hg19_v2_chr13_-_72441315_72441454	2.43253	UGCAUAG	ENST00000305425.4|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila) 	ENST00000313174.7|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila) 	ENST00000354591.4|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila)
hg19_v2_chr1_+_61547894_61547980	1.71829	UGCAUAG	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr7_+_89841000_89841023	1.53908	UGCAUAG	ENST00000287908.3|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr9_-_14314066_14314075	1.41316	UGCAUAG	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr10_-_81205373_81205429	1.39596	UGCAUAG	ENST00000372336.3|ZCCHC24|ENSG00000165424.6|zinc finger, CCHC domain containing 24
hg19_v2_chr18_-_22932080_22932170	1.37298	UGCAUAG	ENST00000584787.1|ZNF521|ENSG00000198795.6|zinc finger protein 521 	ENST00000361524.3|ZNF521|ENSG00000198795.6|zinc finger protein 521 	ENST00000538137.2|ZNF521|ENSG00000198795.6|zinc finger protein 521
hg19_v2_chr4_-_90758227_90758379	1.16656	UGCAUAG	ENST00000506691.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394986.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000506244.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394989.2|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394991.3|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr18_+_72922710_72922733	1.15474	UGCAUAG	ENST00000322038.5|TSHZ1|ENSG00000179981.9|teashirt zinc finger homeobox 1
hg19_v2_chr4_-_149365827_149365870	1.10904	UGCAUAG	ENST00000344721.4|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2
hg19_v2_chr8_-_93115445_93115462	1.08937	UGCAUAG	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr12_+_93965451_93965494	1.08105	UGCAUAG	ENST00000548537.1|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr10_-_125851961_125851970	1.03349	UGCAUAG	ENST00000346248.5|CHST15|ENSG00000182022.13|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
hg19_v2_chr1_+_78470530_78470551	1.03091	UGCAUAG	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr15_-_52970820_52970960	0.969378	UGCAUAG	ENST00000261844.7|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A 	ENST00000399202.4|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A 	ENST00000562135.1|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr9_-_140196703_140196744	0.94957	UGCAUAG	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr4_-_102268628_102268693	0.940808	UGCAUAG	ENST00000323055.6|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000512215.1|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000394854.3|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr12_+_79258547_79258607	0.853755	UGCAUAG	ENST00000457153.2|SYT1|ENSG00000067715.9|synaptotagmin I
hg19_v2_chr8_+_37654424_37654436	0.830903	UGCAUAG	ENST00000315215.7|GPR124|ENSG00000020181.13|G protein-coupled receptor 124
hg19_v2_chr3_-_18466787_18466861	0.826156	UGCAUAG	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr13_-_107187462_107187462	0.818095	UGCAUAG	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr11_+_125034586_125034604	0.710549	UGCAUAG	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr1_+_66999799_66999965	0.696121	UGCAUAG	ENST00000371035.3|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000371036.3|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000371037.4|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr17_+_65821780_65821826	0.67819	UGCAUAG	ENST00000321892.4|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor 	ENST00000335221.5|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor 	ENST00000306378.6|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor
hg19_v2_chr7_-_132261253_132261323	0.666475	UGCAUAG	ENST00000321063.4|PLXNA4|ENSG00000221866.5|plexin A4
hg19_v2_chr6_+_15246501_15246527	0.665492	UGCAUAG	ENST00000341776.2|JARID2|ENSG00000008083.9|jumonji, AT rich interactive domain 2
hg19_v2_chr13_-_110438914_110438937	0.646863	UGCAUAG	ENST00000375856.3|IRS2|ENSG00000185950.7|insulin receptor substrate 2
hg19_v2_chr17_+_79373540_79373540	0.617439	UGCAUAG	ENST00000307745.7|RP11-1055B8.7|ENSG00000171282.9|BAH and coiled-coil domain-containing protein 1
hg19_v2_chr14_-_91526922_91527001	0.615751	UGCAUAG	ENST00000418736.2|RPS6KA5|ENSG00000100784.5|ribosomal protein S6 kinase, 90kDa, polypeptide 5 	ENST00000261991.3|RPS6KA5|ENSG00000100784.5|ribosomal protein S6 kinase, 90kDa, polypeptide 5
hg19_v2_chr12_-_59313270_59313327	0.573157	UGCAUAG	ENST00000379141.4|LRIG3|ENSG00000139263.7|leucine-rich repeats and immunoglobulin-like domains 3
hg19_v2_chr2_-_222436988_222437031	0.559795	UGCAUAG	ENST00000409854.1|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000281821.2|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000392071.4|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000443796.1|EPHA4|ENSG00000116106.7|EPH receptor A4
hg19_v2_chr8_-_81787006_81787031	0.533416	UGCAUAG	ENST00000327835.3|ZNF704|ENSG00000164684.9|zinc finger protein 704
hg19_v2_chr1_+_214161272_214161322	0.532806	UGCAUAG	ENST00000498508.2|PROX1|ENSG00000117707.11|prospero homeobox 1 	ENST00000366958.4|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr14_-_75593708_75593783	0.522658	UGCAUAG	ENST00000557673.1|NEK9|ENSG00000119638.8|NIMA-related kinase 9 	ENST00000238616.5|NEK9|ENSG00000119638.8|NIMA-related kinase 9
hg19_v2_chr1_+_2160134_2160134	0.520703	UGCAUAG	ENST00000378536.4|SKI|ENSG00000157933.9|v-ski avian sarcoma viral oncogene homolog
hg19_v2_chr7_-_35077653_35077653	0.482604	UGCAUAG	ENST00000310974.4|DPY19L1|ENSG00000173852.9|dpy-19-like 1 (C. elegans)
hg19_v2_chr12_+_93771659_93771710	0.479608	UGCAUAG	ENST00000337179.5|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000415493.2|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr5_-_39425068_39425098	0.479412	UGCAUAG	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr8_-_71316021_71316068	0.472921	UGCAUAG	ENST00000452400.2|NCOA2|ENSG00000140396.8|nuclear receptor coactivator 2
hg19_v2_chr3_-_101232019_101232085	0.455211	UGCAUAG	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr14_+_57735614_57735629	0.454528	UGCAUAG	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chr8_+_98881268_98881382	0.451718	UGCAUAG	ENST00000254898.5|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000524308.1|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000522025.2|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr17_+_58677539_58677610	0.439492	UGCAUAG	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr4_+_144257915_144258009	0.427897	UGCAUAG	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr6_-_99395787_99395878	0.419236	UGCAUAG	ENST00000369244.2|FBXL4|ENSG00000112234.4|F-box and leucine-rich repeat protein 4 	ENST00000229971.1|FBXL4|ENSG00000112234.4|F-box and leucine-rich repeat protein 4
