hg19_v2_chr4_+_86396265_86396276	0.0990372	AGCUUAU	ENST00000395184.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr8_+_75736761_75736777	0.0870515	AGCUUAU	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr8_+_98881268_98881382	0.0802688	AGCUUAU	ENST00000254898.5|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000524308.1|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000522025.2|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr6_-_82462425_82462491	0.0655631	AGCUUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr10_+_112631547_112631596	0.0568143	AGCUUAU	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chr2_-_64371546_64371588	0.0563315	AGCUUAU	ENST00000358912.4|PELI1|ENSG00000197329.7|pellino E3 ubiquitin protein ligase 1
hg19_v2_chr22_+_33197683_33197698	0.0533378	AGCUUAU	ENST00000266085.6|TIMP3|ENSG00000100234.11|TIMP metallopeptidase inhibitor 3
hg19_v2_chr11_+_32851487_32851496	0.0528728	AGCUUAU	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr11_-_94964354_94964374	0.0520445	AGCUUAU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr3_-_24536253_24536328	0.0510025	AGCUUAU	ENST00000428492.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000396671.2|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000431815.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000418247.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000416420.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000356447.4|THRB|ENSG00000151090.13|thyroid hormone receptor, beta
hg19_v2_chr4_+_48018781_48018816	0.0472718	AGCUUAU	ENST00000295461.5|NIPAL1|ENSG00000163293.7|NIPA-like domain containing 1
hg19_v2_chr7_-_139876812_139876860	0.0447737	AGCUUAU	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr1_+_203274639_203274664	0.0421318	AGCUUAU	ENST00000290551.4|BTG2|ENSG00000159388.5|BTG family, member 2
hg19_v2_chr11_+_12308447_12308447	0.040996	AGCUUAU	ENST00000256186.2|MICALCL|ENSG00000133808.4|MICAL C-terminal like
hg19_v2_chr8_-_75233563_75233681	0.0369174	AGCUUAU	ENST00000342232.4|JPH1|ENSG00000104369.4|junctophilin 1
hg19_v2_chr8_-_22550815_22550844	0.0367975	AGCUUAU	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr16_-_2246436_2246526	0.0333847	AGCUUAU	ENST00000343516.6|CASKIN1|ENSG00000167971.14|CASK interacting protein 1
hg19_v2_chr5_-_54281491_54281517	0.0310859	AGCUUAU	ENST00000381405.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr3_-_18466787_18466861	0.0299973	AGCUUAU	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr3_+_159706537_159706741	0.0299502	AGCUUAU	ENST00000305579.2|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 	ENST00000480787.1|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 	ENST00000466512.1|IL12A|ENSG00000168811.2|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)
hg19_v2_chr1_+_218519577_218519594	0.0296493	AGCUUAU	ENST00000366930.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2 	ENST00000366929.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2
hg19_v2_chr11_-_79151695_79151710	0.0274505	AGCUUAU	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr8_-_57123815_57123867	0.02745	AGCUUAU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr11_-_115375107_115375283	0.026792	AGCUUAU	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr2_+_86947296_86947434	0.0263446	AGCUUAU	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr16_+_4364762_4364762	0.0255075	AGCUUAU	ENST00000262366.3|GLIS2|ENSG00000126603.4|GLIS family zinc finger 2
hg19_v2_chr5_-_160973649_160973713	0.0250894	AGCUUAU	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chr8_-_9008206_9008222	0.0236132	AGCUUAU	ENST00000310455.3|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr12_-_121342170_121342183	0.023346	AGCUUAU	ENST00000353487.2|SPPL3|ENSG00000157837.11|signal peptide peptidase like 3
hg19_v2_chr8_-_10588010_10588030	0.0229063	AGCUUAU	ENST00000304501.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7
hg19_v2_chr5_+_56111361_56111403	0.0223669	AGCUUAU	ENST00000399503.3|MAP3K1|ENSG00000095015.5|mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase
hg19_v2_chr14_+_33408449_33408525	0.0222336	AGCUUAU	ENST00000346562.2|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000341321.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000548645.1|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000356141.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000357798.5|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3
