hg19_v2_chr2_-_1748214_1748295	8.7459	SOX3_SOX2	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr6_-_30654977_30655009	7.89088	SOX3_SOX2	ENST00000399199.3|PPP1R18|ENSG00000146112.7|protein phosphatase 1, regulatory subunit 18
hg19_v2_chr1_-_205419053_205419068	5.98629	SOX3_SOX2	ENST00000367154.1|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chr19_-_49864746_49864780	5.5975	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr1_-_153029980_153030013	5.34612	SOX3_SOX2	ENST00000392653.2|SPRR2A|ENSG00000241794.1|small proline-rich protein 2A
hg19_v2_chr19_-_51472823_51472929	5.05724	SOX3_SOX2	ENST00000310157.2|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr10_-_105845674_105845760	4.71631	SOX3_SOX2	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr15_-_74495188_74495220	4.28263	SOX3_SOX2	ENST00000563965.1|STRA6|ENSG00000137868.14|stimulated by retinoic acid 6 	ENST00000395105.4|STRA6|ENSG00000137868.14|stimulated by retinoic acid 6
hg19_v2_chr4_-_80993717_80993850	4.16066	SOX3_SOX2	ENST00000307333.7|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr2_-_216257849_216257907	4.12485	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr6_+_114178512_114178586	3.92817	SOX3_SOX2	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr2_-_26205340_26205381	3.72249	SOX3_SOX2	ENST00000264712.3|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr1_-_205391178_205391214	3.71667	SOX3_SOX2	ENST00000367153.4|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367151.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000391936.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367149.3|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chrX_-_38080077_38080177	3.63566	SOX3_SOX2	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chr4_-_103266355_103266371	3.62754	SOX3_SOX2	ENST00000424970.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr12_-_95611149_95611249	3.50444	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr20_-_56284816_56284958	3.41276	SOX3_SOX2	ENST00000395819.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000341744.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr8_-_124553437_124553453	3.2769	SOX3_SOX2	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr5_+_137514687_137514774	3.23364	SOX3_SOX2	ENST00000394894.3|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr1_-_153066998_153067008	3.23092	SOX3_SOX2	ENST00000368750.3|SPRR2E|ENSG00000203785.4|small proline-rich protein 2E
hg19_v2_chr5_+_137514834_137514910	3.11084	SOX3_SOX2	ENST00000508792.1|KIF20A|ENSG00000112984.7|kinesin family member 20A 	ENST00000504621.1|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr12_+_95611516_95611527	3.06768	SOX3_SOX2	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr1_-_6479963_6479986	2.99497	SOX3_SOX2	ENST00000377836.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000487437.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000489730.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000377834.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2
hg19_v2_chr6_+_64282447_64282586	2.99195	SOX3_SOX2	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr14_+_85996471_85996497	2.98634	SOX3_SOX2	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr4_-_80994210_80994284	2.95165	SOX3_SOX2	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr1_-_153013588_153013605	2.8878	SOX3_SOX2	ENST00000360379.3|SPRR2D|ENSG00000163216.6|small proline-rich protein 2D
hg19_v2_chr12_-_57634475_57634532	2.86761	SOX3_SOX2	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr1_-_17307173_17307330	2.83506	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr2_-_208031542_208031595	2.81513	SOX3_SOX2	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr8_-_7274385_7274385	2.81502	SOX3_SOX2	ENST00000318157.2|DEFB4B|ENSG00000177257.2|defensin, beta 4B
hg19_v2_chr7_+_5632436_5632454	2.77074	SOX3_SOX2	ENST00000340250.6|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 	ENST00000382361.3|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
hg19_v2_chr15_-_70388943_70389220	2.76189	SOX3_SOX2	ENST00000559048.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000560939.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000440567.3|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000557907.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558379.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000451782.2|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000559929.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr2_+_102314161_102314206	2.62071	SOX3_SOX2	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr5_-_16936340_16936418	2.56119	SOX3_SOX2	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr9_+_124461603_124461649	2.55263	SOX3_SOX2	ENST00000373782.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr14_+_23305760_23305781	2.55184	SOX3_SOX2	ENST00000311852.6|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr2_+_210444142_210444194	2.53632	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr11_+_125496619_125496646	2.53581	SOX3_SOX2	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr13_-_24007815_24007872	2.51718	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr1_-_28520384_28520393	2.48067	SOX3_SOX2	ENST00000305392.3|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr1_-_26232951_26232959	2.48032	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr7_+_73703728_73703807	2.47965	SOX3_SOX2	ENST00000361545.5|CLIP2|ENSG00000106665.11|CAP-GLY domain containing linker protein 2 	ENST00000223398.6|CLIP2|ENSG00000106665.11|CAP-GLY domain containing linker protein 2
hg19_v2_chr12_+_53491220_53491229	2.46467	SOX3_SOX2	ENST00000548547.1|IGFBP6|ENSG00000167779.3|insulin-like growth factor binding protein 6 	ENST00000301464.3|IGFBP6|ENSG00000167779.3|insulin-like growth factor binding protein 6
hg19_v2_chr21_-_16437126_16437205	2.43666	SOX3_SOX2	ENST00000318948.4|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr7_+_134464414_134464429	2.4277	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_+_171154347_171154389	2.41891	SOX3_SOX2	ENST00000209929.7|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional) 	ENST00000441535.1|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional)
hg19_v2_chr21_-_16437255_16437340	2.37022	SOX3_SOX2	ENST00000400199.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1 	ENST00000400202.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr7_+_134464376_134464413	2.35118	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr22_+_30792846_30792978	2.34639	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr4_-_103266219_103266296	2.34276	SOX3_SOX2	ENST00000394833.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr2_+_33172221_33172369	2.3279	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr4_-_80994471_80994485	2.32779	SOX3_SOX2	ENST00000295465.4|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr20_+_6748311_6748352	2.30004	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr1_+_209602156_209602183	2.28738	SOX3_SOX2	ENST00000429156.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000366437.3|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000603283.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000431096.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding)
hg19_v2_chr3_-_139258521_139258671	2.26824	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr10_+_17272608_17272692	2.25736	SOX3_SOX2	ENST00000421459.2|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr2_-_224903995_224904036	2.25197	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr5_-_146833485_146833522	2.2222	SOX3_SOX2	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr13_+_110959598_110959614	2.21854	SOX3_SOX2	ENST00000360467.5|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chr7_-_41742697_41742714	2.18809	SOX3_SOX2	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr12_-_67072714_67072925	2.17601	SOX3_SOX2	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr4_-_80993854_80993906	2.13551	SOX3_SOX2	ENST00000346652.6|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr12_-_122240792_122240858	2.12028	SOX3_SOX2	ENST00000545885.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000542933.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000541657.1|RHOF|ENSG00000139725.3|ras homolog family member F (in filopodia) 	ENST00000428029.2|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000541694.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000536662.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000535643.1|AC084018.1|ENSG00000212694.4|AC084018.1
hg19_v2_chr9_+_103235365_103235419	2.07064	SOX3_SOX2	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr17_-_7297519_7297593	2.05218	SOX3_SOX2	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr4_-_175443788_175443795	2.04899	SOX3_SOX2	ENST00000541923.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr3_-_27525865_27525887	2.04133	SOX3_SOX2	ENST00000445684.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr4_+_154387480_154387536	2.02959	SOX3_SOX2	ENST00000409663.3|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000440693.1|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000409959.3|KIAA0922|ENSG00000121210.11|KIAA0922
hg19_v2_chr18_+_21719018_21719061	1.99856	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr4_-_175443484_175443650	1.97203	SOX3_SOX2	ENST00000514584.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000542498.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000296521.7|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000422112.2|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000504433.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr8_+_86376081_86376142	1.92643	SOX3_SOX2	ENST00000285379.5|CA2|ENSG00000104267.5|carbonic anhydrase II
hg19_v2_chr18_-_28682374_28682415	1.92437	SOX3_SOX2	ENST00000280904.6|DSC2|ENSG00000134755.10|desmocollin 2
hg19_v2_chr19_-_49865639_49865718	1.91939	SOX3_SOX2	ENST00000593945.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000601519.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000539846.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000596757.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000311227.2|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr2_+_30454390_30454409	1.91688	SOX3_SOX2	ENST00000395323.3|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000406087.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000404397.1|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr12_-_52845910_52845938	1.89883	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr12_+_95611569_95611608	1.89483	SOX3_SOX2	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr3_-_141747950_141748004	1.88159	SOX3_SOX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr16_+_58497567_58497586	1.87362	SOX3_SOX2	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr7_-_148581251_148581347	1.86609	SOX3_SOX2	ENST00000478654.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000460911.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000350995.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr1_-_26232522_26232644	1.8641	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr11_+_60691924_60691966	1.84159	SOX3_SOX2	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr17_+_36584662_36584730	1.84015	SOX3_SOX2	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr14_+_100070869_100070893	1.83888	SOX3_SOX2	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr13_-_25745857_25745886	1.83499	SOX3_SOX2	ENST00000381853.3|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chr12_+_70760056_70760085	1.83437	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr4_-_103266626_103266647	1.82972	SOX3_SOX2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr18_+_21718924_21718963	1.79642	SOX3_SOX2	ENST00000399496.3|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr17_-_7297833_7297889	1.78678	SOX3_SOX2	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr1_+_25071848_25071944	1.76974	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr16_+_30934376_30934392	1.7135	SOX3_SOX2	ENST00000562798.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19 	ENST00000471231.2|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr5_-_157002775_157002790	1.71105	SOX3_SOX2	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr3_+_186915274_186915274	1.69216	SOX3_SOX2	ENST00000312295.4|RTP1|ENSG00000175077.5|receptor (chemosensory) transporter protein 1
hg19_v2_chr1_-_6545502_6545548	1.68732	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr20_-_13971255_13971264	1.68515	SOX3_SOX2	ENST00000284951.5|SEL1L2|ENSG00000101251.7|sel-1 suppressor of lin-12-like 2 (C. elegans) 	ENST00000378072.5|SEL1L2|ENSG00000101251.7|sel-1 suppressor of lin-12-like 2 (C. elegans)
hg19_v2_chr2_+_65215604_65215625	1.68513	SOX3_SOX2	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr6_-_27880174_27880174	1.68245	SOX3_SOX2	ENST00000303324.2|OR2B2|ENSG00000168131.2|olfactory receptor, family 2, subfamily B, member 2
hg19_v2_chr14_-_57272366_57272391	1.6784	SOX3_SOX2	ENST00000554788.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000554845.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000408990.3|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr15_+_90744533_90744610	1.67456	SOX3_SOX2	ENST00000411539.2|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr1_-_28520447_28520453	1.66732	SOX3_SOX2	ENST00000539896.1|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr2_-_9771075_9771153	1.64965	SOX3_SOX2	ENST00000446619.1|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 	ENST00000238081.3|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr22_+_27053422_27053488	1.63796	SOX3_SOX2	ENST00000413665.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000421151.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000456129.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000430080.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr2_-_75796837_75796849	1.63496	SOX3_SOX2	ENST00000233712.1|EVA1A|ENSG00000115363.9|eva-1 homolog A (C. elegans)
hg19_v2_chrX_+_135251783_135251813	1.6342	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr18_-_31802282_31802282	1.63211	SOX3_SOX2	ENST00000535475.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr19_-_19051927_19051934	1.62844	SOX3_SOX2	ENST00000600077.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr8_-_105601134_105601252	1.62531	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr1_+_16085244_16085255	1.62432	SOX3_SOX2	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr7_-_148580563_148580601	1.59586	SOX3_SOX2	ENST00000476773.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chrX_+_135229600_135229624	1.59227	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr18_+_56530794_56530845	1.58399	SOX3_SOX2	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr7_-_107643674_107643700	1.57509	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr17_+_65374075_65374271	1.57239	SOX3_SOX2	ENST00000581322.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr3_+_141105235_141105307	1.57165	SOX3_SOX2	ENST00000503809.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chrX_+_135252050_135252085	1.5591	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr22_-_32555275_32555296	1.55112	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr4_+_54966198_54966340	1.54428	SOX3_SOX2	ENST00000326902.2|GSX2|ENSG00000180613.6|GS homeobox 2 	ENST00000503800.1|GSX2|ENSG00000180613.6|GS homeobox 2
hg19_v2_chr12_-_8815215_8815298	1.5373	SOX3_SOX2	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr7_+_107301065_107301080	1.53136	SOX3_SOX2	ENST00000265715.3|SLC26A4|ENSG00000091137.7|solute carrier family 26 (anion exchanger), member 4
hg19_v2_chrX_+_12993336_12993363	1.52599	SOX3_SOX2	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr4_-_175443943_175444049	1.52252	SOX3_SOX2	ENST00000296522.6|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr2_+_54683419_54683442	1.50455	SOX3_SOX2	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr22_-_36357671_36357714	1.48668	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr15_+_63335899_63336001	1.48372	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr4_+_156680143_156680152	1.47228	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr3_-_48470838_48470872	1.47105	SOX3_SOX2	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr9_-_131940526_131940546	1.46992	SOX3_SOX2	ENST00000372491.2|IER5L|ENSG00000188483.6|immediate early response 5-like
hg19_v2_chrX_+_135229559_135229576	1.46249	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr20_-_5591626_5591677	1.45342	SOX3_SOX2	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr20_-_56285595_56285656	1.45273	SOX3_SOX2	ENST00000395816.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000347215.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr12_-_25055177_25055258	1.44977	SOX3_SOX2	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr18_+_3448455_3448497	1.4495	SOX3_SOX2	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr9_+_124103625_124103625	1.44509	SOX3_SOX2	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr2_-_235405168_235405277	1.4368	SOX3_SOX2	ENST00000339728.3|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr1_-_26233423_26233482	1.43382	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr7_-_148581360_148581425	1.41732	SOX3_SOX2	ENST00000320356.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000541220.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000483967.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000536783.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr7_+_23146271_23146285	1.41508	SOX3_SOX2	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chrX_+_135251835_135251887	1.4142	SOX3_SOX2	ENST00000456445.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr1_+_50569575_50569586	1.41069	SOX3_SOX2	ENST00000371827.1|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr6_-_112115074_112115094	1.40984	SOX3_SOX2	ENST00000368667.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr1_-_201123546_201123581	1.40002	SOX3_SOX2	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr2_+_102953608_102953727	1.39641	SOX3_SOX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr14_+_32798462_32798539	1.39262	SOX3_SOX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr6_+_41040678_41040722	1.37568	SOX3_SOX2	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr9_+_116638562_116638606	1.37339	SOX3_SOX2	ENST00000374126.5|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000288466.7|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr7_+_77167343_77167369	1.3713	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr14_-_73493784_73493822	1.3701	SOX3_SOX2	ENST00000553891.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr14_+_32798547_32798606	1.3656	SOX3_SOX2	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr1_-_154155595_154155673	1.3626	SOX3_SOX2	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr8_+_39759794_39759899	1.35342	SOX3_SOX2	ENST00000518804.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000519154.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522495.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522840.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1
hg19_v2_chr4_+_144303093_144303132	1.34453	SOX3_SOX2	ENST00000505913.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr22_+_30792980_30793047	1.34129	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr7_+_18535346_18535399	1.34062	SOX3_SOX2	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr1_-_201123586_201123637	1.32534	SOX3_SOX2	ENST00000414605.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367334.5|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367332.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr2_-_9143786_9143942	1.31838	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr12_-_95009837_95009854	1.31441	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr22_-_38713428_38713446	1.31439	SOX3_SOX2	ENST00000403904.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000405675.3|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr2_+_17721230_17721255	1.31289	SOX3_SOX2	ENST00000457525.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr14_+_85996507_85996572	1.30942	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chrX_+_69509927_69509970	1.30436	SOX3_SOX2	ENST00000374403.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr5_-_147211226_147211349	1.30184	SOX3_SOX2	ENST00000296695.5|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr5_-_157002749_157002768	1.30052	SOX3_SOX2	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr21_+_30671690_30671762	1.28591	SOX3_SOX2	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr5_-_147211190_147211219	1.27908	SOX3_SOX2	ENST00000510027.2|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr17_-_18585131_18585171	1.27666	SOX3_SOX2	ENST00000443457.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000583002.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr2_+_33172012_33172039	1.27381	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr17_-_73149921_73149971	1.26748	SOX3_SOX2	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr12_+_22778291_22778357	1.26556	SOX3_SOX2	ENST00000545979.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr2_+_210444748_210444770	1.2585	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr19_+_45409011_45409069	1.2557	SOX3_SOX2	ENST00000252486.4|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000446996.1|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000434152.1|APOE|ENSG00000130203.5|apolipoprotein E
hg19_v2_chr6_-_32374900_32374905	1.25427	SOX3_SOX2	ENST00000374995.3|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000374993.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000414363.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000540315.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000544175.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000429232.2|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000454136.3|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000446536.2|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated)
hg19_v2_chr10_-_33247124_33247207	1.254	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr4_+_118955500_118955612	1.2538	SOX3_SOX2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr10_+_102759045_102759233	1.25365	SOX3_SOX2	ENST00000370220.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr6_+_130339710_130339745	1.25292	SOX3_SOX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr14_+_76776957_76777061	1.24597	SOX3_SOX2	ENST00000512784.1|ESRRB|ENSG00000119715.10|estrogen-related receptor beta
hg19_v2_chr17_+_9728828_9728868	1.24085	SOX3_SOX2	ENST00000262441.5|GLP2R|ENSG00000065325.8|glucagon-like peptide 2 receptor
hg19_v2_chr21_-_40685536_40685591	1.23758	SOX3_SOX2	ENST00000341322.4|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr12_+_69979210_69979252	1.23538	SOX3_SOX2	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr3_+_39509070_39509101	1.23354	SOX3_SOX2	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr4_+_156680153_156680242	1.23212	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr10_-_25241499_25241541	1.2277	SOX3_SOX2	ENST00000376378.1|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000376376.3|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000320152.6|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1
hg19_v2_chr22_-_28197486_28197544	1.22024	SOX3_SOX2	ENST00000302326.4|MN1|ENSG00000169184.5|meningioma (disrupted in balanced translocation) 1
hg19_v2_chr8_+_124194875_124194921	1.21579	SOX3_SOX2	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr11_+_65408273_65408341	1.21037	SOX3_SOX2	ENST00000394227.3|SIPA1|ENSG00000213445.4|signal-induced proliferation-associated 1
hg19_v2_chr4_-_40859132_40859209	1.20983	SOX3_SOX2	ENST00000543538.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000502841.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000504305.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000513516.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000510670.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2
hg19_v2_chr12_-_8815299_8815331	1.20062	SOX3_SOX2	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr2_-_165424973_165425010	1.19925	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr8_+_124194752_124194835	1.19386	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr8_-_95449155_95449188	1.18027	SOX3_SOX2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr12_+_69979446_69979471	1.17764	SOX3_SOX2	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr3_+_39509163_39509180	1.17512	SOX3_SOX2	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr3_+_149689066_149689066	1.17348	SOX3_SOX2	ENST00000593416.1|AC117395.1|ENSG00000268175.1|LOC646903 protein; Uncharacterized protein
hg19_v2_chr14_+_75746781_75746896	1.17295	SOX3_SOX2	ENST00000555347.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr16_-_46864955_46864980	1.17285	SOX3_SOX2	ENST00000565112.1|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr11_+_57365150_57365276	1.15952	SOX3_SOX2	ENST00000457869.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000340687.6|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378323.4|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378324.2|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000403558.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
hg19_v2_chrX_-_132095419_132095426	1.15872	SOX3_SOX2	ENST00000370836.2|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2 	ENST00000521489.1|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2
hg19_v2_chr14_-_73493825_73493920	1.15118	SOX3_SOX2	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr13_-_30881134_30881181	1.15059	SOX3_SOX2	ENST00000380617.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1 	ENST00000441394.1|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr18_+_29027696_29027774	1.14913	SOX3_SOX2	ENST00000257189.4|DSG3|ENSG00000134757.4|desmoglein 3
hg19_v2_chr17_+_75447326_75447457	1.14886	SOX3_SOX2	ENST00000591088.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr17_+_65373531_65373577	1.14393	SOX3_SOX2	ENST00000580974.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chrX_-_24665208_24665275	1.14386	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr1_-_8086343_8086378	1.14016	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chrX_-_128977364_128977436	1.13975	SOX3_SOX2	ENST00000371064.3|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr8_-_60031762_60031803	1.13796	SOX3_SOX2	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr12_-_82152444_82152475	1.13503	SOX3_SOX2	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr6_-_127840453_127840507	1.12953	SOX3_SOX2	ENST00000556132.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr2_-_235405679_235405739	1.1266	SOX3_SOX2	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr11_+_46402482_46402502	1.11954	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr2_-_37899323_37899374	1.11855	SOX3_SOX2	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr12_+_69979113_69979155	1.11673	SOX3_SOX2	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr12_-_54779511_54779577	1.11621	SOX3_SOX2	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr9_-_136344197_136344232	1.11459	SOX3_SOX2	ENST00000414172.1|SLC2A6|ENSG00000160326.9|solute carrier family 2 (facilitated glucose transporter), member 6 	ENST00000371897.4|SLC2A6|ENSG00000160326.9|solute carrier family 2 (facilitated glucose transporter), member 6
hg19_v2_chr10_-_30024716_30024739	1.10379	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr11_+_46402583_46402669	1.09705	SOX3_SOX2	ENST00000359803.3|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr7_+_77166592_77166653	1.09557	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chrX_-_153599578_153599656	1.09393	SOX3_SOX2	ENST00000360319.4|FLNA|ENSG00000196924.10|filamin A, alpha 	ENST00000344736.4|FLNA|ENSG00000196924.10|filamin A, alpha
hg19_v2_chr15_+_80696666_80696700	1.092	SOX3_SOX2	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr11_+_46402744_46402777	1.08836	SOX3_SOX2	ENST00000533952.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr15_-_50647370_50647405	1.08285	SOX3_SOX2	ENST00000558970.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000396464.3|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000560825.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chrX_-_15683147_15683159	1.08171	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr19_+_41256764_41256825	1.07847	SOX3_SOX2	ENST00000243563.3|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000601253.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000597353.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000599362.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr8_-_8243968_8244008	1.07386	SOX3_SOX2	ENST00000520004.1|SGK223|ENSG00000182319.5|Tyrosine-protein kinase SgK223
hg19_v2_chr7_+_134212312_134212344	1.07351	SOX3_SOX2	ENST00000359579.4|AKR1B10|ENSG00000198074.5|aldo-keto reductase family 1, member B10 (aldose reductase)
hg19_v2_chr2_+_228337079_228337092	1.06944	SOX3_SOX2	ENST00000409315.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000373671.3|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000409171.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr1_-_155880672_155880715	1.05992	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr5_-_39425290_39425336	1.05693	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr1_-_110283660_110283660	1.05531	SOX3_SOX2	ENST00000361066.2|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr11_+_125496400_125496464	1.05408	SOX3_SOX2	ENST00000524737.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr22_+_27053190_27053336	1.046	SOX3_SOX2	ENST00000439738.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000422403.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000436238.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000425476.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000455640.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000451141.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000452429.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000423278.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr1_+_87012753_87012767	1.04551	SOX3_SOX2	ENST00000370563.3|CLCA4|ENSG00000016602.8|chloride channel accessory 4
hg19_v2_chr15_+_22382382_22382382	1.04541	SOX3_SOX2	ENST00000328795.4|OR4N4|ENSG00000183706.4|olfactory receptor, family 4, subfamily N, member 4
hg19_v2_chr7_-_107443652_107443675	1.04008	SOX3_SOX2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr2_+_105050794_105050854	1.03533	SOX3_SOX2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr5_-_137514617_137514686	1.02537	SOX3_SOX2	ENST00000254900.5|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr7_-_24797032_24797162	1.02049	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr1_-_154155675_154155709	1.01453	SOX3_SOX2	ENST00000330188.9|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341485.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr19_+_47105309_47105329	1.0118	SOX3_SOX2	ENST00000599839.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000596362.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr18_+_55888767_55888809	1.0104	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr17_-_49124230_49124248	1.00924	SOX3_SOX2	ENST00000510283.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000510855.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr12_+_15475462_15475487	1.00019	SOX3_SOX2	ENST00000543886.1|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000348962.2|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O
hg19_v2_chr7_+_107224364_107224391	1.00019	SOX3_SOX2	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr3_+_19189946_19190079	0.998146	SOX3_SOX2	ENST00000328405.2|KCNH8|ENSG00000183960.4|potassium voltage-gated channel, subfamily H (eag-related), member 8
hg19_v2_chr2_+_27719697_27719723	0.993203	SOX3_SOX2	ENST00000264717.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator 	ENST00000424318.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator
hg19_v2_chr5_-_39425222_39425283	0.989809	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr6_-_75915757_75915775	0.989565	SOX3_SOX2	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr11_+_35198118_35198209	0.989136	SOX3_SOX2	ENST00000525211.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526000.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000279452.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000527889.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr5_-_146833222_146833261	0.988454	SOX3_SOX2	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr7_-_5569588_5569627	0.981777	SOX3_SOX2	ENST00000417101.1|ACTB|ENSG00000075624.9|actin, beta
hg19_v2_chr1_-_226496898_226496955	0.980735	SOX3_SOX2	ENST00000481685.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr1_-_161014731_161014788	0.978781	SOX3_SOX2	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr4_+_95128996_95129056	0.973136	SOX3_SOX2	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr3_-_141747439_141747452	0.971173	SOX3_SOX2	ENST00000467667.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr19_+_41257084_41257125	0.971139	SOX3_SOX2	ENST00000601393.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr5_-_39425068_39425098	0.970762	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr6_-_41863098_41863120	0.970473	SOX3_SOX2	ENST00000373006.1|USP49|ENSG00000164663.9|ubiquitin specific peptidase 49
hg19_v2_chr6_-_35656685_35656701	0.969625	SOX3_SOX2	ENST00000539068.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000540787.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr7_+_139528952_139529038	0.967923	SOX3_SOX2	ENST00000416849.2|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet) 	ENST00000436047.2|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet) 	ENST00000414508.2|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet) 	ENST00000448866.1|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet)
hg19_v2_chr11_-_107729887_107729927	0.967724	SOX3_SOX2	ENST00000525815.1|SLC35F2|ENSG00000110660.10|solute carrier family 35, member F2
hg19_v2_chr7_-_150780487_150780597	0.961556	SOX3_SOX2	ENST00000482202.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr3_+_189349162_189349305	0.953906	SOX3_SOX2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr5_+_135364584_135364691	0.953484	SOX3_SOX2	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr10_+_123923105_123923160	0.950477	SOX3_SOX2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr12_-_58146128_58146304	0.947546	SOX3_SOX2	ENST00000551800.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4 	ENST00000549606.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4 	ENST00000257904.6|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4
