hg19_v1_chr17_+_68071386_68071475	1.01665	MSX1,2.p2	BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v1_chr5_-_160279045_160279218	0.91953	MSX1,2.p2	AB018258|ATP10B|23120|ATPase, class V, type 10B	AK295081|ATP10B|23120|ATPase, class V, type 10B	AK090832|ATP10B|23120|ATPase, class V, type 10B	NM_025153|ATP10B|23120|ATPase, class V, type 10B
hg19_v1_chr3_-_165555252_165555283	0.725412	MSX1,2.p2	NM_000055|BCHE|590|butyrylcholinesterase
hg19_v1_chr3_-_165555167_165555220	0.668187	MSX1,2.p2	M16474|BCHE|590|butyrylcholinesterase	BC018141|BCHE|590|butyrylcholinesterase	BC008396|BCHE|590|butyrylcholinesterase	AK292063|BCHE|590|butyrylcholinesterase	M16541|BCHE|590|butyrylcholinesterase
hg19_v1_chr6_+_16129285_16129320	0.596384	MSX1,2.p2	AK074391|MYLIP|29116|myosin regulatory light chain interacting protein	AK314648|MYLIP|29116|myosin regulatory light chain interacting protein	NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein
hg19_v1_chr12_-_71551564_71551619	0.414668	MSX1,2.p2	AK223022|TSPAN8|7103|tetraspanin 8	AK313112|TSPAN8|7103|tetraspanin 8
hg19_v1_chr3_-_151102536_151102553	0.404688	MSX1,2.p2	AK292096|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	AK303714|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	AK316575|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	BC017898|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	NM_022788|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12
hg19_v1_chr8_-_27115935_27115980	0.37895	MSX1,2.p2	AK297415|STMN4|81551|stathmin-like 4
hg19_v1_chr16_-_21289571_21289616	0.375737	MSX1,2.p2	DQ892377|CRYM|1428|crystallin, mu	DQ895591|CRYM|1428|crystallin, mu	AK310424|CRYM|1428|crystallin, mu	U85772|CRYM|1428|crystallin, mu	L02950|CRYM|1428|crystallin, mu	BC008398|CRYM|1428|crystallin, mu
hg19_v1_chr12_+_53818864_53818869	0.374626	MSX1,2.p2	CR627318|AMHR2|269|anti-Mullerian hormone receptor, type II
hg19_v1_chr8_-_27115897_27115927	0.368124	MSX1,2.p2	BC011520|STMN4|81551|stathmin-like 4	NM_030795|STMN4|81551|stathmin-like 4	BC111001|STMN4|81551|stathmin-like 4	AK295329|STMN4|81551|stathmin-like 4	AK225142|STMN4|81551|stathmin-like 4	AK294023|STMN4|81551|stathmin-like 4	AK309207|STMN4|81551|stathmin-like 4	AL136568|STMN4|81551|stathmin-like 4
hg19_v1_chr10_+_115511212_115511212	0.36563	MSX1,2.p2	AK128811|C10orf81|79949|chromosome 10 open reading frame 81	NM_001193434|C10orf81|79949|chromosome 10 open reading frame 81	NM_001193435|C10orf81|79949|chromosome 10 open reading frame 81	NM_024889|C10orf81|79949|chromosome 10 open reading frame 81
hg19_v1_chr3_-_148939784_148939831	0.329003	MSX1,2.p2	BC070304|CP|1356|ceruloplasmin (ferroxidase)	NM_000096|CP|1356|ceruloplasmin (ferroxidase)
hg19_v1_chr6_+_16129321_16129553	0.324884	MSX1,2.p2	BC002860|MYLIP|29116|myosin regulatory light chain interacting protein	AF258586|MYLIP|29116|myosin regulatory light chain interacting protein	AF187016|MYLIP|29116|myosin regulatory light chain interacting protein	AF006003|MYLIP|29116|myosin regulatory light chain interacting protein	AF212221|MYLIP|29116|myosin regulatory light chain interacting protein	EU176184|MYLIP|29116|myosin regulatory light chain interacting protein	BT007055|MYLIP|29116|myosin regulatory light chain interacting protein
hg19_v1_chr11_+_7618416_7618421	0.314323	MSX1,2.p2	AK296718|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)
hg19_v1_chr1_-_108231122_108231127	0.306818	MSX1,2.p2	AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor	AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor	AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor	AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor	NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor
hg19_v1_chr1_+_84767288_84767338	0.293209	MSX1,2.p2	NM_001134663|SAMD13|148418|sterile alpha motif domain containing 13
hg19_v1_chrX_-_15620191_15620277	0.265728	MSX1,2.p2	AK315144|ACE2|59272|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	NM_021804|ACE2|59272|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	AB193259|ACE2|59272|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
hg19_v1_chr12_-_15114495_15114602	0.264853	MSX1,2.p2	BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta
hg19_v1_chr8_-_110620220_110620232	0.240645	MSX1,2.p2	AK297182|SYBU|55638|syntabulin (syntaxin-interacting)
hg19_v1_chr9_+_1050333_1050356	0.227333	MSX1,2.p2	BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2	NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2	BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2	NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2	AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2	AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2
hg19_v1_chr15_-_43594452_43594452	0.202737	MSX1,2.p2	AF363393|TGM7|116179|transglutaminase 7	NM_052955|TGM7|116179|transglutaminase 7
hg19_v1_chr4_+_88896838_88896866	0.187568	MSX1,2.p2	BX648003|SPP1|6696|secreted phosphoprotein 1	J04765|SPP1|6696|secreted phosphoprotein 1	AK057738|SPP1|6696|secreted phosphoprotein 1	AK075463|SPP1|6696|secreted phosphoprotein 1	AK290090|SPP1|6696|secreted phosphoprotein 1	AK296035|SPP1|6696|secreted phosphoprotein 1	BC007016|SPP1|6696|secreted phosphoprotein 1	BC017387|SPP1|6696|secreted phosphoprotein 1	BC022844|SPP1|6696|secreted phosphoprotein 1	AK295491|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr4_+_88896801_88896819	0.186257	MSX1,2.p2	NM_000582|SPP1|6696|secreted phosphoprotein 1	NM_001040058|SPP1|6696|secreted phosphoprotein 1	NM_001040060|SPP1|6696|secreted phosphoprotein 1	NM_001251829|SPP1|6696|secreted phosphoprotein 1	NM_001251830|SPP1|6696|secreted phosphoprotein 1	JF412667|SPP1|6696|secreted phosphoprotein 1	BC093033|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr4_+_88896868_88896891	0.182265	MSX1,2.p2	AK290104|SPP1|6696|secreted phosphoprotein 1	M83248|SPP1|6696|secreted phosphoprotein 1	AK315461|SPP1|6696|secreted phosphoprotein 1	AF052124|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr5_-_35938736_35938880	0.181818	MSX1,2.p2	NM_001042625|CAPSL|133690|calcyphosine-like	BC017586|CAPSL|133690|calcyphosine-like	NM_144647|CAPSL|133690|calcyphosine-like
hg19_v1_chr12_+_54891539_54891545	0.181501	MSX1,2.p2	BC093769|NCKAP1L|3071|NCK-associated protein 1-like	BC093771|NCKAP1L|3071|NCK-associated protein 1-like	BC143355|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr6_-_32920812_32920898	0.174829	MSX1,2.p2	CR450324|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	DQ892839|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	DQ896086|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	BC026279|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	AK291858|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	X62744|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	BC011447|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha	NM_006120|HLA-DMA|3108|major histocompatibility complex, class II, DM alpha
hg19_v1_chr2_-_69098502_69098648	0.169922	MSX1,2.p2	BC069080|BMP10|27302|bone morphogenetic protein 10	BC101734|BMP10|27302|bone morphogenetic protein 10	BC105063|BMP10|27302|bone morphogenetic protein 10	AF101441|BMP10|27302|bone morphogenetic protein 10	NM_014482|BMP10|27302|bone morphogenetic protein 10
hg19_v1_chr4_+_88896899_88896928	0.168236	MSX1,2.p2	AY956318|SPP1|6696|secreted phosphoprotein 1	X13694|SPP1|6696|secreted phosphoprotein 1
hg19_v1_chr9_+_1050367_1050374	0.166444	MSX1,2.p2	Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2
hg19_v1_chr1_+_151763174_151763354	0.165529	MSX1,2.p2	
hg19_v1_chr12_+_54891522_54891536	0.158351	MSX1,2.p2	M58285|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr4_-_156787377_156787424	0.156757	MSX1,2.p2	AJ252011|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal	NM_017419|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal
hg19_v1_chr6_-_154677868_154677962	0.154077	MSX1,2.p2	AK289917|IPCEF1|26034|interaction protein for cytohesin exchange factors 1	AJ310566|IPCEF1|26034|interaction protein for cytohesin exchange factors 1	NM_001130700|IPCEF1|26034|interaction protein for cytohesin exchange factors 1	NM_015553|IPCEF1|26034|interaction protein for cytohesin exchange factors 1
hg19_v1_chr15_-_40398573_40398648	0.153788	MSX1,2.p2	BC104983|BMF|90427|Bcl2 modifying factor	BC104985|BMF|90427|Bcl2 modifying factor	BC069328|BMF|90427|Bcl2 modifying factor	BC069505|BMF|90427|Bcl2 modifying factor	NM_033503|BMF|90427|Bcl2 modifying factor	AK024472|BMF|90427|Bcl2 modifying factor
hg19_v1_chr10_+_7745354_7745400	0.150947	MSX1,2.p2	AK225277|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr13_-_86373328_86373550	0.146966	MSX1,2.p2	BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6	BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6	BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6	BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6	BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6	NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6	AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6
hg19_v1_chr11_-_40315663_40315663	0.139138	MSX1,2.p2	AB046800|LRRC4C|57689|leucine rich repeat containing 4C	NM_020929|LRRC4C|57689|leucine rich repeat containing 4C
hg19_v1_chr4_-_41884568_41884591	0.136686	MSX1,2.p2	
hg19_v1_chr12_+_54891491_54891519	0.126423	MSX1,2.p2	NM_005337|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr17_-_19651586_19651745	0.1253	MSX1,2.p2	BC021194|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	BC008892|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	BC004370|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK314584|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK225513|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	M74542|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK093877|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	AK225505|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	BC004102|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1	NM_000691|ALDH3A1|218|aldehyde dehydrogenase 3 family, member A1