hg19_v2_chr6_-_90529418_90529528	0.418696	UGCAUAG	ENST00000439638.1|MDN1|ENSG00000112159.7|MDN1, midasin homolog (yeast) 	ENST00000369393.3|MDN1|ENSG00000112159.7|MDN1, midasin homolog (yeast) 	ENST00000428876.1|MDN1|ENSG00000112159.7|MDN1, midasin homolog (yeast)
hg19_v2_chrX_+_10124977_10125036	0.418485	UGCAUAG	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr4_+_26585538_26585680	0.411834	UGCAUAG	ENST00000264866.4|TBC1D19|ENSG00000109680.6|TBC1 domain family, member 19
hg19_v2_chr22_-_29075853_29075853	0.398809	UGCAUAG	ENST00000397906.2|TTC28|ENSG00000100154.10|tetratricopeptide repeat domain 28
hg19_v2_chr7_+_115850547_115850626	0.389673	UGCAUAG	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr2_+_179059365_179059376	0.388585	UGCAUAG	ENST00000190611.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr15_+_41221536_41221591	0.386748	UGCAUAG	ENST00000249749.5|DLL4|ENSG00000128917.5|delta-like 4 (Drosophila)
hg19_v2_chr16_-_67450325_67450406	0.381833	UGCAUAG	ENST00000348579.2|ZDHHC1|ENSG00000159714.6|zinc finger, DHHC-type containing 1
hg19_v2_chr5_-_148930960_148931013	0.379408	UGCAUAG	ENST00000261798.5|CSNK1A1|ENSG00000113712.12|casein kinase 1, alpha 1 	ENST00000377843.2|CSNK1A1|ENSG00000113712.12|casein kinase 1, alpha 1
hg19_v2_chr20_+_10199468_10199516	0.378744	UGCAUAG	ENST00000254976.2|SNAP25|ENSG00000132639.8|synaptosomal-associated protein, 25kDa 	ENST00000304886.2|SNAP25|ENSG00000132639.8|synaptosomal-associated protein, 25kDa
hg19_v2_chr4_+_174089904_174089921	0.375059	UGCAUAG	ENST00000265000.4|GALNT7|ENSG00000109586.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
hg19_v2_chr21_-_27542972_27543138	0.372081	UGCAUAG	ENST00000346798.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000439274.2|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000354192.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000348990.5|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000357903.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000358918.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000359726.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr11_-_73309228_73309257	0.365136	UGCAUAG	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr13_-_41240717_41240735	0.364239	UGCAUAG	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr11_+_92085262_92085262	0.358703	UGCAUAG	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr18_+_13218769_13218792	0.345377	UGCAUAG	ENST00000399848.3|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4 	ENST00000361205.4|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr16_-_17564738_17564834	0.344263	UGCAUAG	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr14_-_35182994_35183034	0.340652	UGCAUAG	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr11_-_94227029_94227074	0.328731	UGCAUAG	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr11_-_94964354_94964374	0.328157	UGCAUAG	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr5_-_132299313_132299334	0.32731	UGCAUAG	ENST00000265343.5|AFF4|ENSG00000072364.8|AF4/FMR2 family, member 4
hg19_v2_chr2_+_109335929_109336002	0.32688	UGCAUAG	ENST00000283195.6|RANBP2|ENSG00000153201.11|RAN binding protein 2
hg19_v2_chr17_-_49337392_49337465	0.325849	UGCAUAG	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr4_-_42659102_42659161	0.323637	UGCAUAG	ENST00000264449.10|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000510289.1|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000381668.5|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
hg19_v2_chr14_+_85996471_85996497	0.320763	UGCAUAG	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr8_-_66754172_66754201	0.317932	UGCAUAG	ENST00000401827.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr4_+_26862400_26862416	0.315842	UGCAUAG	ENST00000467011.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000412829.2|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chrX_-_18372792_18372847	0.312968	UGCAUAG	ENST00000251900.4|SCML2|ENSG00000102098.13|sex comb on midleg-like 2 (Drosophila)
hg19_v2_chr2_+_235860616_235860645	0.309267	UGCAUAG	ENST00000392011.2|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr14_+_103058948_103059005	0.304823	UGCAUAG	ENST00000262241.6|RCOR1|ENSG00000089902.8|REST corepressor 1
hg19_v2_chr3_-_171178157_171178225	0.304137	UGCAUAG	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr18_-_53255766_53255860	0.296107	UGCAUAG	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr2_+_109204909_109204928	0.294921	UGCAUAG	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr3_+_52444651_52444697	0.291996	UGCAUAG	ENST00000327906.3|PHF7|ENSG00000010318.15|PHD finger protein 7
hg19_v2_chr8_-_91658303_91658327	0.279468	UGCAUAG	ENST00000458549.2|TMEM64|ENSG00000180694.9|transmembrane protein 64
hg19_v2_chr6_-_51952418_51952428	0.278295	UGCAUAG	ENST00000371117.3|PKHD1|ENSG00000170927.10|polycystic kidney and hepatic disease 1 (autosomal recessive)
hg19_v2_chr10_+_180987_181009	0.278291	UGCAUAG	ENST00000381591.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr20_+_1246908_1246999	0.277146	UGCAUAG	ENST00000381873.3|SNPH|ENSG00000101298.9|syntaphilin 	ENST00000381867.1|SNPH|ENSG00000101298.9|syntaphilin
hg19_v2_chr20_+_54933971_54934165	0.272022	UGCAUAG	ENST00000371384.3|FAM210B|ENSG00000124098.9|family with sequence similarity 210, member B 	ENST00000437418.1|FAM210B|ENSG00000124098.9|family with sequence similarity 210, member B
hg19_v2_chr7_-_6312206_6312308	0.271937	UGCAUAG	ENST00000350796.3|CYTH3|ENSG00000008256.11|cytohesin 3
hg19_v2_chr13_+_73632897_73632930	0.270157	UGCAUAG	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr15_-_44486632_44486664	0.269955	UGCAUAG	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr11_+_74459876_74459930	0.269794	UGCAUAG	ENST00000299563.4|RNF169|ENSG00000166439.5|ring finger protein 169
hg19_v2_chr10_+_80828774_80828792	0.266356	UGCAUAG	ENST00000334512.5|ZMIZ1|ENSG00000108175.12|zinc finger, MIZ-type containing 1
hg19_v2_chr16_+_69221028_69221092	0.264282	UGCAUAG	ENST00000336278.4|SNTB2|ENSG00000168807.12|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
hg19_v2_chr9_+_125703282_125703337	0.26189	UGCAUAG	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chrX_+_135067576_135067634	0.261682	UGCAUAG	ENST00000370701.1|SLC9A6|ENSG00000198689.5|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 	ENST00000370698.3|SLC9A6|ENSG00000198689.5|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 	ENST00000370695.4|SLC9A6|ENSG00000198689.5|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6
hg19_v2_chr7_+_8008418_8008443	0.261384	UGCAUAG	ENST00000223145.5|GLCCI1|ENSG00000106415.8|glucocorticoid induced transcript 1