hg19_v2_chr17_+_33914276_33914386	0.946736	SOX3_SOX2	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr2_+_210517895_210518021	0.94292	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr18_-_31802056_31802056	0.937103	SOX3_SOX2	ENST00000538587.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr15_-_50647274_50647336	0.937035	SOX3_SOX2	ENST00000543881.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr3_-_47950745_47950757	0.933488	SOX3_SOX2	ENST00000429422.1|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr11_+_76494253_76494317	0.931296	SOX3_SOX2	ENST00000333090.4|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr20_+_48884002_48884088	0.929908	SOX3_SOX2	ENST00000425497.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3	ENST00000445003.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3
hg19_v2_chr4_-_139163491_139163510	0.925764	SOX3_SOX2	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr8_-_30515693_30515776	0.924513	SOX3_SOX2	ENST00000355904.4|GTF2E2|ENSG00000197265.4|general transcription factor IIE, polypeptide 2, beta 34kDa
hg19_v2_chr11_+_35198243_35198260	0.922563	SOX3_SOX2	ENST00000528455.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr19_-_55660561_55660722	0.919705	SOX3_SOX2	ENST00000587758.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000356783.5|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000291901.8|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588426.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588147.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000536926.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588981.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow)
hg19_v2_chr15_+_78730622_78730646	0.917771	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr1_-_214638146_214638146	0.914658	SOX3_SOX2	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr10_+_6244829_6244904	0.914374	SOX3_SOX2	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr14_-_51027838_51027851	0.898982	SOX3_SOX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr1_+_65886326_65886406	0.89745	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr6_-_35656712_35656723	0.895305	SOX3_SOX2	ENST00000357266.4|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000542713.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr1_-_11751529_11751536	0.894545	SOX3_SOX2	ENST00000376672.1|MAD2L2|ENSG00000116670.10|MAD2 mitotic arrest deficient-like 2 (yeast)
hg19_v2_chr14_+_103589789_103589804	0.891338	SOX3_SOX2	ENST00000558056.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2 	ENST00000560869.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr2_-_169769787_169769861	0.890234	SOX3_SOX2	ENST00000451987.1|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr3_-_128690173_128690173	0.882396	SOX3_SOX2	ENST00000508239.1|RP11-723O4.6|ENSG00000187695.6|Uncharacterized protein FLJ43738
hg19_v2_chr14_-_60097297_60097403	0.87547	SOX3_SOX2	ENST00000395090.1|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr2_+_9346892_9346948	0.875183	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr16_+_27078219_27078229	0.871571	SOX3_SOX2	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr7_-_22233442_22233527	0.8714	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr11_-_6341724_6341762	0.869565	SOX3_SOX2	ENST00000530979.1|PRKCDBP|ENSG00000170955.9|protein kinase C, delta binding protein
hg19_v2_chr13_-_30881621_30881675	0.869544	SOX3_SOX2	ENST00000380615.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr17_+_33914460_33914536	0.864151	SOX3_SOX2	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr4_+_95128748_95128794	0.864026	SOX3_SOX2	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr11_-_47207390_47207432	0.85954	SOX3_SOX2	ENST00000539589.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3 	ENST00000528462.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3
hg19_v2_chr12_-_58146048_58146118	0.850129	SOX3_SOX2	ENST00000547281.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4 	ENST00000546489.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4 	ENST00000552388.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4 	ENST00000540325.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4 	ENST00000312990.6|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4
hg19_v2_chr2_-_2334888_2335053	0.849511	SOX3_SOX2	ENST00000428368.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like 	ENST00000399161.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like
hg19_v2_chr7_+_23145884_23145917	0.847818	SOX3_SOX2	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr7_+_2671568_2671606	0.846945	SOX3_SOX2	ENST00000258796.7|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr12_-_11508520_11508686	0.845524	SOX3_SOX2	ENST00000545626.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1 	ENST00000500254.2|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr12_-_108154925_108154945	0.839836	SOX3_SOX2	ENST00000228437.5|PRDM4|ENSG00000110851.7|PR domain containing 4
hg19_v2_chr11_-_64546202_64546258	0.839124	SOX3_SOX2	ENST00000377390.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000227503.9|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000377394.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000422298.2|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000334944.5|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr20_+_20348740_20348765	0.836996	SOX3_SOX2	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chr17_-_53046058_53046146	0.835581	SOX3_SOX2	ENST00000571584.1|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast) 	ENST00000299335.3|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast)
hg19_v2_chr18_+_3447572_3447607	0.832499	SOX3_SOX2	ENST00000548489.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr1_-_11751665_11751707	0.829976	SOX3_SOX2	ENST00000376667.3|MAD2L2|ENSG00000116670.10|MAD2 mitotic arrest deficient-like 2 (yeast) 	ENST00000235310.3|MAD2L2|ENSG00000116670.10|MAD2 mitotic arrest deficient-like 2 (yeast)
hg19_v2_chr12_+_93963590_93963628	0.828706	SOX3_SOX2	ENST00000340600.2|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr6_-_11232891_11232915	0.828678	SOX3_SOX2	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr12_-_105478339_105478361	0.828283	SOX3_SOX2	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr17_-_76921459_76921478	0.82629	SOX3_SOX2	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr12_-_12674032_12674059	0.826273	SOX3_SOX2	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr17_-_72358001_72358085	0.825171	SOX3_SOX2	ENST00000375366.3|BTBD17|ENSG00000204347.3|BTB (POZ) domain containing 17
hg19_v2_chr2_-_166060571_166060582	0.824495	SOX3_SOX2	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr17_-_76123101_76123168	0.824035	SOX3_SOX2	ENST00000392467.3|TMC6|ENSG00000141524.11|transmembrane channel-like 6
hg19_v2_chr12_-_129308487_129308588	0.818917	SOX3_SOX2	ENST00000266771.5|SLC15A4|ENSG00000139370.6|solute carrier family 15 (oligopeptide transporter), member 4
hg19_v2_chr2_+_70142232_70142320	0.818873	SOX3_SOX2	ENST00000540449.1|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr11_-_61582579_61582763	0.816633	SOX3_SOX2	ENST00000539419.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545245.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545405.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000542506.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1
hg19_v2_chr20_+_44036620_44036658	0.813343	SOX3_SOX2	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr13_-_110959478_110959511	0.812898	SOX3_SOX2	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chr1_+_201857798_201857836	0.812602	SOX3_SOX2	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr4_-_52883786_52883786	0.812185	SOX3_SOX2	ENST00000343457.3|LRRC66|ENSG00000188993.3|leucine rich repeat containing 66
hg19_v2_chr2_+_11679963_11679986	0.811364	SOX3_SOX2	ENST00000263834.5|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1
hg19_v2_chr6_+_46620676_46620696	0.80979	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr3_+_26664291_26664329	0.808546	SOX3_SOX2	ENST00000396641.2|LRRC3B|ENSG00000179796.7|leucine rich repeat containing 3B
hg19_v2_chr7_-_142247606_142247628	0.803889	SOX3_SOX2	ENST00000390361.3|TRBV7-3|ENSG00000211714.3|T cell receptor beta variable 7-3
hg19_v2_chr12_+_1099675_1099751	0.803032	SOX3_SOX2	ENST00000545318.2|ERC1|ENSG00000082805.15|ELKS/RAB6-interacting/CAST family member 1
hg19_v2_chr10_+_18948311_18948417	0.800083	SOX3_SOX2	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr17_-_39274606_39274626	0.799957	SOX3_SOX2	ENST00000391413.2|KRTAP4-11|ENSG00000212721.2|keratin associated protein 4-11
hg19_v2_chr11_+_93861993_93862102	0.79965	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr7_-_99774945_99775026	0.797474	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr16_-_89007491_89007608	0.796676	SOX3_SOX2	ENST00000327483.5|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000564416.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr10_+_102106829_102106881	0.794524	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr1_-_230513367_230513391	0.794155	SOX3_SOX2	ENST00000321327.2|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5 	ENST00000525115.1|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5
hg19_v2_chr6_+_37787704_37787718	0.793745	SOX3_SOX2	ENST00000474522.1|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr14_-_22005062_22005082	0.791165	SOX3_SOX2	ENST00000317492.5|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr11_-_14358620_14358712	0.791098	SOX3_SOX2	ENST00000531421.1|RRAS2|ENSG00000133818.8|related RAS viral (r-ras) oncogene homolog 2
hg19_v2_chr12_-_103889731_103889754	0.790019	SOX3_SOX2	ENST00000552578.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548048.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000315192.8|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548883.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000378113.2|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42
hg19_v2_chr1_-_93645818_93645918	0.789639	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr1_-_75198940_75199092	0.789348	SOX3_SOX2	ENST00000417775.1|CRYZ|ENSG00000116791.9|crystallin, zeta (quinone reductase)
hg19_v2_chr1_+_68150744_68150890	0.78815	SOX3_SOX2	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr7_+_2671663_2671790	0.785861	SOX3_SOX2	ENST00000407643.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr2_+_177015950_177015950	0.785169	SOX3_SOX2	ENST00000306324.3|HOXD4|ENSG00000170166.5|homeobox D4
hg19_v2_chr3_-_87040233_87040257	0.781024	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr17_+_19030782_19030907	0.779301	SOX3_SOX2	ENST00000344415.4|GRAPL|ENSG00000189152.6|GRB2-related adaptor protein-like 	ENST00000577213.1|GRAPL|ENSG00000189152.6|GRB2-related adaptor protein-like
hg19_v2_chr5_-_159739532_159739607	0.779258	SOX3_SOX2	ENST00000520748.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000393977.3|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000257536.7|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr17_-_41623691_41623715	0.778739	SOX3_SOX2	ENST00000545954.1|ETV4|ENSG00000175832.8|ets variant 4
hg19_v2_chr11_-_2162468_2162497	0.777236	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr17_-_17184605_17184622	0.776725	SOX3_SOX2	ENST00000268717.5|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr11_-_18813353_18813389	0.775832	SOX3_SOX2	ENST00000358540.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396171.4|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396167.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
hg19_v2_chr2_+_27070964_27071027	0.773507	SOX3_SOX2	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr3_+_52719936_52720057	0.773347	SOX3_SOX2	ENST00000418458.1|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar) 	ENST00000394799.2|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar)
hg19_v2_chr7_-_142120321_142120369	0.770286	SOX3_SOX2	ENST00000390377.1|TRBV7-7|ENSG00000253291.1|T cell receptor beta variable 7-7
hg19_v2_chr17_+_15603447_15603447	0.770063	SOX3_SOX2	ENST00000395893.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr1_-_155177677_155177739	0.766546	SOX3_SOX2	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr5_-_150521192_150521229	0.766217	SOX3_SOX2	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chrX_+_153686614_153686629	0.762182	SOX3_SOX2	ENST00000369682.3|PLXNA3|ENSG00000130827.5|plexin A3
hg19_v2_chr3_+_132757215_132757261	0.759845	SOX3_SOX2	ENST00000321871.6|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000393130.3|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000514894.1|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000512662.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr13_-_33760216_33760234	0.758561	SOX3_SOX2	ENST00000255486.4|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr12_-_8803128_8803164	0.758212	SOX3_SOX2	ENST00000543467.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr2_-_166060552_166060566	0.755975	SOX3_SOX2	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr9_-_95298314_95298340	0.754288	SOX3_SOX2	ENST00000344604.5|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific 	ENST00000375540.1|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr14_-_24610779_24610834	0.754105	SOX3_SOX2	ENST00000560403.1|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9 	ENST00000419198.2|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9 	ENST00000216799.4|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9
hg19_v2_chr4_-_99578789_99578843	0.752405	SOX3_SOX2	ENST00000511651.1|TSPAN5|ENSG00000168785.3|tetraspanin 5 	ENST00000505184.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr2_-_208031943_208031991	0.750675	SOX3_SOX2	ENST00000421199.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous) 	ENST00000457962.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr13_+_113030625_113030634	0.750314	SOX3_SOX2	ENST00000283550.3|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr17_+_57297807_57297923	0.750283	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr1_-_168106536_168106821	0.749181	SOX3_SOX2	ENST00000537209.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000361697.2|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000546300.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000367835.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161
hg19_v2_chr15_-_65398647_65398697	0.748826	SOX3_SOX2	ENST00000502113.2|UBAP1L|ENSG00000246922.4|ubiquitin associated protein 1-like
hg19_v2_chr22_+_37447771_37447916	0.748006	SOX3_SOX2	ENST00000402077.3|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17 	ENST00000403888.3|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17 	ENST00000456470.1|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17
hg19_v2_chr18_-_13726510_13726662	0.747789	SOX3_SOX2	ENST00000322247.3|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000592976.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000402563.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000591269.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A
hg19_v2_chr7_-_121944491_121944705	0.747449	SOX3_SOX2	ENST00000331178.4|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000427185.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000442488.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1
hg19_v2_chr19_-_14785622_14785667	0.746841	SOX3_SOX2	ENST00000443157.2|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr6_-_42419649_42419789	0.745787	SOX3_SOX2	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr22_-_38713394_38713416	0.745331	SOX3_SOX2	ENST00000396832.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000413574.2|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr4_-_48908805_48908821	0.744844	SOX3_SOX2	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr12_-_109915098_109915138	0.74332	SOX3_SOX2	ENST00000542858.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000542262.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000424763.2|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10
hg19_v2_chrX_+_38420783_38420805	0.743152	SOX3_SOX2	ENST00000422612.2|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000286824.6|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000545599.1|TSPAN7|ENSG00000156298.8|tetraspanin 7
hg19_v2_chr4_+_78078304_78078406	0.742809	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr13_-_103451307_103451380	0.742033	SOX3_SOX2	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr1_+_153004800_153004822	0.741968	SOX3_SOX2	ENST00000392661.3|SPRR1B|ENSG00000169469.7|small proline-rich protein 1B
hg19_v2_chr1_+_200708671_200708744	0.738983	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr1_-_155947951_155947974	0.738513	SOX3_SOX2	ENST00000313695.7|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2 	ENST00000497907.1|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr8_+_59323823_59323947	0.735523	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr4_-_99578776_99578786	0.735122	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr4_-_157892055_157892128	0.730458	SOX3_SOX2	ENST00000422544.2|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr16_+_11762270_11762344	0.728286	SOX3_SOX2	ENST00000329565.5|SNN|ENSG00000184602.5|stannin
hg19_v2_chr19_-_14785698_14785810	0.727138	SOX3_SOX2	ENST00000344373.4|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3 	ENST00000595472.1|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr21_-_31869451_31869451	0.726967	SOX3_SOX2	ENST00000334058.2|KRTAP19-4|ENSG00000186967.6|keratin associated protein 19-4
hg19_v2_chr11_-_117747434_117747453	0.726121	SOX3_SOX2	ENST00000529335.2|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000530956.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000260282.4|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6
hg19_v2_chr8_+_95653427_95653460	0.725696	SOX3_SOX2	ENST00000454170.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr1_-_6546001_6546019	0.724483	SOX3_SOX2	ENST00000400913.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr8_-_8751068_8751158	0.721256	SOX3_SOX2	ENST00000276282.6|MFHAS1|ENSG00000147324.6|malignant fibrous histiocytoma amplified sequence 1
hg19_v2_chr21_-_27423339_27423352	0.717339	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr19_-_42806842_42806880	0.714018	SOX3_SOX2	ENST00000596265.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr10_+_11206925_11206993	0.707257	SOX3_SOX2	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr19_-_51141196_51141302	0.706708	SOX3_SOX2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr11_-_124311054_124311054	0.705342	SOX3_SOX2	ENST00000328064.2|OR8B8|ENSG00000197125.2|olfactory receptor, family 8, subfamily B, member 8
hg19_v2_chr6_+_30848557_30848645	0.704852	SOX3_SOX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr4_+_95129061_95129198	0.702146	SOX3_SOX2	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr2_+_220492116_220492137	0.699662	SOX3_SOX2	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr9_+_18474204_18474231	0.698906	SOX3_SOX2	ENST00000276935.6|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chr18_-_24445664_24445679	0.698739	SOX3_SOX2	ENST00000578776.1|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr19_-_14785674_14785685	0.696007	SOX3_SOX2	ENST00000253673.5|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr12_+_22778116_22778139	0.692547	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr1_-_31712401_31712401	0.691579	SOX3_SOX2	ENST00000373736.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr19_-_40324255_40324296	0.68984	SOX3_SOX2	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr5_-_65017921_65017968	0.68837	SOX3_SOX2	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr17_+_80416050_80416235	0.684742	SOX3_SOX2	ENST00000579198.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000390006.4|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000580296.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr15_+_80215113_80215113	0.684401	SOX3_SOX2	ENST00000560255.1|C15orf37|ENSG00000259642.1|chromosome 15 open reading frame 37
hg19_v2_chr17_-_2966901_2966901	0.683673	SOX3_SOX2	ENST00000575751.1|OR1D5|ENSG00000262628.1|olfactory receptor, family 1, subfamily D, member 5
hg19_v2_chr14_-_71276211_71276255	0.683559	SOX3_SOX2	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr2_+_208576259_208576278	0.683504	SOX3_SOX2	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr3_+_140947563_140947577	0.683199	SOX3_SOX2	ENST00000505013.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr3_+_189507523_189507590	0.683109	SOX3_SOX2	ENST00000437221.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392463.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392461.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000449992.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000456148.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr10_+_11047259_11047351	0.682645	SOX3_SOX2	ENST00000379261.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000416382.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr3_+_47844615_47844682	0.680919	SOX3_SOX2	ENST00000348968.4|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr11_+_45943169_45943198	0.679979	SOX3_SOX2	ENST00000529052.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B 	ENST00000531526.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B
hg19_v2_chr15_+_81293254_81293304	0.677978	SOX3_SOX2	ENST00000267984.2|MESDC1|ENSG00000140406.2|mesoderm development candidate 1
hg19_v2_chrX_+_16737718_16737778	0.676952	SOX3_SOX2	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr16_+_3068393_3068446	0.676577	SOX3_SOX2	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chrX_-_15872914_15873054	0.675582	SOX3_SOX2	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr8_+_80523962_80523991	0.675428	SOX3_SOX2	ENST00000518491.1|STMN2|ENSG00000104435.9|stathmin-like 2
hg19_v2_chr2_+_113816215_113816244	0.675386	SOX3_SOX2	ENST00000346807.3|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr12_-_99288536_99288677	0.675009	SOX3_SOX2	ENST00000549797.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000333732.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000341752.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr2_+_113735575_113735606	0.674859	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr14_+_22962898_22962925	0.674223	SOX3_SOX2	ENST00000390492.1|TRAJ45|ENSG00000211844.1|T cell receptor alpha joining 45
hg19_v2_chr11_-_2906979_2907111	0.671653	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr3_-_197024394_197024740	0.669811	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr8_+_66955648_66955712	0.667992	SOX3_SOX2	ENST00000522619.1|DNAJC5B|ENSG00000147570.5|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
hg19_v2_chr19_-_44285401_44285446	0.667485	SOX3_SOX2	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr8_+_31497271_31497285	0.665524	SOX3_SOX2	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr6_+_126661253_126661356	0.664412	SOX3_SOX2	ENST00000368326.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368325.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368328.4|CENPW|ENSG00000203760.4|centromere protein W
hg19_v2_chr1_-_117210290_117210376	0.66366	SOX3_SOX2	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chr16_-_67217844_67217943	0.662801	SOX3_SOX2	ENST00000563902.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000561621.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000290881.7|KIAA0895L|ENSG00000196123.8|KIAA0895-like
hg19_v2_chr4_-_48908737_48908799	0.660308	SOX3_SOX2	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr5_+_72112470_72112533	0.657603	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr7_-_111846435_111846471	0.656835	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr10_+_101419187_101419313	0.654431	SOX3_SOX2	ENST00000370489.4|ENTPD7|ENSG00000198018.6|ectonucleoside triphosphate diphosphohydrolase 7
hg19_v2_chr2_-_47572105_47572151	0.654398	SOX3_SOX2	ENST00000419035.1|AC073283.4|ENSG00000234690.2|AC073283.4	ENST00000448713.1|AC073283.4|ENSG00000234690.2|AC073283.4	ENST00000450550.1|AC073283.4|ENSG00000234690.2|AC073283.4	ENST00000413185.2|AC073283.4|ENSG00000234690.2|AC073283.4
hg19_v2_chr20_+_49126881_49126936	0.649415	SOX3_SOX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr6_+_46620705_46620732	0.649097	SOX3_SOX2	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr22_-_39151463_39151639	0.647427	SOX3_SOX2	ENST00000405510.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000433561.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr10_-_33246722_33246830	0.642118	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr3_+_100211412_100211504	0.640044	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr15_+_80215477_80215546	0.638659	SOX3_SOX2	ENST00000542003.1|C15ORF37|ENSG00000257028.1|C15orf37 protein; Uncharacterized protein
hg19_v2_chr20_-_43150601_43150751	0.63757	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr5_+_109025067_109025146	0.636441	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr5_+_15500280_15500312	0.635927	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr5_+_140797296_140797427	0.634862	SOX3_SOX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr5_+_126112794_126112928	0.633253	SOX3_SOX2	ENST00000261366.5|LMNB1|ENSG00000113368.7|lamin B1 	ENST00000395354.1|LMNB1|ENSG00000113368.7|lamin B1
hg19_v2_chr11_-_125550764_125550773	0.633201	SOX3_SOX2	ENST00000527795.1|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1
hg19_v2_chrX_+_69642881_69642991	0.631617	SOX3_SOX2	ENST00000453994.2|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000536730.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000538649.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000374382.3|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2
hg19_v2_chr4_+_54243917_54244006	0.630944	SOX3_SOX2	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr12_-_11548496_11548505	0.62704	SOX3_SOX2	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr11_+_22359562_22359643	0.627034	SOX3_SOX2	ENST00000263160.3|SLC17A6|ENSG00000091664.7|solute carrier family 17 (vesicular glutamate transporter), member 6
hg19_v2_chr3_-_123339418_123339473	0.626912	SOX3_SOX2	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr11_-_133715394_133715433	0.625978	SOX3_SOX2	ENST00000299140.3|SPATA19|ENSG00000166118.3|spermatogenesis associated 19 	ENST00000532889.1|SPATA19|ENSG00000166118.3|spermatogenesis associated 19
hg19_v2_chr19_-_42806919_42806958	0.624806	SOX3_SOX2	ENST00000595530.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 	ENST00000538771.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 	ENST00000601865.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr5_+_74062806_74062840	0.624795	SOX3_SOX2	ENST00000296802.5|NSA2|ENSG00000164346.5|NSA2 ribosome biogenesis homolog (S. cerevisiae)
hg19_v2_chr3_-_71353892_71353928	0.623534	SOX3_SOX2	ENST00000484350.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr2_+_75061108_75061265	0.622456	SOX3_SOX2	ENST00000290573.2|HK2|ENSG00000159399.5|hexokinase 2
hg19_v2_chr6_+_30875955_30876012	0.622001	SOX3_SOX2	ENST00000259895.4|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa 	ENST00000539324.1|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa 	ENST00000376316.2|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa 	ENST00000453897.2|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa
hg19_v2_chr4_+_128702969_128702984	0.621803	SOX3_SOX2	ENST00000508776.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000439123.2|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr1_+_153232160_153232176	0.62164	SOX3_SOX2	ENST00000368742.3|LOR|ENSG00000203782.5|loricrin
hg19_v2_chr2_+_192109911_192110170	0.621496	SOX3_SOX2	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr1_-_228603694_228603730	0.615072	SOX3_SOX2	ENST00000366697.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr11_-_10829851_10829860	0.614666	SOX3_SOX2	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr11_+_46402297_46402306	0.612807	SOX3_SOX2	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr7_-_44229022_44229055	0.611853	SOX3_SOX2	ENST00000403799.3|GCK|ENSG00000106633.11|glucokinase (hexokinase 4)
hg19_v2_chr18_+_32455201_32455314	0.610619	SOX3_SOX2	ENST00000590831.2|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr15_-_34659349_34659479	0.608433	SOX3_SOX2	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr1_+_109419596_109419640	0.605292	SOX3_SOX2	ENST00000435987.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2 	ENST00000264126.3|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr19_+_39904168_39904468	0.603171	SOX3_SOX2	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr17_-_41623716_41623800	0.603145	SOX3_SOX2	ENST00000319349.5|ETV4|ENSG00000175832.8|ets variant 4
hg19_v2_chr6_-_112194484_112194662	0.601986	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr14_+_96343100_96343115	0.600821	SOX3_SOX2	ENST00000503525.2|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr3_-_149095652_149095652	0.599775	SOX3_SOX2	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr1_-_154150651_154150691	0.598633	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr17_+_51900239_51900312	0.59842	SOX3_SOX2	ENST00000268919.4|KIF2B|ENSG00000141200.6|kinesin family member 2B
hg19_v2_chr17_-_49198095_49198119	0.592054	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr3_-_123339343_123339401	0.591266	SOX3_SOX2	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr2_+_192110199_192110254	0.590342	SOX3_SOX2	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr10_+_123922941_123923023	0.590179	SOX3_SOX2	ENST00000360561.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr1_+_182808474_182808504	0.58992	SOX3_SOX2	ENST00000367549.3|DHX9|ENSG00000135829.12|DEAH (Asp-Glu-Ala-His) box helicase 9
hg19_v2_chr5_-_171881362_171881397	0.588173	SOX3_SOX2	ENST00000519643.1|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr16_+_8814563_8814603	0.587769	SOX3_SOX2	ENST00000425191.2|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase 	ENST00000569156.1|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase
hg19_v2_chr3_-_27525826_27525840	0.587044	SOX3_SOX2	ENST00000454389.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000440156.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000437179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000446700.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000455077.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000435667.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000388777.4|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000425128.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr11_+_125496124_125496344	0.586987	SOX3_SOX2	ENST00000533778.2|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000534070.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr12_+_49761147_49761167	0.58493	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr17_-_38210644_38210675	0.582923	SOX3_SOX2	ENST00000394128.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000394127.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000356271.3|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000535071.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580885.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000543759.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000537674.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580517.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000578161.1|MED24|ENSG00000008838.13|mediator complex subunit 24
hg19_v2_chr4_-_22444733_22444767	0.582477	SOX3_SOX2	ENST00000508133.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr9_+_103189536_103189601	0.581144	SOX3_SOX2	ENST00000374885.1|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr8_+_95653302_95653364	0.580551	SOX3_SOX2	ENST00000423620.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1 	ENST00000433389.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr1_-_221915418_221915518	0.580535	SOX3_SOX2	ENST00000323825.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10 	ENST00000366899.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10
hg19_v2_chr11_+_44117741_44117798	0.580357	SOX3_SOX2	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr17_-_40337470_40337470	0.578794	SOX3_SOX2	ENST00000293330.1|HCRT|ENSG00000161610.1|hypocretin (orexin) neuropeptide precursor
hg19_v2_chr7_-_99698338_99698492	0.578564	SOX3_SOX2	ENST00000354230.3|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7 	ENST00000425308.1|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7
hg19_v2_chr12_+_50898881_50898907	0.577872	SOX3_SOX2	ENST00000301180.5|DIP2B|ENSG00000066084.8|DIP2 disco-interacting protein 2 homolog B (Drosophila)
hg19_v2_chr1_-_200379129_200379174	0.576936	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr3_+_159557637_159557650	0.573438	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr3_+_189507432_189507459	0.573334	SOX3_SOX2	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr21_-_31859755_31859755	0.573262	SOX3_SOX2	ENST00000334055.3|KRTAP19-2|ENSG00000186965.3|keratin associated protein 19-2
hg19_v2_chr20_-_25566153_25566211	0.573109	SOX3_SOX2	ENST00000278886.6|NINL|ENSG00000101004.10|ninein-like 	ENST00000422516.1|NINL|ENSG00000101004.10|ninein-like
hg19_v2_chr13_-_60737898_60737910	0.571852	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr1_+_42928945_42929025	0.571335	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chr5_-_16742330_16742344	0.569664	SOX3_SOX2	ENST00000505695.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000427430.2|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr5_-_176037105_176037165	0.568773	SOX3_SOX2	ENST00000303991.4|GPRIN1|ENSG00000169258.6|G protein regulated inducer of neurite outgrowth 1
hg19_v2_chr19_-_10341948_10341965	0.566809	SOX3_SOX2	ENST00000590320.1|S1PR2|ENSG00000267534.1|sphingosine-1-phosphate receptor 2 	ENST00000592342.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1 	ENST00000588952.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1
hg19_v2_chr5_+_172386517_172386523	0.565002	SOX3_SOX2	ENST00000519522.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr11_+_63753883_63753929	0.562804	SOX3_SOX2	ENST00000538426.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1 	ENST00000543004.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr7_-_30066233_30066332	0.562041	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr6_-_144385698_144385742	0.561988	SOX3_SOX2	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr17_-_17740325_17740349	0.561623	SOX3_SOX2	ENST00000338854.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr2_-_70475586_70475646	0.560805	SOX3_SOX2	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr6_+_126240442_126240459	0.559899	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr11_+_66624527_66624592	0.558778	SOX3_SOX2	ENST00000393952.3|LRFN4|ENSG00000173621.8|leucine rich repeat and fibronectin type III domain containing 4