hg19_v1_chr19_+_6772705_6772743	0.124648	MSX1,2.p2	NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor	AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor	AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor
hg19_v1_chr11_-_64727608_64727608	0.123438	MSX1,2.p2	BC106951|C11orf85|283129|chromosome 11 open reading frame 85	BC106952|C11orf85|283129|chromosome 11 open reading frame 85	NM_001037225|C11orf85|283129|chromosome 11 open reading frame 85
hg19_v1_chr1_-_104239071_104239072	0.122912	MSX1,2.p2	AK292341|AMY1A|276|amylase, alpha 1A (salivary)	NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)
hg19_v1_chr12_+_86268072_86268181	0.12078	MSX1,2.p2	AK312066|NTS|4922|neurotensin	NM_006183|NTS|4922|neurotensin	BC010918|NTS|4922|neurotensin	AF157682|NTS|4922|neurotensin	U91618|NTS|4922|neurotensin	CR541936|NTS|4922|neurotensin
hg19_v1_chr1_-_242612757_242612783	0.118676	MSX1,2.p2	AK091691|PLD5|200150|phospholipase D family, member 5	AK307857|PLD5|200150|phospholipase D family, member 5	AK295421|PLD5|200150|phospholipase D family, member 5	AY461578|PLD5|200150|phospholipase D family, member 5	NM_001195811|PLD5|200150|phospholipase D family, member 5	NM_001195812|PLD5|200150|phospholipase D family, member 5
hg19_v1_chr12_+_51318743_51318859	0.116567	MSX1,2.p2	AY358797|METTL7A|25840|methyltransferase like 7A	AK024409|METTL7A|25840|methyltransferase like 7A	AK307071|METTL7A|25840|methyltransferase like 7A	AK225689|METTL7A|25840|methyltransferase like 7A	AK225595|METTL7A|25840|methyltransferase like 7A	AK023693|METTL7A|25840|methyltransferase like 7A	AK293356|METTL7A|25840|methyltransferase like 7A	AJ536233|METTL7A|25840|methyltransferase like 7A	BC008180|METTL7A|25840|methyltransferase like 7A	BC004492|METTL7A|25840|methyltransferase like 7A	EU832657|METTL7A|25840|methyltransferase like 7A	EU832734|METTL7A|25840|methyltransferase like 7A	AL050159|METTL7A|25840|methyltransferase like 7A	AF113007|METTL7A|25840|methyltransferase like 7A
hg19_v1_chr19_+_50016500_50016537	0.116133	MSX1,2.p2	U12255|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha
hg19_v1_chr9_-_97356007_97356074	0.115471	MSX1,2.p2	CR536483|FBP2|8789|fructose-1,6-bisphosphatase 2	HQ258389|FBP2|8789|fructose-1,6-bisphosphatase 2	BC113632|FBP2|8789|fructose-1,6-bisphosphatase 2	BC117477|FBP2|8789|fructose-1,6-bisphosphatase 2	NM_003837|FBP2|8789|fructose-1,6-bisphosphatase 2	Y10812|FBP2|8789|fructose-1,6-bisphosphatase 2
hg19_v1_chr6_-_55740387_55740392	0.113559	MSX1,2.p2	AK291559|BMP5|653|bone morphogenetic protein 5
hg19_v1_chr11_+_15133969_15133969	0.111635	MSX1,2.p2	AB236159|INSC|387755|inscuteable homolog (Drosophila)	NM_001031853|INSC|387755|inscuteable homolog (Drosophila)
hg19_v1_chr1_+_196621007_196621247	0.110159	MSX1,2.p2	NM_000186|CFH|3075|complement factor H	NM_001014975|CFH|3075|complement factor H	AK291395|CFH|3075|complement factor H	AK225649|CFH|3075|complement factor H	X07523|CFH|3075|complement factor H	Y00716|CFH|3075|complement factor H	BC037285|CFH|3075|complement factor H	BC012610|CFH|3075|complement factor H	BC110643|CFH|3075|complement factor H	BC073982|CFH|3075|complement factor H	BC142699|CFH|3075|complement factor H
hg19_v1_chr9_+_120466607_120466621	0.108004	MSX1,2.p2	AK293068|TLR4|7099|toll-like receptor 4	AK303730|TLR4|7099|toll-like receptor 4
hg19_v1_chr8_+_76452202_76452227	0.107923	MSX1,2.p2	BX571750|HNF4G|3174|hepatocyte nuclear factor 4, gamma	NM_004133|HNF4G|3174|hepatocyte nuclear factor 4, gamma	EU832451|HNF4G|3174|hepatocyte nuclear factor 4, gamma	HQ692842|HNF4G|3174|hepatocyte nuclear factor 4, gamma
hg19_v1_chr10_-_62332666_62332715	0.107753	MSX1,2.p2	AB209308|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	AK126851|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	NM_001204404|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v1_chr1_-_154832187_154832337	0.107143	MSX1,2.p2	HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
hg19_v1_chr9_+_134305476_134305488	0.106639	MSX1,2.p2	NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B
hg19_v1_chr16_-_3085541_3085541	0.106173	MSX1,2.p2	BC128602|CCDC64B|146439|coiled-coil domain containing 64B	NM_001103175|CCDC64B|146439|coiled-coil domain containing 64B
hg19_v1_chr14_-_94254765_94254765	0.105245	MSX1,2.p2	AY225516|PRIMA1|145270|proline rich membrane anchor 1	AY225517|PRIMA1|145270|proline rich membrane anchor 1	NM_178013|PRIMA1|145270|proline rich membrane anchor 1
hg19_v1_chr1_+_104198140_104198141	0.103134	MSX1,2.p2	NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)	AK292341|AMY1A|276|amylase, alpha 1A (salivary)
hg19_v1_chr19_-_14169970_14169970	0.103021	MSX1,2.p2	NM_001145028|PALM3|342979|paralemmin 3
hg19_v1_chr1_-_190446701_190446770	0.101038	MSX1,2.p2	AK123024|FAM5C|339479|family with sequence similarity 5, member C	AB111893|FAM5C|339479|family with sequence similarity 5, member C	NM_199051|FAM5C|339479|family with sequence similarity 5, member C
hg19_v1_chr12_-_105627182_105627182	0.100786	MSX1,2.p2	NM_001251905|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
hg19_v1_chr14_-_65409445_65409586	0.0981254	MSX1,2.p2	BC022820|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	AK225871|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC005277|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC067221|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC016756|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	X68314|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	X53463|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC039850|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	BC046164|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)	NM_002083|GPX2|2877|glutathione peroxidase 2 (gastrointestinal)
hg19_v1_chr9_+_120466625_120466750	0.0953179	MSX1,2.p2	U93091|TLR4|7099|toll-like receptor 4	BC025294|TLR4|7099|toll-like receptor 4	AK226155|TLR4|7099|toll-like receptor 4	U88880|TLR4|7099|toll-like receptor 4	BC117422|TLR4|7099|toll-like receptor 4	BC143841|TLR4|7099|toll-like receptor 4	AB445638|TLR4|7099|toll-like receptor 4
hg19_v1_chr2_+_163200582_163200614	0.0931206	MSX1,2.p2	NM_012198|GCA|25801|grancalcin, EF-hand calcium binding protein
hg19_v1_chr6_-_32977312_32977341	0.0923892	MSX1,2.p2	DQ891048|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	DQ894226|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947479|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947480|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947481|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AY947482|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	BC013183|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	M26039|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AK310153|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AK313551|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha
hg19_v1_chr14_+_21756135_21756135	0.090866	MSX1,2.p2	AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1	NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1
hg19_v1_chr9_-_116840551_116840587	0.0882132	MSX1,2.p2	X04225|AMBP|259|alpha-1-microglobulin/bikunin precursor	AK290837|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr6_+_127898318_127898318	0.0864084	MSX1,2.p2	AK303850|C6orf58|352999|chromosome 6 open reading frame 58	BC062712|C6orf58|352999|chromosome 6 open reading frame 58	NM_001010905|C6orf58|352999|chromosome 6 open reading frame 58
hg19_v1_chr4_-_66536182_66536212	0.0851872	MSX1,2.p2	AB209375|EPHA5|2044|EPH receptor A5
hg19_v1_chr16_+_66400524_66400542	0.0830452	MSX1,2.p2	NM_001795|CDH5|1003|cadherin 5, type 2 (vascular endothelium)
hg19_v1_chr5_+_139876504_139876626	0.0822637	MSX1,2.p2	AF217646|ANKHD1|54882|ankyrin repeat and KH domain containing 1
hg19_v1_chr10_+_7745325_7745339	0.081529	MSX1,2.p2	AK225329|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2	AK297334|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2	X07173|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr12_-_91398744_91398750	0.0803332	MSX1,2.p2	U59111|EPYC|1833|epiphycan
hg19_v1_chr10_+_114133838_114133969	0.079631	MSX1,2.p2	NM_203379|ACSL5|51703|acyl-CoA synthetase long-chain family member 5
hg19_v1_chrX_+_16964730_16965135	0.0786749	MSX1,2.p2	AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2	NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2	NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2	AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2	AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2
hg19_v1_chr4_-_70725792_70725869	0.0786483	MSX1,2.p2	S77383|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1	Y11195|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1	AK310845|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1	U08098|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1	BC027956|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1	NM_005420|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1
hg19_v1_chr6_+_50786438_50786632	0.0779403	MSX1,2.p2	NM_003221|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	BC037225|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	AK291172|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	AK313749|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	X95694|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	DQ891443|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	DQ894621|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
hg19_v1_chr4_-_186733372_186733409	0.0765808	MSX1,2.p2	AK225327|SORBS2|8470|sorbin and SH3 domain containing 2	AF049884|SORBS2|8470|sorbin and SH3 domain containing 2	NM_003603|SORBS2|8470|sorbin and SH3 domain containing 2	NM_001145670|SORBS2|8470|sorbin and SH3 domain containing 2
hg19_v1_chr11_-_8832881_8832881	0.0718656	MSX1,2.p2	NM_139157|ST5|6764|suppression of tumorigenicity 5	U15131|ST5|6764|suppression of tumorigenicity 5	U15780|ST5|6764|suppression of tumorigenicity 5
hg19_v1_chr6_-_31681845_31681850	0.0713406	MSX1,2.p2	