hg19_v2_chr15_-_38856836_38857029	0.0222276	AGCUUAU	ENST00000450598.2|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000559830.1|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000558164.1|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated) 	ENST00000310803.5|RASGRP1|ENSG00000172575.7|RAS guanyl releasing protein 1 (calcium and DAG-regulated)
hg19_v2_chr8_-_10697281_10697365	0.0220847	AGCUUAU	ENST00000524114.1|PINX1|ENSG00000254093.4|PIN2/TERF1 interacting, telomerase inhibitor 1 	ENST00000553390.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7 	ENST00000554914.1|SOX7|ENSG00000258724.1|Transcription factor SOX-7; Uncharacterized protein; cDNA FLJ58508, highly similar to Transcription factor SOX-7
hg19_v2_chr14_-_99737565_99737617	0.0215571	AGCUUAU	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr17_-_32690239_32690259	0.021473	AGCUUAU	ENST00000225842.3|CCL1|ENSG00000108702.3|chemokine (C-C motif) ligand 1
hg19_v2_chr13_+_73632897_73632930	0.0203059	AGCUUAU	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr11_-_1593150_1593150	0.0200169	AGCUUAU	ENST00000397374.3|DUSP8|ENSG00000184545.6|dual specificity phosphatase 8
hg19_v2_chr7_-_83824169_83824217	0.0199915	AGCUUAU	ENST00000265362.4|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr1_-_19283163_19283180	0.0192099	AGCUUAU	ENST00000455833.2|IFFO2|ENSG00000169991.6|intermediate filament family orphan 2
hg19_v2_chr3_+_186648274_186648301	0.018958	AGCUUAU	ENST00000169298.3|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr4_-_87281224_87281375	0.0188483	AGCUUAU	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr2_+_148602058_148602185	0.018617	AGCUUAU	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr17_+_58755184_58755261	0.0169092	AGCUUAU	ENST00000589222.1|BCAS3|ENSG00000141376.16|breast carcinoma amplified sequence 3 	ENST00000407086.3|BCAS3|ENSG00000141376.16|breast carcinoma amplified sequence 3 	ENST00000390652.5|BCAS3|ENSG00000141376.16|breast carcinoma amplified sequence 3
hg19_v2_chr5_+_135364584_135364691	0.0167632	AGCUUAU	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr4_-_111544254_111544270	0.0162204	AGCUUAU	ENST00000306732.3|PITX2|ENSG00000164093.11|paired-like homeodomain 2
hg19_v2_chr4_-_89744457_89744512	0.0153076	AGCUUAU	ENST00000395002.2|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr10_+_75757863_75757897	0.0149867	AGCUUAU	ENST00000372755.3|VCL|ENSG00000035403.12|vinculin 	ENST00000211998.4|VCL|ENSG00000035403.12|vinculin 	ENST00000417648.2|VCL|ENSG00000035403.12|vinculin
hg19_v2_chr13_-_41706864_41706963	0.014781	AGCUUAU	ENST00000379485.1|KBTBD6|ENSG00000165572.6|kelch repeat and BTB (POZ) domain containing 6 	ENST00000499385.2|KBTBD6|ENSG00000165572.6|kelch repeat and BTB (POZ) domain containing 6
hg19_v2_chr17_+_59477233_59477263	0.014103	AGCUUAU	ENST00000240328.3|TBX2|ENSG00000121068.9|T-box 2
hg19_v2_chr17_+_17942594_17942606	0.0139628	AGCUUAU	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr1_+_178694300_178694346	0.0136963	AGCUUAU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr2_+_70142189_70142223	0.0136922	AGCUUAU	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr8_+_61591337_61591393	0.0135294	AGCUUAU	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr12_-_45269430_45269440	0.0128195	AGCUUAU	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr10_-_94003003_94003013	0.0127181	AGCUUAU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr9_-_34589700_34589709	0.0125109	AGCUUAU	ENST00000351266.4|CNTFR|ENSG00000122756.10|ciliary neurotrophic factor receptor
hg19_v2_chr4_+_144257915_144258009	0.0124035	AGCUUAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr10_-_12238071_12238154	0.0122187	AGCUUAU	ENST00000491614.1|NUDT5|ENSG00000165609.8|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENST00000537776.1|NUDT5|ENSG00000165609.8|nudix (nucleoside diphosphate linked moiety X)-type motif 5
hg19_v2_chr8_+_87354945_87355012	0.0114525	AGCUUAU	ENST00000517970.1|WWP1|ENSG00000123124.9|WW domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr15_-_42840961_42841005	0.0111486	AGCUUAU	ENST00000563454.1|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000397130.3|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000570160.1|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57 	ENST00000323443.2|LRRC57|ENSG00000180979.5|leucine rich repeat containing 57
hg19_v2_chr10_+_72164135_72164135	0.0111328	AGCUUAU	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr15_+_66161871_66161893	0.0110381	AGCUUAU	ENST00000569896.1|RAB11A|ENSG00000103769.5|RAB11A, member RAS oncogene family