hg19_v2_chrX_-_41782249_41782287	0.259887	UGCAUAG	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr6_-_79787902_79787958	0.250594	UGCAUAG	ENST00000275034.4|PHIP|ENSG00000146247.13|pleckstrin homology domain interacting protein
hg19_v2_chr4_+_170541660_170541677	0.246622	UGCAUAG	ENST00000513761.1|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3 	ENST00000347613.4|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3
hg19_v2_chr15_-_52821247_52821295	0.245893	UGCAUAG	ENST00000399231.3|MYO5A|ENSG00000197535.10|myosin VA (heavy chain 12, myoxin) 	ENST00000399233.2|MYO5A|ENSG00000197535.10|myosin VA (heavy chain 12, myoxin)
hg19_v2_chr10_-_94333784_94333860	0.24479	UGCAUAG	ENST00000265986.6|IDE|ENSG00000119912.11|insulin-degrading enzyme
hg19_v2_chr8_-_92053212_92053292	0.244576	UGCAUAG	ENST00000285419.3|TMEM55A|ENSG00000155099.3|transmembrane protein 55A
hg19_v2_chr19_+_34919257_34919332	0.24217	UGCAUAG	ENST00000246548.4|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2 	ENST00000590048.2|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2
hg19_v2_chr2_-_201828356_201828412	0.239235	UGCAUAG	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr9_-_125693757_125693818	0.232395	UGCAUAG	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr3_-_141868357_141868393	0.232239	UGCAUAG	ENST00000489671.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000475734.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000467072.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000499676.2|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr19_+_36706024_36706049	0.232045	UGCAUAG	ENST00000443387.2|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr4_-_125633876_125633897	0.231887	UGCAUAG	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr12_+_60083118_60083157	0.231573	UGCAUAG	ENST00000261187.4|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000543448.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chrX_-_33146477_33146521	0.225274	UGCAUAG	ENST00000378677.2|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr1_+_155051305_155051367	0.225208	UGCAUAG	ENST00000368408.3|EFNA3|ENSG00000143590.9|ephrin-A3
hg19_v2_chr4_+_144434584_144434709	0.223939	UGCAUAG	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr5_+_140227048_140227048	0.223626	UGCAUAG	ENST00000532602.1|PCDHA9|ENSG00000204961.5|protocadherin alpha 9
hg19_v2_chr2_+_70056762_70056847	0.223319	UGCAUAG	ENST00000282570.3|GMCL1|ENSG00000087338.4|germ cell-less, spermatogenesis associated 1
hg19_v2_chr19_-_2050852_2050895	0.223066	UGCAUAG	ENST00000541165.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000591601.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr4_+_108745711_108745726	0.222423	UGCAUAG	ENST00000394684.4|SGMS2|ENSG00000164023.10|sphingomyelin synthase 2
hg19_v2_chr1_+_203595903_203595934	0.221363	UGCAUAG	ENST00000367218.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000367219.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000391954.2|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4
hg19_v2_chr2_-_166651191_166651213	0.218397	UGCAUAG	ENST00000392701.3|GALNT3|ENSG00000115339.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
hg19_v2_chr22_+_40573921_40573946	0.21776	UGCAUAG	ENST00000454349.2|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B 	ENST00000335727.9|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B
hg19_v2_chr5_+_140220769_140220907	0.216771	UGCAUAG	ENST00000531613.1|PCDHA8|ENSG00000204962.4|protocadherin alpha 8 	ENST00000378123.3|PCDHA8|ENSG00000204962.4|protocadherin alpha 8
hg19_v2_chr9_-_77567743_77567817	0.211477	UGCAUAG	ENST00000376854.5|C9orf40|ENSG00000135045.6|chromosome 9 open reading frame 40
hg19_v2_chr1_+_52682052_52682052	0.211088	UGCAUAG	ENST00000371591.1|ZFYVE9|ENSG00000157077.10|zinc finger, FYVE domain containing 9
hg19_v2_chr5_+_140248518_140248689	0.209935	UGCAUAG	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr4_-_39640700_39640712	0.209634	UGCAUAG	ENST00000295958.5|SMIM14|ENSG00000163683.7|small integral membrane protein 14
hg19_v2_chr1_-_154928562_154928629	0.206248	UGCAUAG	ENST00000368463.3|PBXIP1|ENSG00000163346.12|pre-B-cell leukemia homeobox interacting protein 1 	ENST00000539880.1|PBXIP1|ENSG00000163346.12|pre-B-cell leukemia homeobox interacting protein 1 	ENST00000542459.1|PBXIP1|ENSG00000163346.12|pre-B-cell leukemia homeobox interacting protein 1 	ENST00000368460.3|PBXIP1|ENSG00000163346.12|pre-B-cell leukemia homeobox interacting protein 1 	ENST00000368465.1|PBXIP1|ENSG00000163346.12|pre-B-cell leukemia homeobox interacting protein 1
hg19_v2_chr5_+_140213815_140213969	0.202669	UGCAUAG	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr4_-_17783135_17783250	0.20136	UGCAUAG	ENST00000265018.3|FAM184B|ENSG00000047662.4|family with sequence similarity 184, member B
hg19_v2_chr14_+_53196872_53196959	0.201147	UGCAUAG	ENST00000442123.2|STYX|ENSG00000198252.7|serine/threonine/tyrosine interacting protein 	ENST00000354586.4|STYX|ENSG00000198252.7|serine/threonine/tyrosine interacting protein
hg19_v2_chr3_-_133969437_133969670	0.191726	UGCAUAG	ENST00000460933.1|RYK|ENSG00000163785.8|receptor-like tyrosine kinase 	ENST00000296084.4|RYK|ENSG00000163785.8|receptor-like tyrosine kinase
hg19_v2_chr5_+_140734570_140734768	0.190607	UGCAUAG	ENST00000571252.1|PCDHGA4|ENSG00000262576.1|protocadherin gamma subfamily A, 4
hg19_v2_chr3_+_191046810_191046874	0.190085	UGCAUAG	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr2_-_178128528_178128574	0.189523	UGCAUAG	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr8_-_124553437_124553453	0.189408	UGCAUAG	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr10_+_89622870_89622870	0.18775	UGCAUAG	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr5_+_140800638_140800795	0.179256	UGCAUAG	ENST00000398587.2|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11 	ENST00000518882.1|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11
hg19_v2_chr3_+_179065474_179065530	0.178914	UGCAUAG	ENST00000471841.1|MFN1|ENSG00000171109.14|mitofusin 1 	ENST00000280653.7|MFN1|ENSG00000171109.14|mitofusin 1
hg19_v2_chr5_+_140254884_140255058	0.176727	UGCAUAG	ENST00000398631.2|PCDHA12|ENSG00000251664.2|protocadherin alpha 12
hg19_v2_chr13_+_108870714_108870780	0.176169	UGCAUAG	ENST00000375898.3|ABHD13|ENSG00000139826.5|abhydrolase domain containing 13
hg19_v2_chr12_+_57998595_57998621	0.173564	UGCAUAG	ENST00000337737.3|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000548198.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000551632.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila)
hg19_v2_chr16_+_8768422_8768453	0.173178	UGCAUAG	ENST00000268251.8|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase 	ENST00000564714.1|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase
hg19_v2_chr7_-_71801980_71802013	0.171947	UGCAUAG	ENST00000329008.5|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr6_+_24667257_24667365	0.171695	UGCAUAG	ENST00000537591.1|ACOT13|ENSG00000112304.6|acyl-CoA thioesterase 13 	ENST00000230048.4|ACOT13|ENSG00000112304.6|acyl-CoA thioesterase 13
hg19_v2_chr10_-_75634260_75634321	0.169802	UGCAUAG	ENST00000372765.1|CAMK2G|ENSG00000148660.16|calcium/calmodulin-dependent protein kinase II gamma 	ENST00000351293.3|CAMK2G|ENSG00000148660.16|calcium/calmodulin-dependent protein kinase II gamma
hg19_v2_chr8_+_28351707_28351781	0.167209	UGCAUAG	ENST00000537916.1|FZD3|ENSG00000104290.6|frizzled family receptor 3 	ENST00000523546.1|FZD3|ENSG00000104290.6|frizzled family receptor 3 	ENST00000240093.3|FZD3|ENSG00000104290.6|frizzled family receptor 3
hg19_v2_chr3_+_107241783_107241850	0.166586	UGCAUAG	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr1_+_179851410_179851447	0.16019	UGCAUAG	ENST00000271583.3|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1 	ENST00000606911.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr1_-_6259641_6259690	0.158513	UGCAUAG	ENST00000234875.4|RPL22|ENSG00000116251.5|ribosomal protein L22
hg19_v2_chr17_-_61920280_61920425	0.158026	UGCAUAG	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chr5_+_56111361_56111403	0.156921	UGCAUAG	ENST00000399503.3|MAP3K1|ENSG00000095015.5|mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase
hg19_v2_chr17_-_30669138_30669208	0.15622	UGCAUAG	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr2_-_180129484_180129574	0.154644	UGCAUAG	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr5_+_134181625_134181713	0.153432	UGCAUAG	ENST00000394976.3|C5orf24|ENSG00000181904.8|chromosome 5 open reading frame 24
hg19_v2_chr5_+_86564739_86564791	0.15289	UGCAUAG	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr2_+_46926048_46926095	0.152032	UGCAUAG	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr18_-_44497308_44497499	0.151829	UGCAUAG	ENST00000585916.1|PIAS2|ENSG00000078043.11|protein inhibitor of activated STAT, 2 	ENST00000324794.7|PIAS2|ENSG00000078043.11|protein inhibitor of activated STAT, 2 	ENST00000545673.1|PIAS2|ENSG00000078043.11|protein inhibitor of activated STAT, 2
hg19_v2_chr21_-_34144157_34144175	0.149665	UGCAUAG	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr14_-_39901618_39901704	0.148104	UGCAUAG	ENST00000554932.1|FBXO33|ENSG00000165355.7|F-box protein 33 	ENST00000298097.7|FBXO33|ENSG00000165355.7|F-box protein 33
hg19_v2_chr16_+_68119440_68119561	0.148034	UGCAUAG	ENST00000346183.3|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 	ENST00000329524.4|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
hg19_v2_chr8_-_95961578_95961639	0.147957	UGCAUAG	ENST00000448464.2|TP53INP1|ENSG00000164938.9|tumor protein p53 inducible nuclear protein 1 	ENST00000342697.4|TP53INP1|ENSG00000164938.9|tumor protein p53 inducible nuclear protein 1
hg19_v2_chr5_-_137090028_137090075	0.146623	UGCAUAG	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr17_-_43568062_43568110	0.145605	UGCAUAG	ENST00000421073.2|PLEKHM1|ENSG00000225190.4|pleckstrin homology domain containing, family M (with RUN domain) member 1 	ENST00000584420.1|PLEKHM1|ENSG00000225190.4|pleckstrin homology domain containing, family M (with RUN domain) member 1 	ENST00000589780.1|PLEKHM1|ENSG00000225190.4|pleckstrin homology domain containing, family M (with RUN domain) member 1 	ENST00000430334.3|PLEKHM1|ENSG00000225190.4|pleckstrin homology domain containing, family M (with RUN domain) member 1
hg19_v2_chr5_-_77590480_77590579	0.14097	UGCAUAG	ENST00000519295.1|AP3B1|ENSG00000132842.9|adaptor-related protein complex 3, beta 1 subunit 	ENST00000255194.6|AP3B1|ENSG00000132842.9|adaptor-related protein complex 3, beta 1 subunit
hg19_v2_chr15_-_73925651_73925773	0.140802	UGCAUAG	ENST00000545878.1|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000287226.8|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000345330.4|NPTN|ENSG00000156642.12|neuroplastin
hg19_v2_chr13_-_22033392_22033510	0.139285	UGCAUAG	ENST00000320220.9|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000415724.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000422251.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000382466.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000542645.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000400590.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20
hg19_v2_chr12_+_72056773_72056796	0.138484	UGCAUAG	ENST00000308086.2|THAP2|ENSG00000173451.2|THAP domain containing, apoptosis associated protein 2
hg19_v2_chr14_+_36295504_36295580	0.138109	UGCAUAG	ENST00000216807.7|BRMS1L|ENSG00000100916.9|breast cancer metastasis-suppressor 1-like
hg19_v2_chr3_+_28283069_28283168	0.136532	UGCAUAG	ENST00000466830.1|CMC1|ENSG00000187118.8|C-x(9)-C motif containing 1 	ENST00000423894.1|CMC1|ENSG00000187118.8|C-x(9)-C motif containing 1
hg19_v2_chr3_-_123304017_123304040	0.136466	UGCAUAG	ENST00000383657.5|PTPLB|ENSG00000206527.5|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
hg19_v2_chr20_-_5591626_5591677	0.135225	UGCAUAG	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr3_+_183873098_183873230	0.134155	UGCAUAG	ENST00000313143.3|DVL3|ENSG00000161202.13|dishevelled segment polarity protein 3
hg19_v2_chrX_+_44732757_44732860	0.131446	UGCAUAG	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr3_-_114790179_114790222	0.130634	UGCAUAG	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr17_-_65241281_65241326	0.129998	UGCAUAG	ENST00000358691.5|HELZ|ENSG00000198265.7|helicase with zinc finger 	ENST00000580168.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr12_+_5019061_5019078	0.12959	UGCAUAG	ENST00000382545.3|KCNA1|ENSG00000111262.4|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)
hg19_v2_chr9_-_98279241_98279339	0.127435	UGCAUAG	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr1_-_45672221_45672260	0.126101	UGCAUAG	ENST00000359600.5|ZSWIM5|ENSG00000162415.6|zinc finger, SWIM-type containing 5
hg19_v2_chr5_+_140165876_140165876	0.124214	UGCAUAG	ENST00000504120.2|PCDHA1|ENSG00000204970.5|protocadherin alpha 1 	ENST00000394633.3|PCDHA1|ENSG00000204970.5|protocadherin alpha 1 	ENST00000378133.3|PCDHA1|ENSG00000204970.5|protocadherin alpha 1
hg19_v2_chr11_-_113746277_113746300	0.123762	UGCAUAG	ENST00000003302.4|USP28|ENSG00000048028.7|ubiquitin specific peptidase 28 	ENST00000545540.1|USP28|ENSG00000048028.7|ubiquitin specific peptidase 28
hg19_v2_chr8_-_57906362_57906452	0.122044	UGCAUAG	ENST00000262644.4|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chr11_+_129939779_129939801	0.121918	UGCAUAG	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr2_-_129076151_129076151	0.119984	UGCAUAG	ENST00000259241.6|HS6ST1|ENSG00000136720.6|heparan sulfate 6-O-sulfotransferase 1