hg19_v1_chr5_+_43602738_43602941	0.0711719	MSX1,2.p2	AK297558|NNT|23530|nicotinamide nucleotide transhydrogenase	NM_012343|NNT|23530|nicotinamide nucleotide transhydrogenase	AL831822|NNT|23530|nicotinamide nucleotide transhydrogenase	BC064402|NNT|23530|nicotinamide nucleotide transhydrogenase
hg19_v1_chr10_-_123353771_123353771	0.0711536	MSX1,2.p2	AK308621|FGFR2|2263|fibroblast growth factor receptor 2	NM_001144916|FGFR2|2263|fibroblast growth factor receptor 2
hg19_v1_chr12_+_54892567_54892567	0.0704112	MSX1,2.p2	AK300783|NCKAP1L|3071|NCK-associated protein 1-like	NM_001184976|NCKAP1L|3071|NCK-associated protein 1-like
hg19_v1_chr10_+_114133775_114133781	0.0689596	MSX1,2.p2	AK000339|ACSL5|51703|acyl-CoA synthetase long-chain family member 5
hg19_v1_chr13_+_52598678_52598826	0.0684375	MSX1,2.p2	BC073862|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)	D87455|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)	NM_021645|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v1_chr9_-_116840460_116840541	0.0673598	MSX1,2.p2	X04494|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr9_-_116840604_116840670	0.0658788	MSX1,2.p2	AK310791|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr3_-_120401401_120401417	0.0654516	MSX1,2.p2	AK313563|HGD|3081|homogentisate 1,2-dioxygenase	NM_000187|HGD|3081|homogentisate 1,2-dioxygenase
hg19_v1_chr6_-_39693110_39693180	0.0649205	MSX1,2.p2	BC117307|KIF6|221458|kinesin family member 6	BC143444|KIF6|221458|kinesin family member 6	BC143445|KIF6|221458|kinesin family member 6	AK131471|KIF6|221458|kinesin family member 6	NM_145027|KIF6|221458|kinesin family member 6
hg19_v1_chr3_-_97754147_97754147	0.0641803	MSX1,2.p2	CR749263|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3	NM_001105580|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3
hg19_v1_chr7_+_94539209_94539209	0.0639383	MSX1,2.p2	NM_001166161|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A	NM_001166162|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A	NM_001166163|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A
hg19_v1_chr2_+_102803432_102803465	0.0639202	MSX1,2.p2	AF284434|IL1RL2|8808|interleukin 1 receptor-like 2	NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2	U49065|IL1RL2|8808|interleukin 1 receptor-like 2	BC107064|IL1RL2|8808|interleukin 1 receptor-like 2
hg19_v1_chr19_+_52264452_52264464	0.0611309	MSX1,2.p2	NM_001005738|FPR2|2358|formyl peptide receptor 2	M88107|FPR2|2358|formyl peptide receptor 2	D10922|FPR2|2358|formyl peptide receptor 2	AK290557|FPR2|2358|formyl peptide receptor 2
hg19_v1_chr1_+_153190059_153190059	0.0608942	MSX1,2.p2	NM_001195571|PRR9|574414|proline rich 9
hg19_v1_chr4_+_86699846_86699850	0.0594016	MSX1,2.p2	NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24
hg19_v1_chr10_-_62149487_62149633	0.0591632	MSX1,2.p2	U13616|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	NM_020987|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v1_chr4_-_76957139_76957349	0.0589868	MSX1,2.p2	BT006787|CXCL11|6373|chemokine (C-X-C motif) ligand 11	DQ895703|CXCL11|6373|chemokine (C-X-C motif) ligand 11	EU176355|CXCL11|6373|chemokine (C-X-C motif) ligand 11	Y15220|CXCL11|6373|chemokine (C-X-C motif) ligand 11	U59286|CXCL11|6373|chemokine (C-X-C motif) ligand 11	U66096|CXCL11|6373|chemokine (C-X-C motif) ligand 11	BC005292|CXCL11|6373|chemokine (C-X-C motif) ligand 11	AF002985|CXCL11|6373|chemokine (C-X-C motif) ligand 11	AF030514|CXCL11|6373|chemokine (C-X-C motif) ligand 11	BC110986|CXCL11|6373|chemokine (C-X-C motif) ligand 11	AF352781|CXCL11|6373|chemokine (C-X-C motif) ligand 11	BC012532|CXCL11|6373|chemokine (C-X-C motif) ligand 11	NM_005409|CXCL11|6373|chemokine (C-X-C motif) ligand 11
hg19_v1_chr17_-_78450247_78450408	0.0588828	MSX1,2.p2	EU831771|NPTX1|4884|neuronal pentraxin I	EU831849|NPTX1|4884|neuronal pentraxin I	BC089441|NPTX1|4884|neuronal pentraxin I	U61849|NPTX1|4884|neuronal pentraxin I	AK127335|NPTX1|4884|neuronal pentraxin I	NM_002522|NPTX1|4884|neuronal pentraxin I
hg19_v1_chr1_+_201979747_201979821	0.058429	MSX1,2.p2	U66894|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AK225446|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AF517841|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v1_chr8_+_21900389_21900439	0.0582348	MSX1,2.p2	BC105131|FGF17|8822|fibroblast growth factor 17	BC113489|FGF17|8822|fibroblast growth factor 17	BC143789|FGF17|8822|fibroblast growth factor 17	AY358869|FGF17|8822|fibroblast growth factor 17	AB009249|FGF17|8822|fibroblast growth factor 17	BC069475|FGF17|8822|fibroblast growth factor 17	NM_003867|FGF17|8822|fibroblast growth factor 17	HQ258756|FGF17|8822|fibroblast growth factor 17
hg19_v1_chr6_+_132859426_132859428	0.0578073	MSX1,2.p2	BC069083|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)	NM_175057|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)	AY183469|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)
hg19_v1_chr2_-_162929928_162929997	0.0569924	MSX1,2.p2	AY429533|DPP4|1803|dipeptidyl-peptidase 4	AY429531|DPP4|1803|dipeptidyl-peptidase 4	AY429532|DPP4|1803|dipeptidyl-peptidase 4	BC013329|DPP4|1803|dipeptidyl-peptidase 4	AB451339|DPP4|1803|dipeptidyl-peptidase 4	AB451488|DPP4|1803|dipeptidyl-peptidase 4	M80536|DPP4|1803|dipeptidyl-peptidase 4
hg19_v1_chr21_-_37852387_37852387	0.0564772	MSX1,2.p2	AF314090|CLDN14|23562|claudin 14	AY355348|CLDN14|23562|claudin 14	NM_001146079|CLDN14|23562|claudin 14	NM_144492|CLDN14|23562|claudin 14
hg19_v1_chr12_+_107078476_107078591	0.0555624	MSX1,2.p2	BC028582|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	NM_032491|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	AF332192|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	AK315698|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	BC030644|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	DQ890831|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	DQ893986|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)
hg19_v1_chr16_+_82068958_82069029	0.0554391	MSX1,2.p2	DQ893100|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	DQ896372|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2
hg19_v1_chr12_+_101188373_101188735	0.0543643	MSX1,2.p2	NM_178826|ANO4|121601|anoctamin 4	AK091591|ANO4|121601|anoctamin 4	AK316105|ANO4|121601|anoctamin 4	AK293810|ANO4|121601|anoctamin 4
hg19_v1_chr10_+_695887_696016	0.0539955	MSX1,2.p2	AK096000|C10orf108|414235|chromosome 10 open reading frame 108	AK296168|C10orf108|414235|chromosome 10 open reading frame 108	AK096013|C10orf108|414235|chromosome 10 open reading frame 108
hg19_v1_chr2_-_162931051_162931062	0.0529841	MSX1,2.p2	BC065265|DPP4|1803|dipeptidyl-peptidase 4	NM_001935|DPP4|1803|dipeptidyl-peptidase 4
hg19_v1_chrX_-_135863033_135863074	0.0524268	MSX1,2.p2	D25304|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	AK291742|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
hg19_v1_chr13_-_99910548_99910681	0.0523641	MSX1,2.p2	AF261135|GPR18|2841|G protein-coupled receptor 18	BC050646|GPR18|2841|G protein-coupled receptor 18	AF339781|GPR18|2841|G protein-coupled receptor 18	BC008569|GPR18|2841|G protein-coupled receptor 18	NM_001098200|GPR18|2841|G protein-coupled receptor 18	NM_005292|GPR18|2841|G protein-coupled receptor 18
hg19_v1_chrX_+_66788682_66788682	0.0519994	MSX1,2.p2	NM_001011645|AR|367|androgen receptor
hg19_v1_chr12_-_53171104_53171128	0.0519312	MSX1,2.p2	M99063|KRT76|51350|keratin 76	AK299390|KRT76|51350|keratin 76	NM_015848|KRT76|51350|keratin 76
hg19_v1_chr17_-_56618178_56618178	0.0518025	MSX1,2.p2	AK301914|SEPT4|5414|septin 4	AK302146|SEPT4|5414|septin 4	NM_001198713|SEPT4|5414|septin 4
hg19_v1_chr6_-_55740358_55740374	0.0507931	MSX1,2.p2	M60314|BMP5|653|bone morphogenetic protein 5	BC027958|BMP5|653|bone morphogenetic protein 5	NM_021073|BMP5|653|bone morphogenetic protein 5
hg19_v1_chr20_+_32150139_32150216	0.0503054	MSX1,2.p2	BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v1_chr11_+_1889902_1889902	0.0499298	MSX1,2.p2	NM_001013253|LSP1|4046|lymphocyte-specific protein 1
hg19_v1_chr16_+_82068910_82068954	0.0495596	MSX1,2.p2	BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2
hg19_v1_chr1_-_169703178_169703221	0.0486831	MSX1,2.p2	BC131551|SELE|6401|selectin E	M24736|SELE|6401|selectin E	M30640|SELE|6401|selectin E	BC142677|SELE|6401|selectin E	BC142711|SELE|6401|selectin E	AK314214|SELE|6401|selectin E	NM_000450|SELE|6401|selectin E
hg19_v1_chr13_+_102104941_102105049	0.0486267	MSX1,2.p2	AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)	AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)
hg19_v1_chr7_+_114066554_114066706	0.0481263	MSX1,2.p2	AF467253|FOXP2|93986|forkhead box P2	NM_001172767|FOXP2|93986|forkhead box P2	NM_148899|FOXP2|93986|forkhead box P2	AF467258|FOXP2|93986|forkhead box P2	AF467259|FOXP2|93986|forkhead box P2
hg19_v1_chr4_-_54457723_54457765	0.0481259	MSX1,2.p2	AK056823|LNX1|84708|ligand of numb-protein X 1	NM_001126328|LNX1|84708|ligand of numb-protein X 1
hg19_v1_chr7_+_80231503_80231540	0.0480121	MSX1,2.p2	NM_001001547|CD36|948|CD36 molecule (thrombospondin receptor)	AK129899|CD36|948|CD36 molecule (thrombospondin receptor)	AK300101|CD36|948|CD36 molecule (thrombospondin receptor)	AK312920|CD36|948|CD36 molecule (thrombospondin receptor)
hg19_v1_chr3_+_9944295_9944352	0.0471788	MSX1,2.p2	NM_153483|IL17RE|132014|interleukin 17 receptor E	BC035478|IL17RE|132014|interleukin 17 receptor E	BC137077|IL17RE|132014|interleukin 17 receptor E	BC137078|IL17RE|132014|interleukin 17 receptor E
hg19_v1_chr1_+_167298382_167298497	0.0471123	MSX1,2.p2	AY113189|POU2F1|5451|POU class 2 homeobox 1	BC001664|POU2F1|5451|POU class 2 homeobox 1	BC003571|POU2F1|5451|POU class 2 homeobox 1
hg19_v1_chrX_+_52113157_52113157	0.046467	MSX1,2.p2	DQ893147|XAGE2|9502|X antigen family, member 2	DQ896442|XAGE2|9502|X antigen family, member 2	NM_001079538|XAGE2B|728242|X antigen family, member 2B
hg19_v1_chr1_-_27953046_27953105	0.0462184	MSX1,2.p2	M27454|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog	AK301078|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog	NM_001042729|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog
