hg19_v2_chr4_-_149365827_149365870	0.308869	AUGUGCC	ENST00000344721.4|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2
hg19_v2_chr18_+_13218769_13218792	0.219561	AUGUGCC	ENST00000399848.3|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4 	ENST00000361205.4|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr12_+_104458235_104458344	0.206627	AUGUGCC	ENST00000229330.4|HCFC2|ENSG00000111727.7|host cell factor C2
hg19_v2_chr2_-_202316260_202316308	0.177452	AUGUGCC	ENST00000332624.3|TRAK2|ENSG00000115993.7|trafficking protein, kinesin binding 2
hg19_v2_chr18_-_74207146_74207183	0.169064	AUGUGCC	ENST00000443185.2|ZNF516|ENSG00000101493.6|zinc finger protein 516
hg19_v2_chr1_-_173991434_173991556	0.158047	AUGUGCC	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr9_-_91793675_91793698	0.116093	AUGUGCC	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr1_-_217262969_217262995	0.0981394	AUGUGCC	ENST00000361525.3|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr17_+_57642886_57643006	0.0898094	AUGUGCC	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr6_+_105404899_105404931	0.0892366	AUGUGCC	ENST00000345080.4|LIN28B|ENSG00000187772.6|lin-28 homolog B (C. elegans)
hg19_v2_chr2_-_213403565_213403584	0.0890572	AUGUGCC	ENST00000342788.4|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 	ENST00000436443.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr14_-_39901618_39901704	0.0844271	AUGUGCC	ENST00000554932.1|FBXO33|ENSG00000165355.7|F-box protein 33 	ENST00000298097.7|FBXO33|ENSG00000165355.7|F-box protein 33
hg19_v2_chr10_-_94003003_94003013	0.0811997	AUGUGCC	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr1_-_204329013_204329086	0.0790052	AUGUGCC	ENST00000272203.3|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6 	ENST00000414478.1|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6
hg19_v2_chr10_+_20105157_20105184	0.0786199	AUGUGCC	ENST00000377242.3|PLXDC2|ENSG00000120594.12|plexin domain containing 2 	ENST00000377252.4|PLXDC2|ENSG00000120594.12|plexin domain containing 2
hg19_v2_chr5_-_160973649_160973713	0.0730034	AUGUGCC	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chr14_-_90085458_90085557	0.0700426	AUGUGCC	ENST00000345097.4|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000555855.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000555353.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr8_+_61429416_61429502	0.0675707	AUGUGCC	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr12_-_94853716_94853738	0.0617624	AUGUGCC	ENST00000339839.5|CCDC41|ENSG00000173588.10|coiled-coil domain containing 41 	ENST00000397809.5|CCDC41|ENSG00000173588.10|coiled-coil domain containing 41 	ENST00000547575.1|CCDC41|ENSG00000173588.10|coiled-coil domain containing 41
hg19_v2_chr4_-_170924888_170924950	0.0598271	AUGUGCC	ENST00000502832.1|MFAP3L|ENSG00000198948.7|microfibrillar-associated protein 3-like 	ENST00000393704.3|MFAP3L|ENSG00000198948.7|microfibrillar-associated protein 3-like
hg19_v2_chr12_-_49449107_49449107	0.0577061	AUGUGCC	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr4_-_185395672_185395734	0.0547822	AUGUGCC	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr6_+_87865262_87865339	0.0526757	AUGUGCC	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr17_-_27278304_27278408	0.0518603	AUGUGCC	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr1_-_10856694_10856715	0.0511302	AUGUGCC	ENST00000377022.3|CASZ1|ENSG00000130940.10|castor zinc finger 1 	ENST00000344008.5|CASZ1|ENSG00000130940.10|castor zinc finger 1
hg19_v2_chr17_+_30264014_30264086	0.0506097	AUGUGCC	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr3_-_12705600_12705725	0.0468612	AUGUGCC	ENST00000542177.1|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000442415.2|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000251849.4|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1
hg19_v2_chr5_+_173315283_173315335	0.046394	AUGUGCC	ENST00000265085.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chr5_-_175964366_175964429	0.0454947	AUGUGCC	ENST00000274811.4|RNF44|ENSG00000146083.7|ring finger protein 44
hg19_v2_chr20_+_19867150_19867175	0.0407788	AUGUGCC	ENST00000255006.6|RIN2|ENSG00000132669.8|Ras and Rab interactor 2