hg19_v2_chr7_-_112430647_112430776	0.119609	UGCAUAG	ENST00000312814.6|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr1_-_154943212_154943230	0.118935	UGCAUAG	ENST00000368445.5|SHC1|ENSG00000160691.14|SHC (Src homology 2 domain containing) transforming protein 1 	ENST00000448116.2|SHC1|ENSG00000160691.14|SHC (Src homology 2 domain containing) transforming protein 1 	ENST00000368449.4|SHC1|ENSG00000160691.14|SHC (Src homology 2 domain containing) transforming protein 1
hg19_v2_chr6_+_158957431_158957468	0.117767	UGCAUAG	ENST00000367090.3|TMEM181|ENSG00000146433.8|transmembrane protein 181
hg19_v2_chr5_-_39074479_39074515	0.117704	UGCAUAG	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr19_-_46105411_46105481	0.116462	UGCAUAG	ENST00000323040.4|GPR4|ENSG00000177464.4|G protein-coupled receptor 4 	ENST00000544371.1|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr16_-_3930724_3930735	0.115686	UGCAUAG	ENST00000262367.5|CREBBP|ENSG00000005339.8|CREB binding protein
hg19_v2_chr4_+_87856129_87856186	0.114922	UGCAUAG	ENST00000395146.4|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1 	ENST00000507468.1|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1
hg19_v2_chr12_-_54673871_54673925	0.103493	UGCAUAG	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr9_+_108006880_108006943	0.102897	UGCAUAG	ENST00000374723.1|SLC44A1|ENSG00000070214.11|solute carrier family 44 (choline transporter), member 1 	ENST00000374720.3|SLC44A1|ENSG00000070214.11|solute carrier family 44 (choline transporter), member 1 	ENST00000374724.1|SLC44A1|ENSG00000070214.11|solute carrier family 44 (choline transporter), member 1
hg19_v2_chr18_+_60190226_60190314	0.102437	UGCAUAG	ENST00000269499.5|ZCCHC2|ENSG00000141664.5|zinc finger, CCHC domain containing 2
hg19_v2_chr12_+_109915179_109915220	0.101374	UGCAUAG	ENST00000434735.2|UBE3B|ENSG00000151148.9|ubiquitin protein ligase E3B
hg19_v2_chr8_+_37553261_37553282	0.100918	UGCAUAG	ENST00000331569.4|ZNF703|ENSG00000183779.5|zinc finger protein 703
hg19_v2_chr10_+_25463951_25463991	0.100483	UGCAUAG	ENST00000376351.3|GPR158|ENSG00000151025.9|G protein-coupled receptor 158
hg19_v2_chr3_+_128997648_128997733	0.0994288	UGCAUAG	ENST00000509042.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000383463.4|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000417226.2|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000510314.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific
hg19_v2_chr15_+_38544476_38544574	0.0993952	UGCAUAG	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr15_-_52861394_52861436	0.0988384	UGCAUAG	ENST00000563277.1|ARPP19|ENSG00000128989.6|cAMP-regulated phosphoprotein, 19kDa 	ENST00000566423.1|ARPP19|ENSG00000128989.6|cAMP-regulated phosphoprotein, 19kDa
hg19_v2_chr10_-_15210666_15210707	0.0983246	UGCAUAG	ENST00000378165.4|NMT2|ENSG00000152465.13|N-myristoyltransferase 2
hg19_v2_chr2_-_64371546_64371588	0.097418	UGCAUAG	ENST00000358912.4|PELI1|ENSG00000197329.7|pellino E3 ubiquitin protein ligase 1
hg19_v2_chr4_-_13629269_13629372	0.0973788	UGCAUAG	ENST00000040738.5|BOD1L1|ENSG00000038219.8|biorientation of chromosomes in cell division 1-like 1
hg19_v2_chr8_+_17013515_17013540	0.0957822	UGCAUAG	ENST00000262096.8|ZDHHC2|ENSG00000104219.8|zinc finger, DHHC-type containing 2
hg19_v2_chr4_+_38665810_38665827	0.0951831	UGCAUAG	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr5_+_140207536_140207650	0.0947361	UGCAUAG	ENST00000529310.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6 	ENST00000527624.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6
hg19_v2_chr4_+_129730779_129730826	0.0942879	UGCAUAG	ENST00000226319.6|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chr1_-_150552006_150552093	0.0941854	UGCAUAG	ENST00000307940.3|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related) 	ENST00000369026.2|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related)
hg19_v2_chr5_+_96271141_96271168	0.0937731	UGCAUAG	ENST00000231368.5|LNPEP|ENSG00000113441.11|leucyl/cystinyl aminopeptidase
hg19_v2_chr1_+_228270361_228270437	0.0928942	UGCAUAG	ENST00000272102.5|ARF1|ENSG00000143761.9|ADP-ribosylation factor 1 	ENST00000540651.1|ARF1|ENSG00000143761.9|ADP-ribosylation factor 1
hg19_v2_chr5_+_140753444_140753651	0.0926272	UGCAUAG	ENST00000517434.1|PCDHGA6|ENSG00000253731.1|protocadherin gamma subfamily A, 6
hg19_v2_chr5_+_179125907_179126038	0.0916269	UGCAUAG	ENST00000247461.4|CANX|ENSG00000127022.10|calnexin 	ENST00000452673.2|CANX|ENSG00000127022.10|calnexin 	ENST00000502498.1|CANX|ENSG00000127022.10|calnexin 	ENST00000507307.1|CANX|ENSG00000127022.10|calnexin 	ENST00000513246.1|CANX|ENSG00000127022.10|calnexin 	ENST00000502673.1|CANX|ENSG00000127022.10|calnexin 	ENST00000506654.1|CANX|ENSG00000127022.10|calnexin 	ENST00000512607.2|CANX|ENSG00000127022.10|calnexin 	ENST00000510810.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr15_-_51914996_51915035	0.0908521	UGCAUAG	ENST00000251076.5|DMXL2|ENSG00000104093.9|Dmx-like 2
hg19_v2_chr3_-_143567262_143567373	0.0904035	UGCAUAG	ENST00000474151.1|SLC9A9|ENSG00000181804.10|solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 	ENST00000316549.6|SLC9A9|ENSG00000181804.10|solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9
hg19_v2_chr5_+_112043186_112043225	0.0896756	UGCAUAG	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr1_+_244816237_244816357	0.0895019	UGCAUAG	ENST00000302550.11|DESI2|ENSG00000121644.14|desumoylating isopeptidase 2
hg19_v2_chr15_-_30114622_30114706	0.0890974	UGCAUAG	ENST00000495972.2|TJP1|ENSG00000104067.12|tight junction protein 1 	ENST00000346128.6|TJP1|ENSG00000104067.12|tight junction protein 1
hg19_v2_chr13_-_111567353_111567432	0.0879751	UGCAUAG	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chr5_+_140739537_140739703	0.0872309	UGCAUAG	ENST00000522605.1|PCDHGB2|ENSG00000253910.1|protocadherin gamma subfamily B, 2
hg19_v2_chr1_+_93544791_93544807	0.0863765	UGCAUAG	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr5_+_140743859_140743898	0.0859681	UGCAUAG	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr2_-_172017343_172017391	0.085387	UGCAUAG	ENST00000431350.2|TLK1|ENSG00000198586.9|tousled-like kinase 1 	ENST00000360843.3|TLK1|ENSG00000198586.9|tousled-like kinase 1
hg19_v2_chr2_-_70475730_70475798	0.0828915	UGCAUAG	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr5_-_157002775_157002790	0.0827267	UGCAUAG	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr1_-_150849208_150849244	0.0821257	UGCAUAG	ENST00000358595.5|ARNT|ENSG00000143437.16|aryl hydrocarbon receptor nuclear translocator