hg19_v1_chr16_-_75498582_75498620	0.0461944	MSX1,2.p2	BC018082|TMEM170A|124491|transmembrane protein 170A	NM_145254|TMEM170A|124491|transmembrane protein 170A	AK298475|TMEM170A|124491|transmembrane protein 170A	BX647432|TMEM170A|124491|transmembrane protein 170A	BX648429|TMEM170A|124491|transmembrane protein 170A	BX648484|TMEM170A|124491|transmembrane protein 170A	AK311919|TMEM170A|124491|transmembrane protein 170A
hg19_v1_chr19_+_36203829_36203829	0.046087	MSX1,2.p2	AF130255|ZBTB32|27033|zinc finger and BTB domain containing 32	NM_014383|ZBTB32|27033|zinc finger and BTB domain containing 32
hg19_v1_chr10_-_116444374_116444413	0.0458871	MSX1,2.p2	NM_001003407|ABLIM1|3983|actin binding LIM protein 1	NM_001003408|ABLIM1|3983|actin binding LIM protein 1
hg19_v1_chr6_-_51952368_51952422	0.0458649	MSX1,2.p2	AF480064|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	AY092083|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	AY074797|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	NM_138694|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)	NM_170724|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)
hg19_v1_chr1_+_201979689_201979728	0.0451341	MSX1,2.p2	NM_001114309|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	NM_004433|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AK309265|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AK312273|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	U97156|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	BC003569|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	U73843|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	U73844|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )	AF016295|ELF3|1999|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v1_chr13_-_70682458_70682624	0.0429283	MSX1,2.p2	AF252283|KLHL1|57626|kelch-like 1 (Drosophila)	AB040923|KLHL1|57626|kelch-like 1 (Drosophila)	AK291435|KLHL1|57626|kelch-like 1 (Drosophila)	NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)
hg19_v1_chr3_+_42201658_42201853	0.0423014	MSX1,2.p2	BX647199|TRAK1|22906|trafficking protein, kinesin binding 1	NM_014965|TRAK1|22906|trafficking protein, kinesin binding 1	BC015922|TRAK1|22906|trafficking protein, kinesin binding 1	AK000754|TRAK1|22906|trafficking protein, kinesin binding 1	AM392573|TRAK1|22906|trafficking protein, kinesin binding 1	AM393596|TRAK1|22906|trafficking protein, kinesin binding 1	EU446989|TRAK1|22906|trafficking protein, kinesin binding 1
hg19_v1_chr3_+_9944511_9944578	0.0419184	MSX1,2.p2	AF458069|IL17RE|132014|interleukin 17 receptor E	AY358451|IL17RE|132014|interleukin 17 receptor E	NM_001193380|IL17RE|132014|interleukin 17 receptor E	NM_153480|IL17RE|132014|interleukin 17 receptor E	BC063110|IL17RE|132014|interleukin 17 receptor E	AK074238|IL17RE|132014|interleukin 17 receptor E	AK096801|IL17RE|132014|interleukin 17 receptor E	AK298025|IL17RE|132014|interleukin 17 receptor E	AK096793|IL17RE|132014|interleukin 17 receptor E	AK314476|IL17RE|132014|interleukin 17 receptor E	AK297697|IL17RE|132014|interleukin 17 receptor E
hg19_v1_chrX_-_48828250_48828252	0.0418166	MSX1,2.p2	BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1	NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1
hg19_v1_chr2_-_240322692_240322704	0.0412447	MSX1,2.p2	BC039904|HDAC4|9759|histone deacetylase 4
hg19_v1_chr1_-_86043932_86044049	0.0403507	MSX1,2.p2	BX648145|DDAH1|23576|dimethylarginine dimethylaminohydrolase 1	NM_001134445|DDAH1|23576|dimethylarginine dimethylaminohydrolase 1	AK304876|DDAH1|23576|dimethylarginine dimethylaminohydrolase 1
hg19_v1_chr10_-_74714563_74714581	0.0401807	MSX1,2.p2	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB
hg19_v1_chr19_+_6772801_6772815	0.040173	MSX1,2.p2	
hg19_v1_chr8_+_75736771_75736771	0.040043	MSX1,2.p2	CR749657|PI15|51050|peptidase inhibitor 15	NM_015886|PI15|51050|peptidase inhibitor 15
hg19_v1_chr7_+_90338711_90338855	0.0399713	MSX1,2.p2	AB020641|CDK14|5218|cyclin-dependent kinase 14	BC152436|CDK14|5218|cyclin-dependent kinase 14	BC167152|CDK14|5218|cyclin-dependent kinase 14	BC167156|CDK14|5218|cyclin-dependent kinase 14	NM_012395|CDK14|5218|cyclin-dependent kinase 14	BC136477|CDK14|5218|cyclin-dependent kinase 14	AK289782|CDK14|5218|cyclin-dependent kinase 14	BC152388|CDK14|5218|cyclin-dependent kinase 14
hg19_v1_chr3_+_56591237_56591255	0.0399629	MSX1,2.p2	AK125303|CCDC66|285331|coiled-coil domain containing 66	AL833326|CCDC66|285331|coiled-coil domain containing 66	AL832692|CCDC66|285331|coiled-coil domain containing 66	AK095688|CCDC66|285331|coiled-coil domain containing 66
hg19_v1_chr12_-_9760481_9760511	0.0395549	MSX1,2.p2	BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1	BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1	BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1	U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1	NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1	AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1
hg19_v1_chr20_+_43835637_43835694	0.0385684	MSX1,2.p2	NM_003007|SEMG1|6406|semenogelin I	BC005229|SEMG1|6406|semenogelin I	BC007096|SEMG1|6406|semenogelin I	BC011442|SEMG1|6406|semenogelin I	BC055416|SEMG1|6406|semenogelin I	J04440|SEMG1|6406|semenogelin I	BT007177|SEMG1|6406|semenogelin I
hg19_v1_chr14_-_50474237_50474237	0.0379698	MSX1,2.p2	AK091232|C14orf182|283551|chromosome 14 open reading frame 182	NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182
hg19_v1_chrX_+_72064875_72064969	0.0375688	MSX1,2.p2	NM_001080851|DMRTC1B|728656|DMRT-like family C1B	NM_033053|DMRTC1|63947|DMRT-like family C1
hg19_v1_chr2_+_61389628_61389628	0.0375165	MSX1,2.p2	NM_001143959|C2orf74|339804|chromosome 2 open reading frame 74
hg19_v1_chr3_+_56591182_56591222	0.0370931	MSX1,2.p2	NM_001012506|CCDC66|285331|coiled-coil domain containing 66	NM_001141947|CCDC66|285331|coiled-coil domain containing 66	BC047509|CCDC66|285331|coiled-coil domain containing 66	BC132827|CCDC66|285331|coiled-coil domain containing 66
hg19_v1_chr11_-_129062092_129062092	0.0367759	MSX1,2.p2	EF127492|ARHGAP32|9743|Rho GTPase activating protein 32	NM_001142685|ARHGAP32|9743|Rho GTPase activating protein 32
hg19_v1_chr1_-_26644755_26644853	0.0363893	MSX1,2.p2	NM_145345|UBXN11|91544|UBX domain protein 11	AK097368|UBXN11|91544|UBX domain protein 11
hg19_v1_chr16_-_73092533_73092640	0.0357036	MSX1,2.p2	D10250|ZFHX3|463|zinc finger homeobox 3	NM_001164766|ZFHX3|463|zinc finger homeobox 3
hg19_v1_chr3_-_114790221_114790260	0.0352611	MSX1,2.p2	BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20	NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20
hg19_v1_chr1_+_104292278_104292279	0.0351056	MSX1,2.p2	NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)	AK292341|AMY1A|276|amylase, alpha 1A (salivary)
hg19_v1_chr10_+_7745229_7745282	0.0344101	MSX1,2.p2	NM_002216|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr1_+_196788860_196788982	0.034394	MSX1,2.p2	NM_002113|CFHR1|3078|complement factor H-related 1	BC107771|CFHR1|3078|complement factor H-related 1	AK290830|CFHR1|3078|complement factor H-related 1	BC016755|CFHR1|3078|complement factor H-related 1	M65292|CFHR1|3078|complement factor H-related 1	M65293|CFHR1|3078|complement factor H-related 1	X56210|CFHR1|3078|complement factor H-related 1	DQ892762|CFHR1|3078|complement factor H-related 1	DQ896007|CFHR1|3078|complement factor H-related 1	X56209|CFHR1|3078|complement factor H-related 1
hg19_v1_chr10_-_45474210_45474329	0.0343737	MSX1,2.p2	BC011402|C10orf10|11067|chromosome 10 open reading frame 10	AB025244|C10orf10|11067|chromosome 10 open reading frame 10	AK002191|C10orf10|11067|chromosome 10 open reading frame 10	AK098476|C10orf10|11067|chromosome 10 open reading frame 10	AL136653|C10orf10|11067|chromosome 10 open reading frame 10	AB022718|C10orf10|11067|chromosome 10 open reading frame 10	AK300839|C10orf10|11067|chromosome 10 open reading frame 10	AK312496|C10orf10|11067|chromosome 10 open reading frame 10	NM_007021|C10orf10|11067|chromosome 10 open reading frame 10
hg19_v1_chr9_-_116840545_116840550	0.0337322	MSX1,2.p2	AY544123|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr9_-_21482311_21482311	0.0332515	MSX1,2.p2	AY358570|IFNE|338376|interferon, epsilon	NM_176891|IFNE|338376|interferon, epsilon
hg19_v1_chr3_-_79817058_79817058	0.0327109	MSX1,2.p2	NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v1_chr7_-_130371305_130371405	0.0326067	MSX1,2.p2	AF294347|TSGA13|114960|testis specific, 13	AF431815|TSGA13|114960|testis specific, 13	BC038415|TSGA13|114960|testis specific, 13	NM_052933|TSGA13|114960|testis specific, 13
hg19_v1_chr6_-_119470336_119470357	0.0325739	MSX1,2.p2	BX538186|FAM184A|79632|family with sequence similarity 184, member A	AK091682|FAM184A|79632|family with sequence similarity 184, member A	NM_001100411|FAM184A|79632|family with sequence similarity 184, member A
hg19_v1_chr8_+_21916858_21916872	0.032231	MSX1,2.p2	AK055842|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)
hg19_v1_chr5_-_138210992_138211035	0.032128	MSX1,2.p2	AK309790|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2	AB007876|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2	BC028172|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2	AK291064|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2	AK297332|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v1_chr21_+_43619798_43619921	0.0319796	MSX1,2.p2	AF323660|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1	NM_207627|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1	AF323661|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1	NM_207628|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1
hg19_v1_chr16_-_12010518_12010518	0.0319138	MSX1,2.p2	NM_001130007|GSPT1|2935|G1 to S phase transition 1
hg19_v1_chr3_-_137851123_137851228	0.031461	MSX1,2.p2	BC119639|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	BC119640|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	AF141315|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	AK225668|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase	NM_016161|A4GNT|51146|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v1_chrX_-_117107700_117107759	0.0309867	MSX1,2.p2	AK125356|KLHL13|90293|kelch-like 13 (Drosophila)	NM_033495|KLHL13|90293|kelch-like 13 (Drosophila)	NM_001168300|KLHL13|90293|kelch-like 13 (Drosophila)