hg19_v2_chr2_-_157189180_157189290	0.0381616	AUGUGCC	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr5_+_102455853_102455961	0.0371892	AUGUGCC	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr1_-_115053781_115053853	0.0353238	AUGUGCC	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chrX_+_44732757_44732860	0.0350002	AUGUGCC	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr14_-_69619823_69619879	0.0318181	AUGUGCC	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr5_-_132073210_132073330	0.0317182	AUGUGCC	ENST00000378735.1|KIF3A|ENSG00000131437.11|kinesin family member 3A 	ENST00000378746.4|KIF3A|ENSG00000131437.11|kinesin family member 3A
hg19_v2_chr19_-_5978090_5978129	0.0304011	AUGUGCC	ENST00000592621.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000034275.8|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591092.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591333.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000590623.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000439268.2|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000587159.1|RANBP3|ENSG00000031823.10|RAN binding protein 3
hg19_v2_chr17_-_1420182_1420279	0.0298185	AUGUGCC	ENST00000421807.2|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr3_+_62304712_62304732	0.0295746	AUGUGCC	ENST00000494481.1|C3orf14|ENSG00000114405.6|chromosome 3 open reading frame 14
hg19_v2_chr5_-_41510656_41510713	0.0288308	AUGUGCC	ENST00000377801.3|PLCXD3|ENSG00000182836.5|phosphatidylinositol-specific phospholipase C, X domain containing 3
hg19_v2_chr2_+_106361333_106361520	0.0271053	AUGUGCC	ENST00000233154.4|NCK2|ENSG00000071051.9|NCK adaptor protein 2 	ENST00000451463.2|NCK2|ENSG00000071051.9|NCK adaptor protein 2
hg19_v2_chr6_-_146135880_146135952	0.0258532	AUGUGCC	ENST00000237281.4|FBXO30|ENSG00000118496.4|F-box protein 30
hg19_v2_chr22_+_40573921_40573946	0.0257082	AUGUGCC	ENST00000454349.2|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B 	ENST00000335727.9|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B
hg19_v2_chr17_-_5389477_5389537	0.0226565	AUGUGCC	ENST00000572834.1|DERL2|ENSG00000072849.6|derlin 2 	ENST00000570848.1|DERL2|ENSG00000072849.6|derlin 2 	ENST00000571971.1|DERL2|ENSG00000072849.6|derlin 2 	ENST00000158771.4|DERL2|ENSG00000072849.6|derlin 2
hg19_v2_chrX_+_40944871_40944888	0.0224881	AUGUGCC	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr17_+_48796905_48797008	0.0219865	AUGUGCC	ENST00000505658.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000393227.2|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000240304.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000311571.3|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000505619.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000544170.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000510984.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae)
hg19_v2_chrX_+_12156582_12156603	0.0208961	AUGUGCC	ENST00000380682.1|FRMPD4|ENSG00000169933.8|FERM and PDZ domain containing 4
hg19_v2_chr8_+_75736761_75736777	0.0200965	AUGUGCC	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr4_+_62066941_62066992	0.0195585	AUGUGCC	ENST00000512091.2|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr2_-_152955537_152955593	0.0189451	AUGUGCC	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr2_+_60983361_60983418	0.0188276	AUGUGCC	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr19_-_33166045_33166113	0.0183235	AUGUGCC	ENST00000586693.3|ANKRD27|ENSG00000105186.10|ankyrin repeat domain 27 (VPS9 domain) 	ENST00000587352.1|ANKRD27|ENSG00000105186.10|ankyrin repeat domain 27 (VPS9 domain) 	ENST00000586463.1|ANKRD27|ENSG00000105186.10|ankyrin repeat domain 27 (VPS9 domain) 	ENST00000306065.4|ANKRD27|ENSG00000105186.10|ankyrin repeat domain 27 (VPS9 domain)
hg19_v2_chr12_+_2162447_2162464	0.0170617	AUGUGCC	ENST00000335762.5|CACNA1C|ENSG00000151067.16|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENST00000399655.1|CACNA1C|ENSG00000151067.16|calcium channel, voltage-dependent, L type, alpha 1C subunit
hg19_v2_chr5_+_141488070_141488094	0.0158127	AUGUGCC	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr6_+_89790490_89790506	0.0150497	AUGUGCC	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr1_+_212458834_212458896	0.0143414	AUGUGCC	ENST00000261461.2|PPP2R5A|ENSG00000066027.7|protein phosphatase 2, regulatory subunit B', alpha