hg19_v2_chr1_-_57889687_57889754	0.0782177	UGCAUAG	ENST00000371236.2|DAB1|ENSG00000173406.11|Dab, reelin signal transducer, homolog 1 (Drosophila) 	ENST00000371230.1|DAB1|ENSG00000173406.11|Dab, reelin signal transducer, homolog 1 (Drosophila)
hg19_v2_chrX_+_12993202_12993239	0.0780958	UGCAUAG	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr1_-_214724566_214724566	0.0748089	UGCAUAG	ENST00000366956.5|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr10_+_97803151_97803348	0.0744822	UGCAUAG	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr5_+_140306478_140306478	0.0742495	UGCAUAG	ENST00000253807.2|PCDHAC1|ENSG00000248383.3|protocadherin alpha subfamily C, 1
hg19_v2_chr1_-_205601064_205601090	0.0731009	UGCAUAG	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr5_+_172483347_172483407	0.0716192	UGCAUAG	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr5_+_140792614_140792743	0.0703372	UGCAUAG	ENST00000398610.2|PCDHGA10|ENSG00000253846.1|protocadherin gamma subfamily A, 10
hg19_v2_chr8_+_81397876_81397902	0.0690218	UGCAUAG	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr8_+_107670064_107670132	0.068535	UGCAUAG	ENST00000312046.6|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr6_-_139695757_139695795	0.0664649	UGCAUAG	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr1_-_236445251_236445319	0.0660301	UGCAUAG	ENST00000354619.5|ERO1LB|ENSG00000086619.9|ERO1-like beta (S. cerevisiae) 	ENST00000327333.8|ERO1LB|ENSG00000086619.9|ERO1-like beta (S. cerevisiae)
hg19_v2_chr12_+_111843749_111843763	0.0659986	UGCAUAG	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr15_+_31619013_31619095	0.0652295	UGCAUAG	ENST00000307145.3|KLF13|ENSG00000169926.5|Kruppel-like factor 13
hg19_v2_chr5_+_140186647_140186773	0.064028	UGCAUAG	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr20_-_50159198_50159299	0.0638617	UGCAUAG	ENST00000371564.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000396009.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000610033.1|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
hg19_v2_chr10_-_124768300_124768334	0.0636301	UGCAUAG	ENST00000368886.5|IKZF5|ENSG00000095574.7|IKAROS family zinc finger 5 (Pegasus)
hg19_v2_chr5_-_150948414_150948505	0.0624895	UGCAUAG	ENST00000261800.5|FAT2|ENSG00000086570.8|FAT atypical cadherin 2
hg19_v2_chr9_-_34637718_34637791	0.0621188	UGCAUAG	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chr6_+_170102210_170102275	0.0621062	UGCAUAG	ENST00000439249.1|C6orf120|ENSG00000185127.5|chromosome 6 open reading frame 120 	ENST00000332290.2|C6orf120|ENSG00000185127.5|chromosome 6 open reading frame 120
hg19_v2_chr14_-_74253948_74253964	0.0615986	UGCAUAG	ENST00000394071.2|ELMSAN1|ENSG00000156030.8|ELM2 and Myb/SANT-like domain containing 1
hg19_v2_chr2_+_39893043_39893118	0.061594	UGCAUAG	ENST00000281961.2|TMEM178A|ENSG00000152154.6|transmembrane protein 178A
hg19_v2_chr3_-_52931557_52931623	0.061014	UGCAUAG	ENST00000504329.1|TMEM110-MUSTN1|ENSG00000248592.3|TMEM110-MUSTN1 readthrough 	ENST00000355083.5|TMEM110|ENSG00000213533.7|transmembrane protein 110
hg19_v2_chr4_+_89513574_89513670	0.0597244	UGCAUAG	ENST00000402738.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3 	ENST00000431413.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3 	ENST00000422770.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3 	ENST00000407637.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3
hg19_v2_chrX_-_153718953_153718975	0.0577958	UGCAUAG	ENST00000369649.4|SLC10A3|ENSG00000126903.11|solute carrier family 10, member 3 	ENST00000393586.1|SLC10A3|ENSG00000126903.11|solute carrier family 10, member 3
hg19_v2_chr4_-_76439596_76439643	0.0572197	UGCAUAG	ENST00000451788.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 	ENST00000512706.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr2_+_54683419_54683442	0.0571496	UGCAUAG	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr21_-_38362497_38362541	0.0568897	UGCAUAG	ENST00000427746.1|HLCS|ENSG00000159267.10|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 	ENST00000336648.4|HLCS|ENSG00000159267.10|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)
hg19_v2_chr1_-_51425902_51425976	0.0565423	UGCAUAG	ENST00000396153.2|FAF1|ENSG00000185104.15|Fas (TNFRSF6) associated factor 1
hg19_v2_chr3_+_58318594_58318694	0.0551383	UGCAUAG	ENST00000356151.2|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000302779.5|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000383716.3|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000463280.1|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000383715.4|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000484288.1|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000479241.1|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase 	ENST00000536660.1|PXK|ENSG00000168297.11|PX domain containing serine/threonine kinase
hg19_v2_chr5_+_140723601_140723601	0.0548347	UGCAUAG	ENST00000253812.6|PCDHGA3|ENSG00000254245.1|protocadherin gamma subfamily A, 3
hg19_v2_chr20_-_48099182_48099214	0.0545817	UGCAUAG	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr1_+_201617450_201617465	0.0542117	UGCAUAG	ENST00000295624.6|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367297.4|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367300.3|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr4_+_2845547_2845654	0.0527541	UGCAUAG	ENST00000264758.7|ADD1|ENSG00000087274.12|adducin 1 (alpha) 	ENST00000446856.1|ADD1|ENSG00000087274.12|adducin 1 (alpha) 	ENST00000398125.1|ADD1|ENSG00000087274.12|adducin 1 (alpha)
hg19_v2_chr1_+_24829384_24829443	0.0524654	UGCAUAG	ENST00000374395.4|RCAN3|ENSG00000117602.7|RCAN family member 3 	ENST00000436717.2|RCAN3|ENSG00000117602.7|RCAN family member 3
hg19_v2_chr7_+_69064300_69064342	0.0516509	UGCAUAG	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr7_+_2671568_2671606	0.0484334	UGCAUAG	ENST00000258796.7|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr19_+_49122548_49122777	0.0479665	UGCAUAG	ENST00000245222.4|SPHK2|ENSG00000063176.11|sphingosine kinase 2 	ENST00000340932.3|SPHK2|ENSG00000063176.11|sphingosine kinase 2 	ENST00000601712.1|SPHK2|ENSG00000063176.11|sphingosine kinase 2 	ENST00000600537.1|SPHK2|ENSG00000063176.11|sphingosine kinase 2
hg19_v2_chr10_-_32636106_32636150	0.0454697	UGCAUAG	ENST00000263062.8|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila) 	ENST00000319778.6|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr7_-_138666053_138666146	0.0448697	UGCAUAG	ENST00000440172.1|KIAA1549|ENSG00000122778.5|KIAA1549 	ENST00000422774.1|KIAA1549|ENSG00000122778.5|KIAA1549
hg19_v2_chr5_+_140797296_140797427	0.0445303	UGCAUAG	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr12_+_51985001_51985037	0.0441804	UGCAUAG	ENST00000354534.6|SCN8A|ENSG00000196876.9|sodium channel, voltage gated, type VIII, alpha subunit