hg19_v1_chr14_+_101295409_101295525	0.0308683	MSX1,2.p2	AF052114|MEG3|55384|maternally expressed 3 (non-protein coding)
hg19_v1_chr5_+_36608430_36608563	0.0308325	MSX1,2.p2	NM_001166695|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	U03504|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AY954110|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v1_chr7_+_39017608_39017608	0.0303665	MSX1,2.p2	NM_001166018|POU6F2|11281|POU class 6 homeobox 2	NM_007252|POU6F2|11281|POU class 6 homeobox 2
hg19_v1_chr10_+_124320180_124320272	0.0303489	MSX1,2.p2	AF159456|DMBT1|1755|deleted in malignant brain tumors 1	AJ000342|DMBT1|1755|deleted in malignant brain tumors 1	AJ243212|DMBT1|1755|deleted in malignant brain tumors 1	AJ243224|DMBT1|1755|deleted in malignant brain tumors 1	NM_004406|DMBT1|1755|deleted in malignant brain tumors 1	NM_007329|DMBT1|1755|deleted in malignant brain tumors 1	NM_017579|DMBT1|1755|deleted in malignant brain tumors 1	BC153299|DMBT1|1755|deleted in malignant brain tumors 1	AJ297935|DMBT1|1755|deleted in malignant brain tumors 1	AK304149|DMBT1|1755|deleted in malignant brain tumors 1	AK304128|DMBT1|1755|deleted in malignant brain tumors 1
hg19_v1_chr17_+_37856253_37856271	0.0302521	MSX1,2.p2	NM_004448|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
hg19_v1_chr8_+_24298442_24298621	0.0300218	MSX1,2.p2	BC058037|ADAM7|8756|ADAM metallopeptidase domain 7	AK292492|ADAM7|8756|ADAM metallopeptidase domain 7	NM_003817|ADAM7|8756|ADAM metallopeptidase domain 7	AF215824|ADAM7|8756|ADAM metallopeptidase domain 7
hg19_v1_chr17_-_47841468_47841491	0.0299984	MSX1,2.p2	AF123073|FAM117A|81558|family with sequence similarity 117, member A	BC065199|FAM117A|81558|family with sequence similarity 117, member A
hg19_v1_chr3_+_149192367_149192437	0.0299796	MSX1,2.p2	NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4
hg19_v1_chr12_-_113574020_113574043	0.0292728	MSX1,2.p2	AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)
hg19_v1_chr2_-_65090710_65090772	0.0286073	MSX1,2.p2	
hg19_v1_chr8_-_22089850_22089850	0.0281325	MSX1,2.p2	NM_001099335|PHYHIP|9796|phytanoyl-CoA 2-hydroxylase interacting protein	NM_014759|PHYHIP|9796|phytanoyl-CoA 2-hydroxylase interacting protein
hg19_v1_chr11_+_61717355_61717355	0.027984	MSX1,2.p2	BC015220|BEST1|7439|bestrophin 1	NM_001139443|BEST1|7439|bestrophin 1	NM_004183|BEST1|7439|bestrophin 1
hg19_v1_chr12_-_52761254_52761308	0.0278432	MSX1,2.p2	X99140|KRT85|3891|keratin 85	NM_002283|KRT85|3891|keratin 85
hg19_v1_chr1_+_167298280_167298317	0.0271106	MSX1,2.p2	NM_001198783|POU2F1|5451|POU class 2 homeobox 1
hg19_v1_chr11_-_101000457_101000549	0.0269041	MSX1,2.p2	AK304853|PGR|5241|progesterone receptor	NM_000926|PGR|5241|progesterone receptor
hg19_v1_chr2_-_211018294_211018388	0.026649	MSX1,2.p2	AK074441|C2orf67|151050|chromosome 2 open reading frame 67	BC070141|C2orf67|151050|chromosome 2 open reading frame 67
hg19_v1_chr14_-_68283293_68283306	0.0266255	MSX1,2.p2	AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26	AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26	BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26	CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26	CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26	AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26	NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26
hg19_v1_chr1_-_231005334_231005334	0.0260085	MSX1,2.p2	AK096166|C1orf198|84886|chromosome 1 open reading frame 198	NM_001136494|C1orf198|84886|chromosome 1 open reading frame 198
hg19_v1_chr20_-_34543280_34543280	0.0259765	MSX1,2.p2	NM_016558|SCAND1|51282|SCAN domain containing 1
hg19_v1_chr5_-_138211054_138211064	0.0259175	MSX1,2.p2	NM_015564|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2
hg19_v1_chr11_-_85469043_85469043	0.0256375	MSX1,2.p2	BC136450|SYTL2|54843|synaptotagmin-like 2	BC144114|SYTL2|54843|synaptotagmin-like 2	BC144115|SYTL2|54843|synaptotagmin-like 2	NM_001162951|SYTL2|54843|synaptotagmin-like 2	NM_001162953|SYTL2|54843|synaptotagmin-like 2
hg19_v1_chr9_+_18474078_18474098	0.0254491	MSX1,2.p2	NM_001040272|ADAMTSL1|92949|ADAMTS-like 1	NM_052866|ADAMTSL1|92949|ADAMTS-like 1	AK290667|ADAMTSL1|92949|ADAMTS-like 1	AY358327|ADAMTSL1|92949|ADAMTS-like 1
hg19_v1_chr12_+_109554391_109554404	0.0253008	MSX1,2.p2	AY382667|ACACB|32|acetyl-CoA carboxylase beta
hg19_v1_chr11_-_27681195_27681195	0.0252676	MSX1,2.p2	EF689009|BDNF|627|brain-derived neurotrophic factor	EF689010|BDNF|627|brain-derived neurotrophic factor	NM_001143816|BDNF|627|brain-derived neurotrophic factor	NM_170735|BDNF|627|brain-derived neurotrophic factor
hg19_v1_chr2_-_175499275_175499319	0.0252528	MSX1,2.p2	AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1	NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1	AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1	AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1
hg19_v1_chr2_+_88367298_88367401	0.0252158	MSX1,2.p2	BC126191|SMYD1|150572|SET and MYND domain containing 1	NM_198274|SMYD1|150572|SET and MYND domain containing 1	AK091724|SMYD1|150572|SET and MYND domain containing 1	BC017915|SMYD1|150572|SET and MYND domain containing 1	BX647878|SMYD1|150572|SET and MYND domain containing 1	AL832035|SMYD1|150572|SET and MYND domain containing 1	EU831908|SMYD1|150572|SET and MYND domain containing 1	EU832002|SMYD1|150572|SET and MYND domain containing 1	HQ258264|SMYD1|150572|SET and MYND domain containing 1	AY518933|SMYD1|150572|SET and MYND domain containing 1
hg19_v1_chr5_-_36301999_36302010	0.0246935	MSX1,2.p2	BC017951|RANBP3L|202151|RAN binding protein 3-like	AK058151|RANBP3L|202151|RAN binding protein 3-like	AK302947|RANBP3L|202151|RAN binding protein 3-like	BC047660|RANBP3L|202151|RAN binding protein 3-like	NM_001161429|RANBP3L|202151|RAN binding protein 3-like	NM_145000|RANBP3L|202151|RAN binding protein 3-like
hg19_v1_chr4_+_86699858_86699939	0.0245965	MSX1,2.p2	BC098580|ARHGAP24|83478|Rho GTPase activating protein 24	AK098193|ARHGAP24|83478|Rho GTPase activating protein 24
hg19_v1_chr21_-_31538970_31539043	0.0244334	MSX1,2.p2	BC101503|CLDN17|26285|claudin 17	BC101505|CLDN17|26285|claudin 17	NM_012131|CLDN17|26285|claudin 17	AY358094|CLDN17|26285|claudin 17
hg19_v1_chr6_-_32977351_32977388	0.0241402	MSX1,2.p2	AK301404|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	M38056|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	AK290714|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	M31525|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha	NM_002119|HLA-DOA|3111|major histocompatibility complex, class II, DO alpha
hg19_v1_chr12_-_9360960_9360965	0.0240629	MSX1,2.p2	BC111756|PZP|5858|pregnancy-zone protein	AK313639|PZP|5858|pregnancy-zone protein	NM_002864|PZP|5858|pregnancy-zone protein	X54380|PZP|5858|pregnancy-zone protein
hg19_v1_chr17_+_7743233_7743234	0.0240257	MSX1,2.p2	AB002344|KDM6B|23135|lysine (K)-specific demethylase 6B	NM_001080424|KDM6B|23135|lysine (K)-specific demethylase 6B
hg19_v1_chr17_+_7792034_7792168	0.0234996	MSX1,2.p2	NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3	NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3	U91543|CHD3|1107|chromodomain helicase DNA binding protein 3
hg19_v1_chr13_-_99959649_99959748	0.0233309	MSX1,2.p2	AK223390|GPR183|1880|G protein-coupled receptor 183	BC020752|GPR183|1880|G protein-coupled receptor 183	AK292091|GPR183|1880|G protein-coupled receptor 183	AK313443|GPR183|1880|G protein-coupled receptor 183	NM_004951|GPR183|1880|G protein-coupled receptor 183
hg19_v1_chr2_+_103378489_103378676	0.022888	MSX1,2.p2	CR936735|TMEM182|130827|transmembrane protein 182	NM_144632|TMEM182|130827|transmembrane protein 182	CR936731|TMEM182|130827|transmembrane protein 182	CR936732|TMEM182|130827|transmembrane protein 182	AK129862|TMEM182|130827|transmembrane protein 182	BC130306|TMEM182|130827|transmembrane protein 182	BC130308|TMEM182|130827|transmembrane protein 182	HQ258113|TMEM182|130827|transmembrane protein 182
hg19_v1_chr5_+_140514787_140515017	0.0228282	MSX1,2.p2	AK023190|PCDHB5|26167|protocadherin beta 5	NM_015669|PCDHB5|26167|protocadherin beta 5	BC001186|PCDHB5|26167|protocadherin beta 5	AB209393|PCDHB5|26167|protocadherin beta 5	AF134474|PCDHB5|26167|protocadherin beta 5	AF152498|PCDHB5|26167|protocadherin beta 5	AF217753|PCDHB5|26167|protocadherin beta 5	DQ891873|PCDHB5|26167|protocadherin beta 5	DQ895061|PCDHB5|26167|protocadherin beta 5
hg19_v1_chr13_-_46679143_46679210	0.0219562	MSX1,2.p2	BT006936|CPB2|1361|carboxypeptidase B2 (plasma)	DQ890567|CPB2|1361|carboxypeptidase B2 (plasma)	EU176478|CPB2|1361|carboxypeptidase B2 (plasma)	AK290829|CPB2|1361|carboxypeptidase B2 (plasma)	AB011969|CPB2|1361|carboxypeptidase B2 (plasma)	M75106|CPB2|1361|carboxypeptidase B2 (plasma)	BC007057|CPB2|1361|carboxypeptidase B2 (plasma)	NM_001872|CPB2|1361|carboxypeptidase B2 (plasma)	NM_016413|CPB2|1361|carboxypeptidase B2 (plasma)
hg19_v1_chrX_+_153656977_153657023	0.0219072	MSX1,2.p2	NM_001183|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AK289452|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AK075284|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AK301603|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	BC000724|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AK130616|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1