hg19_v2_chr6_+_20403997_20404034	0.55623	SOX3_SOX2	ENST00000535432.1|E2F3|ENSG00000112242.10|E2F transcription factor 3
hg19_v2_chr19_+_45754505_45754577	0.556167	SOX3_SOX2	ENST00000262891.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4 	ENST00000300843.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4
hg19_v2_chr8_+_79428539_79428606	0.555359	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr17_-_61777459_61777502	0.555315	SOX3_SOX2	ENST00000578993.1|LIMD2|ENSG00000136490.4|LIM domain containing 2 	ENST00000583211.1|LIMD2|ENSG00000136490.4|LIM domain containing 2 	ENST00000259006.3|LIMD2|ENSG00000136490.4|LIM domain containing 2
hg19_v2_chrX_+_107288239_107288259	0.554811	SOX3_SOX2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr15_-_70388599_70388776	0.552294	SOX3_SOX2	ENST00000560996.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558201.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr9_-_35115836_35115893	0.550805	SOX3_SOX2	ENST00000378566.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000378554.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000322813.5|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr17_+_25621102_25621157	0.550542	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr12_+_53443680_53443858	0.549947	SOX3_SOX2	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr13_-_99667960_99668068	0.548584	SOX3_SOX2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr12_+_53443963_53443970	0.54715	SOX3_SOX2	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr20_+_62492566_62492566	0.546111	SOX3_SOX2	ENST00000369916.3|ABHD16B|ENSG00000183260.5|abhydrolase domain containing 16B
hg19_v2_chrX_+_107288197_107288212	0.544689	SOX3_SOX2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr14_+_21510385_21510440	0.540507	SOX3_SOX2	ENST00000298690.4|RNASE7|ENSG00000165799.4|ribonuclease, RNase A family, 7
hg19_v2_chr2_+_113816685_113816777	0.540046	SOX3_SOX2	ENST00000393200.2|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr15_+_76196234_76196466	0.539518	SOX3_SOX2	ENST00000540507.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000565036.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000569054.1|FBXO22|ENSG00000167196.9|F-box protein 22
hg19_v2_chr8_+_95653373_95653415	0.539488	SOX3_SOX2	ENST00000358397.5|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr17_-_49198216_49198236	0.539364	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr2_+_17721920_17721933	0.539204	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr4_+_75023816_75023890	0.538444	SOX3_SOX2	ENST00000395759.2|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000331145.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000359107.5|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000325278.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
hg19_v2_chr14_-_50999190_50999225	0.537763	SOX3_SOX2	ENST00000557390.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr8_+_145064215_145064232	0.537419	SOX3_SOX2	ENST00000313269.5|GRINA|ENSG00000178719.12|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
hg19_v2_chr11_+_61016805_61016805	0.535257	SOX3_SOX2	ENST00000541528.1|PGA5|ENSG00000256713.3|pepsinogen 5, group I (pepsinogen A)
hg19_v2_chr3_+_94657086_94657107	0.532582	SOX3_SOX2	ENST00000463200.1|LINC00879|ENSG00000239589.1|long intergenic non-protein coding RNA 879
hg19_v2_chr2_-_18770812_18770839	0.53242	SOX3_SOX2	ENST00000359846.2|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000532967.1|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000444297.2|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000304081.4|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000600945.1|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB
hg19_v2_chr4_+_2819883_2819948	0.531347	SOX3_SOX2	ENST00000511747.1|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2 	ENST00000503393.2|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2
hg19_v2_chrX_+_84499038_84499078	0.530983	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr17_+_8339189_8339285	0.529786	SOX3_SOX2	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr3_+_159570722_159570733	0.529656	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr22_+_20105012_20105085	0.529538	SOX3_SOX2	ENST00000331821.3|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000411892.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr6_-_111888474_111888563	0.528965	SOX3_SOX2	ENST00000368735.1|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr21_+_41239243_41239371	0.528817	SOX3_SOX2	ENST00000328619.5|PCP4|ENSG00000183036.6|Purkinje cell protein 4
hg19_v2_chr7_+_134551583_134551599	0.52873	SOX3_SOX2	ENST00000435928.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr19_+_45971246_45971265	0.52711	SOX3_SOX2	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr17_-_18585541_18585572	0.526662	SOX3_SOX2	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr16_-_20702578_20702578	0.526128	SOX3_SOX2	ENST00000307493.4|ACSM1|ENSG00000166743.5|acyl-CoA synthetase medium-chain family member 1 	ENST00000219151.4|ACSM1|ENSG00000166743.5|acyl-CoA synthetase medium-chain family member 1
hg19_v2_chr4_-_174320687_174320687	0.525158	SOX3_SOX2	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chrX_+_70503037_70503095	0.524616	SOX3_SOX2	ENST00000535149.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr19_+_16187816_16187838	0.522904	SOX3_SOX2	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr10_-_71332994_71332994	0.522408	SOX3_SOX2	ENST00000242462.4|NEUROG3|ENSG00000122859.4|neurogenin 3
hg19_v2_chrX_+_69488174_69488202	0.521707	SOX3_SOX2	ENST00000480877.2|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin) 	ENST00000307959.8|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr7_+_45039783_45039821	0.52112	SOX3_SOX2	ENST00000258781.6|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000541586.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000544363.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2
hg19_v2_chr2_+_27071045_27071157	0.520852	SOX3_SOX2	ENST00000401478.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr1_-_115300592_115300648	0.520312	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr7_+_77167376_77167395	0.520202	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr10_+_123923205_123923359	0.519281	SOX3_SOX2	ENST00000369004.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2 	ENST00000260733.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr11_+_63580855_63580889	0.51893	SOX3_SOX2	ENST00000294244.4|C11orf84|ENSG00000168005.4|chromosome 11 open reading frame 84
hg19_v2_chr1_-_226496772_226496884	0.518754	SOX3_SOX2	ENST00000359525.2|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans) 	ENST00000460719.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr19_+_532049_532065	0.51681	SOX3_SOX2	ENST00000606136.1|CDC34|ENSG00000099804.4|cell division cycle 34
hg19_v2_chr3_-_124839648_124839709	0.516278	SOX3_SOX2	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr4_-_143227088_143227105	0.515863	SOX3_SOX2	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr13_+_32605437_32605473	0.514412	SOX3_SOX2	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr2_-_14541060_14541087	0.514044	SOX3_SOX2	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr9_+_116263639_116263707	0.512851	SOX3_SOX2	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr18_+_3451584_3451606	0.512716	SOX3_SOX2	ENST00000551541.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr19_+_46010674_46010772	0.512688	SOX3_SOX2	ENST00000245932.6|VASP|ENSG00000125753.9|vasodilator-stimulated phosphoprotein 	ENST00000592139.1|VASP|ENSG00000125753.9|vasodilator-stimulated phosphoprotein 	ENST00000590603.1|VASP|ENSG00000125753.9|vasodilator-stimulated phosphoprotein
hg19_v2_chr15_-_59665062_59665099	0.51219	SOX3_SOX2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr3_-_48936272_48936426	0.511609	SOX3_SOX2	ENST00000544097.1|SLC25A20|ENSG00000178537.5|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 	ENST00000430379.1|SLC25A20|ENSG00000178537.5|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 	ENST00000319017.4|SLC25A20|ENSG00000178537.5|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20
hg19_v2_chr3_+_182983090_182983115	0.510564	SOX3_SOX2	ENST00000465010.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr15_-_20193370_20193370	0.510533	SOX3_SOX2	ENST00000558565.2|IGHV3OR15-7|ENSG00000259490.2|immunoglobulin heavy variable 3/OR15-7 (pseudogene)
hg19_v2_chr17_+_8339164_8339186	0.509783	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr19_+_34287751_34287807	0.509574	SOX3_SOX2	ENST00000590771.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000589786.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000284006.6|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000588881.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15
hg19_v2_chr7_-_32931623_32931756	0.506883	SOX3_SOX2	ENST00000452926.1|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr10_+_72972281_72972336	0.506583	SOX3_SOX2	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr19_-_42806723_42806795	0.506201	SOX3_SOX2	ENST00000262890.3|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr20_-_45985172_45985240	0.505687	SOX3_SOX2	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr1_-_155942086_155942145	0.504245	SOX3_SOX2	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr8_+_42873548_42873567	0.503699	SOX3_SOX2	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chr4_+_90033968_90033968	0.503459	SOX3_SOX2	ENST00000317005.2|TIGD2|ENSG00000180346.2|tigger transposable element derived 2
hg19_v2_chr4_+_150999418_150999433	0.503155	SOX3_SOX2	ENST00000296550.7|DCLK2|ENSG00000170390.10|doublecortin-like kinase 2
hg19_v2_chr11_-_2162162_2162246	0.502545	SOX3_SOX2	ENST00000381389.1|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr4_+_78079450_78079563	0.501545	SOX3_SOX2	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr20_+_42086525_42086568	0.500974	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr19_-_47249679_47249737	0.500706	SOX3_SOX2	ENST00000263280.6|STRN4|ENSG00000090372.10|striatin, calmodulin binding protein 4
hg19_v2_chr12_+_58120044_58120095	0.500318	SOX3_SOX2	ENST00000542466.2|AGAP2-AS1|ENSG00000255737.2|AGAP2 antisense RNA 1
hg19_v2_chr18_+_45778672_45778672	0.500264	SOX3_SOX2	ENST00000600091.1|AC091150.1|ENSG00000268960.1|HCG1818186; Uncharacterized protein
hg19_v2_chr6_-_108145499_108145532	0.50011	SOX3_SOX2	ENST00000369020.3|SCML4|ENSG00000146285.9|sex comb on midleg-like 4 (Drosophila) 	ENST00000369022.2|SCML4|ENSG00000146285.9|sex comb on midleg-like 4 (Drosophila)
hg19_v2_chr17_-_18950310_18950310	0.500094	SOX3_SOX2	ENST00000573099.1|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr8_-_6420565_6420659	0.500034	SOX3_SOX2	ENST00000338312.6|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr5_+_157158205_157158205	0.499671	SOX3_SOX2	ENST00000231198.7|THG1L|ENSG00000113272.9|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
hg19_v2_chr14_-_35182994_35183034	0.499363	SOX3_SOX2	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr3_-_194354010_194354164	0.498704	SOX3_SOX2	ENST00000381975.3|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000347147.4|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000473092.1|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000392432.2|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000273580.7|TMEM44|ENSG00000145014.13|transmembrane protein 44
hg19_v2_chr3_+_19988566_19988648	0.498372	SOX3_SOX2	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr3_-_10149907_10149944	0.498202	SOX3_SOX2	ENST00000450660.2|FANCD2OS|ENSG00000163705.8|FANCD2 opposite strand 	ENST00000524279.1|FANCD2OS|ENSG00000163705.8|FANCD2 opposite strand
hg19_v2_chr9_+_116263778_116263793	0.497826	SOX3_SOX2	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr3_+_155588375_155588512	0.49781	SOX3_SOX2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr9_-_132586378_132586433	0.497478	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr9_+_71789133_71789220	0.496241	SOX3_SOX2	ENST00000348208.4|TJP2|ENSG00000119139.12|tight junction protein 2 	ENST00000265384.7|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr7_-_134143841_134143924	0.495912	SOX3_SOX2	ENST00000285930.4|AKR1B1|ENSG00000085662.9|aldo-keto reductase family 1, member B1 (aldose reductase)
hg19_v2_chr12_+_49212514_49212692	0.49557	SOX3_SOX2	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr4_+_78079570_78079586	0.495062	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr8_-_95487272_95487330	0.494586	SOX3_SOX2	ENST00000297592.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr20_-_14318248_14318264	0.491227	SOX3_SOX2	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr1_-_161015752_161015778	0.490769	SOX3_SOX2	ENST00000435396.1|USF1|ENSG00000158773.10|upstream transcription factor 1 	ENST00000368021.3|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr4_-_100009856_100009902	0.49055	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr4_-_106629796_106629863	0.488716	SOX3_SOX2	ENST00000416543.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000515819.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000420368.2|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000503746.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000340139.5|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000433009.1|INTS12|ENSG00000138785.10|integrator complex subunit 12
hg19_v2_chr2_+_201676908_201677120	0.487347	SOX3_SOX2	ENST00000409226.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000452790.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr6_-_109777128_109777203	0.486838	SOX3_SOX2	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr9_+_103189405_103189455	0.485654	SOX3_SOX2	ENST00000395067.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr5_+_70751442_70751456	0.485626	SOX3_SOX2	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr4_-_48908822_48908845	0.484898	SOX3_SOX2	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr4_-_53617798_53617813	0.484658	SOX3_SOX2	ENST00000443173.1|ERVMER34-1|ENSG00000226887.3|endogenous retrovirus group MER34, member 1
hg19_v2_chr10_-_104262460_104262489	0.483987	SOX3_SOX2	ENST00000446605.2|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000369905.4|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000545684.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chr16_+_67062996_67063019	0.483062	SOX3_SOX2	ENST00000561924.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr1_-_16539094_16539175	0.48106	SOX3_SOX2	ENST00000270747.3|ARHGEF19|ENSG00000142632.12|Rho guanine nucleotide exchange factor (GEF) 19
hg19_v2_chr16_+_24550857_24550878	0.480745	SOX3_SOX2	ENST00000568015.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr17_+_15602891_15603091	0.480155	SOX3_SOX2	ENST00000421016.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000593105.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580259.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583566.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000472486.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000395894.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000581529.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000579694.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580393.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000585194.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583031.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000464847.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr7_-_142139783_142139815	0.48002	SOX3_SOX2	ENST00000390374.3|TRBV7-6|ENSG00000211727.3|T cell receptor beta variable 7-6
hg19_v2_chr7_+_111846643_111846704	0.479456	SOX3_SOX2	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr1_+_212797789_212797818	0.478959	SOX3_SOX2	ENST00000294829.3|FAM71A|ENSG00000162771.6|family with sequence similarity 71, member A
hg19_v2_chr10_-_10836865_10836899	0.478237	SOX3_SOX2	ENST00000446372.2|SFTA1P|ENSG00000225383.2|surfactant associated 1, pseudogene
hg19_v2_chr17_+_30813576_30813637	0.477854	SOX3_SOX2	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr19_-_1568057_1568142	0.476853	SOX3_SOX2	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr19_+_1450112_1450187	0.476019	SOX3_SOX2	ENST00000590469.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000233607.2|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000238483.4|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000590877.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr3_-_197024965_197025038	0.475136	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr20_+_44036900_44036984	0.473481	SOX3_SOX2	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr10_-_75410771_75410813	0.473287	SOX3_SOX2	ENST00000372873.4|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr10_-_99393208_99393237	0.473227	SOX3_SOX2	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr2_+_208576355_208576475	0.473114	SOX3_SOX2	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr9_+_132388566_132388723	0.472441	SOX3_SOX2	ENST00000372480.1|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1
hg19_v2_chr1_-_79472365_79472443	0.472126	SOX3_SOX2	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr21_-_32931290_32931341	0.472092	SOX3_SOX2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr7_+_141463897_141463897	0.472012	SOX3_SOX2	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr17_+_38171681_38171740	0.470882	SOX3_SOX2	ENST00000225474.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000331769.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394148.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000577675.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr17_+_38171614_38171635	0.469073	SOX3_SOX2	ENST00000583218.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394149.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr2_+_220492287_220492338	0.468092	SOX3_SOX2	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chrX_-_128977781_128977869	0.467696	SOX3_SOX2	ENST00000357166.6|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr19_+_48972459_48972490	0.466474	SOX3_SOX2	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr8_+_67104323_67104350	0.465353	SOX3_SOX2	ENST00000518412.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967 	ENST00000518035.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967 	ENST00000517725.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967
hg19_v2_chr11_-_10830463_10830494	0.465175	SOX3_SOX2	ENST00000527419.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530211.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530702.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000524932.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000532570.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr7_-_27219849_27219880	0.463082	SOX3_SOX2	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr2_+_176964458_176964540	0.462829	SOX3_SOX2	ENST00000406506.2|HOXD12|ENSG00000170178.5|homeobox D12 	ENST00000404162.2|HOXD12|ENSG00000170178.5|homeobox D12
hg19_v2_chr8_-_133123406_133123406	0.462715	SOX3_SOX2	ENST00000434736.2|HHLA1|ENSG00000132297.7|HERV-H LTR-associating 1
hg19_v2_chr12_-_57882498_57882509	0.462503	SOX3_SOX2	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr16_+_6069586_6069602	0.461675	SOX3_SOX2	ENST00000547372.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr14_+_57857262_57857334	0.460457	SOX3_SOX2	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr16_-_29910365_29910430	0.45952	SOX3_SOX2	ENST00000346932.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000350527.3|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000537485.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000568380.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr3_-_149688896_149688970	0.459374	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr2_+_10262857_10262873	0.459367	SOX3_SOX2	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr8_-_48651648_48651648	0.457946	SOX3_SOX2	ENST00000408965.3|CEBPD|ENSG00000221869.4|CCAAT/enhancer binding protein (C/EBP), delta
hg19_v2_chr6_-_31763408_31763545	0.457187	SOX3_SOX2	ENST00000444930.2|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr4_+_71588372_71588404	0.457005	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr7_-_100425112_100425121	0.455389	SOX3_SOX2	ENST00000358173.3|EPHB4|ENSG00000196411.5|EPH receptor B4
hg19_v2_chr7_+_86274145_86274166	0.455206	SOX3_SOX2	ENST00000439827.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3 	ENST00000394720.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3 	ENST00000421579.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr8_-_6420759_6420775	0.455082	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr9_+_112810878_112810985	0.454794	SOX3_SOX2	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr1_-_43424500_43424546	0.454439	SOX3_SOX2	ENST00000415851.2|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000426263.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000372500.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1
hg19_v2_chr19_-_53770972_53770972	0.451898	SOX3_SOX2	ENST00000311170.4|VN1R4|ENSG00000228567.2|vomeronasal 1 receptor 4
hg19_v2_chr4_+_8582287_8582314	0.45145	SOX3_SOX2	ENST00000382487.4|GPR78|ENSG00000155269.7|G protein-coupled receptor 78
hg19_v2_chr18_+_3449821_3450034	0.451264	SOX3_SOX2	ENST00000407501.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000405385.3|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000546979.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr1_+_93645314_93645476	0.450486	SOX3_SOX2	ENST00000343253.7|CCDC18|ENSG00000122483.13|coiled-coil domain containing 18
hg19_v2_chr4_+_128703295_128703496	0.450205	SOX3_SOX2	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr3_+_50192537_50192563	0.450204	SOX3_SOX2	ENST00000002829.3|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr19_-_42806444_42806500	0.449488	SOX3_SOX2	ENST00000594989.1|PAFAH1B3|ENSG00000079462.3|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
hg19_v2_chr10_+_103986085_103986085	0.448929	SOX3_SOX2	ENST00000370005.3|ELOVL3|ENSG00000119915.4|ELOVL fatty acid elongase 3
hg19_v2_chr3_+_50192499_50192534	0.444668	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr4_+_71063641_71063766	0.442748	SOX3_SOX2	ENST00000514097.1|ODAM|ENSG00000109205.12|odontogenic, ameloblast asssociated
hg19_v2_chr1_+_6673745_6673830	0.440676	SOX3_SOX2	ENST00000377648.4|PHF13|ENSG00000116273.5|PHD finger protein 13
hg19_v2_chr1_+_11751748_11751798	0.438197	SOX3_SOX2	ENST00000294485.5|DRAXIN|ENSG00000162490.6|dorsal inhibitory axon guidance protein
hg19_v2_chr9_+_96846740_96846767	0.436861	SOX3_SOX2	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr3_-_120170052_120170100	0.435634	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr14_-_60097524_60097538	0.435362	SOX3_SOX2	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr5_+_34656569_34656588	0.435157	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr5_+_14143728_14143829	0.43427	SOX3_SOX2	ENST00000344204.4|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor 	ENST00000537187.1|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor
hg19_v2_chr1_-_200379180_200379191	0.434104	SOX3_SOX2	ENST00000294740.3|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr6_-_105850937_105850983	0.433246	SOX3_SOX2	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr3_-_184095923_184095953	0.433064	SOX3_SOX2	ENST00000445696.2|THPO|ENSG00000090534.13|thrombopoietin 	ENST00000204615.7|THPO|ENSG00000090534.13|thrombopoietin
hg19_v2_chr7_+_128312346_128312371	0.431794	SOX3_SOX2	ENST00000480462.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000378704.3|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000477515.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2
hg19_v2_chr19_+_17420340_17420383	0.431207	SOX3_SOX2	ENST00000359866.4|DDA1|ENSG00000130311.6|DET1 and DDB1 associated 1
hg19_v2_chr1_-_247495045_247495177	0.42983	SOX3_SOX2	ENST00000294753.4|ZNF496|ENSG00000162714.8|zinc finger protein 496 	ENST00000366498.2|ZNF496|ENSG00000162714.8|zinc finger protein 496
hg19_v2_chr12_-_57882577_57882614	0.428897	SOX3_SOX2	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr21_-_42879909_42880042	0.428809	SOX3_SOX2	ENST00000458356.1|TMPRSS2|ENSG00000184012.7|transmembrane protease, serine 2 	ENST00000398585.3|TMPRSS2|ENSG00000184012.7|transmembrane protease, serine 2 	ENST00000424093.1|TMPRSS2|ENSG00000184012.7|transmembrane protease, serine 2
hg19_v2_chrX_+_82763265_82763283	0.428632	SOX3_SOX2	ENST00000373200.2|POU3F4|ENSG00000196767.4|POU class 3 homeobox 4
hg19_v2_chr6_-_13328564_13328815	0.427298	SOX3_SOX2	ENST00000606530.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607658.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000343141.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000356436.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379300.3|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000452989.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000450347.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000422136.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000446018.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379291.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379307.2|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000606370.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607230.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7
hg19_v2_chr10_-_103874692_103874715	0.425852	SOX3_SOX2	ENST00000361198.5|LDB1|ENSG00000198728.6|LIM domain binding 1
hg19_v2_chr19_+_37960240_37960299	0.424267	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr2_+_228336849_228336904	0.423714	SOX3_SOX2	ENST00000409979.2|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000310078.8|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr12_+_49761224_49761259	0.423327	SOX3_SOX2	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chrX_-_128657457_128657477	0.423286	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr7_+_12726474_12726542	0.42287	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr7_-_111202511_111202573	0.422832	SOX3_SOX2	ENST00000452895.1|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000452753.1|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000331762.3|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr3_+_111260954_111260977	0.42207	SOX3_SOX2	ENST00000283285.5|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr10_-_11574274_11574428	0.421097	SOX3_SOX2	ENST00000277575.5|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr22_-_21984282_21984359	0.421055	SOX3_SOX2	ENST00000398873.3|YDJC|ENSG00000161179.9|YdjC homolog (bacterial) 	ENST00000292778.6|YDJC|ENSG00000161179.9|YdjC homolog (bacterial)
hg19_v2_chr10_+_11207438_11207455	0.420528	SOX3_SOX2	ENST00000609692.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000354897.3|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chrX_-_73072534_73072588	0.42038	SOX3_SOX2	ENST00000429829.1|XIST|ENSG00000229807.5|X inactive specific transcript (non-protein coding)
hg19_v2_chr4_+_41258786_41258962	0.419812	SOX3_SOX2	ENST00000503431.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000284440.4|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000508768.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000512788.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
hg19_v2_chr8_+_26435359_26435426	0.419268	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chrX_-_106960285_106960365	0.418452	SOX3_SOX2	ENST00000503515.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372397.2|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr16_-_25026641_25026698	0.418071	SOX3_SOX2	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr22_+_20105259_20105476	0.417724	SOX3_SOX2	ENST00000416427.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000421656.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000423859.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000418705.2|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr2_-_127963343_127963343	0.416179	SOX3_SOX2	ENST00000335247.7|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr17_-_46716647_46716665	0.415932	SOX3_SOX2	ENST00000608940.1|RP11-357H14.17|ENSG00000272763.1|RP11-357H14.17
hg19_v2_chr12_-_8815477_8815490	0.415262	SOX3_SOX2	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr20_-_34252847_34252878	0.414755	SOX3_SOX2	ENST00000317619.3|CPNE1|ENSG00000214078.7|copine I 	ENST00000397446.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397445.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397443.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000430570.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000439806.2|CPNE1|ENSG00000214078.7|copine I 	ENST00000435161.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437340.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000431148.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr1_-_231560790_231560790	0.414373	SOX3_SOX2	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr17_-_7518145_7518234	0.413592	SOX3_SOX2	ENST00000250113.7|FXR2|ENSG00000129245.7|fragile X mental retardation, autosomal homolog 2 	ENST00000571597.1|FXR2|ENSG00000129245.7|fragile X mental retardation, autosomal homolog 2
hg19_v2_chr17_+_1674982_1675041	0.413395	SOX3_SOX2	ENST00000572048.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000573763.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr17_+_75372165_75372357	0.41314	SOX3_SOX2	ENST00000427674.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr14_-_50999307_50999367	0.413073	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr3_+_111260980_111261016	0.412996	SOX3_SOX2	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr10_+_106028923_106028956	0.412945	SOX3_SOX2	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr20_-_36889127_36889174	0.412896	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr4_-_157892167_157892228	0.411366	SOX3_SOX2	ENST00000541126.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr17_+_7323634_7323679	0.410904	SOX3_SOX2	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr16_-_34740829_34740837	0.410562	SOX3_SOX2	ENST00000562591.1|RP11-80F22.15|ENSG00000260857.2|RP11-80F22.15
hg19_v2_chr1_-_1243392_1243403	0.410336	SOX3_SOX2	ENST00000354700.5|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr3_+_152879985_152880038	0.40981	SOX3_SOX2	ENST00000323534.2|RAP2B|ENSG00000181467.2|RAP2B, member of RAS oncogene family
hg19_v2_chr4_-_52904425_52904471	0.409351	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr9_-_74979420_74979580	0.409104	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr2_+_70142189_70142223	0.408956	SOX3_SOX2	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr5_+_34656331_34656351	0.408773	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr16_-_46865047_46865103	0.40872	SOX3_SOX2	ENST00000394806.2|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr3_+_191046810_191046874	0.408051	SOX3_SOX2	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr19_+_18263928_18264072	0.405139	SOX3_SOX2	ENST00000222254.8|PIK3R2|ENSG00000105647.10|phosphoinositide-3-kinase, regulatory subunit 2 (beta)
hg19_v2_chr3_+_141043050_141043063	0.403351	SOX3_SOX2	ENST00000509842.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr11_-_117103208_117103288	0.403092	SOX3_SOX2	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr19_+_56989609_56989625	0.40033	SOX3_SOX2	ENST00000601875.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr3_+_51428704_51428737	0.39936	SOX3_SOX2	ENST00000323686.4|RBM15B|ENSG00000179837.6|RNA binding motif protein 15B
hg19_v2_chr16_-_28503357_28503409	0.398828	SOX3_SOX2	ENST00000333496.9|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000561505.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000567963.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000354630.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000355477.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357076.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000565688.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000359984.7|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chr16_-_11375179_11375207	0.397487	SOX3_SOX2	ENST00000312511.3|PRM1|ENSG00000175646.3|protamine 1
hg19_v2_chr4_+_71587669_71587752	0.396984	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr3_+_185304059_185304124	0.396682	SOX3_SOX2	ENST00000427465.2|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr11_-_125550726_125550747	0.396417	SOX3_SOX2	ENST00000315608.3|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1 	ENST00000530048.1|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1
hg19_v2_chr1_-_243418344_243418356	0.395086	SOX3_SOX2	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr3_+_130613226_130613485	0.395057	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr7_+_129015484_129015519	0.394191	SOX3_SOX2	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr5_-_95158644_95158709	0.394162	SOX3_SOX2	ENST00000237858.6|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr16_-_30394143_30394171	0.393659	SOX3_SOX2	ENST00000321367.3|SEPT1|ENSG00000180096.7|septin 1 	ENST00000571393.1|SEPT1|ENSG00000180096.7|septin 1
hg19_v2_chr1_+_955448_955508	0.393596	SOX3_SOX2	ENST00000379370.2|AGRN|ENSG00000188157.9|agrin
hg19_v2_chr8_+_94929969_94929980	0.393357	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr11_-_64013663_64013672	0.393062	SOX3_SOX2	ENST00000392210.2|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr3_-_176914238_176914277	0.390944	SOX3_SOX2	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr11_+_73882311_73882413	0.388401	SOX3_SOX2	ENST00000398427.4|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1 	ENST00000544401.1|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1
hg19_v2_chr9_+_132388423_132388484	0.387828	SOX3_SOX2	ENST00000372483.4|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000459968.2|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000482347.1|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000372481.3|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1
hg19_v2_chr3_-_105588231_105588396	0.387814	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr22_-_22292934_22292967	0.387735	SOX3_SOX2	ENST00000538191.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000424647.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000407142.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F
hg19_v2_chr9_-_35111570_35111600	0.387514	SOX3_SOX2	ENST00000378561.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000603301.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr16_-_80926457_80926494	0.387498	SOX3_SOX2	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr16_-_28503080_28503304	0.386783	SOX3_SOX2	ENST00000565316.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000565778.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357857.9|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000568558.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357806.7|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chr4_-_76928641_76928668	0.386626	SOX3_SOX2	ENST00000264888.5|CXCL9|ENSG00000138755.5|chemokine (C-X-C motif) ligand 9