hg19_v2_chr20_-_60640866_60640901	0.0433751	UGCAUAG	ENST00000252996.4|TAF4|ENSG00000130699.12|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
hg19_v2_chr8_+_37620097_37620146	0.0422499	UGCAUAG	ENST00000328195.3|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial) 	ENST00000523358.1|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial) 	ENST00000523187.1|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial)
hg19_v2_chr17_+_55333876_55333939	0.0404854	UGCAUAG	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr17_+_16593539_16593639	0.0397032	UGCAUAG	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr15_-_43398274_43398318	0.0393882	UGCAUAG	ENST00000382177.2|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1 	ENST00000290650.4|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1
hg19_v2_chr5_+_140772381_140772381	0.0382468	UGCAUAG	ENST00000398604.2|PCDHGA8|ENSG00000253767.1|protocadherin gamma subfamily A, 8
hg19_v2_chr18_+_48086440_48086512	0.038132	UGCAUAG	ENST00000400384.2|MAPK4|ENSG00000141639.7|mitogen-activated protein kinase 4 	ENST00000540640.1|MAPK4|ENSG00000141639.7|mitogen-activated protein kinase 4 	ENST00000592595.1|MAPK4|ENSG00000141639.7|mitogen-activated protein kinase 4
hg19_v2_chr1_+_155036204_155036238	0.0369675	UGCAUAG	ENST00000368409.3|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000359751.4|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000556931.1|EFNA3|ENSG00000143590.9|ephrin-A3 	ENST00000505139.1|EFNA3|ENSG00000251246.1|Ephrin-A3; Uncharacterized protein; cDNA FLJ57652, highly similar to Ephrin-A3  	ENST00000427683.2|EFNA4|ENSG00000243364.3|ephrin-A4
hg19_v2_chr12_+_110719032_110719113	0.0355602	UGCAUAG	ENST00000395494.2|ATP2A2|ENSG00000174437.12|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
hg19_v2_chr6_-_24721054_24721074	0.035507	UGCAUAG	ENST00000378119.4|C6orf62|ENSG00000112308.8|chromosome 6 open reading frame 62
hg19_v2_chr1_+_27022485_27022543	0.0350496	UGCAUAG	ENST00000324856.7|ARID1A|ENSG00000117713.13|AT rich interactive domain 1A (SWI-like)
hg19_v2_chr15_-_78423886_78423907	0.0349739	UGCAUAG	ENST00000258930.3|CIB2|ENSG00000136425.8|calcium and integrin binding family member 2
hg19_v2_chr14_+_51706886_51707006	0.0340688	UGCAUAG	ENST00000457354.2|TMX1|ENSG00000139921.8|thioredoxin-related transmembrane protein 1
hg19_v2_chr17_+_48423453_48423505	0.0334541	UGCAUAG	ENST00000017003.2|XYLT2|ENSG00000015532.5|xylosyltransferase II 	ENST00000509778.1|XYLT2|ENSG00000015532.5|xylosyltransferase II 	ENST00000507602.1|XYLT2|ENSG00000015532.5|xylosyltransferase II
hg19_v2_chr2_-_202316260_202316308	0.0323877	UGCAUAG	ENST00000332624.3|TRAK2|ENSG00000115993.7|trafficking protein, kinesin binding 2
hg19_v2_chr19_-_2308127_2308159	0.0306911	UGCAUAG	ENST00000404279.1|LINGO3|ENSG00000220008.2|leucine rich repeat and Ig domain containing 3
hg19_v2_chr11_+_118401706_118401803	0.0305554	UGCAUAG	ENST00000411589.2|TMEM25|ENSG00000149582.11|transmembrane protein 25 	ENST00000442938.2|TMEM25|ENSG00000149582.11|transmembrane protein 25 	ENST00000359862.4|TMEM25|ENSG00000149582.11|transmembrane protein 25
hg19_v2_chrX_-_48824793_48824793	0.0294677	UGCAUAG	ENST00000376477.1|KCND1|ENSG00000102057.5|potassium voltage-gated channel, Shal-related subfamily, member 1
hg19_v2_chr9_-_73736511_73736546	0.0293881	UGCAUAG	ENST00000377110.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377111.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr5_+_140749803_140749831	0.0287167	UGCAUAG	ENST00000576222.1|PCDHGB3|ENSG00000262209.1|protocadherin gamma subfamily B, 3
hg19_v2_chr12_+_74931551_74931656	0.0285759	UGCAUAG	ENST00000519948.2|ATXN7L3B|ENSG00000253719.2|ataxin 7-like 3B
hg19_v2_chr5_+_140762268_140762467	0.0284009	UGCAUAG	ENST00000518325.1|PCDHGA7|ENSG00000253537.1|protocadherin gamma subfamily A, 7
hg19_v2_chr2_-_172750733_172750762	0.0263381	UGCAUAG	ENST00000392592.4|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12 	ENST00000422440.2|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12
hg19_v2_chr1_+_89149905_89149995	0.0261435	UGCAUAG	ENST00000316005.7|PKN2|ENSG00000065243.14|protein kinase N2 	ENST00000370521.3|PKN2|ENSG00000065243.14|protein kinase N2 	ENST00000370505.3|PKN2|ENSG00000065243.14|protein kinase N2
hg19_v2_chr17_+_57697216_57697235	0.0257315	UGCAUAG	ENST00000393043.1|CLTC|ENSG00000141367.7|clathrin, heavy chain (Hc) 	ENST00000269122.3|CLTC|ENSG00000141367.7|clathrin, heavy chain (Hc)
hg19_v2_chr12_+_67663056_67663067	0.0256549	UGCAUAG	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr11_+_33278811_33279133	0.0243609	UGCAUAG	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr5_+_140201183_140201361	0.0243145	UGCAUAG	ENST00000529619.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000529859.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000378126.3|PCDHA5|ENSG00000204965.4|protocadherin alpha 5
hg19_v2_chr10_-_119806085_119806114	0.0231429	UGCAUAG	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr14_+_71374122_71374193	0.0226931	UGCAUAG	ENST00000304743.2|PCNX|ENSG00000100731.11|pecanex homolog (Drosophila) 	ENST00000238570.5|PCNX|ENSG00000100731.11|pecanex homolog (Drosophila)
hg19_v2_chr4_-_96470350_96470373	0.0214936	UGCAUAG	ENST00000504962.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000453304.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000506749.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr22_-_39096661_39096681	0.0212662	UGCAUAG	ENST00000216039.5|JOSD1|ENSG00000100221.6|Josephin domain containing 1
hg19_v2_chr3_+_88039846_88039846	0.0195472	UGCAUAG	ENST00000319595.4|HTR1F|ENSG00000179097.4|5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled
hg19_v2_chr1_-_70671216_70671303	0.0194771	UGCAUAG	ENST00000370952.3|LRRC40|ENSG00000066557.5|leucine rich repeat containing 40
hg19_v2_chr9_+_108210279_108210435	0.0193489	UGCAUAG	ENST00000374716.4|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000374710.3|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000481272.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000484973.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000394926.3|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000539376.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like
hg19_v2_chr2_+_139259324_139259389	0.0188327	UGCAUAG	ENST00000280098.4|SPOPL|ENSG00000144228.4|speckle-type POZ protein-like
hg19_v2_chr10_+_75757863_75757897	0.0183677	UGCAUAG	ENST00000372755.3|VCL|ENSG00000035403.12|vinculin 	ENST00000211998.4|VCL|ENSG00000035403.12|vinculin 	ENST00000417648.2|VCL|ENSG00000035403.12|vinculin
