENSG00000115705.16|thyroid peroxidase
hg19_v2_chr12_-_103889731_103889754	0.00928731	SOX3_SOX2	ENST00000552578.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548048.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000315192.8|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548883.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000378113.2|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42
hg19_v2_chr11_+_63580855_63580889	0.00888354	SOX3_SOX2	ENST00000294244.4|C11orf84|ENSG00000168005.4|chromosome 11 open reading frame 84
hg19_v2_chr3_+_26664291_26664329	0.00868184	SOX3_SOX2	ENST00000396641.2|LRRC3B|ENSG00000179796.7|leucine rich repeat containing 3B
hg19_v2_chr9_-_27297126_27297140	0.00850642	SOX3_SOX2	ENST00000380031.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000537675.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000380032.3|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated
hg19_v2_chr6_+_30689350_30689366	0.00800661	SOX3_SOX2	ENST00000330914.3|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr3_+_73045936_73046128	0.00780215	SOX3_SOX2	ENST00000356692.5|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000488810.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000394284.3|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000295862.9|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000495566.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2
hg19_v2_chr5_+_179921430_179921461	0.00775414	SOX3_SOX2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chrX_-_132352373_132352384	0.00700574	SOX3_SOX2	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr3_-_114790179_114790222	0.00685518	SOX3_SOX2	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr20_-_50479451_50479469	0.0064646	SOX3_SOX2	ENST00000438154.1|RP5-1112F19.2|ENSG00000227964.1|RP5-1112F19.2
hg19_v2_chr6_-_137366096_137366111	0.00639871	SOX3_SOX2	ENST00000316649.5|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha 	ENST00000367746.3|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr12_-_10588539_10588600	0.0062301	SOX3_SOX2	ENST00000381902.2|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000381901.1|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000539033.1|NKG2-E|ENSG00000255641.1|Uncharacterized protein
hg19_v2_chr22_+_20105259_20105476	0.00617362	SOX3_SOX2	ENST00000416427.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000421656.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000423859.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000418705.2|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr15_+_22382382_22382382	0.00604777	SOX3_SOX2	ENST00000328795.4|OR4N4|ENSG00000183706.4|olfactory receptor, family 4, subfamily N, member 4
hg19_v2_chr17_-_17740325_17740349	0.00554024	SOX3_SOX2	ENST00000338854.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr18_+_55888767_55888809	0.00506578	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr17_+_27369918_27370010	0.00486462	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr7_+_23145884_23145917	0.00477103	SOX3_SOX2	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr19_+_4279282_4279293	0.00445265	SOX3_SOX2	ENST00000599689.1|SHD|ENSG00000105251.6|Src homology 2 domain containing transforming protein D
hg19_v2_chr8_-_110620284_110620304	0.00410198	SOX3_SOX2	ENST00000529690.1|SYBU|ENSG00000147642.12|syntabulin (syntaxin-interacting)
hg19_v2_chr3_-_88108192_88108203	0.0038619	SOX3_SOX2	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr2_+_8822113_8822196	0.00380194	SOX3_SOX2	ENST00000396290.1|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 	ENST00000331129.3|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
hg19_v2_chr3_-_112564797_112564797	0.00375499	SOX3_SOX2	ENST00000398214.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like 	ENST00000448932.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like
hg19_v2_chr6_-_49834240_49834253	0.0036509	SOX3_SOX2	ENST00000335847.4|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr22_-_50221160_50221160	0.00327103	SOX3_SOX2	ENST00000404760.1|BRD1|ENSG00000100425.14|bromodomain containing 1
hg19_v2_chr2_+_113735575_113735606	0.00322586	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr12_+_122326662_122326768	0.00318252	SOX3_SOX2	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr5_-_131892501_131892530	0.00250053	SOX3_SOX2	ENST00000450655.1|IL5|ENSG00000113525.5|interleukin 5 (colony-stimulating factor, eosinophil)
hg19_v2_chr19_+_15197791_15197791	0.0023013	SOX3_SOX2	ENST00000209540.2|OR1I1|ENSG00000094661.2|olfactory receptor, family 1, subfamily I, member 1
hg19_v2_chr4_+_154074217_154074270	0.00178636	SOX3_SOX2	ENST00000437508.2|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr9_-_98279241_98279339	0.0017705	SOX3_SOX2	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr13_-_95131923_95131944	0.00138041	SOX3_SOX2	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr7_+_28725585_28725608	0.00096552	SOX3_SOX2	ENST00000396298.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr6_+_146350267_146350419	0.000567587	SOX3_SOX2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr17_+_21730180_21730256	4.83985e-05	SOX3_SOX2	ENST00000584398.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