hg19_v2_chr1_+_156119466_156119514	0.386408	SOX3_SOX2	ENST00000414683.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr5_+_54398463_54398480	0.385879	SOX3_SOX2	ENST00000274306.6|GZMA|ENSG00000145649.7|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)
hg19_v2_chr20_+_3869423_3869486	0.384834	SOX3_SOX2	ENST00000497424.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chrX_+_44703249_44703273	0.384257	SOX3_SOX2	ENST00000339042.4|DUSP21|ENSG00000189037.6|dual specificity phosphatase 21
hg19_v2_chr1_-_31381528_31381659	0.383667	SOX3_SOX2	ENST00000339394.6|SDC3|ENSG00000162512.11|syndecan 3
hg19_v2_chr9_+_109694914_109694927	0.383428	SOX3_SOX2	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr18_+_3451646_3451722	0.383162	SOX3_SOX2	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr14_+_27342334_27342369	0.382991	SOX3_SOX2	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr2_-_38978492_38978636	0.382338	SOX3_SOX2	ENST00000409276.1|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000446327.2|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000313117.6|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7
hg19_v2_chr8_+_11660227_11660306	0.381248	SOX3_SOX2	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr20_+_62716348_62716369	0.38092	SOX3_SOX2	ENST00000349451.3|OPRL1|ENSG00000125510.11|opiate receptor-like 1
hg19_v2_chr5_+_140800638_140800795	0.380696	SOX3_SOX2	ENST00000398587.2|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11 	ENST00000518882.1|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11
hg19_v2_chr1_+_151739131_151739177	0.380605	SOX3_SOX2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr18_-_64271316_64271334	0.379732	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr3_-_195310802_195310818	0.379525	SOX3_SOX2	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr20_+_60698180_60698208	0.379221	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr11_+_55594695_55594695	0.378557	SOX3_SOX2	ENST00000378397.1|OR5L2|ENSG00000205030.1|olfactory receptor, family 5, subfamily L, member 2
hg19_v2_chr13_-_99404875_99404942	0.378187	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chrX_+_150866779_150866779	0.377186	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr18_+_6729725_6730042	0.376952	SOX3_SOX2	ENST00000400091.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000583410.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000584387.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr5_+_82767583_82767744	0.37667	SOX3_SOX2	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr11_+_118478313_118478358	0.375658	SOX3_SOX2	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr4_-_39979576_39979588	0.375188	SOX3_SOX2	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr20_+_58179582_58179603	0.374279	SOX3_SOX2	ENST00000371015.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3 	ENST00000395639.4|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr16_-_20556492_20556492	0.373401	SOX3_SOX2	ENST00000568098.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr12_-_82152420_82152441	0.373336	SOX3_SOX2	ENST00000552948.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000548586.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr10_-_25012597_25012732	0.372316	SOX3_SOX2	ENST00000396432.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr6_+_56911476_56911524	0.372316	SOX3_SOX2	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr10_-_69991865_69991871	0.370115	SOX3_SOX2	ENST00000373673.3|ATOH7|ENSG00000179774.7|atonal homolog 7 (Drosophila)
hg19_v2_chr17_-_33446735_33446785	0.36987	SOX3_SOX2	ENST00000460118.2|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000335858.7|RAD51D|ENSG00000185379.16|RAD51 paralog D
hg19_v2_chr15_-_83876758_83876770	0.36945	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr19_-_39264072_39264132	0.368498	SOX3_SOX2	ENST00000599035.1|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7 	ENST00000378626.4|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7
hg19_v2_chr9_+_112403059_112403079	0.368354	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr8_+_9911778_9911880	0.36821	SOX3_SOX2	ENST00000317173.4|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A 	ENST00000441698.2|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A
hg19_v2_chr13_-_107187462_107187462	0.367778	SOX3_SOX2	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr9_-_117420052_117420092	0.367236	SOX3_SOX2	ENST00000423632.1|RP11-402G3.5|ENSG00000230054.1|RP11-402G3.5
hg19_v2_chr4_+_144257915_144258009	0.367132	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chrX_+_12993202_12993239	0.366929	SOX3_SOX2	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr7_-_151511911_151511962	0.365392	SOX3_SOX2	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr7_-_150779995_150780319	0.365244	SOX3_SOX2	ENST00000462940.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000492838.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000392818.3|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000488752.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000476627.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr10_-_25012115_25012174	0.364911	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr16_+_3162557_3162796	0.363063	SOX3_SOX2	ENST00000382192.3|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000219091.4|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000444510.2|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000414351.1|ZNF205|ENSG00000122386.6|zinc finger protein 205
hg19_v2_chr12_-_42631529_42631602	0.362944	SOX3_SOX2	ENST00000548917.1|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chrX_+_51927919_51927991	0.362799	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr20_-_45985464_45985567	0.362465	SOX3_SOX2	ENST00000458360.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000262975.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr19_-_20844343_20844351	0.361684	SOX3_SOX2	ENST00000595405.1|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr1_-_31902614_31902614	0.361668	SOX3_SOX2	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chrX_+_84498989_84499003	0.359964	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr5_+_72112418_72112456	0.358726	SOX3_SOX2	ENST00000454282.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr19_-_42498369_42498390	0.358231	SOX3_SOX2	ENST00000302102.5|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENST00000545399.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr5_-_156593273_156593276	0.357798	SOX3_SOX2	ENST00000302938.4|FAM71B|ENSG00000170613.4|family with sequence similarity 71, member B
hg19_v2_chrX_-_131352152_131352204	0.356005	SOX3_SOX2	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr5_+_76011868_76012005	0.354844	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr22_-_39151947_39151994	0.354244	SOX3_SOX2	ENST00000216064.4|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr19_+_10765003_10765058	0.354218	SOX3_SOX2	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr2_-_106015491_106015518	0.354094	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr16_+_30662184_30662206	0.352165	SOX3_SOX2	ENST00000300835.4|PRR14|ENSG00000156858.7|proline rich 14
hg19_v2_chr9_-_35111420_35111455	0.351601	SOX3_SOX2	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr12_-_106641728_106641805	0.350668	SOX3_SOX2	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr1_-_24438664_24438671	0.350489	SOX3_SOX2	ENST00000374434.3|MYOM3|ENSG00000142661.14|myomesin 3 	ENST00000330966.7|MYOM3|ENSG00000142661.14|myomesin 3 	ENST00000329601.7|MYOM3|ENSG00000142661.14|myomesin 3
hg19_v2_chr17_+_27920486_27920525	0.348682	SOX3_SOX2	ENST00000394859.3|ANKRD13B|ENSG00000198720.8|ankyrin repeat domain 13B
hg19_v2_chr7_+_106505696_106505798	0.348003	SOX3_SOX2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr17_-_42441204_42441243	0.347828	SOX3_SOX2	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr1_+_206557366_206557368	0.347352	SOX3_SOX2	ENST00000414007.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2 	ENST00000419187.2|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chr1_-_23495303_23495338	0.347321	SOX3_SOX2	ENST00000314174.5|LUZP1|ENSG00000169641.9|leucine zipper protein 1 	ENST00000471849.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr3_-_197025447_197025533	0.347112	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr7_-_42276612_42276782	0.346785	SOX3_SOX2	ENST00000395925.3|GLI3|ENSG00000106571.8|GLI family zinc finger 3 	ENST00000437480.1|GLI3|ENSG00000106571.8|GLI family zinc finger 3
hg19_v2_chr20_-_30433396_30433420	0.34644	SOX3_SOX2	ENST00000375978.3|FOXS1|ENSG00000179772.6|forkhead box S1
hg19_v2_chr5_-_141338627_141338627	0.345806	SOX3_SOX2	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr3_+_14860469_14860469	0.344878	SOX3_SOX2	ENST00000285046.5|FGD5|ENSG00000154783.6|FYVE, RhoGEF and PH domain containing 5
hg19_v2_chr16_+_447209_447225	0.344771	SOX3_SOX2	ENST00000382940.4|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4 	ENST00000219479.2|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4
hg19_v2_chr12_+_49761273_49761330	0.343938	SOX3_SOX2	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr14_+_53019993_53020137	0.343378	SOX3_SOX2	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr19_-_59030921_59030974	0.343362	SOX3_SOX2	ENST00000354590.3|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45 	ENST00000596739.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr4_-_90757364_90757396	0.34293	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr2_-_39348137_39348212	0.342409	SOX3_SOX2	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr8_+_87878640_87878673	0.34222	SOX3_SOX2	ENST00000518476.1|CNBD1|ENSG00000176571.7|cyclic nucleotide binding domain containing 1
hg19_v2_chr4_+_54243798_54243854	0.341483	SOX3_SOX2	ENST00000337488.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000358575.5|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000507922.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chrX_+_45364633_45364657	0.341014	SOX3_SOX2	ENST00000435394.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1	ENST00000609127.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1
hg19_v2_chr1_-_53793725_53793789	0.340986	SOX3_SOX2	ENST00000371454.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr12_-_104359475_104359513	0.340784	SOX3_SOX2	ENST00000553183.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr2_-_198175495_198175525	0.340745	SOX3_SOX2	ENST00000409153.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000409919.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000539527.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44
hg19_v2_chr1_+_93544821_93544868	0.339713	SOX3_SOX2	ENST00000370303.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr11_+_120081475_120081488	0.33962	SOX3_SOX2	ENST00000328965.4|OAF|ENSG00000184232.4|OAF homolog (Drosophila)
hg19_v2_chr19_+_21324863_21324880	0.339368	SOX3_SOX2	ENST00000598331.1|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr4_-_10458982_10459007	0.339277	SOX3_SOX2	ENST00000326756.3|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr5_-_95158375_95158485	0.338971	SOX3_SOX2	ENST00000512469.2|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000379979.4|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000505427.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000508780.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chrX_-_134049233_134049258	0.338484	SOX3_SOX2	ENST00000370779.4|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr11_+_65339820_65340051	0.336786	SOX3_SOX2	ENST00000316409.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000449319.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000530349.1|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B
hg19_v2_chr5_-_115910091_115910141	0.336519	SOX3_SOX2	ENST00000257414.8|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr2_+_30569506_30569525	0.336287	SOX3_SOX2	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr9_-_130331297_130331393	0.335956	SOX3_SOX2	ENST00000373312.3|FAM129B|ENSG00000136830.7|family with sequence similarity 129, member B
hg19_v2_chr21_+_47268058_47268079	0.335509	SOX3_SOX2	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr6_+_89790490_89790506	0.334572	SOX3_SOX2	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr4_+_144258021_144258052	0.334429	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr15_-_44487408_44487476	0.333357	SOX3_SOX2	ENST00000402883.1|FRMD5|ENSG00000171877.15|FERM domain containing 5 	ENST00000417257.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chrX_+_153146127_153146127	0.333162	SOX3_SOX2	ENST00000452593.1|LCA10|ENSG00000196987.2|Putative lung carcinoma-associated protein 10  	ENST00000357566.1|LCA10|ENSG00000196987.2|Putative lung carcinoma-associated protein 10
hg19_v2_chr11_-_31832207_31832226	0.333119	SOX3_SOX2	ENST00000379109.2|PAX6|ENSG00000007372.16|paired box 6
hg19_v2_chr15_-_73076030_73076126	0.333057	SOX3_SOX2	ENST00000311669.8|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr18_-_29340827_29340845	0.332454	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr8_-_80993010_80993073	0.332233	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr9_+_80912059_80912081	0.331446	SOX3_SOX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr12_-_22063787_22063912	0.33085	SOX3_SOX2	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr3_-_183735731_183735803	0.330651	SOX3_SOX2	ENST00000334444.6|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr10_-_30918669_30918691	0.330328	SOX3_SOX2	ENST00000375318.2|LYZL2|ENSG00000151033.7|lysozyme-like 2
hg19_v2_chr17_+_34842512_34842572	0.330312	SOX3_SOX2	ENST00000588253.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000592616.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000590858.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000588357.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3
hg19_v2_chr16_+_6069072_6069132	0.330061	SOX3_SOX2	ENST00000547605.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000550418.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000553186.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr19_-_42498231_42498356	0.329973	SOX3_SOX2	ENST00000602133.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr7_-_105925558_105925638	0.329942	SOX3_SOX2	ENST00000222553.3|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr2_+_169923577_169923592	0.329723	SOX3_SOX2	ENST00000432060.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr14_+_70078303_70078321	0.329139	SOX3_SOX2	ENST00000342745.4|KIAA0247|ENSG00000100647.7|KIAA0247
hg19_v2_chr19_-_40919271_40919294	0.328944	SOX3_SOX2	ENST00000291825.7|PRX|ENSG00000105227.10|periaxin 	ENST00000324001.7|PRX|ENSG00000105227.10|periaxin
hg19_v2_chr14_-_105531759_105531782	0.328693	SOX3_SOX2	ENST00000329797.3|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000539291.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000392585.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132
hg19_v2_chr1_+_197886461_197886558	0.32866	SOX3_SOX2	ENST00000367388.3|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000337020.2|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367387.4|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr20_-_45985414_45985462	0.328166	SOX3_SOX2	ENST00000461685.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000372023.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000540497.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000435836.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000471951.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000352431.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000396281.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000355972.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000360911.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr15_+_74908147_74908220	0.327923	SOX3_SOX2	ENST00000568139.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000563297.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000568488.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000352989.5|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000348245.3|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chr14_-_105487381_105487485	0.327819	SOX3_SOX2	ENST00000392590.3|CDCA4|ENSG00000170779.10|cell division cycle associated 4 	ENST00000336219.3|CDCA4|ENSG00000170779.10|cell division cycle associated 4
hg19_v2_chr17_+_34538310_34538544	0.326372	SOX3_SOX2	ENST00000444414.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000378350.4|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000389068.5|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000588929.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000589079.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000589336.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000400702.4|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000591167.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000586598.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000591637.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000378352.4|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000358756.5|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1
hg19_v2_chr1_-_234667504_234667525	0.325729	SOX3_SOX2	ENST00000421207.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1	ENST00000435574.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1
hg19_v2_chr8_-_101962777_101962805	0.325019	SOX3_SOX2	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chrX_+_69488155_69488172	0.324622	SOX3_SOX2	ENST00000374495.3|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr17_+_75283973_75284045	0.323159	SOX3_SOX2	ENST00000431235.2|SEPT9|ENSG00000184640.13|septin 9 	ENST00000449803.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr6_+_30029008_30029055	0.322795	SOX3_SOX2	ENST00000332435.5|ZNRD1|ENSG00000066379.10|zinc ribbon domain containing 1 	ENST00000376782.2|ZNRD1|ENSG00000066379.10|zinc ribbon domain containing 1 	ENST00000359374.4|ZNRD1|ENSG00000066379.10|zinc ribbon domain containing 1 	ENST00000376785.2|ZNRD1|ENSG00000066379.10|zinc ribbon domain containing 1
hg19_v2_chr3_-_123680246_123680264	0.322716	SOX3_SOX2	ENST00000488653.2|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr15_+_85144217_85144281	0.322189	SOX3_SOX2	ENST00000540936.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000448803.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546275.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546148.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000442073.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000334141.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000358472.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000502939.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000379358.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000327179.6|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2
hg19_v2_chr17_-_74287333_74287333	0.321939	SOX3_SOX2	ENST00000447564.2|QRICH2|ENSG00000129646.9|glutamine rich 2
hg19_v2_chr11_+_120971882_120971882	0.32134	SOX3_SOX2	ENST00000392793.1|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr8_+_85618155_85618173	0.321309	SOX3_SOX2	ENST00000523850.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like 	ENST00000521376.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr14_+_67707826_67707994	0.320492	SOX3_SOX2	ENST00000261681.4|MPP5|ENSG00000072415.4|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
hg19_v2_chr5_-_115872142_115872154	0.319045	SOX3_SOX2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr3_+_3841108_3841126	0.318885	SOX3_SOX2	ENST00000319331.3|LRRN1|ENSG00000175928.5|leucine rich repeat neuronal 1
hg19_v2_chr12_-_54653313_54653416	0.318646	SOX3_SOX2	ENST00000550411.1|CBX5|ENSG00000094916.9|chromobox homolog 5 	ENST00000439541.2|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr6_+_167704838_167704952	0.318582	SOX3_SOX2	ENST00000366829.2|UNC93A|ENSG00000112494.5|unc-93 homolog A (C. elegans)
hg19_v2_chr14_+_74815116_74815202	0.31843	SOX3_SOX2	ENST00000256362.4|VRTN|ENSG00000133980.4|vertebrae development associated
hg19_v2_chr4_-_90756769_90756846	0.318048	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr10_+_29577974_29578011	0.317402	SOX3_SOX2	ENST00000375500.3|LYZL1|ENSG00000120563.4|lysozyme-like 1
hg19_v2_chr9_-_34620440_34620515	0.316731	SOX3_SOX2	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr1_+_205682497_205682497	0.316563	SOX3_SOX2	ENST00000598338.1|AC119673.1|ENSG00000268313.1|AC119673.1
hg19_v2_chr11_-_10562710_10562782	0.316146	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chrX_-_51812268_51812368	0.315652	SOX3_SOX2	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr1_+_159175201_159175264	0.313165	SOX3_SOX2	ENST00000368121.2|DARC|ENSG00000213088.5|Duffy blood group, atypical chemokine receptor
hg19_v2_chr8_-_33424636_33424653	0.312784	SOX3_SOX2	ENST00000256257.1|RNF122|ENSG00000133874.1|ring finger protein 122
hg19_v2_chr19_+_7580944_7581031	0.312231	SOX3_SOX2	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr13_-_25496926_25497034	0.309988	SOX3_SOX2	ENST00000545981.1|CENPJ|ENSG00000151849.10|centromere protein J 	ENST00000381884.4|CENPJ|ENSG00000151849.10|centromere protein J
hg19_v2_chrX_+_51928002_51928017	0.309234	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr1_+_31886653_31886721	0.308417	SOX3_SOX2	ENST00000536384.1|SERINC2|ENSG00000168528.7|serine incorporator 2
hg19_v2_chr1_+_228337553_228337602	0.308028	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr6_-_133055896_133055910	0.307161	SOX3_SOX2	ENST00000367927.5|VNN3|ENSG00000093134.9|vanin 3 	ENST00000425515.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000207771.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000392393.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000450865.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000392394.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr19_+_19303572_19303651	0.307151	SOX3_SOX2	ENST00000407360.3|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein 	ENST00000540981.1|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr22_+_21771656_21771693	0.306922	SOX3_SOX2	ENST00000407464.2|HIC2|ENSG00000169635.5|hypermethylated in cancer 2
hg19_v2_chr7_+_44836276_44836283	0.306706	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr14_-_58618896_58618939	0.306158	SOX3_SOX2	ENST00000267485.7|C14orf37|ENSG00000139971.11|chromosome 14 open reading frame 37
hg19_v2_chr12_-_118498958_118499021	0.305983	SOX3_SOX2	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr11_-_6817128_6817128	0.305351	SOX3_SOX2	ENST00000332601.3|OR6A2|ENSG00000184933.3|olfactory receptor, family 6, subfamily A, member 2
hg19_v2_chr5_-_137514288_137514331	0.305345	SOX3_SOX2	ENST00000454473.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000418329.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000455658.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000230901.5|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000402931.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chrX_+_70503433_70503517	0.3052	SOX3_SOX2	ENST00000276079.8|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000373856.3|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000373841.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000420903.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr7_-_29234802_29234895	0.305147	SOX3_SOX2	ENST00000449801.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000409850.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chr1_-_116311402_116311413	0.304221	SOX3_SOX2	ENST00000261448.5|CASQ2|ENSG00000118729.10|calsequestrin 2 (cardiac muscle)
hg19_v2_chr20_+_30697298_30697330	0.302048	SOX3_SOX2	ENST00000398022.2|TM9SF4|ENSG00000101337.11|transmembrane 9 superfamily protein member 4
hg19_v2_chr3_+_183415558_183415649	0.301628	SOX3_SOX2	ENST00000305135.5|YEATS2|ENSG00000163872.11|YEATS domain containing 2
hg19_v2_chr9_-_103115185_103115235	0.301263	SOX3_SOX2	ENST00000374902.4|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr20_+_68306_68351	0.301115	SOX3_SOX2	ENST00000382410.2|DEFB125|ENSG00000178591.6|defensin, beta 125
hg19_v2_chr9_+_135906375_135906404	0.300351	SOX3_SOX2	ENST00000372099.6|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000372095.5|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000372108.5|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000342018.8|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000439697.1|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa
hg19_v2_chr12_-_58026920_58026993	0.300192	SOX3_SOX2	ENST00000550764.1|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1 	ENST00000551220.1|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
hg19_v2_chr2_-_17981462_17981584	0.299809	SOX3_SOX2	ENST00000402989.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000428868.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr7_-_29186008_29186172	0.299614	SOX3_SOX2	ENST00000396276.3|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000265394.5|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chr19_-_44100275_44100302	0.299446	SOX3_SOX2	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr7_-_150780609_150780633	0.299416	SOX3_SOX2	ENST00000297533.4|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr4_+_4388805_4388855	0.299148	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr9_-_36400857_36400902	0.298713	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr8_+_67405755_67405789	0.2972	SOX3_SOX2	ENST00000521495.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr12_-_8815404_8815438	0.297156	SOX3_SOX2	ENST00000359478.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000396549.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr22_-_39151995_39152045	0.296626	SOX3_SOX2	ENST00000405018.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000438058.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr3_-_57233966_57234014	0.296578	SOX3_SOX2	ENST00000473921.1|HESX1|ENSG00000163666.4|HESX homeobox 1 	ENST00000295934.3|HESX1|ENSG00000163666.4|HESX homeobox 1
hg19_v2_chr17_+_34640031_34640034	0.296236	SOX3_SOX2	ENST00000339270.6|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2 	ENST00000482104.1|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2
hg19_v2_chr5_-_157079372_157079395	0.295493	SOX3_SOX2	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr1_-_156023580_156023605	0.295194	SOX3_SOX2	ENST00000368309.3|UBQLN4|ENSG00000160803.7|ubiquilin 4
hg19_v2_chr16_-_2837949_2837949	0.295159	SOX3_SOX2	ENST00000570702.1|PRSS33|ENSG00000103355.8|protease, serine, 33
hg19_v2_chr5_-_14871866_14871916	0.295073	SOX3_SOX2	ENST00000284268.6|ANKH|ENSG00000154122.8|ANKH inorganic pyrophosphate transport regulator
hg19_v2_chr14_+_24779376_24779394	0.294649	SOX3_SOX2	ENST00000530080.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2
hg19_v2_chr19_+_10764937_10764998	0.29375	SOX3_SOX2	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr10_-_104262426_104262437	0.293678	SOX3_SOX2	ENST00000487599.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chrX_-_106959631_106959775	0.293632	SOX3_SOX2	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr5_+_180326145_180326274	0.292746	SOX3_SOX2	ENST00000508408.1|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000511704.1|BTNL8|ENSG00000113303.7|butyrophilin-like 8
hg19_v2_chr17_+_54230819_54230871	0.29263	SOX3_SOX2	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr11_-_36310958_36310999	0.292399	SOX3_SOX2	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr1_+_12538594_12538614	0.292318	SOX3_SOX2	ENST00000543710.1|VPS13D|ENSG00000048707.9|vacuolar protein sorting 13 homolog D (S. cerevisiae)
hg19_v2_chr19_+_45596398_45596463	0.291692	SOX3_SOX2	ENST00000544069.2|PPP1R37|ENSG00000104866.6|protein phosphatase 1, regulatory subunit 37
hg19_v2_chr3_-_57583130_57583152	0.290694	SOX3_SOX2	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr7_+_115850547_115850626	0.290104	SOX3_SOX2	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr17_+_34639793_34639876	0.289807	SOX3_SOX2	ENST00000394465.2|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2 	ENST00000394463.2|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2 	ENST00000378342.4|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2
hg19_v2_chr9_+_139221880_139221932	0.289277	SOX3_SOX2	ENST00000392945.3|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1 	ENST00000440944.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr2_-_20425158_20425206	0.289006	SOX3_SOX2	ENST00000381150.1|SDC1|ENSG00000115884.6|syndecan 1
hg19_v2_chr11_+_236540_236552	0.288671	SOX3_SOX2	ENST00000532097.1|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr12_-_125401885_125401914	0.287467	SOX3_SOX2	ENST00000542416.1|UBC|ENSG00000150991.10|ubiquitin C
hg19_v2_chr13_+_34392200_34392221	0.287249	SOX3_SOX2	ENST00000434425.1|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr1_-_53793584_53793719	0.286914	SOX3_SOX2	ENST00000354412.3|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000347547.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000306052.6|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr19_+_11071685_11071798	0.286862	SOX3_SOX2	ENST00000541122.2|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENST00000589677.1|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENST00000444061.3|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
hg19_v2_chr13_+_30002846_30002862	0.286839	SOX3_SOX2	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr1_-_114695537_114695602	0.286636	SOX3_SOX2	ENST00000609117.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608879.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608203.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000609577.1|SYT6|ENSG00000134207.10|synaptotagmin VI
hg19_v2_chr19_+_7743387_7743387	0.286557	SOX3_SOX2	ENST00000597959.1|CTD-3214H19.16|ENSG00000269711.1|CTD-3214H19.16
hg19_v2_chr2_+_71205510_71205637	0.286501	SOX3_SOX2	ENST00000272421.6|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53 	ENST00000441349.1|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53 	ENST00000457410.1|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53
hg19_v2_chr16_+_33629600_33629681	0.286121	SOX3_SOX2	ENST00000562905.2|IGHV3OR16-13|ENSG00000271178.1|immunoglobulin heavy variable 3/OR16-13 (non-functional)
hg19_v2_chr16_-_18887627_18887627	0.285855	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr12_+_106976678_106976708	0.284965	SOX3_SOX2	ENST00000392842.1|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr22_+_44568825_44568837	0.284848	SOX3_SOX2	ENST00000422871.1|PARVG|ENSG00000138964.12|parvin, gamma
hg19_v2_chr8_+_42195972_42195991	0.284661	SOX3_SOX2	ENST00000532157.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000265421.4|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000520008.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr7_-_88425025_88425046	0.284204	SOX3_SOX2	ENST00000297203.2|C7orf62|ENSG00000164645.2|chromosome 7 open reading frame 62
hg19_v2_chr2_+_183580954_183581049	0.283955	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr6_-_89927151_89927156	0.282862	SOX3_SOX2	ENST00000454853.2|GABRR1|ENSG00000146276.7|gamma-aminobutyric acid (GABA) A receptor, rho 1
hg19_v2_chr12_-_46662772_46662835	0.282323	SOX3_SOX2	ENST00000549049.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000439706.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000398637.5|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr5_-_157079428_157079452	0.28226	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr7_-_150924121_150924332	0.282152	SOX3_SOX2	ENST00000441774.1|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000222388.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000287844.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2
hg19_v2_chr1_-_202113805_202113883	0.281655	SOX3_SOX2	ENST00000272217.2|ARL8A|ENSG00000143862.3|ADP-ribosylation factor-like 8A
hg19_v2_chr3_-_128294929_128294929	0.281454	SOX3_SOX2	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr8_-_66753682_66753743	0.280225	SOX3_SOX2	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr6_+_28193037_28193117	0.279197	SOX3_SOX2	ENST00000531981.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000425468.2|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000252207.5|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000531979.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000527436.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9
hg19_v2_chr19_+_19303720_19303783	0.27919	SOX3_SOX2	ENST00000392324.4|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr1_+_40915725_40915808	0.279165	SOX3_SOX2	ENST00000484445.1|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000411995.2|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000361584.3|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B
hg19_v2_chr20_+_34042962_34043028	0.279114	SOX3_SOX2	ENST00000446710.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa 	ENST00000420564.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa
hg19_v2_chr8_-_18871159_18871201	0.278599	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr12_-_133707021_133707071	0.278051	SOX3_SOX2	ENST00000537226.1|ZNF891|ENSG00000214029.3|zinc finger protein 891
hg19_v2_chr12_-_31477072_31477110	0.278037	SOX3_SOX2	ENST00000454658.2|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr2_+_70121075_70121102	0.277548	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chr17_-_36831156_36831187	0.277135	SOX3_SOX2	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr10_+_102222798_102222798	0.276955	SOX3_SOX2	ENST00000343737.5|WNT8B|ENSG00000075290.7|wingless-type MMTV integration site family, member 8B
hg19_v2_chr1_-_193075180_193075244	0.276618	SOX3_SOX2	ENST00000367440.3|GLRX2|ENSG00000023572.4|glutaredoxin 2
hg19_v2_chr8_-_70016408_70016456	0.275645	SOX3_SOX2	ENST00000518540.1|RP11-600K15.1|ENSG00000253658.1|RP11-600K15.1
hg19_v2_chr19_-_59031118_59031193	0.275472	SOX3_SOX2	ENST00000600990.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr3_-_141747459_141747507	0.274507	SOX3_SOX2	ENST00000477292.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000478006.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000495310.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000486111.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr2_+_58655461_58655492	0.273841	SOX3_SOX2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr16_-_3068171_3068191	0.273612	SOX3_SOX2	ENST00000572154.1|CLDN6|ENSG00000184697.6|claudin 6 	ENST00000328796.4|CLDN6|ENSG00000184697.6|claudin 6