hg19_v2_chr12_+_52345448_52345532	0.0182282	UGCAUAG	ENST00000257963.4|ACVR1B|ENSG00000135503.8|activin A receptor, type IB 	ENST00000541224.1|ACVR1B|ENSG00000135503.8|activin A receptor, type IB 	ENST00000426655.2|ACVR1B|ENSG00000135503.8|activin A receptor, type IB 	ENST00000536420.1|ACVR1B|ENSG00000135503.8|activin A receptor, type IB 	ENST00000415850.2|ACVR1B|ENSG00000135503.8|activin A receptor, type IB
hg19_v2_chr7_+_136553370_136553421	0.0177349	UGCAUAG	ENST00000445907.2|CHRM2|ENSG00000181072.7|cholinergic receptor, muscarinic 2
hg19_v2_chr5_+_140787600_140787770	0.0174674	UGCAUAG	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr1_-_229478236_229478308	0.0146935	UGCAUAG	ENST00000366687.1|CCSAP|ENSG00000154429.6|centriole, cilia and spindle-associated protein 	ENST00000452552.1|CCSAP|ENSG00000154429.6|centriole, cilia and spindle-associated protein
hg19_v2_chr6_+_135502466_135502489	0.0145984	UGCAUAG	ENST00000367814.4|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr2_+_85766280_85766299	0.0136505	UGCAUAG	ENST00000306434.3|MAT2A|ENSG00000168906.8|methionine adenosyltransferase II, alpha
hg19_v2_chr10_-_114206649_114206688	0.0133532	UGCAUAG	ENST00000369404.3|ZDHHC6|ENSG00000023041.7|zinc finger, DHHC-type containing 6 	ENST00000369405.3|ZDHHC6|ENSG00000023041.7|zinc finger, DHHC-type containing 6
hg19_v2_chr17_-_56084578_56084707	0.0129901	UGCAUAG	ENST00000582730.2|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1 	ENST00000584773.1|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1 	ENST00000585096.1|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1 	ENST00000258962.4|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1
hg19_v2_chr8_+_67579807_67579887	0.0122227	UGCAUAG	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr2_-_175499294_175499339	0.0118732	UGCAUAG	ENST00000392547.2|WIPF1|ENSG00000115935.12|WAS/WASL interacting protein family, member 1
hg19_v2_chr5_-_56247935_56247959	0.0110448	UGCAUAG	ENST00000381199.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381226.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381213.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3
hg19_v2_chr12_+_57916466_57916527	0.0109986	UGCAUAG	ENST00000355673.3|MBD6|ENSG00000166987.10|methyl-CpG binding domain protein 6
hg19_v2_chr1_+_43148059_43148111	0.0109786	UGCAUAG	ENST00000321358.7|YBX1|ENSG00000065978.13|Y box binding protein 1 	ENST00000332220.6|YBX1|ENSG00000065978.13|Y box binding protein 1
hg19_v2_chr5_+_140855495_140855580	0.0106317	UGCAUAG	ENST00000308177.3|PCDHGC3|ENSG00000240184.2|protocadherin gamma subfamily C, 3
hg19_v2_chr18_-_57027194_57027194	0.0102668	UGCAUAG	ENST00000251047.5|LMAN1|ENSG00000074695.5|lectin, mannose-binding, 1
hg19_v2_chr3_-_125094093_125094198	0.0100301	UGCAUAG	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr9_+_91150016_91150100	0.00794063	UGCAUAG	ENST00000375854.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2 	ENST00000375855.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2
hg19_v2_chr13_-_79979919_79979945	0.00776779	UGCAUAG	ENST00000267229.7|RBM26|ENSG00000139746.11|RNA binding motif protein 26
hg19_v2_chr9_-_72374848_72374894	0.00766005	UGCAUAG	ENST00000377200.5|PTAR1|ENSG00000188647.8|protein prenyltransferase alpha subunit repeat containing 1 	ENST00000340434.4|PTAR1|ENSG00000188647.8|protein prenyltransferase alpha subunit repeat containing 1 	ENST00000472967.2|PTAR1|ENSG00000188647.8|protein prenyltransferase alpha subunit repeat containing 1
hg19_v2_chr1_-_109584608_109584712	0.00746682	UGCAUAG	ENST00000400794.3|WDR47|ENSG00000085433.11|WD repeat domain 47 	ENST00000528747.1|WDR47|ENSG00000085433.11|WD repeat domain 47 	ENST00000369962.3|WDR47|ENSG00000085433.11|WD repeat domain 47 	ENST00000361054.3|WDR47|ENSG00000085433.11|WD repeat domain 47
hg19_v2_chr1_+_33546714_33546769	0.00706567	UGCAUAG	ENST00000294517.6|ADC|ENSG00000142920.12|arginine decarboxylase 	ENST00000358680.3|ADC|ENSG00000142920.12|arginine decarboxylase 	ENST00000373443.3|ADC|ENSG00000142920.12|arginine decarboxylase 	ENST00000398167.1|ADC|ENSG00000142920.12|arginine decarboxylase
hg19_v2_chr5_+_140180635_140180783	0.00662763	UGCAUAG	ENST00000522353.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3 	ENST00000532566.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3
hg19_v2_chr7_+_5085452_5085553	0.0065407	UGCAUAG	ENST00000353796.3|RBAK|ENSG00000146587.13|RB-associated KRAB zinc finger 	ENST00000396904.2|RBAK-RBAKDN|ENSG00000272968.1|RBAK-RBAKDN readthrough 	ENST00000396912.1|RBAK|ENSG00000146587.13|RB-associated KRAB zinc finger
hg19_v2_chr12_+_62860581_62860629	0.00529075	UGCAUAG	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr9_+_6413317_6413418	0.00450349	UGCAUAG	ENST00000276893.5|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 	ENST00000381373.3|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
hg19_v2_chr8_+_24772455_24772535	0.00441294	UGCAUAG	ENST00000433454.2|NEFM|ENSG00000104722.9|neurofilament, medium polypeptide
hg19_v2_chr17_+_57970469_57970600	0.00404339	UGCAUAG	ENST00000443572.2|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1 	ENST00000406116.3|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1 	ENST00000225577.4|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1 	ENST00000393021.3|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1
hg19_v2_chr5_+_140718396_140718539	0.00359113	UGCAUAG	ENST00000394576.2|PCDHGA2|ENSG00000081853.13|protocadherin gamma subfamily A, 2
hg19_v2_chr1_+_171810606_171810649	0.00222043	UGCAUAG	ENST00000358155.4|DNM3|ENSG00000197959.9|dynamin 3 	ENST00000367733.2|DNM3|ENSG00000197959.9|dynamin 3 	ENST00000355305.5|DNM3|ENSG00000197959.9|dynamin 3 	ENST00000367731.1|DNM3|ENSG00000197959.9|dynamin 3
hg19_v2_chr5_+_119799927_119800064	0.00155334	UGCAUAG	ENST00000407149.2|PRR16|ENSG00000184838.10|proline rich 16 	ENST00000379551.2|PRR16|ENSG00000184838.10|proline rich 16
hg19_v2_chr11_+_121322832_121322912	0.00140058	UGCAUAG	ENST00000260197.7|SORL1|ENSG00000137642.8|sortilin-related receptor, L(DLR class) A repeats containing
hg19_v2_chr5_+_140261703_140261854	0.000670901	UGCAUAG	ENST00000409494.1|PCDHA13|ENSG00000239389.3|protocadherin alpha 13 	ENST00000289272.2|PCDHA13|ENSG00000239389.3|protocadherin alpha 13
hg19_v2_chr21_-_43430440_43430496	0.000310542	UGCAUAG	ENST00000398505.3|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000310826.5|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000449949.1|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398499.1|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398497.2|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398511.3|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21
hg19_v2_chr12_+_107168342_107168393	2.48747e-06	UGCAUAG	ENST00000392837.4|RIC8B|ENSG00000111785.14|RIC8 guanine nucleotide exchange factor B