hg19_v1_chr1_+_54359859_54359883	0.0217308	MSX1,2.p2	AK290780|DIO1|1733|deiodinase, iodothyronine, type I	BC017955|DIO1|1733|deiodinase, iodothyronine, type I	BC107170|DIO1|1733|deiodinase, iodothyronine, type I	BC107171|DIO1|1733|deiodinase, iodothyronine, type I	NM_000792|DIO1|1733|deiodinase, iodothyronine, type I	NM_001039715|DIO1|1733|deiodinase, iodothyronine, type I	NM_001039716|DIO1|1733|deiodinase, iodothyronine, type I	NM_213593|DIO1|1733|deiodinase, iodothyronine, type I	FJ002243|DIO1|1733|deiodinase, iodothyronine, type I	FJ002244|DIO1|1733|deiodinase, iodothyronine, type I	AY560374|DIO1|1733|deiodinase, iodothyronine, type I	AY560375|DIO1|1733|deiodinase, iodothyronine, type I	AY560376|DIO1|1733|deiodinase, iodothyronine, type I	AY560377|DIO1|1733|deiodinase, iodothyronine, type I	AY560378|DIO1|1733|deiodinase, iodothyronine, type I	AY560379|DIO1|1733|deiodinase, iodothyronine, type I	AY560380|DIO1|1733|deiodinase, iodothyronine, type I	AY560381|DIO1|1733|deiodinase, iodothyronine, type I	AY560382|DIO1|1733|deiodinase, iodothyronine, type I	AY560383|DIO1|1733|deiodinase, iodothyronine, type I
hg19_v1_chr8_+_107738239_107738471	0.0217006	MSX1,2.p2	AK303695|OXR1|55074|oxidation resistance 1	NM_001198534|OXR1|55074|oxidation resistance 1	NM_001198535|OXR1|55074|oxidation resistance 1	AB075503|OXR1|55074|oxidation resistance 1	AK302844|OXR1|55074|oxidation resistance 1	AK316153|OXR1|55074|oxidation resistance 1	FN650109|OXR1|55074|oxidation resistance 1
hg19_v1_chrM_+_8857_9057	0.0215344	MSX1,2.p2	
hg19_v1_chr6_-_25930838_25930945	0.0213747	MSX1,2.p2	U90544|SLC17A2|10246|solute carrier family 17 (sodium phosphate), member 2	NM_005835|SLC17A2|10246|solute carrier family 17 (sodium phosphate), member 2
hg19_v1_chrX_+_16668280_16668314	0.0211815	MSX1,2.p2	L13220|S100G|795|S100 calcium binding protein G	NM_004057|S100G|795|S100 calcium binding protein G	X65869|S100G|795|S100 calcium binding protein G	BC112174|S100G|795|S100 calcium binding protein G
hg19_v1_chr11_-_59383616_59383616	0.0210138	MSX1,2.p2	AF185696|OSBP|5007|oxysterol binding protein	M86917|OSBP|5007|oxysterol binding protein	NM_002556|OSBP|5007|oxysterol binding protein
hg19_v1_chr1_+_196912910_196913009	0.0205822	MSX1,2.p2	BC022283|CFHR2|3080|complement factor H-related 2	NM_005666|CFHR2|3080|complement factor H-related 2	X64877|CFHR2|3080|complement factor H-related 2	DQ891405|CFHR2|3080|complement factor H-related 2	DQ894582|CFHR2|3080|complement factor H-related 2
hg19_v1_chr1_+_118472364_118472393	0.0203725	MSX1,2.p2	NM_006784|WDR3|10885|WD repeat domain 3	AK292438|WDR3|10885|WD repeat domain 3	AF083217|WDR3|10885|WD repeat domain 3
hg19_v1_chr5_-_42811959_42812023	0.0203253	MSX1,2.p2	Z11793|SEPP1|6414|selenoprotein P, plasma, 1	BC040075|SEPP1|6414|selenoprotein P, plasma, 1	BC046152|SEPP1|6414|selenoprotein P, plasma, 1	BC058919|SEPP1|6414|selenoprotein P, plasma, 1	AK225801|SEPP1|6414|selenoprotein P, plasma, 1	AL833145|SEPP1|6414|selenoprotein P, plasma, 1	BC005244|SEPP1|6414|selenoprotein P, plasma, 1	BC015875|SEPP1|6414|selenoprotein P, plasma, 1	BC030009|SEPP1|6414|selenoprotein P, plasma, 1	NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1	NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1	NM_005410|SEPP1|6414|selenoprotein P, plasma, 1
hg19_v1_chr1_+_153232178_153232178	0.019991	MSX1,2.p2	BC108290|LOR|4014|loricrin	NM_000427|LOR|4014|loricrin
hg19_v1_chr12_-_93323006_93323081	0.0195891	MSX1,2.p2	BC017837|EEA1|8411|early endosome antigen 1	AK292008|EEA1|8411|early endosome antigen 1	AK307918|EEA1|8411|early endosome antigen 1
hg19_v1_chr4_+_77356252_77356252	0.0195767	MSX1,2.p2	AB055660|SHROOM3|57619|shroom family member 3	NM_020859|SHROOM3|57619|shroom family member 3
hg19_v1_chr1_-_201915715_201915717	0.0194224	MSX1,2.p2	NM_012134|LMOD1|25802|leiomodin 1 (smooth muscle)
hg19_v1_chrX_-_135863104_135863115	0.0193189	MSX1,2.p2	BX537390|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
hg19_v1_chr16_+_53479685_53479692	0.0191967	MSX1,2.p2	BX537767|RBL2|5934|retinoblastoma-like 2 (p130)
hg19_v1_chr7_-_92855780_92855786	0.0187915	MSX1,2.p2	AK096002|HEPACAM2|253012|HEPACAM family member 2	AK298361|HEPACAM2|253012|HEPACAM family member 2	NM_001039372|HEPACAM2|253012|HEPACAM family member 2
hg19_v1_chr14_-_95599794_95599839	0.018783	MSX1,2.p2	HM595745|DICER1|23405|dicer 1, ribonuclease type III	NM_001195573|DICER1|23405|dicer 1, ribonuclease type III
hg19_v1_chr13_-_36050758_36050835	0.0187413	MSX1,2.p2	BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)	AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)	AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)	AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)	AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)	NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)
hg19_v1_chr3_-_42305438_42305438	0.0184538	MSX1,2.p2	BC008283|CCK|885|cholecystokinin	NM_001174138|CCK|885|cholecystokinin
hg19_v1_chr6_-_24383519_24383519	0.0180486	MSX1,2.p2	BC050704|DCDC2|51473|doublecortin domain containing 2	NM_001195610|DCDC2|51473|doublecortin domain containing 2
hg19_v1_chr19_-_7698569_7698633	0.0180067	MSX1,2.p2	BC038715|PCP2|126006|Purkinje cell protein 2	NM_174895|PCP2|126006|Purkinje cell protein 2	AK130855|PCP2|126006|Purkinje cell protein 2	BC025387|PCP2|126006|Purkinje cell protein 2
hg19_v1_chr9_-_116840673_116840755	0.0179198	MSX1,2.p2	AK310776|AMBP|259|alpha-1-microglobulin/bikunin precursor	BC041593|AMBP|259|alpha-1-microglobulin/bikunin precursor	NM_001633|AMBP|259|alpha-1-microglobulin/bikunin precursor
hg19_v1_chr4_+_113970784_113970884	0.0179019	MSX1,2.p2	NM_001148|ANK2|287|ankyrin 2, neuronal	NM_020977|ANK2|287|ankyrin 2, neuronal	AK299767|ANK2|287|ankyrin 2, neuronal	AK307601|ANK2|287|ankyrin 2, neuronal	X56958|ANK2|287|ankyrin 2, neuronal	Z26634|ANK2|287|ankyrin 2, neuronal
hg19_v1_chr5_-_169724614_169724689	0.0178618	MSX1,2.p2	BT007273|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	FN432830|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	DQ890681|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	DQ893863|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v1_chr2_+_219745243_219745284	0.01768	MSX1,2.p2	BC052234|WNT10A|80326|wingless-type MMTV integration site family, member 10A	AK024363|WNT10A|80326|wingless-type MMTV integration site family, member 10A	NM_025216|WNT10A|80326|wingless-type MMTV integration site family, member 10A	BC040026|WNT10A|80326|wingless-type MMTV integration site family, member 10A
hg19_v1_chr10_+_35484829_35484831	0.0175021	MSX1,2.p2	AK289379|CREM|1390|cAMP responsive element modulator	NM_182721|CREM|1390|cAMP responsive element modulator	NM_182722|CREM|1390|cAMP responsive element modulator	NM_182723|CREM|1390|cAMP responsive element modulator	NM_182724|CREM|1390|cAMP responsive element modulator	NM_182725|CREM|1390|cAMP responsive element modulator	AK291566|CREM|1390|cAMP responsive element modulator
hg19_v1_chr16_-_75498497_75498579	0.0169693	MSX1,2.p2	AY302139|TMEM170A|124491|transmembrane protein 170A
hg19_v1_chr14_-_91976630_91976644	0.0168432	MSX1,2.p2	NM_032560|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v1_chr2_-_231789940_231789940	0.0168295	MSX1,2.p2	BC032694|GPR55|9290|G protein-coupled receptor 55	NM_005683|GPR55|9290|G protein-coupled receptor 55
hg19_v1_chr11_-_6640644_6640644	0.0159907	MSX1,2.p2	AF017456|TPP1|1200|tripeptidyl peptidase I
hg19_v1_chr22_+_40322609_40322640	0.0159207	MSX1,2.p2	AK303280|GRAP2|9402|GRB2-related adaptor protein 2	AK303657|GRAP2|9402|GRB2-related adaptor protein 2	AK312830|GRAP2|9402|GRB2-related adaptor protein 2	AK303470|GRAP2|9402|GRB2-related adaptor protein 2
hg19_v1_chr2_+_137748461_137748461	0.0155254	MSX1,2.p2	NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B
hg19_v1_chr6_+_31583766_31583888	0.0154185	MSX1,2.p2	NM_032955|AIF1|199|allograft inflammatory factor 1	EF070982|AIF1|199|allograft inflammatory factor 1	AF299327|AIF1|199|allograft inflammatory factor 1	CR542153|AIF1|199|allograft inflammatory factor 1
hg19_v1_chr10_-_32667543_32667731	0.0154131	MSX1,2.p2	AF286905|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)	AK309309|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)	AK299676|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)
hg19_v1_chrX_-_11284094_11284123	0.0152613	MSX1,2.p2	AF177663|ARHGAP6|395|Rho GTPase activating protein 6	NM_013423|ARHGAP6|395|Rho GTPase activating protein 6	AK297713|ARHGAP6|395|Rho GTPase activating protein 6
hg19_v1_chr5_+_166711842_166711842	0.0152184	MSX1,2.p2	NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)
hg19_v1_chr7_+_136553398_136553415	0.0151009	MSX1,2.p2	AY034603|CHRM2|1129|cholinergic receptor, muscarinic 2	AY219704|CHRM2|1129|cholinergic receptor, muscarinic 2	NM_001006627|CHRM2|1129|cholinergic receptor, muscarinic 2	NM_001006630|CHRM2|1129|cholinergic receptor, muscarinic 2	AK290236|CHRM2|1129|cholinergic receptor, muscarinic 2	AL832585|CHRM2|1129|cholinergic receptor, muscarinic 2
hg19_v1_chr1_-_203154304_203154364	0.0150587	MSX1,2.p2	AB209459|CHI3L1|1116|chitinase 3-like 1 (cartilage glycoprotein-39)
hg19_v1_chr2_-_175462428_175462535	0.0150312	MSX1,2.p2	BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1	X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1
hg19_v1_chr12_-_11214892_11214892	0.0148862	MSX1,2.p2	BC115401|TAS2R46|259292|taste receptor, type 2, member 46	NM_176887|TAS2R46|259292|taste receptor, type 2, member 46
hg19_v1_chr1_+_33004969_33005120	0.01433	MSX1,2.p2	AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A	AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A	BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A
hg19_v1_chr20_+_43850009_43850030	0.0140623	MSX1,2.p2	BC005262|SEMG2|6407|semenogelin II	M81652|SEMG2|6407|semenogelin II	NM_003008|SEMG2|6407|semenogelin II	AK312932|SEMG2|6407|semenogelin II	BC056675|SEMG2|6407|semenogelin II	BC070306|SEMG2|6407|semenogelin II
hg19_v1_chr11_-_102576444_102576467	0.0138112	MSX1,2.p2	AF195192|MMP27|64066|matrix metallopeptidase 27	AY358752|MMP27|64066|matrix metallopeptidase 27	NM_022122|MMP27|64066|matrix metallopeptidase 27
hg19_v1_chr2_+_172778973_172778975	0.0133894	MSX1,2.p2	AF030424|HAT1|8520|histone acetyltransferase 1
hg19_v1_chr6_+_147527102_147527118	0.0131167	MSX1,2.p2	AK128121|STXBP5|134957|syntaxin binding protein 5 (tomosyn)
hg19_v1_chr11_-_8680382_8680382	0.0130797	MSX1,2.p2	AB002296|TRIM66|9866|tripartite motif containing 66	NM_014818|TRIM66|9866|tripartite motif containing 66