hg19_v2_chr6_-_127664683_127664718	0.273589	SOX3_SOX2	ENST00000528402.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454591.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chrX_+_103294483_103294530	0.273286	SOX3_SOX2	ENST00000355016.3|H2BFM|ENSG00000101812.8|H2B histone family, member M
hg19_v2_chr4_-_140477928_140477990	0.272873	SOX3_SOX2	ENST00000274031.3|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7
hg19_v2_chr11_-_64013288_64013343	0.272824	SOX3_SOX2	ENST00000542235.1|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr3_-_57199397_57199432	0.272151	SOX3_SOX2	ENST00000296318.7|IL17RD|ENSG00000144730.12|interleukin 17 receptor D
hg19_v2_chr2_+_169923504_169923545	0.271622	SOX3_SOX2	ENST00000357546.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr19_-_17375527_17375538	0.271396	SOX3_SOX2	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr15_-_65579177_65579253	0.270995	SOX3_SOX2	ENST00000444347.2|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16 	ENST00000261888.6|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16
hg19_v2_chrX_-_63425561_63425624	0.270302	SOX3_SOX2	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr8_+_42196000_42196021	0.269959	SOX3_SOX2	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr19_-_55690758_55690780	0.269949	SOX3_SOX2	ENST00000590851.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr10_+_99349450_99349458	0.269915	SOX3_SOX2	ENST00000370640.3|C10orf62|ENSG00000203942.3|chromosome 10 open reading frame 62
hg19_v2_chr16_+_1832902_1833008	0.26989	SOX3_SOX2	ENST00000262302.9|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000563136.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565987.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000543305.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000568287.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565134.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2
hg19_v2_chr10_+_123872483_123872573	0.269394	SOX3_SOX2	ENST00000369001.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr8_-_95487331_95487359	0.26888	SOX3_SOX2	ENST00000336148.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr15_-_65117807_65117867	0.26858	SOX3_SOX2	ENST00000559239.1|PIF1|ENSG00000140451.8|PIF1 5'-to-3' DNA helicase 	ENST00000268043.4|PIF1|ENSG00000140451.8|PIF1 5'-to-3' DNA helicase 	ENST00000333425.6|PIF1|ENSG00000140451.8|PIF1 5'-to-3' DNA helicase
hg19_v2_chr3_+_50649302_50649339	0.268263	SOX3_SOX2	ENST00000446044.1|MAPKAPK3|ENSG00000114738.6|mitogen-activated protein kinase-activated protein kinase 3
hg19_v2_chr12_-_100378006_100378049	0.267441	SOX3_SOX2	ENST00000547776.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000329257.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000547010.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr12_+_64238539_64238600	0.267411	SOX3_SOX2	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chr21_+_17792672_17792775	0.267106	SOX3_SOX2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr20_+_55108302_55108302	0.266336	SOX3_SOX2	ENST00000371325.1|FAM209B|ENSG00000213714.1|family with sequence similarity 209, member B
hg19_v2_chrX_+_21958814_21958864	0.265848	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr13_-_114843416_114843438	0.265694	SOX3_SOX2	ENST00000389544.4|RASA3|ENSG00000185989.9|RAS p21 protein activator 3
hg19_v2_chr13_-_111567353_111567432	0.265559	SOX3_SOX2	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chr12_-_49075941_49076001	0.265335	SOX3_SOX2	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr11_+_236959_237015	0.265254	SOX3_SOX2	ENST00000431206.2|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENST00000528906.1|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr12_-_11036844_11036861	0.264832	SOX3_SOX2	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chr15_-_101792137_101792159	0.264358	SOX3_SOX2	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr17_+_43138664_43138701	0.264328	SOX3_SOX2	ENST00000258960.2|NMT1|ENSG00000136448.7|N-myristoyltransferase 1
hg19_v2_chr11_-_67141090_67141208	0.262774	SOX3_SOX2	ENST00000312438.7|CLCF1|ENSG00000175505.9|cardiotrophin-like cytokine factor 1
hg19_v2_chr18_-_24445729_24445782	0.26241	SOX3_SOX2	ENST00000383168.4|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr22_+_42372931_42372947	0.26237	SOX3_SOX2	ENST00000328414.8|SEPT3|ENSG00000100167.15|septin 3 	ENST00000396425.3|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr17_-_37764128_37764258	0.261581	SOX3_SOX2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr15_-_41836441_41836475	0.261223	SOX3_SOX2	ENST00000567866.1|RPAP1|ENSG00000103932.7|RNA polymerase II associated protein 1 	ENST00000561603.1|RPAP1|ENSG00000103932.7|RNA polymerase II associated protein 1 	ENST00000304330.4|RPAP1|ENSG00000103932.7|RNA polymerase II associated protein 1 	ENST00000566863.1|RPAP1|ENSG00000103932.7|RNA polymerase II associated protein 1
hg19_v2_chr15_-_89764929_89764982	0.260961	SOX3_SOX2	ENST00000268125.5|RLBP1|ENSG00000140522.7|retinaldehyde binding protein 1
hg19_v2_chr14_+_22409308_22409322	0.260691	SOX3_SOX2	ENST00000390441.2|TRAV9-2|ENSG00000211793.2|T cell receptor alpha variable 9-2
hg19_v2_chr11_+_126173647_126173647	0.260669	SOX3_SOX2	ENST00000263579.4|DCPS|ENSG00000110063.4|decapping enzyme, scavenger
hg19_v2_chr4_-_164534657_164534701	0.260668	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr1_+_66999268_66999313	0.260592	SOX3_SOX2	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr11_+_128563652_128563689	0.260537	SOX3_SOX2	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr17_+_34842473_34842507	0.260412	SOX3_SOX2	ENST00000490126.2|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000225410.4|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3
hg19_v2_chr8_-_22014339_22014345	0.259404	SOX3_SOX2	ENST00000306317.2|LGI3|ENSG00000168481.4|leucine-rich repeat LGI family, member 3
hg19_v2_chr11_-_33183048_33183077	0.258752	SOX3_SOX2	ENST00000438862.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr10_+_82214052_82214111	0.258528	SOX3_SOX2	ENST00000372157.2|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000372164.3|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000372158.1|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000341863.6|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr3_+_9958758_9958848	0.257928	SOX3_SOX2	ENST00000383812.4|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000438091.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000295981.3|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000436503.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000403601.3|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000416074.2|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000455057.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C
hg19_v2_chr10_+_35484793_35484937	0.257632	SOX3_SOX2	ENST00000488741.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000474931.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000468236.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000344351.5|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000490511.1|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr19_+_56652556_56652641	0.257363	SOX3_SOX2	ENST00000337080.3|ZNF444|ENSG00000167685.10|zinc finger protein 444
hg19_v2_chr1_-_156265438_156265485	0.257078	SOX3_SOX2	ENST00000362007.1|C1orf85|ENSG00000198715.7|chromosome 1 open reading frame 85
hg19_v2_chr6_-_44225231_44225291	0.254932	SOX3_SOX2	ENST00000538577.1|SLC35B2|ENSG00000157593.12|solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 	ENST00000537814.1|SLC35B2|ENSG00000157593.12|solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 	ENST00000393810.1|SLC35B2|ENSG00000157593.12|solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 	ENST00000393812.3|SLC35B2|ENSG00000157593.12|solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
hg19_v2_chr4_-_110624564_110624739	0.254699	SOX3_SOX2	ENST00000352981.3|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000265164.2|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000505486.1|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase
hg19_v2_chr20_+_35090150_35090240	0.254419	SOX3_SOX2	ENST00000340491.4|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chr11_+_64949343_64949454	0.253969	SOX3_SOX2	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr14_+_93799556_93799577	0.253497	SOX3_SOX2	ENST00000256339.4|UNC79|ENSG00000133958.9|unc-79 homolog (C. elegans)
hg19_v2_chr5_+_55033845_55033870	0.253006	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr15_-_65281775_65281844	0.252835	SOX3_SOX2	ENST00000433215.2|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000558415.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000557795.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome)
hg19_v2_chrX_-_24665353_24665382	0.251899	SOX3_SOX2	ENST00000379144.2|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr6_+_134758827_134758863	0.251323	SOX3_SOX2	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr17_+_80416482_80416600	0.251307	SOX3_SOX2	ENST00000309794.11|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000345415.7|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000457415.3|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000584411.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000412079.2|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000577432.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr20_+_42875935_42876136	0.250971	SOX3_SOX2	ENST00000438466.1|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1 	ENST00000372952.3|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1 	ENST00000537864.1|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1 	ENST00000445952.1|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1
hg19_v2_chr4_-_143226979_143226990	0.250766	SOX3_SOX2	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr7_-_142207004_142207033	0.250471	SOX3_SOX2	ENST00000426318.2|TRBV10-2|ENSG00000229769.2|T cell receptor beta variable 10-2
hg19_v2_chr16_+_24741013_24741058	0.250411	SOX3_SOX2	ENST00000315183.7|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A 	ENST00000395799.3|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A
hg19_v2_chr5_+_130599701_130599716	0.250309	SOX3_SOX2	ENST00000395246.1|CDC42SE2|ENSG00000158985.9|CDC42 small effector 2
hg19_v2_chr20_-_30310797_30310901	0.249588	SOX3_SOX2	ENST00000422920.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr11_+_64949899_64949941	0.249406	SOX3_SOX2	ENST00000531068.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527699.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533909.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527323.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr18_-_5419797_5419829	0.249324	SOX3_SOX2	ENST00000542146.1|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3 	ENST00000427684.2|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3
hg19_v2_chr4_+_106629929_106629982	0.24922	SOX3_SOX2	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr11_+_237016_237032	0.248763	SOX3_SOX2	ENST00000352303.5|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr8_-_16043780_16043783	0.248491	SOX3_SOX2	ENST00000445506.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr5_-_137514333_137514367	0.248122	SOX3_SOX2	ENST00000411594.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000430331.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr14_+_95078714_95078739	0.24751	SOX3_SOX2	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr4_+_1873155_1873188	0.247231	SOX3_SOX2	ENST00000507820.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1 	ENST00000514045.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1
hg19_v2_chrX_-_75005054_75005094	0.245405	SOX3_SOX2	ENST00000373359.2|MAGEE2|ENSG00000186675.5|melanoma antigen family E, 2
hg19_v2_chr15_+_74165945_74165987	0.245232	SOX3_SOX2	ENST00000535547.2|TBC1D21|ENSG00000167139.4|TBC1 domain family, member 21 	ENST00000300504.2|TBC1D21|ENSG00000167139.4|TBC1 domain family, member 21 	ENST00000562056.1|TBC1D21|ENSG00000167139.4|TBC1 domain family, member 21
hg19_v2_chr1_+_54411715_54411760	0.2447	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr20_+_61448376_61448418	0.244229	SOX3_SOX2	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr13_-_27334879_27334930	0.243782	SOX3_SOX2	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr22_+_20104947_20105003	0.243461	SOX3_SOX2	ENST00000402752.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr17_+_7621045_7621079	0.24301	SOX3_SOX2	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr6_-_2962331_2962391	0.24249	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr9_+_6413317_6413418	0.242475	SOX3_SOX2	ENST00000276893.5|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 	ENST00000381373.3|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
hg19_v2_chr12_-_122296755_122296770	0.242413	SOX3_SOX2	ENST00000289004.4|HPD|ENSG00000158104.7|4-hydroxyphenylpyruvate dioxygenase
hg19_v2_chr10_-_127371675_127371716	0.24235	SOX3_SOX2	ENST00000532135.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000526819.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000368821.3|TEX36|ENSG00000175018.8|testis expressed 36
hg19_v2_chr10_+_71562180_71562291	0.241683	SOX3_SOX2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr11_+_20044096_20044116	0.241524	SOX3_SOX2	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr17_-_26301249_26301266	0.241111	SOX3_SOX2	ENST00000567574.1|RP11-218F4.1|ENSG00000260019.1|RP11-218F4.1
hg19_v2_chr15_-_73075964_73075980	0.23986	SOX3_SOX2	ENST00000563907.1|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr2_+_160590469_160590485	0.239694	SOX3_SOX2	ENST00000409591.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr15_+_72766651_72766680	0.239397	SOX3_SOX2	ENST00000379887.4|ARIH1|ENSG00000166233.8|ariadne RBR E3 ubiquitin protein ligase 1
hg19_v2_chr15_+_38544476_38544574	0.239311	SOX3_SOX2	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr13_+_106118592_106118619	0.239186	SOX3_SOX2	ENST00000375936.3|DAOA|ENSG00000182346.13|D-amino acid oxidase activator 	ENST00000329625.5|DAOA|ENSG00000182346.13|D-amino acid oxidase activator
hg19_v2_chr11_+_369804_369804	0.239067	SOX3_SOX2	ENST00000329962.6|B4GALNT4|ENSG00000182272.7|beta-1,4-N-acetyl-galactosaminyl transferase 4
hg19_v2_chr1_-_156051789_156051838	0.238979	SOX3_SOX2	ENST00000532414.2|MEX3A|ENSG00000254726.2|mex-3 RNA binding family member A
hg19_v2_chr6_+_43266063_43266097	0.238139	SOX3_SOX2	ENST00000372574.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr8_+_23104130_23104184	0.237928	SOX3_SOX2	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr14_+_35761580_35761679	0.237606	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chrX_+_46306624_46306709	0.23757	SOX3_SOX2	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr16_-_22385901_22385947	0.237427	SOX3_SOX2	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr7_-_142176790_142176842	0.237249	SOX3_SOX2	ENST00000390369.2|TRBV7-4|ENSG00000253409.1|T cell receptor beta variable 7-4 (gene/pseudogene)
hg19_v2_chr13_-_39612176_39612258	0.236398	SOX3_SOX2	ENST00000352251.3|PROSER1|ENSG00000120685.15|proline and serine rich 1 	ENST00000350125.3|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr18_-_61311485_61311532	0.235861	SOX3_SOX2	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr4_-_20985632_20985664	0.235161	SOX3_SOX2	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr4_+_113970772_113970885	0.234836	SOX3_SOX2	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr22_-_32651326_32651340	0.23447	SOX3_SOX2	ENST00000266086.4|SLC5A4|ENSG00000100191.4|solute carrier family 5 (glucose activated ion channel), member 4
hg19_v2_chr8_+_21777159_21777221	0.233227	SOX3_SOX2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr20_+_30697510_30697547	0.232793	SOX3_SOX2	ENST00000217315.5|TM9SF4|ENSG00000101337.11|transmembrane 9 superfamily protein member 4
hg19_v2_chr7_-_19813192_19813256	0.232786	SOX3_SOX2	ENST00000422233.1|TMEM196|ENSG00000173452.9|transmembrane protein 196 	ENST00000433641.1|TMEM196|ENSG00000173452.9|transmembrane protein 196
hg19_v2_chr19_+_10222189_10222214	0.232675	SOX3_SOX2	ENST00000321826.4|P2RY11|ENSG00000244165.1|purinergic receptor P2Y, G-protein coupled, 11
hg19_v2_chr14_-_71107921_71108085	0.232499	SOX3_SOX2	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr13_+_36920569_36920569	0.232188	SOX3_SOX2	ENST00000379848.2|SPG20OS|ENSG00000120664.6|SPG20 opposite strand
hg19_v2_chr11_+_113779704_113779727	0.231102	SOX3_SOX2	ENST00000537778.1|HTR3B|ENSG00000149305.2|5-hydroxytryptamine (serotonin) receptor 3B, ionotropic
hg19_v2_chr1_+_28285973_28285973	0.230657	SOX3_SOX2	ENST00000373884.5|XKR8|ENSG00000158156.7|XK, Kell blood group complex subunit-related family, member 8
hg19_v2_chr1_+_12834984_12834984	0.230452	SOX3_SOX2	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr19_+_11071652_11071682	0.230347	SOX3_SOX2	ENST00000344626.4|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENST00000429416.3|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
hg19_v2_chr6_-_7313381_7313458	0.230205	SOX3_SOX2	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr1_+_150122034_150122170	0.230037	SOX3_SOX2	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr20_-_30795511_30795594	0.229658	SOX3_SOX2	ENST00000246229.4|PLAGL2|ENSG00000126003.6|pleiomorphic adenoma gene-like 2
hg19_v2_chr4_+_141445311_141445332	0.228995	SOX3_SOX2	ENST00000323570.3|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2 	ENST00000511887.2|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr8_+_126442563_126442624	0.228547	SOX3_SOX2	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr8_+_67405438_67405450	0.22839	SOX3_SOX2	ENST00000305454.3|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr6_-_2972075_2972090	0.228153	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr19_-_58400372_58400411	0.227967	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr5_-_134871639_134871660	0.227396	SOX3_SOX2	ENST00000314744.4|NEUROG1|ENSG00000181965.4|neurogenin 1
hg19_v2_chr1_+_147374915_147374946	0.226802	SOX3_SOX2	ENST00000240986.4|GJA8|ENSG00000121634.4|gap junction protein, alpha 8, 50kDa
hg19_v2_chr3_-_71294304_71294332	0.226767	SOX3_SOX2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chrX_-_85302531_85302570	0.226657	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr2_-_163695128_163695158	0.225462	SOX3_SOX2	ENST00000332142.5|KCNH7|ENSG00000184611.7|potassium voltage-gated channel, subfamily H (eag-related), member 7
hg19_v2_chr19_+_11071973_11072001	0.22546	SOX3_SOX2	ENST00000590574.1|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
hg19_v2_chr6_+_132455118_132455176	0.224975	SOX3_SOX2	ENST00000458028.1|LINC01013|ENSG00000228495.1|long intergenic non-protein coding RNA 1013
hg19_v2_chr16_+_4545853_4545864	0.224441	SOX3_SOX2	ENST00000575129.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000398595.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000414777.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr1_+_84873913_84873958	0.224012	SOX3_SOX2	ENST00000370662.3|DNASE2B|ENSG00000137976.7|deoxyribonuclease II beta
hg19_v2_chr20_+_62795827_62795878	0.223966	SOX3_SOX2	ENST00000328439.1|MYT1|ENSG00000196132.7|myelin transcription factor 1 	ENST00000536311.1|MYT1|ENSG00000196132.7|myelin transcription factor 1
hg19_v2_chr19_+_56905024_56905180	0.223706	SOX3_SOX2	ENST00000591172.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000589888.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000587979.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000585659.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000593109.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head)
hg19_v2_chr15_+_33603147_33603187	0.223451	SOX3_SOX2	ENST00000415757.3|RYR3|ENSG00000198838.7|ryanodine receptor 3 	ENST00000389232.4|RYR3|ENSG00000198838.7|ryanodine receptor 3
hg19_v2_chr1_+_93544791_93544807	0.223272	SOX3_SOX2	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr6_-_46048116_46048132	0.223118	SOX3_SOX2	ENST00000185206.6|CLIC5|ENSG00000112782.11|chloride intracellular channel 5
hg19_v2_chr18_-_78005231_78005435	0.222886	SOX3_SOX2	ENST00000470488.2|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma 	ENST00000353265.3|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma
hg19_v2_chr22_+_50247449_50247515	0.222857	SOX3_SOX2	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr15_+_78730531_78730612	0.221795	SOX3_SOX2	ENST00000258886.8|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr22_+_21128167_21128167	0.220877	SOX3_SOX2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr4_-_157892498_157892546	0.220649	SOX3_SOX2	ENST00000502773.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr14_+_101299520_101299615	0.219874	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr11_+_13690200_13690244	0.219871	SOX3_SOX2	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr11_+_18154059_18154135	0.21981	SOX3_SOX2	ENST00000531264.1|MRGPRX3|ENSG00000179826.5|MAS-related GPR, member X3
hg19_v2_chr9_+_27109133_27109187	0.218443	SOX3_SOX2	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr19_+_42387228_42387310	0.218421	SOX3_SOX2	ENST00000354532.3|ARHGEF1|ENSG00000076928.13|Rho guanine nucleotide exchange factor (GEF) 1 	ENST00000599846.1|ARHGEF1|ENSG00000076928.13|Rho guanine nucleotide exchange factor (GEF) 1 	ENST00000347545.4|ARHGEF1|ENSG00000076928.13|Rho guanine nucleotide exchange factor (GEF) 1
hg19_v2_chr15_+_25200074_25200105	0.217441	SOX3_SOX2	ENST00000390687.4|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000584968.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000346403.6|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000554227.2|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N
hg19_v2_chr7_+_6144514_6144614	0.217023	SOX3_SOX2	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chr16_+_67063036_67063088	0.216981	SOX3_SOX2	ENST00000290858.6|CBFB|ENSG00000067955.9|core-binding factor, beta subunit 	ENST00000564034.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr14_-_102976135_102976160	0.216929	SOX3_SOX2	ENST00000560748.1|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr1_-_110155671_110155685	0.215719	SOX3_SOX2	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr12_+_104337515_104337574	0.215701	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr22_+_42372764_42372868	0.215637	SOX3_SOX2	ENST00000396426.3|SEPT3|ENSG00000100167.15|septin 3 	ENST00000406029.1|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr12_+_18891045_18891066	0.215577	SOX3_SOX2	ENST00000317658.3|CAPZA3|ENSG00000177938.3|capping protein (actin filament) muscle Z-line, alpha 3
hg19_v2_chr7_-_8302298_8302323	0.215512	SOX3_SOX2	ENST00000446305.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chrY_+_24636544_24636544	0.215354	SOX3_SOX2	ENST00000303728.1|PRY|ENSG00000169789.6|PTPN13-like, Y-linked 	ENST00000338793.2|PRY|ENSG00000169789.6|PTPN13-like, Y-linked
hg19_v2_chr3_+_111260856_111260948	0.214912	SOX3_SOX2	ENST00000352690.4|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr7_+_30068260_30068301	0.21397	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr5_-_150284351_150284443	0.213816	SOX3_SOX2	ENST00000427179.1|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr16_+_68279207_68279252	0.213263	SOX3_SOX2	ENST00000413021.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000565744.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000219345.5|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chr17_-_39471947_39471963	0.212837	SOX3_SOX2	ENST00000334202.3|KRTAP17-1|ENSG00000186860.3|keratin associated protein 17-1
hg19_v2_chr4_-_5890145_5890234	0.212691	SOX3_SOX2	ENST00000397890.2|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr17_-_43138463_43138505	0.211866	SOX3_SOX2	ENST00000310604.4|DCAKD|ENSG00000172992.7|dephospho-CoA kinase domain containing
hg19_v2_chr12_-_104350898_104351051	0.211383	SOX3_SOX2	ENST00000552940.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547975.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000549478.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546540.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546819.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000378090.4|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547945.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr8_+_22462532_22462597	0.21118	SOX3_SOX2	ENST00000389279.3|CCAR2|ENSG00000158941.12|cell cycle and apoptosis regulator 2
hg19_v2_chr1_-_115300579_115300590	0.20957	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr17_-_73150599_73150616	0.209367	SOX3_SOX2	ENST00000392566.2|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000581874.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr1_+_67632083_67632169	0.208816	SOX3_SOX2	ENST00000347310.5|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000371002.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr4_+_699610_699732	0.208389	SOX3_SOX2	ENST00000521023.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr17_-_2996290_2996290	0.208084	SOX3_SOX2	ENST00000331459.1|OR1D2|ENSG00000184166.1|olfactory receptor, family 1, subfamily D, member 2
hg19_v2_chr19_-_51537982_51537997	0.207278	SOX3_SOX2	ENST00000525263.1|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12
hg19_v2_chr17_-_39677971_39678038	0.20721	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr22_+_17602467_17602489	0.207172	SOX3_SOX2	ENST00000441544.1|AC006946.15|ENSG00000235478.1|Uncharacterized protein
hg19_v2_chr10_+_97759848_97759883	0.207167	SOX3_SOX2	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr11_-_64545941_64545958	0.205482	SOX3_SOX2	ENST00000377387.1|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr17_-_17740287_17740316	0.205315	SOX3_SOX2	ENST00000355815.4|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1 	ENST00000261646.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr8_-_6420777_6420784	0.205289	SOX3_SOX2	ENST00000415216.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr1_-_169555779_169555826	0.20526	SOX3_SOX2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr11_-_9286921_9286937	0.204824	SOX3_SOX2	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr10_-_70231639_70231879	0.204616	SOX3_SOX2	ENST00000551118.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000358410.3|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399180.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399179.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2
hg19_v2_chr11_-_45939565_45939606	0.204409	SOX3_SOX2	ENST00000525192.1|PEX16|ENSG00000121680.11|peroxisomal biogenesis factor 16 	ENST00000378750.5|PEX16|ENSG00000121680.11|peroxisomal biogenesis factor 16
hg19_v2_chr1_-_9811600_9811639	0.203957	SOX3_SOX2	ENST00000435891.1|CLSTN1|ENSG00000171603.12|calsyntenin 1
hg19_v2_chr2_-_231825668_231825781	0.203449	SOX3_SOX2	ENST00000392039.2|GPR55|ENSG00000135898.5|G protein-coupled receptor 55
hg19_v2_chr4_+_39046615_39046680	0.203195	SOX3_SOX2	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr1_-_167883353_167883453	0.202674	SOX3_SOX2	ENST00000545172.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr20_-_35492048_35492118	0.202621	SOX3_SOX2	ENST00000237536.4|SOGA1|ENSG00000149639.10|suppressor of glucose, autophagy associated 1
hg19_v2_chr1_+_54411995_54412063	0.201523	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr15_+_63796779_63796863	0.201253	SOX3_SOX2	ENST00000561442.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000560070.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000540797.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000380324.3|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000268049.7|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000536001.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000539772.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3
hg19_v2_chr21_+_45079409_45079452	0.200329	SOX3_SOX2	ENST00000340648.4|RRP1B|ENSG00000160208.11|ribosomal RNA processing 1B
hg19_v2_chr8_-_110346614_110346722	0.200317	SOX3_SOX2	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr14_+_23845995_23846017	0.200302	SOX3_SOX2	ENST00000359320.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr2_-_208489275_208489346	0.199526	SOX3_SOX2	ENST00000272839.3|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000426075.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chr20_+_39765581_39765646	0.199409	SOX3_SOX2	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr1_+_214161854_214161892	0.198593	SOX3_SOX2	ENST00000435016.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr3_+_57094469_57094469	0.198502	SOX3_SOX2	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr6_+_125540951_125540991	0.198439	SOX3_SOX2	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr5_+_121647924_121647940	0.198345	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr1_+_244998918_244998975	0.198191	SOX3_SOX2	ENST00000366528.3|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr19_+_10982189_10982272	0.197051	SOX3_SOX2	ENST00000327064.4|CARM1|ENSG00000142453.7|coactivator-associated arginine methyltransferase 1 	ENST00000588947.1|CARM1|ENSG00000142453.7|coactivator-associated arginine methyltransferase 1
hg19_v2_chr3_+_35721106_35721127	0.196616	SOX3_SOX2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr14_+_64971292_64971415	0.196085	SOX3_SOX2	ENST00000358738.3|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1 	ENST00000394712.2|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr11_-_105948040_105948082	0.195148	SOX3_SOX2	ENST00000534815.1|KBTBD3|ENSG00000182359.10|kelch repeat and BTB (POZ) domain containing 3
hg19_v2_chr19_+_21106081_21106207	0.194975	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr9_-_117692697_117692744	0.19396	SOX3_SOX2	ENST00000223795.2|TNFSF8|ENSG00000106952.3|tumor necrosis factor (ligand) superfamily, member 8
hg19_v2_chr4_+_124317940_124317987	0.193925	SOX3_SOX2	ENST00000505319.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila) 	ENST00000339241.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr6_-_128222103_128222226	0.193886	SOX3_SOX2	ENST00000434358.1|THEMIS|ENSG00000172673.6|thymocyte selection associated 	ENST00000543064.1|THEMIS|ENSG00000172673.6|thymocyte selection associated 	ENST00000368248.2|THEMIS|ENSG00000172673.6|thymocyte selection associated
hg19_v2_chr10_+_102505468_102505546	0.193753	SOX3_SOX2	ENST00000361791.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000355243.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000428433.1|PAX2|ENSG00000075891.17|paired box 2 	ENST00000370296.2|PAX2|ENSG00000075891.17|paired box 2
hg19_v2_chr3_-_167813132_167813183	0.193634	SOX3_SOX2	ENST00000309027.4|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr12_-_31478428_31478469	0.193262	SOX3_SOX2	ENST00000543615.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr6_-_134861089_134861168	0.193134	SOX3_SOX2	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr15_+_93447675_93447703	0.193054	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr9_-_117880477_117880536	0.192816	SOX3_SOX2	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr19_-_47349395_47349412	0.19217	SOX3_SOX2	ENST00000597020.1|AP2S1|ENSG00000042753.7|adaptor-related protein complex 2, sigma 1 subunit
hg19_v2_chr2_-_9770706_9770753	0.1921	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr6_+_30594619_30594665	0.191873	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr4_+_159593271_159593295	0.191838	SOX3_SOX2	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr6_+_168418553_168418581	0.191805	SOX3_SOX2	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr11_-_62689046_62689279	0.190655	SOX3_SOX2	ENST00000306960.3|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1 	ENST00000543973.1|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1
hg19_v2_chr1_+_156052354_156052380	0.190557	SOX3_SOX2	ENST00000368301.2|LMNA|ENSG00000160789.15|lamin A/C
hg19_v2_chr9_-_23825956_23826063	0.190439	SOX3_SOX2	ENST00000397312.2|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr6_+_89790459_89790479	0.19013	SOX3_SOX2	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr1_+_200842083_200842116	0.190065	SOX3_SOX2	ENST00000304244.2|GPR25|ENSG00000170128.2|G protein-coupled receptor 25
hg19_v2_chrX_+_153626708_153626730	0.189899	SOX3_SOX2	ENST00000436473.1|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000344746.4|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000458500.1|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr11_-_9336234_9336327	0.189888	SOX3_SOX2	ENST00000528080.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr10_-_97321112_97321163	0.189679	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr19_-_22379753_22379753	0.189308	SOX3_SOX2	ENST00000397121.2|ZNF676|ENSG00000196109.6|zinc finger protein 676
hg19_v2_chr9_+_133710453_133710453	0.188881	SOX3_SOX2	ENST00000318560.5|ABL1|ENSG00000097007.13|c-abl oncogene 1, non-receptor tyrosine kinase
hg19_v2_chr11_+_59824060_59824106	0.18868	SOX3_SOX2	ENST00000395032.2|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) 	ENST00000358152.2|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr5_-_179780312_179780387	0.18846	SOX3_SOX2	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr16_+_30406721_30406820	0.188214	SOX3_SOX2	ENST00000320159.2|ZNF48|ENSG00000180035.6|zinc finger protein 48
hg19_v2_chr6_+_97372596_97372644	0.188151	SOX3_SOX2	ENST00000369261.4|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chrX_+_105937068_105937091	0.18797	SOX3_SOX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr1_+_202385953_202385994	0.187572	SOX3_SOX2	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr19_+_58790314_58790358	0.187521	SOX3_SOX2	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr8_+_91803695_91803778	0.187286	SOX3_SOX2	ENST00000417640.2|NECAB1|ENSG00000123119.7|N-terminal EF-hand calcium binding protein 1
hg19_v2_chrX_-_69509738_69509829	0.186935	SOX3_SOX2	ENST00000374454.1|PDZD11|ENSG00000120509.6|PDZ domain containing 11 	ENST00000239666.4|PDZD11|ENSG00000120509.6|PDZ domain containing 11
hg19_v2_chr12_-_10875831_10876025	0.186865	SOX3_SOX2	ENST00000279550.7|YBX3|ENSG00000060138.8|Y box binding protein 3 	ENST00000228251.4|YBX3|ENSG00000060138.8|Y box binding protein 3
hg19_v2_chr12_-_10588539_10588600	0.185718	SOX3_SOX2	ENST00000381902.2|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000381901.1|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000539033.1|NKG2-E|ENSG00000255641.1|Uncharacterized protein
hg19_v2_chr4_-_174256276_174256303	0.185686	SOX3_SOX2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr20_+_58713514_58713554	0.18548	SOX3_SOX2	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chrX_-_138724994_138725023	0.185364	SOX3_SOX2	ENST00000536274.1|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr6_-_41040268_41040353	0.185304	SOX3_SOX2	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr12_+_104359641_104359689	0.184075	SOX3_SOX2	ENST00000537100.1|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr17_+_43971643_43971748	0.184001	SOX3_SOX2	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr3_+_130613001_130613078	0.183893	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr9_+_27524283_27524312	0.183208	SOX3_SOX2	ENST00000276943.2|IFNK|ENSG00000147896.3|interferon, kappa