hg19_v2_chr5_+_118407053_118407239	0.0128995	AUGUGCC	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
hg19_v2_chr11_+_9406169_9406210	0.0126116	AUGUGCC	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr9_-_74980113_74980163	0.0122938	AUGUGCC	ENST00000376962.5|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376960.4|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000237937.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr12_-_57824739_57824834	0.0122919	AUGUGCC	ENST00000347140.3|R3HDM2|ENSG00000179912.15|R3H domain containing 2 	ENST00000402412.1|R3HDM2|ENSG00000179912.15|R3H domain containing 2
hg19_v2_chr6_-_99873145_99873207	0.010288	AUGUGCC	ENST00000369239.5|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein 	ENST00000438806.1|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein
hg19_v2_chr3_+_31574189_31574282	0.0101906	AUGUGCC	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr7_+_65338230_65338293	0.0087122	AUGUGCC	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr10_-_15762124_15762149	0.00835807	AUGUGCC	ENST00000378076.3|ITGA8|ENSG00000077943.7|integrin, alpha 8
hg19_v2_chr1_+_22889953_22890070	0.00828574	AUGUGCC	ENST00000374644.4|EPHA8|ENSG00000070886.6|EPH receptor A8 	ENST00000166244.3|EPHA8|ENSG00000070886.6|EPH receptor A8 	ENST00000538803.1|EPHA8|ENSG00000070886.6|EPH receptor A8
hg19_v2_chr12_+_12870055_12870119	0.00772699	AUGUGCC	ENST00000228872.4|CDKN1B|ENSG00000111276.6|cyclin-dependent kinase inhibitor 1B (p27, Kip1)
hg19_v2_chr1_+_193091080_193091222	0.00745249	AUGUGCC	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr20_-_43438912_43439165	0.00673593	AUGUGCC	ENST00000541604.2|RIMS4|ENSG00000101098.8|regulating synaptic membrane exocytosis 4 	ENST00000372851.3|RIMS4|ENSG00000101098.8|regulating synaptic membrane exocytosis 4
hg19_v2_chr12_+_94542459_94542513	0.00666427	AUGUGCC	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr11_-_57092381_57092433	0.00616002	AUGUGCC	ENST00000358252.3|TNKS1BP1|ENSG00000149115.9|tankyrase 1 binding protein 1, 182kDa
hg19_v2_chr11_+_18720316_18720338	0.00409376	AUGUGCC	ENST00000280734.2|TMEM86A|ENSG00000151117.4|transmembrane protein 86A
hg19_v2_chr10_+_27793197_27793247	0.00289595	AUGUGCC	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr1_-_118472216_118472262	0.00282949	AUGUGCC	ENST00000369443.5|GDAP2|ENSG00000196505.6|ganglioside induced differentiation associated protein 2
hg19_v2_chr12_-_100536608_100536667	0.00218634	AUGUGCC	ENST00000356828.3|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like 	ENST00000279907.7|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like
hg19_v2_chr4_+_41937131_41937211	0.0020707	AUGUGCC	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr13_-_50367057_50367142	0.00184633	AUGUGCC	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chr2_+_85198216_85198305	0.00178572	AUGUGCC	ENST00000456682.1|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1 	ENST00000409785.4|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1
hg19_v2_chr14_-_21737610_21737653	0.00170366	AUGUGCC	ENST00000320084.7|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000449098.1|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000336053.6|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2)
hg19_v2_chr10_+_112679301_112679346	0.00162627	AUGUGCC	ENST00000265277.5|SHOC2|ENSG00000108061.7|soc-2 suppressor of clear homolog (C. elegans) 	ENST00000369452.4|SHOC2|ENSG00000108061.7|soc-2 suppressor of clear homolog (C. elegans)
hg19_v2_chr9_+_95087766_95087950	0.00113248	AUGUGCC	ENST00000375587.3|CENPP|ENSG00000188312.9|centromere protein P
hg19_v2_chr7_-_155604967_155605105	0.000324621	AUGUGCC	ENST00000297261.2|SHH|ENSG00000164690.3|sonic hedgehog
hg19_v2_chr4_+_7194247_7194312	0.000200478	AUGUGCC	ENST00000507866.2|SORCS2|ENSG00000184985.12|sortilin-related VPS10 domain containing receptor 2
hg19_v2_chr13_-_52027134_52027343	5.96808e-05	AUGUGCC	ENST00000311234.4|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000425000.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000463928.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000442263.3|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000398119.2|INTS6|ENSG00000102786.10|integrator complex subunit 6