hg19_v1_chr5_-_156536185_156536247	0.0130011	MSX1,2.p2	NM_032782|HAVCR2|84868|hepatitis A virus cellular receptor 2
hg19_v1_chr1_+_201751757_201751814	0.0127231	MSX1,2.p2	AB033039|NAV1|89796|neuron navigator 1
hg19_v1_chr1_-_149900143_149900235	0.0125948	MSX1,2.p2	NM_005850|SF3B4|10262|splicing factor 3b, subunit 4, 49kDa	AK097315|SF3B4|10262|splicing factor 3b, subunit 4, 49kDa
hg19_v1_chr1_-_33338081_33338081	0.0125241	MSX1,2.p2	BC062297|FNDC5|252995|fibronectin type III domain containing 5	NM_001171941|FNDC5|252995|fibronectin type III domain containing 5
hg19_v1_chr1_-_169599349_169599376	0.0120805	MSX1,2.p2	M25322|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)	AK312884|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)	BC068533|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)	NM_003005|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)
hg19_v1_chr3_+_118892363_118892466	0.0119098	MSX1,2.p2	AK303924|UPK1B|7348|uroplakin 1B	AK313787|UPK1B|7348|uroplakin 1B	NM_006952|UPK1B|7348|uroplakin 1B	AB002155|UPK1B|7348|uroplakin 1B
hg19_v1_chr21_-_19775958_19775972	0.0115478	MSX1,2.p2	BC111749|TMPRSS15|5651|transmembrane protease, serine 15	NM_002772|TMPRSS15|5651|transmembrane protease, serine 15	U09860|TMPRSS15|5651|transmembrane protease, serine 15
hg19_v1_chr9_+_136501484_136501533	0.0109746	MSX1,2.p2	NM_000787|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	Y00096|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	BC017174|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	X13255|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	X13256|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	DQ893630|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)	EU176683|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)
hg19_v1_chr20_+_18122867_18122963	0.0109303	MSX1,2.p2	NM_020536|CSRP2BP|57325|CSRP2 binding protein	BC007537|CSRP2BP|57325|CSRP2 binding protein
hg19_v1_chr4_-_24981769_24981825	0.0109084	MSX1,2.p2	AK302905|CCDC149|91050|coiled-coil domain containing 149	AL834257|CCDC149|91050|coiled-coil domain containing 149	NM_173463|CCDC149|91050|coiled-coil domain containing 149
hg19_v1_chr2_-_25468909_25469047	0.0107251	MSX1,2.p2	AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha
hg19_v1_chr13_-_95131718_95131935	0.0106814	MSX1,2.p2	AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)
hg19_v1_chr2_+_65216482_65216500	0.0106672	MSX1,2.p2	AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v1_chrX_+_153657025_153657050	0.0105907	MSX1,2.p2	AM392567|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AM393312|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AM393872|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	DQ892139|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	DQ895333|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AK090462|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1	AL136851|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1
hg19_v1_chr20_+_23345020_23345020	0.0104036	MSX1,2.p2	AB100265|GZF1|64412|GDNF-inducible zinc finger protein 1	BC125188|GZF1|64412|GDNF-inducible zinc finger protein 1	BC154409|GZF1|64412|GDNF-inducible zinc finger protein 1	NM_022482|GZF1|64412|GDNF-inducible zinc finger protein 1
hg19_v1_chr17_+_48821106_48821114	0.0101082	MSX1,2.p2	AF147357|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)
hg19_v1_chr19_-_17375522_17375572	0.00998591	MSX1,2.p2	AB026290|USHBP1|83878|Usher syndrome 1C binding protein 1	AB040046|USHBP1|83878|Usher syndrome 1C binding protein 1	AK300617|USHBP1|83878|Usher syndrome 1C binding protein 1	AK096028|USHBP1|83878|Usher syndrome 1C binding protein 1	BC027910|USHBP1|83878|Usher syndrome 1C binding protein 1	NM_031941|USHBP1|83878|Usher syndrome 1C binding protein 1	AK315239|USHBP1|83878|Usher syndrome 1C binding protein 1	AK292031|USHBP1|83878|Usher syndrome 1C binding protein 1
hg19_v1_chr20_+_123230_123275	0.00997279	MSX1,2.p2	AK225987|DEFB126|81623|defensin, beta 126	AJ236910|DEFB126|81623|defensin, beta 126	BC069294|DEFB126|81623|defensin, beta 126	NM_030931|DEFB126|81623|defensin, beta 126	AF525928|DEFB126|81623|defensin, beta 126	AY122478|DEFB126|81623|defensin, beta 126
hg19_v1_chr3_+_183894736_183894836	0.00979196	MSX1,2.p2	U36188|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	DQ892876|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	DQ895915|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	BT007308|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit
hg19_v1_chr10_+_7745341_7745348	0.00963725	MSX1,2.p2	BC132685|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr15_+_62939509_62939509	0.00909095	MSX1,2.p2	AF402000|TLN2|83660|talin 2	NM_015059|TLN2|83660|talin 2
hg19_v1_chr17_+_27370155_27370243	0.00903716	MSX1,2.p2	AK022773|PIPOX|51268|pipecolic acid oxidase	BC027622|PIPOX|51268|pipecolic acid oxidase	AK027498|PIPOX|51268|pipecolic acid oxidase	AF134593|PIPOX|51268|pipecolic acid oxidase	AF136970|PIPOX|51268|pipecolic acid oxidase	DQ896538|PIPOX|51268|pipecolic acid oxidase	EU176447|PIPOX|51268|pipecolic acid oxidase	CR457155|PIPOX|51268|pipecolic acid oxidase
hg19_v1_chrX_+_153657119_153657190	0.00878986	MSX1,2.p2	AK091083|ATP6AP1|537|ATPase, H+ transporting, lysosomal accessory protein 1
hg19_v1_chr8_-_102803196_102803204	0.00860675	MSX1,2.p2	AK055073|NCALD|83988|neurocalcin delta	AK314523|NCALD|83988|neurocalcin delta
hg19_v1_chr10_-_13749622_13749756	0.00859775	MSX1,2.p2	AK057828|FRMD4A|55691|FERM domain containing 4A
hg19_v1_chr5_+_73109342_73109359	0.00851292	MSX1,2.p2	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor	NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor
hg19_v1_chr19_-_36399183_36399202	0.00850236	MSX1,2.p2	AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein	BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein	AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein
hg19_v1_chr14_-_24683035_24683035	0.00845002	MSX1,2.p2	BC113533|CHMP4A|29082|charged multivesicular body protein 4A	BC113535|CHMP4A|29082|charged multivesicular body protein 4A	BC143834|CHMP4A|29082|charged multivesicular body protein 4A	NM_014169|CHMP4A|29082|charged multivesicular body protein 4A
hg19_v1_chr5_-_169724817_169724885	0.00838622	MSX1,2.p2	NM_005565|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v1_chr1_-_51887740_51887792	0.00805133	MSX1,2.p2	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15	AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15	BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15	NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15
hg19_v1_chrX_-_62975005_62975030	0.00800389	MSX1,2.p2	NM_001173480|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9	NM_015185|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v1_chr5_+_70883137_70883166	0.0078638	MSX1,2.p2	AB050049|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)	AF301000|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)	AK310194|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)
hg19_v1_chr4_+_106473776_106473788	0.0078356	MSX1,2.p2	AK000191|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38	NM_001242729|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38	NM_017700|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38	BC105695|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38
hg19_v1_chr5_+_140809957_140810084	0.0077622	MSX1,2.p2	AY358946|PCDHGA12|26025|protocadherin gamma subfamily A, 12
hg19_v1_chr3_+_127641901_127641903	0.00774631	MSX1,2.p2	NM_207335|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	AM393308|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	AM393457|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12
hg19_v1_chr3_+_69812961_69812961	0.00748514	MSX1,2.p2	AB006988|MITF|4286|microphthalmia-associated transcription factor	NM_006722|MITF|4286|microphthalmia-associated transcription factor
hg19_v1_chr6_-_31830593_31830708	0.00734914	MSX1,2.p2	AK313006|NEU1|4758|sialidase 1 (lysosomal sialidase)	AK290966|NEU1|4758|sialidase 1 (lysosomal sialidase)	X78687|NEU1|4758|sialidase 1 (lysosomal sialidase)	BC000722|NEU1|4758|sialidase 1 (lysosomal sialidase)	AF040958|NEU1|4758|sialidase 1 (lysosomal sialidase)	NM_000434|NEU1|4758|sialidase 1 (lysosomal sialidase)
hg19_v1_chr19_+_40872709_40872857	0.00723722	MSX1,2.p2	BC000553|PLD3|23646|phospholipase D family, member 3
hg19_v1_chr16_-_56485113_56485308	0.00713644	MSX1,2.p2	AJ001810|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	CR456919|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AM392991|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AM393219|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	DQ892142|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	DQ895336|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BC001403|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BX647665|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	NM_007006|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	AK312721|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	BX537360|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21
hg19_v1_chr14_-_24584125_24584243	0.00701122	MSX1,2.p2	BX161381|NRL|4901|neural retina leucine zipper
hg19_v1_chr6_-_94129059_94129307	0.00699112	MSX1,2.p2	BC126125|EPHA7|2045|EPH receptor A7	BC126151|EPHA7|2045|EPH receptor A7	BC143857|EPHA7|2045|EPH receptor A7	BC143858|EPHA7|2045|EPH receptor A7	L36642|EPHA7|2045|EPH receptor A7	BC027940|EPHA7|2045|EPH receptor A7	AK313529|EPHA7|2045|EPH receptor A7	AB209269|EPHA7|2045|EPH receptor A7	NM_004440|EPHA7|2045|EPH receptor A7
hg19_v1_chrX_-_62974987_62975004	0.00694702	MSX1,2.p2	BC018106|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9	BC043497|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9	AB007884|ARHGEF9|23229|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v1_chr6_+_54173202_54173348	0.0068797	MSX1,2.p2	BC070278|TINAG|27283|tubulointerstitial nephritis antigen	NM_014464|TINAG|27283|tubulointerstitial nephritis antigen	AK312918|TINAG|27283|tubulointerstitial nephritis antigen	BC056235|TINAG|27283|tubulointerstitial nephritis antigen	AB022277|TINAG|27283|tubulointerstitial nephritis antigen	AF195116|TINAG|27283|tubulointerstitial nephritis antigen	AF195117|TINAG|27283|tubulointerstitial nephritis antigen	EU832329|TINAG|27283|tubulointerstitial nephritis antigen	EU832414|TINAG|27283|tubulointerstitial nephritis antigen