hg19_v2_chr9_-_23826298_23826344	0.183158	SOX3_SOX2	ENST00000380117.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr18_+_9885760_9885780	0.183098	SOX3_SOX2	ENST00000536353.2|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa) 	ENST00000584255.1|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chrY_-_24242154_24242154	0.183018	SOX3_SOX2	ENST00000303804.1|PRY2|ENSG00000169807.6|PTPN13-like, Y-linked 2 	ENST00000341740.2|PRY2|ENSG00000169807.6|PTPN13-like, Y-linked 2
hg19_v2_chrX_+_71401570_71401644	0.18254	SOX3_SOX2	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr12_+_122326662_122326768	0.182296	SOX3_SOX2	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr12_-_50790267_50790405	0.18208	SOX3_SOX2	ENST00000327337.5|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A 	ENST00000543111.1|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A
hg19_v2_chr18_+_13726645_13726768	0.182049	SOX3_SOX2	ENST00000543302.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000383314.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000535051.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000592764.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000591746.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase
hg19_v2_chr1_-_116383738_116383752	0.18175	SOX3_SOX2	ENST00000320238.3|NHLH2|ENSG00000177551.5|nescient helix loop helix 2
hg19_v2_chr14_+_24521202_24521267	0.181744	SOX3_SOX2	ENST00000334420.7|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B 	ENST00000342740.5|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B
hg19_v2_chr6_+_30687978_30688141	0.181157	SOX3_SOX2	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr19_-_38746979_38747050	0.18055	SOX3_SOX2	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr4_+_24797085_24797180	0.180502	SOX3_SOX2	ENST00000382120.3|SOD3|ENSG00000109610.5|superoxide dismutase 3, extracellular
hg19_v2_chr3_+_186435137_186435158	0.180104	SOX3_SOX2	ENST00000447445.1|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr5_+_66300446_66300463	0.180043	SOX3_SOX2	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr14_-_23451845_23451856	0.180003	SOX3_SOX2	ENST00000262713.2|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr12_-_71003568_71003629	0.179914	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr18_+_11751493_11751507	0.179113	SOX3_SOX2	ENST00000269162.5|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr6_-_133055815_133055834	0.178941	SOX3_SOX2	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr19_-_21950332_21950356	0.178701	SOX3_SOX2	ENST00000598026.1|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr7_-_32931387_32931509	0.178522	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr8_+_11660120_11660221	0.177772	SOX3_SOX2	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr12_-_99548524_99548550	0.177393	SOX3_SOX2	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr20_-_30458019_30458083	0.176769	SOX3_SOX2	ENST00000486996.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15 	ENST00000398084.2|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr1_-_1243252_1243318	0.176365	SOX3_SOX2	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr3_+_123813509_123813528	0.175941	SOX3_SOX2	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr13_+_28194873_28194954	0.175917	SOX3_SOX2	ENST00000302979.3|POLR1D|ENSG00000186184.11|polymerase (RNA) I polypeptide D, 16kDa
hg19_v2_chr6_+_88054530_88054567	0.175733	SOX3_SOX2	ENST00000388923.4|C6orf163|ENSG00000203872.6|chromosome 6 open reading frame 163
hg19_v2_chr6_-_41254403_41254457	0.175212	SOX3_SOX2	ENST00000589614.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000334475.6|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000591620.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000244709.4|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1
hg19_v2_chr5_-_150284532_150284549	0.175061	SOX3_SOX2	ENST00000394226.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000446148.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000274599.5|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000418587.2|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr13_+_30002741_30002776	0.174695	SOX3_SOX2	ENST00000380808.2|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr17_-_16472483_16472533	0.174487	SOX3_SOX2	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr16_+_1359511_1359804	0.174351	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chr5_+_85913721_85913790	0.174338	SOX3_SOX2	ENST00000247655.3|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000509578.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000515763.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc
hg19_v2_chr8_+_94752349_94752349	0.173945	SOX3_SOX2	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chr2_+_168725458_168725458	0.173558	SOX3_SOX2	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr4_+_153857468_153857520	0.173554	SOX3_SOX2	ENST00000511601.1|FHDC1|ENSG00000137460.4|FH2 domain containing 1
hg19_v2_chr16_-_18911366_18911366	0.17349	SOX3_SOX2	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr2_-_151344172_151344243	0.173328	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr16_-_11367452_11367491	0.173239	SOX3_SOX2	ENST00000327157.2|PRM3|ENSG00000178257.2|protamine 3
hg19_v2_chr20_-_30458491_30458550	0.17319	SOX3_SOX2	ENST00000339738.5|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr18_+_9885934_9885943	0.173089	SOX3_SOX2	ENST00000357775.5|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr9_-_127269661_127269719	0.172996	SOX3_SOX2	ENST00000373588.4|NR5A1|ENSG00000136931.5|nuclear receptor subfamily 5, group A, member 1
hg19_v2_chr3_-_52002403_52002433	0.172671	SOX3_SOX2	ENST00000490063.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000468324.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000497653.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000484633.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr2_+_153191706_153191751	0.171524	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr17_-_73389854_73390114	0.171378	SOX3_SOX2	ENST00000578961.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2 	ENST00000392564.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2 	ENST00000582582.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2
hg19_v2_chr5_-_74062930_74062980	0.171093	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr14_+_22554680_22554691	0.170217	SOX3_SOX2	ENST00000390451.2|TRAV23DV6|ENSG00000211803.2|T cell receptor alpha variable 23/delta variable 6
hg19_v2_chr14_-_23904861_23904927	0.168982	SOX3_SOX2	ENST00000355349.3|MYH7|ENSG00000092054.12|myosin, heavy chain 7, cardiac muscle, beta
hg19_v2_chr15_-_74043816_74043816	0.168977	SOX3_SOX2	ENST00000379822.4|C15orf59|ENSG00000205363.4|chromosome 15 open reading frame 59
hg19_v2_chr15_-_50647347_50647366	0.168209	SOX3_SOX2	ENST00000220429.8|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000429662.2|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr1_-_151032040_151032125	0.167625	SOX3_SOX2	ENST00000540998.1|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1 	ENST00000357235.5|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1
hg19_v2_chr6_-_28303901_28303975	0.16738	SOX3_SOX2	ENST00000439158.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000446474.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000414431.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000344279.6|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000453745.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr5_+_95187934_95187939	0.167024	SOX3_SOX2	ENST00000357880.3|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27 	ENST00000436592.1|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27
hg19_v2_chr3_-_9005118_9005186	0.166807	SOX3_SOX2	ENST00000264926.2|RAD18|ENSG00000070950.5|RAD18 homolog (S. cerevisiae)
hg19_v2_chr19_+_20011775_20011870	0.166709	SOX3_SOX2	ENST00000592245.1|AC007204.2|ENSG00000267268.1|AC007204.2	ENST00000592160.1|ZNF93|ENSG00000184635.9|zinc finger protein 93 	ENST00000343769.5|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chrX_+_153626571_153626627	0.166569	SOX3_SOX2	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr11_+_32112431_32112454	0.166549	SOX3_SOX2	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr3_-_57583052_57583079	0.166493	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr20_+_30795664_30795743	0.166432	SOX3_SOX2	ENST00000375749.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000375730.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000539210.1|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1
hg19_v2_chrX_+_44732757_44732860	0.166103	SOX3_SOX2	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr5_+_140710061_140710252	0.166077	SOX3_SOX2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr1_+_150039369_150039444	0.165908	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr3_-_142608001_142608053	0.165667	SOX3_SOX2	ENST00000295992.3|PCOLCE2|ENSG00000163710.3|procollagen C-endopeptidase enhancer 2
hg19_v2_chr5_+_49962495_49962577	0.16488	SOX3_SOX2	ENST00000515175.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr17_-_73389737_73389765	0.16427	SOX3_SOX2	ENST00000392563.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2
hg19_v2_chr12_-_6716534_6716557	0.163991	SOX3_SOX2	ENST00000544484.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000309577.6|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000357008.2|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr8_+_85095769_85095793	0.16253	SOX3_SOX2	ENST00000518566.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr2_+_239756671_239756732	0.162489	SOX3_SOX2	ENST00000448943.2|TWIST2|ENSG00000233608.2|twist family bHLH transcription factor 2
hg19_v2_chr15_+_71389281_71389306	0.16208	SOX3_SOX2	ENST00000355327.3|THSD4|ENSG00000187720.10|thrombospondin, type I, domain containing 4
hg19_v2_chr18_+_18822185_18822213	0.161759	SOX3_SOX2	ENST00000424526.1|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like 	ENST00000400483.4|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like 	ENST00000431264.1|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr6_-_127664475_127664543	0.16173	SOX3_SOX2	ENST00000474289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000534442.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000368289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000525745.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000430841.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr19_+_10713112_10713198	0.161726	SOX3_SOX2	ENST00000590382.1|SLC44A2|ENSG00000129353.10|solute carrier family 44 (choline transporter), member 2 	ENST00000407327.4|SLC44A2|ENSG00000129353.10|solute carrier family 44 (choline transporter), member 2
hg19_v2_chr5_+_59726565_59726565	0.161474	SOX3_SOX2	ENST00000412930.2|FKSG52|ENSG00000224838.2|FKSG52
hg19_v2_chr5_+_172386419_172386480	0.161365	SOX3_SOX2	ENST00000265100.2|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1 	ENST00000519239.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr11_-_82997371_82997416	0.161347	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr5_+_69321074_69321200	0.161106	SOX3_SOX2	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr18_+_18822216_18822319	0.161099	SOX3_SOX2	ENST00000269218.6|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr7_+_12727250_12727265	0.161045	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr10_+_82213904_82213922	0.160968	SOX3_SOX2	ENST00000429989.3|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr16_+_20499024_20499024	0.160853	SOX3_SOX2	ENST00000593357.1|AC137056.1|ENSG00000267824.1|Uncharacterized protein; cDNA FLJ34659 fis, clone KIDNE2018863
hg19_v2_chr16_+_72459838_72459857	0.160612	SOX3_SOX2	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr16_-_75299845_75299883	0.16059	SOX3_SOX2	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr18_+_12703002_12703066	0.160538	SOX3_SOX2	ENST00000590217.1|PSMG2|ENSG00000128789.16|proteasome (prosome, macropain) assembly chaperone 2
hg19_v2_chr12_+_51818749_51818901	0.160105	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr6_+_28092338_28092412	0.159571	SOX3_SOX2	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr5_-_176900610_176900742	0.158846	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr19_+_13229126_13229151	0.158532	SOX3_SOX2	ENST00000292431.4|NACC1|ENSG00000160877.5|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
hg19_v2_chr22_+_31742875_31742875	0.157992	SOX3_SOX2	ENST00000504184.2|AC005003.1|ENSG00000213888.2|CDNA FLJ20464 fis, clone KAT06158; HCG1777549; Uncharacterized protein
hg19_v2_chr15_+_77223960_77223994	0.156966	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr2_-_183106641_183106754	0.155851	SOX3_SOX2	ENST00000346717.4|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr22_-_26875345_26875357	0.15584	SOX3_SOX2	ENST00000398141.1|HPS4|ENSG00000100099.16|Hermansky-Pudlak syndrome 4
hg19_v2_chr6_+_101846664_101846702	0.155368	SOX3_SOX2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr17_+_72581057_72581057	0.155193	SOX3_SOX2	ENST00000392620.1|C17orf77|ENSG00000182352.4|chromosome 17 open reading frame 77
hg19_v2_chrX_-_132352373_132352384	0.15506	SOX3_SOX2	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr12_+_113344582_113344745	0.154089	SOX3_SOX2	ENST00000202917.5|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000445409.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000452357.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr10_+_89622870_89622870	0.154074	SOX3_SOX2	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr20_+_55099542_55099542	0.153617	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr18_+_55018044_55018044	0.153526	SOX3_SOX2	ENST00000324000.3|ST8SIA3|ENSG00000177511.5|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
hg19_v2_chr9_+_36036430_36036430	0.153439	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chrX_-_11284095_11284131	0.153361	SOX3_SOX2	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr12_+_48722763_48722763	0.152768	SOX3_SOX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr22_-_50746027_50746082	0.152606	SOX3_SOX2	ENST00000425954.1|PLXNB2|ENSG00000196576.10|plexin B2 	ENST00000449103.1|PLXNB2|ENSG00000196576.10|plexin B2
hg19_v2_chr16_+_30662360_30662511	0.151974	SOX3_SOX2	ENST00000542965.2|PRR14|ENSG00000156858.7|proline rich 14
hg19_v2_chr1_-_78149041_78149142	0.151688	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr5_+_65018017_65018088	0.15139	SOX3_SOX2	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr17_-_73127778_73127821	0.15085	SOX3_SOX2	ENST00000578407.1|NT5C|ENSG00000125458.2|5', 3'-nucleotidase, cytosolic
hg19_v2_chr2_-_175869936_175869954	0.150582	SOX3_SOX2	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr11_-_117747327_117747384	0.150575	SOX3_SOX2	ENST00000584230.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000527429.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000584394.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000532984.1|FXYD6-FXYD2|ENSG00000255245.3|FXYD6-FXYD2 readthrough
hg19_v2_chr1_+_43766642_43766667	0.150199	SOX3_SOX2	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr17_-_20946338_20946369	0.150112	SOX3_SOX2	ENST00000261497.4|USP22|ENSG00000124422.7|ubiquitin specific peptidase 22
hg19_v2_chr1_+_231297798_231297858	0.149906	SOX3_SOX2	ENST00000444294.3|TRIM67|ENSG00000119283.11|tripartite motif containing 67
hg19_v2_chr12_-_92539614_92539673	0.149717	SOX3_SOX2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr9_-_130616915_130616944	0.149583	SOX3_SOX2	ENST00000344849.3|ENG|ENSG00000106991.9|endoglin
hg19_v2_chrX_+_115301975_115302005	0.14954	SOX3_SOX2	ENST00000371906.4|AGTR2|ENSG00000180772.6|angiotensin II receptor, type 2
hg19_v2_chr19_+_36705504_36705644	0.148366	SOX3_SOX2	ENST00000456324.1|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr7_-_100061869_100061900	0.147983	SOX3_SOX2	ENST00000332375.3|C7orf61|ENSG00000185955.4|chromosome 7 open reading frame 61
hg19_v2_chr3_-_69171739_69171754	0.147475	SOX3_SOX2	ENST00000489031.1|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr4_+_54243862_54243874	0.147202	SOX3_SOX2	ENST00000306932.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr6_+_44355257_44355315	0.147061	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr13_+_26828275_26828312	0.146872	SOX3_SOX2	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr19_-_41985048_41985051	0.146719	SOX3_SOX2	ENST00000599801.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000595063.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000598215.1|AC011526.1|ENSG00000267107.2|AC011526.1
hg19_v2_chr20_-_17511962_17512033	0.146538	SOX3_SOX2	ENST00000377873.3|BFSP1|ENSG00000125864.7|beaded filament structural protein 1, filensin
hg19_v2_chr7_+_102036798_102036882	0.146403	SOX3_SOX2	ENST00000397912.3|PRKRIP1|ENSG00000128563.9|PRKR interacting protein 1 (IL11 inducible) 	ENST00000354783.4|PRKRIP1|ENSG00000128563.9|PRKR interacting protein 1 (IL11 inducible)
hg19_v2_chr3_-_52719810_52719883	0.146318	SOX3_SOX2	ENST00000424867.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000394830.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000431678.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000450271.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr11_+_63754294_63754323	0.145538	SOX3_SOX2	ENST00000543988.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr6_+_10556215_10556240	0.145503	SOX3_SOX2	ENST00000316170.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr1_+_32084641_32084641	0.145077	SOX3_SOX2	ENST00000373706.5|HCRTR1|ENSG00000121764.7|hypocretin (orexin) receptor 1
hg19_v2_chr19_+_10765699_10765728	0.14492	SOX3_SOX2	ENST00000590009.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr20_+_23331373_23331480	0.144891	SOX3_SOX2	ENST00000254998.2|NXT1|ENSG00000132661.3|NTF2-like export factor 1
hg19_v2_chr6_+_119215308_119215391	0.144779	SOX3_SOX2	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr10_+_97803151_97803348	0.144473	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr12_+_4829507_4829601	0.144194	SOX3_SOX2	ENST00000252318.2|GALNT8|ENSG00000130035.2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)
hg19_v2_chrX_+_102631844_102632109	0.144189	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr2_+_160568978_160569064	0.144106	SOX3_SOX2	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr1_-_235292250_235292261	0.143591	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr1_-_145827015_145827103	0.143445	SOX3_SOX2	ENST00000534502.1|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000313835.9|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000454423.3|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A
hg19_v2_chr5_-_171881491_171881554	0.143236	SOX3_SOX2	ENST00000311601.5|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr3_-_69171708_69171723	0.142715	SOX3_SOX2	ENST00000420581.2|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr11_+_12695944_12695989	0.142595	SOX3_SOX2	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr11_+_114271251_114271300	0.142519	SOX3_SOX2	ENST00000375490.5|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr6_-_127664736_127664773	0.142432	SOX3_SOX2	ENST00000368291.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000309620.9|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454859.3|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr19_+_50194360_50194410	0.141998	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chr6_-_128841503_128841870	0.141842	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr3_-_126373929_126373998	0.141692	SOX3_SOX2	ENST00000523403.1|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3 	ENST00000524230.2|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3
hg19_v2_chr3_+_9958870_9959000	0.141385	SOX3_SOX2	ENST00000413608.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C
hg19_v2_chr16_-_75299884_75299919	0.141189	SOX3_SOX2	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr17_-_15469590_15469590	0.14059	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr2_+_69240415_69240438	0.140263	SOX3_SOX2	ENST00000409829.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr18_-_64271363_64271390	0.140009	SOX3_SOX2	ENST00000262150.2|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr1_+_196743912_196743925	0.139957	SOX3_SOX2	ENST00000367425.4|CFHR3|ENSG00000116785.9|complement factor H-related 3
hg19_v2_chr6_+_132455526_132455551	0.139867	SOX3_SOX2	ENST00000443303.1|LINC01013|ENSG00000228495.1|long intergenic non-protein coding RNA 1013
hg19_v2_chr17_-_8079632_8079639	0.139405	SOX3_SOX2	ENST00000431792.2|TMEM107|ENSG00000179029.10|transmembrane protein 107
hg19_v2_chr10_-_72545151_72545158	0.139345	SOX3_SOX2	ENST00000299290.1|TBATA|ENSG00000166220.8|thymus, brain and testes associated
hg19_v2_chr2_+_114647504_114647557	0.138873	SOX3_SOX2	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr6_-_111136513_111136525	0.138869	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr6_-_31509714_31509795	0.138814	SOX3_SOX2	ENST00000456662.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000431908.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000456976.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000428450.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000453105.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000418897.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000415382.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000449074.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000419020.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000428098.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr17_+_59489112_59489112	0.138236	SOX3_SOX2	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chr14_+_72052983_72053003	0.138116	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr4_+_699537_699600	0.13797	SOX3_SOX2	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr12_-_96793844_96793855	0.137906	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr10_-_735553_735683	0.136318	SOX3_SOX2	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr7_-_75988321_75988348	0.136106	SOX3_SOX2	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chrX_-_53711064_53711132	0.135715	SOX3_SOX2	ENST00000342160.3|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 	ENST00000446750.1|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr2_+_203241531_203241659	0.135428	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr9_-_130617029_130617040	0.135126	SOX3_SOX2	ENST00000373203.4|ENG|ENSG00000106991.9|endoglin
hg19_v2_chr15_+_69857515_69857531	0.135085	SOX3_SOX2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr10_-_24770632_24770632	0.135013	SOX3_SOX2	ENST00000596413.1|AL353583.1|ENSG00000269879.1|AL353583.1
hg19_v2_chr18_+_9885961_9885992	0.134372	SOX3_SOX2	ENST00000306084.6|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr11_-_126081532_126081587	0.133562	SOX3_SOX2	ENST00000533628.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000298317.4|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000532674.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4
hg19_v2_chr7_+_95115210_95115217	0.133484	SOX3_SOX2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr2_+_166326157_166326216	0.132809	SOX3_SOX2	ENST00000421875.1|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3 	ENST00000314499.7|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3 	ENST00000409664.1|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr2_+_120517174_120517207	0.132719	SOX3_SOX2	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr7_-_14942944_14942997	0.132334	SOX3_SOX2	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr19_-_36233332_36233360	0.132249	SOX3_SOX2	ENST00000592537.1|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1 	ENST00000246532.1|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1 	ENST00000344990.3|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1 	ENST00000588992.1|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1
hg19_v2_chr6_-_42016385_42016706	0.132227	SOX3_SOX2	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr1_-_173174681_173174702	0.131975	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr12_-_69080590_69080644	0.131713	SOX3_SOX2	ENST00000433116.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2	ENST00000500695.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2
hg19_v2_chr2_-_197791441_197791525	0.131617	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr14_+_22670455_22670477	0.13154	SOX3_SOX2	ENST00000390460.1|TRAV26-2|ENSG00000211812.1|T cell receptor alpha variable 26-2
hg19_v2_chr21_-_37270727_37270727	0.131527	SOX3_SOX2	ENST00000599809.1|FKSG68|ENSG00000267812.1|FKSG68
hg19_v2_chr12_-_48213568_48213695	0.131424	SOX3_SOX2	ENST00000080059.7|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000354334.3|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000430670.1|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000552960.1|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000440293.1|HDAC7|ENSG00000061273.13|histone deacetylase 7
hg19_v2_chr12_-_56615693_56615758	0.130751	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr19_+_17326141_17326178	0.13019	SOX3_SOX2	ENST00000445667.2|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000263897.5|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr15_-_70994612_70994652	0.129876	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr2_-_74781061_74781088	0.129493	SOX3_SOX2	ENST00000264094.3|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000393937.2|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000409986.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr17_-_18950950_18950950	0.128515	SOX3_SOX2	ENST00000284154.5|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr12_-_46766577_46766650	0.128024	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr12_-_52887034_52887049	0.127741	SOX3_SOX2	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr20_-_49547731_49547753	0.127725	SOX3_SOX2	ENST00000396029.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr11_-_89224638_89224653	0.127711	SOX3_SOX2	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr18_-_13915530_13915540	0.127406	SOX3_SOX2	ENST00000327606.3|MC2R|ENSG00000185231.4|melanocortin 2 receptor (adrenocorticotropic hormone)
hg19_v2_chr9_-_21385396_21385396	0.126711	SOX3_SOX2	ENST00000380206.2|IFNA2|ENSG00000188379.5|interferon, alpha 2
hg19_v2_chr1_-_935519_935552	0.126346	SOX3_SOX2	ENST00000428771.2|HES4|ENSG00000188290.6|hes family bHLH transcription factor 4
hg19_v2_chr19_-_36304201_36304201	0.126282	SOX3_SOX2	ENST00000301175.3|PRODH2|ENSG00000250799.5|proline dehydrogenase (oxidase) 2
hg19_v2_chr5_-_9712312_9712490	0.126003	SOX3_SOX2	ENST00000506620.1|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1 	ENST00000606744.1|CTD-2143L24.1|ENSG00000249781.2|CTD-2143L24.1	ENST00000514078.1|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1
hg19_v2_chr5_-_83680192_83680209	0.125824	SOX3_SOX2	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr20_+_3870024_3870072	0.125589	SOX3_SOX2	ENST00000610179.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr12_-_6716569_6716642	0.125504	SOX3_SOX2	ENST00000544040.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000545942.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr16_-_19533404_19533467	0.125001	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr19_-_16582815_16582896	0.124768	SOX3_SOX2	ENST00000455140.2|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000248070.6|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000594975.1|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1
hg19_v2_chr15_-_74659978_74660081	0.124713	SOX3_SOX2	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr12_-_114211444_114211468	0.124578	SOX3_SOX2	ENST00000510694.2|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000550223.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr3_-_33700933_33701085	0.124419	SOX3_SOX2	ENST00000480013.1|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr11_+_114168085_114168222	0.124174	SOX3_SOX2	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr15_+_77224045_77224121	0.124135	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr8_-_7332604_7332604	0.124046	SOX3_SOX2	ENST00000316169.2|DEFB104B|ENSG00000177023.2|defensin, beta 104B
hg19_v2_chr11_-_57417405_57417423	0.123897	SOX3_SOX2	ENST00000524669.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila) 	ENST00000300022.3|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr13_+_34392185_34392191	0.123732	SOX3_SOX2	ENST00000380071.3|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr17_-_73505961_73505976	0.12362	SOX3_SOX2	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr11_-_67981295_67981334	0.123584	SOX3_SOX2	ENST00000405515.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr17_-_79829190_79829282	0.123359	SOX3_SOX2	ENST00000581876.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000584461.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000583868.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000400721.4|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000269321.7|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr7_-_142583506_142583510	0.122912	SOX3_SOX2	ENST00000359396.3|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr9_-_136024721_136024827	0.12281	SOX3_SOX2	ENST00000393160.3|RALGDS|ENSG00000160271.10|ral guanine nucleotide dissociation stimulator
hg19_v2_chr2_-_55276320_55276334	0.122027	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr14_+_24779340_24779371	0.121964	SOX3_SOX2	ENST00000533293.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2 	ENST00000543919.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2
hg19_v2_chr19_+_11466062_11466159	0.121551	SOX3_SOX2	ENST00000251473.5|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000591329.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000586380.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr13_+_113030658_113030702	0.121375	SOX3_SOX2	ENST00000414180.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7 	ENST00000443541.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr11_+_55944094_55944094	0.120812	SOX3_SOX2	ENST00000312298.1|OR5J2|ENSG00000174957.1|olfactory receptor, family 5, subfamily J, member 2
hg19_v2_chr6_+_43265992_43266003	0.120771	SOX3_SOX2	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr6_-_151712673_151712709	0.12072	SOX3_SOX2	ENST00000325144.4|ZBTB2|ENSG00000181472.4|zinc finger and BTB domain containing 2
hg19_v2_chr1_-_247171347_247171395	0.120608	SOX3_SOX2	ENST00000339986.7|ZNF695|ENSG00000197472.10|zinc finger protein 695 	ENST00000487338.2|ZNF695|ENSG00000197472.10|zinc finger protein 695
hg19_v2_chr14_+_22782867_22782922	0.119764	SOX3_SOX2	ENST00000390467.3|TRAV40|ENSG00000211819.3|T cell receptor alpha variable 40
hg19_v2_chr13_-_99852916_99852964	0.119727	SOX3_SOX2	ENST00000426037.2|UBAC2-AS1|ENSG00000228889.2|UBAC2 antisense RNA 1 	ENST00000445737.2|UBAC2-AS1|ENSG00000228889.2|UBAC2 antisense RNA 1
hg19_v2_chr7_-_26578407_26578451	0.119474	SOX3_SOX2	ENST00000242109.3|KIAA0087|ENSG00000122548.3|KIAA0087
hg19_v2_chr5_+_79615790_79615827	0.118971	SOX3_SOX2	ENST00000296739.4|SPZ1|ENSG00000164299.5|spermatogenic leucine zipper 1
hg19_v2_chr14_+_105781102_105781230	0.118672	SOX3_SOX2	ENST00000547217.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr17_-_48072574_48072597	0.118654	SOX3_SOX2	ENST00000434704.2|DLX3|ENSG00000064195.7|distal-less homeobox 3
hg19_v2_chr4_-_22517620_22517712	0.118524	SOX3_SOX2	ENST00000502482.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125 	ENST00000334304.5|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr8_+_104427581_104427677	0.118468	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr14_-_102976091_102976133	0.117833	SOX3_SOX2	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr12_+_69080734_69080808	0.117754	SOX3_SOX2	ENST00000378905.2|NUP107|ENSG00000111581.5|nucleoporin 107kDa
hg19_v2_chr10_-_81708854_81708867	0.117447	SOX3_SOX2	ENST00000372292.3|SFTPD|ENSG00000133661.11|surfactant protein D
hg19_v2_chr1_+_75594119_75594119	0.117398	SOX3_SOX2	ENST00000294638.5|LHX8|ENSG00000162624.10|LIM homeobox 8
hg19_v2_chr6_+_146350267_146350419	0.116754	SOX3_SOX2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr6_+_138725343_138725501	0.116695	SOX3_SOX2	ENST00000607197.1|HEBP2|ENSG00000051620.6|heme binding protein 2 	ENST00000367697.3|HEBP2|ENSG00000051620.6|heme binding protein 2
hg19_v2_chr6_-_108582168_108582256	0.115768	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chrX_-_139866723_139866723	0.115671	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr5_-_137090028_137090075	0.115454	SOX3_SOX2	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr13_+_113656047_113656068	0.115406	SOX3_SOX2	ENST00000375597.4|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr17_-_33446820_33446899	0.115164	SOX3_SOX2	ENST00000592577.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000590016.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000345365.6|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000360276.3|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000357906.3|RAD51D|ENSG00000185379.16|RAD51 paralog D
hg19_v2_chr20_-_44007014_44007033	0.115087	SOX3_SOX2	ENST00000372726.3|TP53TG5|ENSG00000124251.6|TP53 target 5 	ENST00000537995.1|TP53TG5|ENSG00000124251.6|TP53 target 5
hg19_v2_chr7_-_122840015_122840040	0.114623	SOX3_SOX2	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr22_+_23522552_23522748	0.114585	SOX3_SOX2	ENST00000359540.3|BCR|ENSG00000186716.15|breakpoint cluster region 	ENST00000398512.5|BCR|ENSG00000186716.15|breakpoint cluster region
hg19_v2_chr15_+_25200108_25200161	0.114507	SOX3_SOX2	ENST00000577949.1|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000338094.6|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000579070.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000577565.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000338327.4|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein
hg19_v2_chr16_-_8962853_8962878	0.114349	SOX3_SOX2	ENST00000565287.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa 	ENST00000311052.5|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr18_+_7946941_7946952	0.114042	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr8_+_144679984_144680074	0.113623	SOX3_SOX2	ENST00000504548.2|TIGD5|ENSG00000179886.4|tigger transposable element derived 5 	ENST00000321385.3|TIGD5|ENSG00000179886.4|tigger transposable element derived 5
hg19_v2_chr1_-_3566627_3566676	0.112761	SOX3_SOX2	ENST00000419924.2|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000270708.7|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr17_-_62050278_62050278	0.112724	SOX3_SOX2	ENST00000578147.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit 	ENST00000435607.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit
hg19_v2_chr20_+_30063067_30063117	0.112558	SOX3_SOX2	ENST00000201979.2|REM1|ENSG00000088320.3|RAS (RAD and GEM)-like GTP-binding 1
hg19_v2_chr10_-_101825151_101825200	0.111395	SOX3_SOX2	ENST00000441382.1|CPN1|ENSG00000120054.7|carboxypeptidase N, polypeptide 1
hg19_v2_chr19_+_35606692_35606769	0.111256	SOX3_SOX2	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr6_+_30689350_30689366	0.111245	SOX3_SOX2	ENST00000330914.3|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr13_+_45694583_45694696	0.111	SOX3_SOX2	ENST00000340473.6|GTF2F2|ENSG00000188342.7|general transcription factor IIF, polypeptide 2, 30kDa
hg19_v2_chr8_+_73449625_73449668	0.11006	SOX3_SOX2	ENST00000523207.1|KCNB2|ENSG00000182674.5|potassium voltage-gated channel, Shab-related subfamily, member 2
hg19_v2_chr15_-_35047166_35047204	0.109877	SOX3_SOX2	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr18_+_18943554_18943587	0.109742	SOX3_SOX2	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr6_-_41040195_41040263	0.109183	SOX3_SOX2	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr17_+_16284104_16284245	0.108988	SOX3_SOX2	ENST00000577958.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000302182.3|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000577640.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr2_-_163695238_163695258	0.10884	SOX3_SOX2	ENST00000328032.4|KCNH7|ENSG00000184611.7|potassium voltage-gated channel, subfamily H (eag-related), member 7
hg19_v2_chr14_+_52456327_52456344	0.108182	SOX3_SOX2	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr19_-_12833361_12833386	0.10759	SOX3_SOX2	ENST00000592287.1|TNPO2|ENSG00000105576.11|transportin 2
hg19_v2_chr3_+_127348005_127348063	0.107285	SOX3_SOX2	ENST00000342480.6|PODXL2|ENSG00000114631.10|podocalyxin-like 2
hg19_v2_chr2_+_207024306_207024392	0.107033	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr5_+_111496631_111496703	0.10673	SOX3_SOX2	ENST00000508590.1|EPB41L4A-AS1|ENSG00000224032.2|EPB41L4A antisense RNA 1
hg19_v2_chr19_-_17445613_17445648	0.106708	SOX3_SOX2	ENST00000159087.4|ANO8|ENSG00000074855.6|anoctamin 8
hg19_v2_chr20_-_32274179_32274213	0.106664	SOX3_SOX2	ENST00000343380.5|E2F1|ENSG00000101412.9|E2F transcription factor 1
hg19_v2_chr4_-_155511887_155511918	0.106394	SOX3_SOX2	ENST00000302053.3|FGA|ENSG00000171560.10|fibrinogen alpha chain 	ENST00000403106.3|FGA|ENSG00000171560.10|fibrinogen alpha chain
hg19_v2_chr15_-_52263937_52264003	0.106142	SOX3_SOX2	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr8_-_6420930_6420957	0.106109	SOX3_SOX2	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr15_-_72766533_72766572	0.106008	SOX3_SOX2	ENST00000562573.1|RP11-1007O24.3|ENSG00000261423.1|RP11-1007O24.3
hg19_v2_chr6_+_56954808_56954845	0.105788	SOX3_SOX2	ENST00000510483.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370706.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000357489.3|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr2_-_100721923_100722045	0.105734	SOX3_SOX2	ENST00000356421.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr15_-_38519066_38519111	0.105677	SOX3_SOX2	ENST00000561320.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1	ENST00000561161.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1
hg19_v2_chr2_+_105858200_105858200	0.105656	SOX3_SOX2	ENST00000258456.1|GPR45|ENSG00000135973.1|G protein-coupled receptor 45
hg19_v2_chr8_-_124279627_124279627	0.105515	SOX3_SOX2	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr7_-_140340576_140340622	0.105485	SOX3_SOX2	ENST00000275884.6|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A 	ENST00000475837.1|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A
hg19_v2_chr2_-_74780176_74780259	0.10543	SOX3_SOX2	ENST00000409549.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr11_+_67007518_67007533	0.105411	SOX3_SOX2	ENST00000530342.1|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A 	ENST00000308783.5|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A
hg19_v2_chr17_-_37353950_37353961	0.1054	SOX3_SOX2	ENST00000394310.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000394303.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000344140.5|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit
hg19_v2_chrX_+_114827818_114827842	0.104889	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr6_+_84569359_84569445	0.104814	SOX3_SOX2	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr11_-_45940343_45940399	0.104759	SOX3_SOX2	ENST00000532681.1|PEX16|ENSG00000121680.11|peroxisomal biogenesis factor 16
hg19_v2_chr14_+_23846210_23846272	0.104285	SOX3_SOX2	ENST00000339180.4|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000342473.4|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000397227.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000555731.1|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr6_+_160183492_160183523	0.103588	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr5_-_83680603_83680617	0.103457	SOX3_SOX2	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr1_-_247697141_247697141	0.103186	SOX3_SOX2	ENST00000366487.3|OR2C3|ENSG00000196242.6|olfactory receptor, family 2, subfamily C, member 3
hg19_v2_chr13_+_39612485_39612599	0.102292	SOX3_SOX2	ENST00000379599.2|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr1_-_153643442_153643524	0.102015	SOX3_SOX2	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr1_+_100111580_100111773	0.10166	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr5_+_179159813_179159851	0.101487	SOX3_SOX2	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chrX_+_100645812_100646008	0.101238	SOX3_SOX2	ENST00000427805.2|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000553110.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000392994.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000409338.1|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough 	ENST00000409170.3|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough
hg19_v2_chr2_+_202937972_202937988	0.101127	SOX3_SOX2	ENST00000541917.1|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012  	ENST00000295844.3|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012
hg19_v2_chr6_+_134274322_134274342	0.101064	SOX3_SOX2	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr4_+_113152881_113152912	0.100998	SOX3_SOX2	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr18_+_11751466_11751475	0.100828	SOX3_SOX2	ENST00000535121.1|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr10_+_50822083_50822083	0.100633	SOX3_SOX2	ENST00000337653.2|CHAT|ENSG00000070748.13|choline O-acetyltransferase 	ENST00000395562.2|CHAT|ENSG00000070748.13|choline O-acetyltransferase
hg19_v2_chr19_-_51538118_51538134	0.100622	SOX3_SOX2	ENST00000529888.1|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12
hg19_v2_chrX_+_107069063_107069123	0.100438	SOX3_SOX2	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr7_+_69064566_69064597	0.0998897	SOX3_SOX2	ENST00000403018.2|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr5_-_98262240_98262240	0.0997325	SOX3_SOX2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr16_-_48281305_48281419	0.0996761	SOX3_SOX2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chrX_-_16730688_16730814	0.0996613	SOX3_SOX2	ENST00000359276.4|CTPS2|ENSG00000047230.10|CTP synthase 2
hg19_v2_chr1_+_32666188_32666274	0.0994459	SOX3_SOX2	ENST00000421922.2|CCDC28B|ENSG00000160050.10|coiled-coil domain containing 28B
hg19_v2_chr20_+_34556488_34556545	0.0988106	SOX3_SOX2	ENST00000373973.3|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2 	ENST00000349339.1|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2 	ENST00000538900.1|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2
hg19_v2_chr19_+_17326191_17326215	0.0981483	SOX3_SOX2	ENST00000595101.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000596136.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000379776.4|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr2_+_181845843_181845859	0.0976809	SOX3_SOX2	ENST00000602710.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr14_-_21562648_21562659	0.097566	SOX3_SOX2	ENST00000555270.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr2_-_73964447_73964527	0.0973525	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chr14_-_22938665_22938690	0.0970412	SOX3_SOX2	ENST00000535880.2|TRDV3|ENSG00000256590.2|T cell receptor delta variable 3
hg19_v2_chr7_-_148787768_148787874	0.0969721	SOX3_SOX2	ENST00000491431.1|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000451334.3|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000316286.9|ZNF786|ENSG00000197362.9|zinc finger protein 786
hg19_v2_chr4_-_113558079_113558145	0.0967765	SOX3_SOX2	ENST00000445203.2|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr10_+_30722866_30722969	0.0953253	SOX3_SOX2	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr16_+_67063262_67063364	0.0950441	SOX3_SOX2	ENST00000565389.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr12_-_121734489_121734564	0.0949052	SOX3_SOX2	ENST00000412367.2|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta 	ENST00000402834.4|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta 	ENST00000404169.3|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
hg19_v2_chr9_+_15422702_15422883	0.0947959	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr1_+_11539204_11539295	0.0939908	SOX3_SOX2	ENST00000294484.6|PTCHD2|ENSG00000204624.6|patched domain containing 2 	ENST00000389575.3|PTCHD2|ENSG00000204624.6|patched domain containing 2
hg19_v2_chr6_-_35464727_35464738	0.0937359	SOX3_SOX2	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr15_-_44486632_44486664	0.093625	SOX3_SOX2	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr3_-_52001448_52001478	0.0933718	SOX3_SOX2	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr16_+_67063142_67063153	0.0931983	SOX3_SOX2	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr19_+_34663551_34663564	0.0928806	SOX3_SOX2	ENST00000586157.1|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr1_-_68698197_68698214	0.0923297	SOX3_SOX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr19_+_52298399_52298445	0.0920576	SOX3_SOX2	ENST00000339223.4|FPR3|ENSG00000187474.4|formyl peptide receptor 3
hg19_v2_chr7_+_87563557_87563735	0.0919578	SOX3_SOX2	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr5_-_27038683_27038700	0.0919243	SOX3_SOX2	ENST00000511822.1|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin) 	ENST00000231021.4|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin)
hg19_v2_chr14_+_20923350_20923424	0.0917602	SOX3_SOX2	ENST00000555414.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000216714.3|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553681.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557344.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000398030.4|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557181.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000555839.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553368.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000556054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557592.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557150.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1
hg19_v2_chr11_-_35287243_35287292	0.0916332	SOX3_SOX2	ENST00000464522.2|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr2_+_166428839_166428859	0.0916061	SOX3_SOX2	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr10_-_54531406_54531460	0.0914396	SOX3_SOX2	ENST00000373968.3|MBL2|ENSG00000165471.6|mannose-binding lectin (protein C) 2, soluble
hg19_v2_chr11_-_89224488_89224507	0.0913734	SOX3_SOX2	ENST00000534731.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000527626.1|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr5_-_54281491_54281517	0.0906203	SOX3_SOX2	ENST00000381405.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr14_+_23340822_23341004	0.0904932	SOX3_SOX2	ENST00000359591.4|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chrX_+_155227246_155227335	0.0904903	SOX3_SOX2	ENST00000244174.5|IL9R|ENSG00000124334.12|interleukin 9 receptor 	ENST00000424344.3|IL9R|ENSG00000124334.12|interleukin 9 receptor
hg19_v2_chr1_+_156119798_156119834	0.090465	SOX3_SOX2	ENST00000355014.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr1_+_28696111_28696130	0.0899236	SOX3_SOX2	ENST00000373839.3|PHACTR4|ENSG00000204138.8|phosphatase and actin regulator 4
hg19_v2_chr14_+_102414651_102414721	0.0896101	SOX3_SOX2	ENST00000607414.1|RP11-1017G21.5|ENSG00000271780.1|RP11-1017G21.5
hg19_v2_chr1_+_28844778_28844807	0.089457	SOX3_SOX2	ENST00000411533.1|RCC1|ENSG00000180198.11|regulator of chromosome condensation 1
hg19_v2_chr7_+_111846741_111846776	0.0886742	SOX3_SOX2	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr17_-_73150629_73150778	0.0878875	SOX3_SOX2	ENST00000356033.4|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000405458.3|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000409753.3|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr3_+_108855558_108855733	0.0878618	SOX3_SOX2	ENST00000467240.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000477643.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000479039.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000593799.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1
hg19_v2_chr6_-_132834184_132834337	0.0878611	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr15_+_69373184_69373202	0.087848	SOX3_SOX2	ENST00000558147.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000440444.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277
hg19_v2_chr2_-_74570520_74570547	0.087553	SOX3_SOX2	ENST00000394019.2|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000346834.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000359484.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000423644.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000377634.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000436454.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5
hg19_v2_chr3_+_138067666_138067745	0.0872857	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr14_-_23451467_23451713	0.0872105	SOX3_SOX2	ENST00000555074.1|RP11-298I3.5|ENSG00000259132.1|RP11-298I3.5	ENST00000361265.4|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr14_+_22948510_22948510	0.0869756	SOX3_SOX2	ENST00000390483.1|TRAJ56|ENSG00000211835.1|T cell receptor alpha joining 56
hg19_v2_chr18_+_11851383_11851399	0.0869397	SOX3_SOX2	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr4_+_41983713_41983798	0.0863218	SOX3_SOX2	ENST00000333141.5|DCAF4L1|ENSG00000182308.5|DDB1 and CUL4 associated factor 4-like 1
hg19_v2_chr7_+_16828866_16828866	0.086223	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr4_-_120548779_120548825	0.0858956	SOX3_SOX2	ENST00000264805.5|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr14_+_52456193_52456320	0.0856125	SOX3_SOX2	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr9_-_136857403_136857461	0.0855227	SOX3_SOX2	ENST00000406606.3|VAV2|ENSG00000160293.12|vav 2 guanine nucleotide exchange factor 	ENST00000371850.3|VAV2|ENSG00000160293.12|vav 2 guanine nucleotide exchange factor
hg19_v2_chr19_+_3224700_3224759	0.0852006	SOX3_SOX2	ENST00000292672.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5 	ENST00000541430.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5
hg19_v2_chr14_-_82089405_82089428	0.0851669	SOX3_SOX2	ENST00000554211.1|RP11-799P8.1|ENSG00000258977.1|RP11-799P8.1
hg19_v2_chr15_-_35088340_35088340	0.0847815	SOX3_SOX2	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chr20_-_48184638_48184694	0.0846065	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr19_+_57640011_57640011	0.0841921	SOX3_SOX2	ENST00000598197.1|USP29|ENSG00000131864.6|ubiquitin specific peptidase 29
hg19_v2_chr3_-_50649192_50649262	0.0835104	SOX3_SOX2	ENST00000443053.2|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein 	ENST00000348721.3|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein
hg19_v2_chr19_-_39826639_39826825	0.0829667	SOX3_SOX2	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr4_-_120549163_120549220	0.0826493	SOX3_SOX2	ENST00000394439.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific 	ENST00000420633.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr6_+_29429217_29429217	0.0825318	SOX3_SOX2	ENST00000396792.2|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr11_-_94227029_94227074	0.0822922	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr20_-_1538319_1538363	0.0816974	SOX3_SOX2	ENST00000381621.1|SIRPD|ENSG00000125900.8|signal-regulatory protein delta
hg19_v2_chr19_+_12949251_12949370	0.0815337	SOX3_SOX2	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr5_+_179921344_179921423	0.0814541	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr1_-_17766198_17766232	0.0813029	SOX3_SOX2	ENST00000375436.4|RCC2|ENSG00000179051.9|regulator of chromosome condensation 2
hg19_v2_chr1_-_113160826_113160844	0.0809491	SOX3_SOX2	ENST00000538187.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369664.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chr3_+_141106643_141106681	0.0808136	SOX3_SOX2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr4_+_88343952_88343970	0.0807291	SOX3_SOX2	ENST00000440591.2|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr4_-_69111401_69111438	0.0807138	SOX3_SOX2	ENST00000332644.5|TMPRSS11B|ENSG00000185873.7|transmembrane protease, serine 11B
hg19_v2_chr12_-_76953284_76953341	0.0802758	SOX3_SOX2	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr17_+_29664830_29664844	0.0795726	SOX3_SOX2	ENST00000444181.2|NF1|ENSG00000196712.12|neurofibromin 1 	ENST00000417592.2|NF1|ENSG00000196712.12|neurofibromin 1
hg19_v2_chr12_-_89413456_89413484	0.0788839	SOX3_SOX2	ENST00000500381.2|RP11-13A1.1|ENSG00000246363.2|RP11-13A1.1
hg19_v2_chr19_-_54784937_54785039	0.0782976	SOX3_SOX2	ENST00000434421.1|LILRB2|ENSG00000131042.9|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 	ENST00000314446.5|LILRB2|ENSG00000131042.9|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 	ENST00000391749.4|LILRB2|ENSG00000131042.9|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2
hg19_v2_chr1_+_202789394_202789394	0.0782669	SOX3_SOX2	ENST00000330493.5|RP11-480I12.4|ENSG00000184774.6|Putative inactive alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515
hg19_v2_chr19_-_12267524_12267564	0.0780913	SOX3_SOX2	ENST00000455799.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000355738.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000439556.2|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000542938.1|ZNF625|ENSG00000257591.1|zinc finger protein 625
hg19_v2_chr2_+_171571827_171571861	0.0780636	SOX3_SOX2	ENST00000375281.3|SP5|ENSG00000204335.3|Sp5 transcription factor
hg19_v2_chr10_-_35104185_35104267	0.077604	SOX3_SOX2	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr9_+_107526443_107526477	0.0771279	SOX3_SOX2	ENST00000374762.3|NIPSNAP3B|ENSG00000165028.7|nipsnap homolog 3B (C. elegans)
hg19_v2_chr16_+_31191431_31191472	0.0768829	SOX3_SOX2	ENST00000254108.7|FUS|ENSG00000089280.14|fused in sarcoma 	ENST00000380244.3|FUS|ENSG00000089280.14|fused in sarcoma 	ENST00000568685.1|FUS|ENSG00000089280.14|fused in sarcoma
hg19_v2_chr3_-_182698381_182698431	0.0767507	SOX3_SOX2	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr8_-_117043_117043	0.0764823	SOX3_SOX2	ENST00000320901.3|OR4F21|ENSG00000176269.3|olfactory receptor, family 4, subfamily F, member 21
hg19_v2_chr1_-_68698222_68698266	0.076376	SOX3_SOX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr1_-_3566590_3566622	0.0759045	SOX3_SOX2	ENST00000424367.1|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000378322.3|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr5_+_112074029_112074040	0.0757917	SOX3_SOX2	ENST00000512211.2|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr9_-_86595105_86595184	0.0757518	SOX3_SOX2	ENST00000457156.1|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000360384.5|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376263.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr14_-_21994525_21994634	0.075743	SOX3_SOX2	ENST00000538754.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr2_-_183387430_183387465	0.0753565	SOX3_SOX2	ENST00000410103.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr22_-_48943199_48943199	0.0753167	SOX3_SOX2	ENST00000407505.3|CTA-299D3.8|ENSG00000219016.3|Uncharacterized protein
hg19_v2_chr7_+_86273700_86273716	0.0751483	SOX3_SOX2	ENST00000546348.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chrX_-_13956497_13956536	0.0750747	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr4_-_83350580_83350600	0.0747383	SOX3_SOX2	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr22_-_32341336_32341336	0.0746827	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr2_+_71295733_71295752	0.0745882	SOX3_SOX2	ENST00000443938.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000244204.6|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr15_+_41136586_41136725	0.0744065	SOX3_SOX2	ENST00000431806.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr16_-_48419361_48419408	0.073996	SOX3_SOX2	ENST00000394725.2|SIAH1|ENSG00000196470.7|siah E3 ubiquitin protein ligase 1
hg19_v2_chr4_-_138453606_138453673	0.0732846	SOX3_SOX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr2_+_202098203_202098256	0.0728936	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr1_-_120439112_120439125	0.0724101	SOX3_SOX2	ENST00000369400.1|ADAM30|ENSG00000134249.6|ADAM metallopeptidase domain 30
hg19_v2_chr19_-_58514129_58514205	0.0720393	SOX3_SOX2	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr12_-_99548270_99548295	0.0716913	SOX3_SOX2	ENST00000546568.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000332712.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000546960.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr9_+_18474163_18474202	0.0708809	SOX3_SOX2	ENST00000380566.4|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chr19_+_48773337_48773359	0.0708775	SOX3_SOX2	ENST00000595607.1|ZNF114|ENSG00000178150.4|zinc finger protein 114
hg19_v2_chr8_+_12803176_12803195	0.0707708	SOX3_SOX2	ENST00000524591.2|KIAA1456|ENSG00000250305.4|KIAA1456
hg19_v2_chr21_-_34143971_34143983	0.0706507	SOX3_SOX2	ENST00000290178.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr9_+_2622085_2622174	0.0695167	SOX3_SOX2	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr19_-_20844368_20844407	0.0694005	SOX3_SOX2	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr7_-_32110451_32110523	0.0693438	SOX3_SOX2	ENST00000396191.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa 	ENST00000396182.2|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr4_-_113437328_113437337	0.0691093	SOX3_SOX2	ENST00000313341.3|NEUROG2|ENSG00000178403.3|neurogenin 2
hg19_v2_chr13_-_38443860_38443939	0.068953	SOX3_SOX2	ENST00000426868.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379681.3|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000338947.5|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000355779.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000358477.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379673.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4
hg19_v2_chr17_+_43972010_43972040	0.0687278	SOX3_SOX2	ENST00000334239.8|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000446361.3|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr1_-_113247543_113247770	0.0685652	SOX3_SOX2	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chrY_+_26997726_26997726	0.0685135	SOX3_SOX2	ENST00000382296.2|DAZ4|ENSG00000205916.6|deleted in azoospermia 4
hg19_v2_chrX_+_103031758_103031779	0.068482	SOX3_SOX2	ENST00000303958.2|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000361621.2|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr16_-_11730213_11730238	0.0682396	SOX3_SOX2	ENST00000576334.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574848.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr1_-_145589424_145589471	0.0681717	SOX3_SOX2	ENST00000334513.5|NUDT17|ENSG00000186364.7|nudix (nucleoside diphosphate linked moiety X)-type motif 17
hg19_v2_chr2_+_71295717_71295732	0.068158	SOX3_SOX2	ENST00000418807.3|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000443872.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr3_+_193310918_193310934	0.0674628	SOX3_SOX2	ENST00000361908.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000392438.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361510.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361715.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361828.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361150.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr17_-_30669138_30669208	0.0673057	SOX3_SOX2	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr12_-_6772303_6772314	0.0673006	SOX3_SOX2	ENST00000396807.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000446105.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000341550.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr7_+_5938351_5938379	0.066963	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr16_-_787771_787889	0.0666172	SOX3_SOX2	ENST00000568545.1|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like
hg19_v2_chr9_+_82187487_82187557	0.0665702	SOX3_SOX2	ENST00000435650.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000414465.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376537.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376534.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr15_-_56035177_56035355	0.0663973	SOX3_SOX2	ENST00000389286.4|PRTG|ENSG00000166450.8|protogenin 	ENST00000561292.1|PRTG|ENSG00000166450.8|protogenin
hg19_v2_chr5_-_40835303_40835437	0.0656211	SOX3_SOX2	ENST00000509877.1|RPL37|ENSG00000145592.9|ribosomal protein L37 	ENST00000508493.1|RPL37|ENSG00000145592.9|ribosomal protein L37 	ENST00000274242.5|RPL37|ENSG00000145592.9|ribosomal protein L37
hg19_v2_chr1_-_151119087_151119114	0.0649154	SOX3_SOX2	ENST00000341697.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENST00000368914.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
hg19_v2_chr3_-_129407535_129407575	0.0644974	SOX3_SOX2	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr8_-_53322303_53322340	0.064486	SOX3_SOX2	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr12_-_88974236_88974256	0.0644174	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr12_-_18243075_18243091	0.0636885	SOX3_SOX2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr3_+_107241882_107241904	0.0636021	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr11_+_7273181_7273223	0.0630504	SOX3_SOX2	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr17_+_78010428_78010465	0.0627677	SOX3_SOX2	ENST00000397545.4|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000374877.3|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000269318.5|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000374876.4|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000576033.1|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000574099.1|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40
hg19_v2_chr2_-_99347528_99347603	0.0627456	SOX3_SOX2	ENST00000393487.1|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr16_+_29818857_29819023	0.0626594	SOX3_SOX2	ENST00000567444.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr17_-_10452929_10452946	0.0619	SOX3_SOX2	ENST00000532183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000397183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000420805.1|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult
hg19_v2_chr1_-_21671968_21672009	0.0616911	SOX3_SOX2	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr8_-_97247759_97247862	0.0614402	SOX3_SOX2	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr14_-_80697396_80697402	0.0611621	SOX3_SOX2	ENST00000557010.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chrX_-_72097698_72097698	0.0611568	SOX3_SOX2	ENST00000373530.1|DMRTC1|ENSG00000159123.10|DMRT-like family C1
hg19_v2_chr17_+_27369918_27370010	0.0610937	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr3_+_31574189_31574282	0.0610788	SOX3_SOX2	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr3_-_88108212_88108223	0.060966	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr19_-_23433144_23433204	0.0609074	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr1_+_100111479_100111499	0.0602162	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr3_-_64009658_64009687	0.0601536	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr1_+_223566715_223566791	0.0600979	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr19_-_38743878_38743928	0.0600885	SOX3_SOX2	ENST00000587515.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr17_-_4458616_4458712	0.059722	SOX3_SOX2	ENST00000381556.2|MYBBP1A|ENSG00000132382.10|MYB binding protein (P160) 1a
hg19_v2_chr12_-_64784471_64784503	0.0597199	SOX3_SOX2	ENST00000333722.5|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr17_-_62308087_62308116	0.0591388	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr8_-_20161466_20161481	0.0590199	SOX3_SOX2	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr18_-_32924372_32924430	0.0590128	SOX3_SOX2	ENST00000261332.6|ZNF24|ENSG00000172466.11|zinc finger protein 24 	ENST00000399061.3|ZNF24|ENSG00000172466.11|zinc finger protein 24
hg19_v2_chr5_+_140753444_140753651	0.0584926	SOX3_SOX2	ENST00000517434.1|PCDHGA6|ENSG00000253731.1|protocadherin gamma subfamily A, 6
hg19_v2_chr15_+_80987617_80987720	0.0583962	SOX3_SOX2	ENST00000258884.4|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C 	ENST00000558464.1|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C
hg19_v2_chr3_-_48601206_48601222	0.058311	SOX3_SOX2	ENST00000273610.3|UCN2|ENSG00000145040.3|urocortin 2
hg19_v2_chr3_-_112360116_112360153	0.0580692	SOX3_SOX2	ENST00000206423.3|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80 	ENST00000439685.2|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr7_+_86273952_86274090	0.0580611	SOX3_SOX2	ENST00000536043.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr8_+_104384616_104384661	0.0580241	SOX3_SOX2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr6_+_170190417_170190475	0.0575943	SOX3_SOX2	ENST00000420557.2|LINC00574|ENSG00000231690.2|long intergenic non-protein coding RNA 574
hg19_v2_chr19_+_11649532_11649674	0.0571105	SOX3_SOX2	ENST00000252456.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000592923.1|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000535659.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle
hg19_v2_chr12_+_45686457_45686482	0.0570959	SOX3_SOX2	ENST00000441606.2|ANO6|ENSG00000177119.11|anoctamin 6
hg19_v2_chr1_+_47881744_47881744	0.0570691	SOX3_SOX2	ENST00000335071.2|FOXE3|ENSG00000186790.4|forkhead box E3
hg19_v2_chr5_-_131892501_131892530	0.0569445	SOX3_SOX2	ENST00000450655.1|IL5|ENSG00000113525.5|interleukin 5 (colony-stimulating factor, eosinophil)
hg19_v2_chr3_+_9834758_9834801	0.0560995	SOX3_SOX2	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chr10_+_18689637_18689742	0.055882	SOX3_SOX2	ENST00000377315.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr8_-_8318847_8318883	0.0558669	SOX3_SOX2	ENST00000521218.1|CTA-398F10.2|ENSG00000254153.1|CTA-398F10.2
hg19_v2_chr16_+_4674814_4674962	0.0557701	SOX3_SOX2	ENST00000415496.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000587747.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000399577.5|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000588994.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000586183.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr3_-_155011483_155011564	0.0554484	SOX3_SOX2	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr9_-_34612077_34612125	0.0550716	SOX3_SOX2	ENST00000378959.4|RPP25L|ENSG00000164967.5|ribonuclease P/MRP 25kDa subunit-like 	ENST00000297613.4|RPP25L|ENSG00000164967.5|ribonuclease P/MRP 25kDa subunit-like
hg19_v2_chr6_-_49834209_49834220	0.0550392	SOX3_SOX2	ENST00000507853.1|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr4_-_15656923_15657035	0.0549108	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr20_-_34252759_34252843	0.0548055	SOX3_SOX2	ENST00000414711.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000416778.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397442.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000440240.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000412056.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000352393.4|CPNE1|ENSG00000214078.7|copine I 	ENST00000359646.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000458038.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000424458.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000420363.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000434795.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374104.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437100.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000414664.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374114.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr9_-_138799070_138799284	0.0547199	SOX3_SOX2	ENST00000389532.4|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1 	ENST00000409386.3|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1
hg19_v2_chrX_-_45629661_45629677	0.0544104	SOX3_SOX2	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr14_-_57960545_57960595	0.0543175	SOX3_SOX2	ENST00000526336.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000216445.3|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr3_-_64009102_64009236	0.0542756	SOX3_SOX2	ENST00000478185.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000482510.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000497323.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000492933.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000295901.4|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr1_-_151162606_151162689	0.0532975	SOX3_SOX2	ENST00000354473.4|VPS72|ENSG00000163159.7|vacuolar protein sorting 72 homolog (S. cerevisiae) 	ENST00000368892.4|VPS72|ENSG00000163159.7|vacuolar protein sorting 72 homolog (S. cerevisiae)
hg19_v2_chr14_-_50698276_50698304	0.0532305	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr4_+_52709229_52709345	0.0531551	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr10_+_27793197_27793247	0.052905	SOX3_SOX2	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr1_+_10459111_10459175	0.0526604	SOX3_SOX2	ENST00000541529.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000270776.8|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000483936.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000538557.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr7_+_56119323_56119492	0.052072	SOX3_SOX2	ENST00000275603.4|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000335503.3|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000540286.1|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1)
hg19_v2_chr12_-_1703331_1703377	0.0513721	SOX3_SOX2	ENST00000339235.3|FBXL14|ENSG00000171823.6|F-box and leucine-rich repeat protein 14
hg19_v2_chr11_-_102714534_102714534	0.0510791	SOX3_SOX2	ENST00000299855.5|MMP3|ENSG00000149968.7|matrix metallopeptidase 3 (stromelysin 1, progelatinase)
hg19_v2_chr1_+_92632542_92632609	0.0507032	SOX3_SOX2	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chrX_-_63005405_63005440	0.0506998	SOX3_SOX2	ENST00000374878.1|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000437457.2|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v2_chr14_-_65409502_65409531	0.0505433	SOX3_SOX2	ENST00000389614.5|GPX2|ENSG00000176153.10|glutathione peroxidase 2 (gastrointestinal)
hg19_v2_chr14_-_65409438_65409479	0.0504686	SOX3_SOX2	ENST00000557049.1|GPX2|ENSG00000176153.10|glutathione peroxidase 2 (gastrointestinal)
hg19_v2_chr2_+_74710194_74710217	0.0501927	SOX3_SOX2	ENST00000410003.1|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31 	ENST00000442235.2|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31 	ENST00000233623.5|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31
hg19_v2_chr13_-_113242439_113242488	0.0501214	SOX3_SOX2	ENST00000375669.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3 	ENST00000261965.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3
hg19_v2_chr17_-_42100474_42100589	0.0500842	SOX3_SOX2	ENST00000585950.1|TMEM101|ENSG00000091947.5|transmembrane protein 101 	ENST00000592127.1|TMEM101|ENSG00000091947.5|transmembrane protein 101 	ENST00000589334.1|TMEM101|ENSG00000091947.5|transmembrane protein 101
hg19_v2_chr16_+_1203194_1203241	0.050082	SOX3_SOX2	ENST00000348261.5|CACNA1H|ENSG00000196557.6|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENST00000358590.4|CACNA1H|ENSG00000196557.6|calcium channel, voltage-dependent, T type, alpha 1H subunit
hg19_v2_chr1_-_173176452_173176477	0.0499863	SOX3_SOX2	ENST00000281834.3|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr4_-_184580353_184580378	0.0499561	SOX3_SOX2	ENST00000326397.5|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr1_+_17866290_17866330	0.0499535	SOX3_SOX2	ENST00000361221.3|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENST00000452522.1|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENST00000434513.1|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like
hg19_v2_chr16_+_16434185_16434185	0.0493632	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr13_+_39612442_39612482	0.0492801	SOX3_SOX2	ENST00000470258.1|NHLRC3|ENSG00000188811.8|NHL repeat containing 3 	ENST00000379600.3|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chrX_+_102469997_102470094	0.0487656	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr10_-_128359074_128359083	0.0485538	SOX3_SOX2	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr19_-_20150014_20150085	0.0485159	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr1_-_32384693_32384724	0.048365	SOX3_SOX2	ENST00000602683.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2 	ENST00000470404.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2
hg19_v2_chr2_+_71127699_71127744	0.0483452	SOX3_SOX2	ENST00000234392.2|VAX2|ENSG00000116035.2|ventral anterior homeobox 2
hg19_v2_chr10_-_91174215_91174314	0.0477035	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chr4_+_184580420_184580485	0.0474972	SOX3_SOX2	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr1_+_66797687_66797884	0.0474268	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr3_+_107244229_107244254	0.0472863	SOX3_SOX2	ENST00000456419.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402163.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr10_+_114710425_114710470	0.0471105	SOX3_SOX2	ENST00000352065.5|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369395.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr2_+_24150180_24150202	0.0466048	SOX3_SOX2	ENST00000404924.1|UBXN2A|ENSG00000173960.8|UBX domain protein 2A
hg19_v2_chr3_+_52828805_52828821	0.0462229	SOX3_SOX2	ENST00000416872.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3 	ENST00000449956.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3
hg19_v2_chr4_-_57687847_57687911	0.0461427	SOX3_SOX2	ENST00000504762.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000248701.4|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000506738.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)
hg19_v2_chr14_+_97263641_97263764	0.0460356	SOX3_SOX2	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr12_-_56352368_56352387	0.0459615	SOX3_SOX2	ENST00000549404.1|PMEL|ENSG00000185664.10|premelanosome protein
hg19_v2_chr2_+_99953816_99953894	0.0454445	SOX3_SOX2	ENST00000289371.6|EIF5B|ENSG00000158417.6|eukaryotic translation initiation factor 5B
hg19_v2_chr7_+_11013491_11013553	0.0454244	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr11_+_34654011_34654118	0.0450955	SOX3_SOX2	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr6_-_49834240_49834253	0.0449921	SOX3_SOX2	ENST00000335847.4|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr1_+_201708992_201709011	0.0446041	SOX3_SOX2	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr19_+_17326521_17326574	0.0444909	SOX3_SOX2	ENST00000593597.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr12_-_56123444_56123491	0.0442719	SOX3_SOX2	ENST00000546457.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000549117.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr1_-_63153944_63154110	0.0441488	SOX3_SOX2	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr15_+_93443419_93443580	0.0441321	SOX3_SOX2	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr4_+_6717842_6717937	0.0436928	SOX3_SOX2	ENST00000320776.3|BLOC1S4|ENSG00000186222.3|biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino
hg19_v2_chr17_-_39041479_39041501	0.0436327	SOX3_SOX2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr15_+_76629064_76629073	0.0436169	SOX3_SOX2	ENST00000290759.4|ISL2|ENSG00000159556.5|ISL LIM homeobox 2
hg19_v2_chr9_+_117904097_117904097	0.0433432	SOX3_SOX2	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr3_-_149688655_149688737	0.0428843	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr8_+_68864330_68864361	0.0426604	SOX3_SOX2	ENST00000288368.4|PREX2|ENSG00000046889.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
hg19_v2_chr6_-_116447283_116447325	0.0422972	SOX3_SOX2	ENST00000452729.1|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1 	ENST00000243222.4|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1
hg19_v2_chr14_-_45603657_45603732	0.0422962	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chr11_+_20044600_20044636	0.0422412	SOX3_SOX2	ENST00000311043.8|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr12_-_45307711_45307922	0.0421195	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr6_+_32132360_32132437	0.0419517	SOX3_SOX2	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr11_-_84634217_84634229	0.0419059	SOX3_SOX2	ENST00000524982.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr5_+_179921430_179921461	0.0417716	SOX3_SOX2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chrX_+_37850026_37850070	0.0417231	SOX3_SOX2	ENST00000341016.3|CXorf27|ENSG00000187516.5|chromosome X open reading frame 27
hg19_v2_chr6_+_22146851_22146883	0.0415629	SOX3_SOX2	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr9_-_130966497_130966662	0.041483	SOX3_SOX2	ENST00000393608.1|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1 	ENST00000372948.3|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1
hg19_v2_chrX_-_71792477_71792720	0.0404237	SOX3_SOX2	ENST00000421523.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000415409.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373559.4|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373556.3|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373560.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373583.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000429103.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373571.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373554.1|HDAC8|ENSG00000147099.15|histone deacetylase 8
hg19_v2_chr8_-_66546439_66546451	0.0403889	SOX3_SOX2	ENST00000276569.3|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr2_-_80531399_80531566	0.0403845	SOX3_SOX2	ENST00000409148.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000415098.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000452811.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1
hg19_v2_chr14_-_21056121_21056206	0.0403375	SOX3_SOX2	ENST00000557105.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398008.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000555841.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000443456.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000432835.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000557503.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398009.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000554842.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr2_-_228497888_228498036	0.0397339	SOX3_SOX2	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr4_-_141677267_141677291	0.0396227	SOX3_SOX2	ENST00000442267.2|TBC1D9|ENSG00000109436.7|TBC1 domain family, member 9 (with GRAM domain)
hg19_v2_chr20_+_35202909_35203075	0.0393461	SOX3_SOX2	ENST00000558530.1|TGIF2-C20orf24|ENSG00000259399.1|TGIF2-C20orf24 readthrough 	ENST00000558028.1|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2 	ENST00000560025.1|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr19_-_57967854_57967854	0.0386891	SOX3_SOX2	ENST00000321039.3|VN1R1|ENSG00000178201.3|vomeronasal 1 receptor 1
hg19_v2_chr5_+_128795958_128796012	0.0385634	SOX3_SOX2	ENST00000274487.4|ADAMTS19|ENSG00000145808.4|ADAM metallopeptidase with thrombospondin type 1 motif, 19
hg19_v2_chr7_+_20370746_20370778	0.0385289	SOX3_SOX2	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr1_-_153538292_153538342	0.0382686	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr15_+_79166065_79166163	0.0381552	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr4_+_6675172_6675178	0.0373863	SOX3_SOX2	ENST00000307533.6|AC093323.3|ENSG00000170846.11|AC093323.3	ENST00000444232.2|AC093323.3|ENSG00000170846.11|AC093323.3
hg19_v2_chr2_+_30370382_30370421	0.0373843	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr5_+_147774275_147774340	0.0371961	SOX3_SOX2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr2_+_233877324_233877324	0.0364622	SOX3_SOX2	ENST00000409905.1|AC106876.2|ENSG00000222001.2|Uncharacterized protein
hg19_v2_chr11_+_114128522_114128553	0.0362747	SOX3_SOX2	ENST00000535401.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr4_+_128554081_128554121	0.0362688	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr7_-_105319536_105319611	0.0360241	SOX3_SOX2	ENST00000477775.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chrX_+_72062802_72062802	0.0359975	SOX3_SOX2	ENST00000373533.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr9_-_91793675_91793698	0.0358628	SOX3_SOX2	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr19_+_57791419_57791436	0.0358081	SOX3_SOX2	ENST00000537645.1|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr16_-_20339123_20339130	0.035241	SOX3_SOX2	ENST00000381360.5|GP2|ENSG00000169347.12|glycoprotein 2 (zymogen granule membrane)
hg19_v2_chr18_-_24128496_24128554	0.0351931	SOX3_SOX2	ENST00000417602.1|KCTD1|ENSG00000134504.8|potassium channel tetramerization domain containing 1
hg19_v2_chr8_-_18541603_18541650	0.0351216	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr11_-_6677018_6677085	0.0347823	SOX3_SOX2	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr1_-_111174054_111174096	0.0346824	SOX3_SOX2	ENST00000369770.3|KCNA2|ENSG00000177301.9|potassium voltage-gated channel, shaker-related subfamily, member 2
hg19_v2_chr16_+_70258261_70258261	0.0346039	SOX3_SOX2	ENST00000594734.1|FKSG63|ENSG00000269866.1|FKSG63
hg19_v2_chr12_+_32260085_32260268	0.0344244	SOX3_SOX2	ENST00000548411.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000281474.5|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000551086.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila)
hg19_v2_chr2_-_224810070_224810104	0.034379	SOX3_SOX2	ENST00000429915.1|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1 	ENST00000233055.4|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1
hg19_v2_chr9_-_27297126_27297140	0.0335422	SOX3_SOX2	ENST00000380031.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000537675.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000380032.3|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated
hg19_v2_chr3_-_149688502_149688526	0.0333035	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr6_+_108881012_108881038	0.0329456	SOX3_SOX2	ENST00000343882.6|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr18_-_7117813_7117843	0.0327547	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr16_-_8962544_8962584	0.0325943	SOX3_SOX2	ENST00000570125.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr12_+_75728419_75728476	0.03235	SOX3_SOX2	ENST00000378695.4|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1 	ENST00000312442.2|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1
hg19_v2_chr17_+_77751931_77752014	0.0316998	SOX3_SOX2	ENST00000310942.4|CBX2|ENSG00000173894.6|chromobox homolog 2 	ENST00000269399.5|CBX2|ENSG00000173894.6|chromobox homolog 2
hg19_v2_chr5_+_177631497_177631508	0.0315602	SOX3_SOX2	ENST00000358344.3|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B
hg19_v2_chrX_+_140968348_140968348	0.0314335	SOX3_SOX2	ENST00000536088.1|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3 	ENST00000443323.2|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3
hg19_v2_chrX_+_103031421_103031546	0.0310911	SOX3_SOX2	ENST00000433491.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000418604.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000443502.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr1_-_11863571_11863603	0.0308537	SOX3_SOX2	ENST00000376583.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr2_-_208989225_208989255	0.0308138	SOX3_SOX2	ENST00000264376.4|CRYGD|ENSG00000118231.4|crystallin, gamma D
hg19_v2_chrX_+_46306714_46306741	0.0299108	SOX3_SOX2	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr8_-_101965559_101965570	0.0297842	SOX3_SOX2	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr1_-_156722015_156722034	0.029681	SOX3_SOX2	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr10_-_97200772_97200919	0.0295898	SOX3_SOX2	ENST00000371241.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000354106.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371239.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000361941.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000277982.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371245.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr2_-_183387283_183387304	0.0294668	SOX3_SOX2	ENST00000435564.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr22_-_20256054_20256054	0.0293541	SOX3_SOX2	ENST00000043402.7|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr19_-_20150301_20150321	0.0289739	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr3_-_107596910_107596940	0.0289523	SOX3_SOX2	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr14_-_31495569_31495636	0.0288663	SOX3_SOX2	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr6_-_166582107_166582188	0.0286873	SOX3_SOX2	ENST00000296946.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000461348.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000366871.3|T|ENSG00000164458.5|T, brachyury homolog (mouse)
hg19_v2_chr2_-_54197915_54197977	0.0280459	SOX3_SOX2	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr9_+_39884975_39884975	0.0279745	SOX3_SOX2	ENST00000456183.2|SPATA31A2|ENSG00000204848.4|SPATA31 subfamily A, member 2
hg19_v2_chr20_-_29994007_29994069	0.0274731	SOX3_SOX2	ENST00000376314.2|DEFB121|ENSG00000204548.3|defensin, beta 121
hg19_v2_chr5_-_175964366_175964429	0.0274509	SOX3_SOX2	ENST00000274811.4|RNF44|ENSG00000146083.7|ring finger protein 44
hg19_v2_chr17_+_27717415_27717618	0.027367	SOX3_SOX2	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr9_+_82187630_82187722	0.0272669	SOX3_SOX2	ENST00000265284.6|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr10_+_70320413_70320413	0.0270495	SOX3_SOX2	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr5_+_140430979_140430979	0.0270389	SOX3_SOX2	ENST00000306549.3|PCDHB1|ENSG00000171815.3|protocadherin beta 1
hg19_v2_chr4_+_71263599_71263668	0.0269559	SOX3_SOX2	ENST00000399575.2|PROL1|ENSG00000171199.5|proline rich, lacrimal 1
hg19_v2_chr4_+_57774042_57774114	0.0262038	SOX3_SOX2	ENST00000309042.7|REST|ENSG00000084093.11|RE1-silencing transcription factor
hg19_v2_chr14_-_35099315_35099369	0.0260595	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr12_-_6233828_6233843	0.025869	SOX3_SOX2	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr20_-_60640866_60640901	0.0255923	SOX3_SOX2	ENST00000252996.4|TAF4|ENSG00000130699.12|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
hg19_v2_chr6_-_55443831_55443908	0.025525	SOX3_SOX2	ENST00000428842.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000358072.5|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000508459.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
hg19_v2_chr3_+_145782358_145782358	0.0246508	SOX3_SOX2	ENST00000422482.1|AC107021.1|ENSG00000232013.1|HCG1786590; PRO2533; Uncharacterized protein
hg19_v2_chr6_-_31508304_31508360	0.02423	SOX3_SOX2	ENST00000376177.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr5_+_147258266_147258280	0.0232217	SOX3_SOX2	ENST00000296694.4|SCGB3A2|ENSG00000164265.4|secretoglobin, family 3A, member 2
hg19_v2_chr6_-_72130472_72130519	0.0231389	SOX3_SOX2	ENST00000426635.2|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr5_-_168006591_168006638	0.0231005	SOX3_SOX2	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr17_-_33521412_33521412	0.0230361	SOX3_SOX2	ENST00000297307.5|SLC35G3|ENSG00000164729.6|solute carrier family 35, member G3
hg19_v2_chr4_+_88571429_88571459	0.0226908	SOX3_SOX2	ENST00000339673.6|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1 	ENST00000282479.7|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1
hg19_v2_chr19_+_11466167_11466180	0.0224749	SOX3_SOX2	ENST00000591608.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr3_+_46538981_46538981	0.022416	SOX3_SOX2	ENST00000296142.3|RTP3|ENSG00000163825.3|receptor (chemosensory) transporter protein 3
hg19_v2_chr14_+_77882741_77882741	0.0221473	SOX3_SOX2	ENST00000595520.1|FKSG61|ENSG00000268156.1|FKSG61
hg19_v2_chr14_-_24553834_24553850	0.0221367	SOX3_SOX2	ENST00000397002.2|NRL|ENSG00000129535.8|neural retina leucine zipper
hg19_v2_chr19_-_55874611_55874633	0.0219104	SOX3_SOX2	ENST00000424985.3|FAM71E2|ENSG00000180043.7|family with sequence similarity 71, member E2
hg19_v2_chr2_+_74685413_74685456	0.021882	SOX3_SOX2	ENST00000233615.2|WBP1|ENSG00000239779.2|WW domain binding protein 1
hg19_v2_chr19_-_51538148_51538203	0.0216817	SOX3_SOX2	ENST00000319590.4|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12 	ENST00000250351.4|KLK12|ENSG00000186474.11|kallikrein-related peptidase 12
hg19_v2_chr12_-_16761007_16761080	0.0215229	SOX3_SOX2	ENST00000354662.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2) 	ENST00000441439.2|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr20_-_62610982_62611008	0.0215219	SOX3_SOX2	ENST00000369886.3|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10 	ENST00000450107.1|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10
hg19_v2_chr4_-_109090106_109090124	0.0214829	SOX3_SOX2	ENST00000379951.2|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr6_-_64029879_64029891	0.0213449	SOX3_SOX2	ENST00000370658.5|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000485906.2|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000370657.4|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain
hg19_v2_chr4_-_109089573_109089585	0.0211447	SOX3_SOX2	ENST00000265165.1|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr14_-_24020858_24020988	0.0211416	SOX3_SOX2	ENST00000419474.3|ZFHX2|ENSG00000136367.12|zinc finger homeobox 2
hg19_v2_chr19_-_5903714_5903809	0.0208753	SOX3_SOX2	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr19_+_3880581_3880692	0.0208475	SOX3_SOX2	ENST00000450849.2|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000301260.6|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000398448.3|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type
hg19_v2_chr12_-_120907374_120907454	0.0206711	SOX3_SOX2	ENST00000550458.1|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr2_+_74685527_74685599	0.020236	SOX3_SOX2	ENST00000393972.3|WBP1|ENSG00000239779.2|WW domain binding protein 1 	ENST00000409737.1|WBP1|ENSG00000239779.2|WW domain binding protein 1 	ENST00000428943.1|WBP1|ENSG00000239779.2|WW domain binding protein 1
hg19_v2_chr4_+_175839551_175839567	0.0201333	SOX3_SOX2	ENST00000404450.4|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000514159.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29
hg19_v2_chr7_-_100487280_100487343	0.0199242	SOX3_SOX2	ENST00000388761.2|UFSP1|ENSG00000176125.3|UFM1-specific peptidase 1 (non-functional)
hg19_v2_chr8_+_107460147_107460207	0.0197286	SOX3_SOX2	ENST00000442977.2|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chrX_-_13338518_13338518	0.0196401	SOX3_SOX2	ENST00000380622.2|ATXN3L|ENSG00000123594.3|ataxin 3-like
hg19_v2_chr8_-_139926236_139926269	0.0191844	SOX3_SOX2	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chrX_-_46404811_46404876	0.0191761	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chrX_+_100646190_100646266	0.0189872	SOX3_SOX2	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr6_+_42981922_42982047	0.0187711	SOX3_SOX2	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr1_-_157670528_157670568	0.018742	SOX3_SOX2	ENST00000368186.5|FCRL3|ENSG00000160856.16|Fc receptor-like 3 	ENST00000496769.1|FCRL3|ENSG00000160856.16|Fc receptor-like 3
hg19_v2_chr5_+_138089100_138089146	0.0186439	SOX3_SOX2	ENST00000520339.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000355078.5|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000302763.7|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000518910.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr10_+_47894023_47894023	0.0184911	SOX3_SOX2	ENST00000358474.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr5_+_102595119_102595142	0.0184491	SOX3_SOX2	ENST00000510890.1|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr13_-_103053946_103054124	0.0181748	SOX3_SOX2	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr11_-_84634447_84634470	0.0181471	SOX3_SOX2	ENST00000532653.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr10_+_19777984_19778028	0.0174207	SOX3_SOX2	ENST00000377265.3|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1 	ENST00000455457.2|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1
hg19_v2_chr8_+_62200509_62200590	0.0172997	SOX3_SOX2	ENST00000519846.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000518592.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000325897.4|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr1_+_97187318_97187380	0.0172374	SOX3_SOX2	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr1_-_21113105_21113186	0.0172091	SOX3_SOX2	ENST00000375000.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000419490.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000414993.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000443615.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000312239.5|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3
hg19_v2_chr14_-_106322288_106322325	0.0171753	SOX3_SOX2	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr19_+_15197791_15197791	0.0170826	SOX3_SOX2	ENST00000209540.2|OR1I1|ENSG00000094661.2|olfactory receptor, family 1, subfamily I, member 1
hg19_v2_chr6_-_27440460_27440505	0.0168573	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr17_+_64961026_64961026	0.0168234	SOX3_SOX2	ENST00000262138.3|CACNG4|ENSG00000075461.5|calcium channel, voltage-dependent, gamma subunit 4
hg19_v2_chr9_+_133971909_133971943	0.0166691	SOX3_SOX2	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr2_-_224467093_224467221	0.016246	SOX3_SOX2	ENST00000305409.2|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr9_+_39355699_39355699	0.01618	SOX3_SOX2	ENST00000377647.3|SPATA31A1|ENSG00000204849.5|SPATA31 subfamily A, member 1
hg19_v2_chr6_-_137366096_137366111	0.0160446	SOX3_SOX2	ENST00000316649.5|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha 	ENST00000367746.3|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr9_-_74525847_74525847	0.0157702	SOX3_SOX2	ENST00000377041.2|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr15_+_57210818_57210930	0.0153558	SOX3_SOX2	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr13_+_28527647_28527667	0.0153295	SOX3_SOX2	ENST00000567234.1|LINC00543|ENSG00000260704.1|long intergenic non-protein coding RNA 543
hg19_v2_chr12_-_16759711_16759734	0.0151842	SOX3_SOX2	ENST00000447609.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr2_+_181845074_181845118	0.0150184	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chrX_-_134049262_134049297	0.0146528	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr14_-_69619291_69619326	0.0142587	SOX3_SOX2	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr5_+_60933634_60933637	0.0131331	SOX3_SOX2	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr3_+_9773409_9773479	0.0130456	SOX3_SOX2	ENST00000433861.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000424362.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000383829.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000302054.3|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000420291.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1
hg19_v2_chr5_+_140743859_140743898	0.0128922	SOX3_SOX2	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chrX_-_142722897_142723019	0.0128917	SOX3_SOX2	ENST00000338017.4|SLITRK4|ENSG00000179542.11|SLIT and NTRK-like family, member 4
hg19_v2_chr10_+_104535994_104536014	0.0125979	SOX3_SOX2	ENST00000369889.4|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr12_-_76462713_76462773	0.0122609	SOX3_SOX2	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr17_-_3337135_3337135	0.0121924	SOX3_SOX2	ENST00000248384.1|OR1E2|ENSG00000127780.3|olfactory receptor, family 1, subfamily E, member 2
hg19_v2_chr16_+_21610797_21610850	0.0118168	SOX3_SOX2	ENST00000358154.3|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr11_-_58499434_58499452	0.0117539	SOX3_SOX2	ENST00000344743.3|GLYAT|ENSG00000149124.6|glycine-N-acyltransferase 	ENST00000278400.3|GLYAT|ENSG00000149124.6|glycine-N-acyltransferase
hg19_v2_chr19_-_46476791_46476819	0.0113351	SOX3_SOX2	ENST00000263257.5|NOVA2|ENSG00000104967.6|neuro-oncological ventral antigen 2
hg19_v2_chr3_-_48541537_48541621	0.0106691	SOX3_SOX2	ENST00000443308.2|SHISA5|ENSG00000164054.11|shisa family member 5 	ENST00000417841.1|SHISA5|ENSG00000164054.11|shisa family member 5
hg19_v2_chr1_+_32538492_32538508	0.0106072	SOX3_SOX2	ENST00000336294.5|TMEM39B|ENSG00000121775.13|transmembrane protein 39B
hg19_v2_chrX_+_135579670_135579715	0.0104696	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr12_+_40787194_40787197	0.0104124	SOX3_SOX2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chrX_+_89176881_89176955	0.0102977	SOX3_SOX2	ENST00000283891.5|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked 	ENST00000561129.2|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked
hg19_v2_chr20_-_49547910_49547988	0.0100427	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chrX_+_48114752_48114830	0.00951491	SOX3_SOX2	ENST00000376919.3|SSX1|ENSG00000126752.7|synovial sarcoma, X breakpoint 1
hg19_v2_chr17_-_39661849_39661871	0.00919715	SOX3_SOX2	ENST00000246635.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000336861.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587544.1|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587435.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr4_+_189060573_189060573	0.0091581	SOX3_SOX2	ENST00000332517.3|TRIML1|ENSG00000184108.3|tripartite motif family-like 1
hg19_v2_chr15_-_60771128_60771277	0.00904986	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr19_+_19779619_19779670	0.00874255	SOX3_SOX2	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr4_-_184580304_184580351	0.00865986	SOX3_SOX2	ENST00000510968.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000512740.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000327570.9|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr1_+_202163015_202163029	0.00837269	SOX3_SOX2	ENST00000367278.3|LGR6|ENSG00000133067.13|leucine-rich repeat containing G protein-coupled receptor 6
hg19_v2_chr7_-_140178726_140178774	0.00833614	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr15_+_41709302_41709348	0.00821505	SOX3_SOX2	ENST00000389629.4|RTF1|ENSG00000137815.10|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr9_-_41327364_41327364	0.00781312	SOX3_SOX2	ENST00000377509.2|SPATA31A4|ENSG00000234214.3|SPATA31 subfamily A, member 4 	ENST00000429767.1|SPATA31A4|ENSG00000234214.3|SPATA31 subfamily A, member 4
hg19_v2_chr5_+_175792459_175792513	0.00770179	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chrX_-_138724677_138724887	0.00765615	SOX3_SOX2	ENST00000370573.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000338585.6|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000370576.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr9_+_41500679_41500679	0.00732205	SOX3_SOX2	ENST00000377621.1|SPATA31A5|ENSG00000233788.4|SPATA31 subfamily A, member 5
hg19_v2_chr7_-_45151272_45151332	0.00681827	SOX3_SOX2	ENST00000461363.1|TBRG4|ENSG00000136270.9|transforming growth factor beta regulator 4 	ENST00000495078.1|TBRG4|ENSG00000136270.9|transforming growth factor beta regulator 4 	ENST00000494076.1|TBRG4|ENSG00000136270.9|transforming growth factor beta regulator 4 	ENST00000478532.1|TBRG4|ENSG00000136270.9|transforming growth factor beta regulator 4 	ENST00000258770.3|TBRG4|ENSG00000136270.9|transforming growth factor beta regulator 4 	ENST00000361278.3|TBRG4|ENSG00000136270.9|transforming growth factor beta regulator 4
hg19_v2_chr13_-_31038370_31038509	0.00670959	SOX3_SOX2	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr20_+_36149602_36149665	0.00650323	SOX3_SOX2	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr17_+_74864476_74864592	0.00649859	SOX3_SOX2	ENST00000301618.4|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 	ENST00000569840.2|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
hg19_v2_chr2_+_69240511_69240532	0.00647791	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr2_+_207220463_207220463	0.00634518	SOX3_SOX2	ENST00000598562.1|AC017081.1|ENSG00000269633.1|Uncharacterized protein
hg19_v2_chr4_+_71768043_71768095	0.00601172	SOX3_SOX2	ENST00000502869.1|MOB1B|ENSG00000173542.4|MOB kinase activator 1B 	ENST00000309395.2|MOB1B|ENSG00000173542.4|MOB kinase activator 1B 	ENST00000396051.2|MOB1B|ENSG00000173542.4|MOB kinase activator 1B
hg19_v2_chr9_-_140196703_140196744	0.00502703	SOX3_SOX2	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr8_+_9009296_9009313	0.00500192	SOX3_SOX2	ENST00000521718.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr3_-_185655795_185655924	0.00498693	SOX3_SOX2	ENST00000342294.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000382191.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000453386.2|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr17_-_39681578_39681697	0.00495319	SOX3_SOX2	ENST00000593096.1|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr3_+_1134260_1134350	0.00478804	SOX3_SOX2	ENST00000446702.2|CNTN6|ENSG00000134115.8|contactin 6 	ENST00000539053.1|CNTN6|ENSG00000134115.8|contactin 6 	ENST00000350110.2|CNTN6|ENSG00000134115.8|contactin 6
hg19_v2_chr1_+_178482262_178482279	0.00474479	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr16_-_4852915_4852951	0.00461576	SOX3_SOX2	ENST00000322048.7|ROGDI|ENSG00000067836.8|rogdi homolog (Drosophila)
hg19_v2_chr8_+_98656336_98656535	0.00403607	SOX3_SOX2	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr7_-_76829125_76829143	0.0039997	SOX3_SOX2	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr10_+_18549645_18549698	0.00362223	SOX3_SOX2	ENST00000396576.2|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr8_-_86253888_86253944	0.00361603	SOX3_SOX2	ENST00000522389.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000432364.2|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517618.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr6_-_146057144_146057164	0.00344407	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chr8_-_144679833_144679914	0.00344246	SOX3_SOX2	ENST00000419152.2|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000423316.2|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000395119.3|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000529272.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr5_+_119867159_119867240	0.0029662	SOX3_SOX2	ENST00000505123.1|PRR16|ENSG00000184838.10|proline rich 16
hg19_v2_chr11_-_71810258_71810304	0.00287071	SOX3_SOX2	ENST00000544594.1|LAMTOR1|ENSG00000149357.5|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
hg19_v2_chr7_-_149158187_149158214	0.00279211	SOX3_SOX2	ENST00000247930.4|ZNF777|ENSG00000196453.7|zinc finger protein 777
hg19_v2_chr2_+_65283529_65283599	0.00264849	SOX3_SOX2	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr14_+_58754751_58754751	0.00241025	SOX3_SOX2	ENST00000598233.1|AL132989.1|ENSG00000268466.1|AL132989.1
hg19_v2_chr13_-_36944307_36944322	0.00205978	SOX3_SOX2	ENST00000355182.4|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr17_+_47074758_47074787	0.00186645	SOX3_SOX2	ENST00000290341.3|IGF2BP1|ENSG00000159217.5|insulin-like growth factor 2 mRNA binding protein 1
hg19_v2_chr2_-_70995307_70995344	0.00152876	SOX3_SOX2	ENST00000264436.4|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000355733.3|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000447731.2|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000430656.1|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000413157.2|ADD2|ENSG00000075340.18|adducin 2 (beta)
hg19_v2_chr2_-_61765315_61765422	0.0012401	SOX3_SOX2	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr9_+_133971863_133971897	0.000395101	SOX3_SOX2	ENST00000372309.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr19_+_44100544_44100581	0.000369507	SOX3_SOX2	ENST00000391965.2|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000525771.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr7_-_8302207_8302242	0.000335536	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr4_-_83351294_83351417	0.000132451	SOX3_SOX2	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