hg19_v1_chr3_-_15798057_15798097	0.00668197	MSX1,2.p2	AY367056|ANKRD28|23243|ankyrin repeat domain 28	NM_001195099|ANKRD28|23243|ankyrin repeat domain 28	BC035170|ANKRD28|23243|ankyrin repeat domain 28	BC048975|ANKRD28|23243|ankyrin repeat domain 28
hg19_v1_chr15_+_99645152_99645329	0.00665276	MSX1,2.p2	BC151243|SYNM|23336|synemin, intermediate filament protein	AB002351|SYNM|23336|synemin, intermediate filament protein	AJ310521|SYNM|23336|synemin, intermediate filament protein	AJ310522|SYNM|23336|synemin, intermediate filament protein	AJ697971|SYNM|23336|synemin, intermediate filament protein	NM_015286|SYNM|23336|synemin, intermediate filament protein	NM_145728|SYNM|23336|synemin, intermediate filament protein	AF359284|SYNM|23336|synemin, intermediate filament protein
hg19_v1_chr19_+_36119934_36119950	0.00655941	MSX1,2.p2	BC031682|RBM42|79171|RNA binding motif protein 42
hg19_v1_chr1_+_3541587_3541632	0.00647607	MSX1,2.p2	AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like	AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like	BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like
hg19_v1_chr5_-_169724734_169724776	0.00628897	MSX1,2.p2	BC016618|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	AK310369|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v1_chr22_+_35462125_35462173	0.0059778	MSX1,2.p2	CR749372|ISX|91464|intestine-specific homeobox	AK025181|ISX|91464|intestine-specific homeobox	NM_001008494|ISX|91464|intestine-specific homeobox
hg19_v1_chr20_+_24929862_24929865	0.00584772	MSX1,2.p2	NM_003650|CST7|8530|cystatin F (leukocystatin)
hg19_v1_chr6_-_114384008_114384041	0.0057464	MSX1,2.p2	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
hg19_v1_chr11_-_102323353_102323874	0.00570008	MSX1,2.p2	DQ891654|TMEM123|114908|transmembrane protein 123	DQ894842|TMEM123|114908|transmembrane protein 123	AY358696|TMEM123|114908|transmembrane protein 123	BC032296|TMEM123|114908|transmembrane protein 123	AY157580|TMEM123|114908|transmembrane protein 123	AK075420|TMEM123|114908|transmembrane protein 123	AY008283|TMEM123|114908|transmembrane protein 123	AK225790|TMEM123|114908|transmembrane protein 123	NM_052932|TMEM123|114908|transmembrane protein 123
hg19_v1_chr4_+_88571453_88571458	0.00563258	MSX1,2.p2	NM_001079911|DMP1|1758|dentin matrix acidic phosphoprotein 1	NM_004407|DMP1|1758|dentin matrix acidic phosphoprotein 1	U65378|DMP1|1758|dentin matrix acidic phosphoprotein 1	U89012|DMP1|1758|dentin matrix acidic phosphoprotein 1
hg19_v1_chrX_+_144908927_144909195	0.00562332	MSX1,2.p2	NM_004709|CXorf1|9142|chromosome X open reading frame 1	Y08902|CXorf1|9142|chromosome X open reading frame 1	BC113600|CXorf1|9142|chromosome X open reading frame 1	BC113604|CXorf1|9142|chromosome X open reading frame 1	HQ258719|CXorf1|9142|chromosome X open reading frame 1
hg19_v1_chr1_-_118472178_118472186	0.00533819	MSX1,2.p2	BC013132|GDAP2|54834|ganglioside induced differentiation associated protein 2
hg19_v1_chr3_+_25470067_25470222	0.00532877	MSX1,2.p2	BC060794|RARB|5915|retinoic acid receptor, beta	AK292032|RARB|5915|retinoic acid receptor, beta	AB307688|RARB|5915|retinoic acid receptor, beta	HQ692864|RARB|5915|retinoic acid receptor, beta
hg19_v1_chr2_+_84743576_84743578	0.00505869	MSX1,2.p2	AK094676|DNAH6|1768|dynein, axonemal, heavy chain 6	NM_001370|DNAH6|1768|dynein, axonemal, heavy chain 6
hg19_v1_chr5_+_70883179_70883251	0.00458236	MSX1,2.p2	AF261884|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)	BC065027|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)
hg19_v1_chr11_-_72463416_72463516	0.00454591	MSX1,2.p2	AY553630|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	NM_001040118|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
hg19_v1_chr1_+_33004771_33004771	0.0045026	MSX1,2.p2	NM_001040441|ZBTB8A|653121|zinc finger and BTB domain containing 8A
hg19_v1_chr7_+_120629444_120629444	0.00438411	MSX1,2.p2	NM_001105533|C7orf58|79974|chromosome 7 open reading frame 58
hg19_v1_chr8_+_80523351_80523367	0.00437728	MSX1,2.p2	AK297594|STMN2|11075|stathmin-like 2	AK308557|STMN2|11075|stathmin-like 2	AK297485|STMN2|11075|stathmin-like 2
hg19_v1_chr2_+_28718937_28718985	0.00437175	MSX1,2.p2	BC150633|PLB1|151056|phospholipase B1	NM_001170585|PLB1|151056|phospholipase B1	NM_153021|PLB1|151056|phospholipase B1	BC153864|PLB1|151056|phospholipase B1
hg19_v1_chr6_-_31107110_31107126	0.00428302	MSX1,2.p2	AB031480|PSORS1C2|170680|psoriasis susceptibility 1 candidate 2	AF484420|PSORS1C2|170680|psoriasis susceptibility 1 candidate 2	NM_014069|PSORS1C2|170680|psoriasis susceptibility 1 candidate 2
hg19_v1_chr6_-_46047978_46048084	0.00383545	MSX1,2.p2	AY032602|CLIC5|53405|chloride intracellular channel 5	AK097048|CLIC5|53405|chloride intracellular channel 5	NM_001114086|CLIC5|53405|chloride intracellular channel 5
hg19_v1_chr4_+_71062241_71062243	0.00381907	MSX1,2.p2	EF113908|ODAM|54959|odontogenic, ameloblast asssociated	NM_017855|ODAM|54959|odontogenic, ameloblast asssociated
hg19_v1_chr12_-_21487831_21487833	0.0037583	MSX1,2.p2	NM_021094|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2	AK296044|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2
hg19_v1_chr19_+_46171501_46171514	0.00344019	MSX1,2.p2	NM_000164|GIPR|2696|gastric inhibitory polypeptide receptor	U39231|GIPR|2696|gastric inhibitory polypeptide receptor	BC093723|GIPR|2696|gastric inhibitory polypeptide receptor	BC101673|GIPR|2696|gastric inhibitory polypeptide receptor	BC143300|GIPR|2696|gastric inhibitory polypeptide receptor	BC143302|GIPR|2696|gastric inhibitory polypeptide receptor	S79852|GIPR|2696|gastric inhibitory polypeptide receptor
hg19_v1_chr2_+_171034654_171034717	0.00332205	MSX1,2.p2	AF369908|MYO3B|140469|myosin IIIB	AF391554|MYO3B|140469|myosin IIIB	AF391555|MYO3B|140469|myosin IIIB	AF391556|MYO3B|140469|myosin IIIB	AF391557|MYO3B|140469|myosin IIIB	AF391558|MYO3B|140469|myosin IIIB	NM_001083615|MYO3B|140469|myosin IIIB	NM_001171642|MYO3B|140469|myosin IIIB	NM_138995|MYO3B|140469|myosin IIIB	BC136620|MYO3B|140469|myosin IIIB	BC144307|MYO3B|140469|myosin IIIB
hg19_v1_chr15_-_42749710_42749764	0.0032617	MSX1,2.p2	AL831983|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC029366|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC070244|ZFP106|64397|zinc finger protein 106 homolog (mouse)	AF205632|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC058023|ZFP106|64397|zinc finger protein 106 homolog (mouse)	BC111396|ZFP106|64397|zinc finger protein 106 homolog (mouse)	NM_022473|ZFP106|64397|zinc finger protein 106 homolog (mouse)	AK294529|ZFP106|64397|zinc finger protein 106 homolog (mouse)	AK091929|ZFP106|64397|zinc finger protein 106 homolog (mouse)
hg19_v1_chr10_-_98336445_98336573	0.00291683	MSX1,2.p2	BC020959|TM9SF3|56889|transmembrane 9 superfamily member 3	AK027788|TM9SF3|56889|transmembrane 9 superfamily member 3	AY358819|TM9SF3|56889|transmembrane 9 superfamily member 3
hg19_v1_chr6_-_13408368_13408368	0.00253073	MSX1,2.p2	AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1
hg19_v1_chr14_-_105259937_105259937	0.00239456	MSX1,2.p2	BX648205|AKT1|207|v-akt murine thymoma viral oncogene homolog 1	NM_005163|AKT1|207|v-akt murine thymoma viral oncogene homolog 1
hg19_v1_chr10_+_7745284_7745320	0.00191858	MSX1,2.p2	AK291379|ITIH2|3698|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v1_chr4_+_90033967_90033967	0.00178846	MSX1,2.p2	AK027653|TIGD2|166815|tigger transposable element derived 2	NM_145715|TIGD2|166815|tigger transposable element derived 2
hg19_v1_chr1_+_3541550_3541579	0.00178637	MSX1,2.p2	NM_182752|TPRG1L|127262|tumor protein p63 regulated 1-like	AK096427|TPRG1L|127262|tumor protein p63 regulated 1-like
hg19_v1_chr2_+_166095911_166095954	0.00175327	MSX1,2.p2	AK289656|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	NM_001040142|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	DQ993531|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	BC029489|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	BC047398|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	BC048417|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit
hg19_v1_chr3_+_108855560_108855566	0.0015712	MSX1,2.p2	AK026416|FLJ22763|401081|uncharacterized LOC401081
hg19_v1_chr7_-_27159213_27159213	0.00126795	MSX1,2.p2	BC015180|HOXA3|3200|homeobox A3	NM_030661|HOXA3|3200|homeobox A3
hg19_v1_chr1_-_68915631_68915641	0.00123355	MSX1,2.p2	AK289925|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	BC075035|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	BC075036|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	NM_000329|RPE65|6121|retinal pigment epithelium-specific protein 65kDa	U18991|RPE65|6121|retinal pigment epithelium-specific protein 65kDa
hg19_v1_chr10_-_65028825_65029005	0.00122239	MSX1,2.p2	BC126403|JMJD1C|221037|jumonji domain containing 1C	BC143722|JMJD1C|221037|jumonji domain containing 1C	BX537954|JMJD1C|221037|jumonji domain containing 1C	NM_004241|JMJD1C|221037|jumonji domain containing 1C	BC108649|JMJD1C|221037|jumonji domain containing 1C
hg19_v1_chr8_-_102803438_102803438	0.00108538	MSX1,2.p2	NM_032041|NCALD|83988|neurocalcin delta
hg19_v1_chr1_+_36772696_36772717	0.00049316	MSX1,2.p2	NM_024676|SH3D21|79729|SH3 domain containing 21	AK297015|SH3D21|79729|SH3 domain containing 21	AK056459|SH3D21|79729|SH3 domain containing 21
hg19_v1_chr1_+_29213619_29213695	0.000393039	MSX1,2.p2	M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
hg19_v1_chr4_-_155533757_155533797	0.000384094	MSX1,2.p2	BT007081|FGG|2266|fibrinogen gamma chain
hg19_v1_chr8_+_66933790_66933848	0.000353332	MSX1,2.p2	NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
hg19_v1_chr1_+_26644380_26644420	9.53137e-05	MSX1,2.p2	NM_001803|CD52|1043|CD52 molecule