hg19_v2_chr14_+_57735614_57735629	0.0110194	AGCUUAU	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chr4_-_140098339_140098392	0.0103488	AGCUUAU	ENST00000394235.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr12_+_65563329_65563373	0.0099536	AGCUUAU	ENST00000308330.2|LEMD3|ENSG00000174106.2|LEM domain containing 3
hg19_v2_chr6_+_148663729_148663847	0.00909697	AGCUUAU	ENST00000367467.3|SASH1|ENSG00000111961.12|SAM and SH3 domain containing 1
hg19_v2_chr17_-_40540377_40540481	0.00903598	AGCUUAU	ENST00000404395.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000389272.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000585517.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000588065.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr10_-_14590644_14590669	0.00890248	AGCUUAU	ENST00000378470.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr17_+_36452989_36453152	0.00888156	AGCUUAU	ENST00000312513.5|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45 	ENST00000582535.1|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45
hg19_v2_chrX_-_20284958_20285039	0.00842093	AGCUUAU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chrX_-_54384425_54384495	0.00835895	AGCUUAU	ENST00000375169.3|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3 	ENST00000354646.2|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3
hg19_v2_chr16_-_4292071_4292088	0.00812278	AGCUUAU	ENST00000399609.3|SRL|ENSG00000185739.9|sarcalumenin
hg19_v2_chr5_+_172483347_172483407	0.00804994	AGCUUAU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr17_+_21187976_21187998	0.00781256	AGCUUAU	ENST00000342679.4|MAP2K3|ENSG00000034152.14|mitogen-activated protein kinase kinase 3
hg19_v2_chr2_-_201936302_201936416	0.00759849	AGCUUAU	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr14_+_57046500_57046529	0.0073423	AGCUUAU	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr16_+_12070567_12070623	0.00730881	AGCUUAU	ENST00000566228.1|SNX29|ENSG00000048471.9|sorting nexin 29
hg19_v2_chr15_+_59279851_59279880	0.00720245	AGCUUAU	ENST00000348370.4|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000434298.1|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000559160.1|RNF111|ENSG00000157450.11|ring finger protein 111
hg19_v2_chr22_+_38302285_38302361	0.00698575	AGCUUAU	ENST00000215957.6|MICALL1|ENSG00000100139.9|MICAL-like 1
hg19_v2_chr1_+_28285973_28285973	0.00681626	AGCUUAU	ENST00000373884.5|XKR8|ENSG00000158156.7|XK, Kell blood group complex subunit-related family, member 8
hg19_v2_chr5_+_63802109_63802139	0.0064042	AGCUUAU	ENST00000334025.2|RGS7BP|ENSG00000186479.4|regulator of G-protein signaling 7 binding protein
hg19_v2_chr12_-_123011536_123011547	0.00636689	AGCUUAU	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chr4_+_38665810_38665827	0.00625814	AGCUUAU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr9_+_15553055_15553101	0.00625781	AGCUUAU	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr5_+_10353780_10353890	0.00623638	AGCUUAU	ENST00000449913.2|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000503788.1|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000274140.5|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase
hg19_v2_chr12_+_69864129_69864222	0.00616016	AGCUUAU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr16_-_75498553_75498635	0.00613588	AGCUUAU	ENST00000569276.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000357613.4|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000561878.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000567194.1|RP11-77K12.1|ENSG00000261717.1|Uncharacterized protein  	ENST00000566980.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A
hg19_v2_chr12_+_27932803_27932953	0.00611246	AGCUUAU	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr7_+_102715315_102715380	0.00607326	AGCUUAU	ENST00000428183.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000323716.3|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000441711.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000454559.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000425331.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000541300.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10
hg19_v2_chr3_-_72496035_72496069	0.00607164	AGCUUAU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr19_+_1286097_1286153	0.00606257	AGCUUAU	ENST00000215368.2|EFNA2|ENSG00000099617.2|ephrin-A2
hg19_v2_chr9_-_16870704_16870841	0.00603058	AGCUUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chrX_-_80065146_80065250	0.00599262	AGCUUAU	ENST00000373275.4|BRWD3|ENSG00000165288.10|bromodomain and WD repeat domain containing 3
hg19_v2_chr5_+_125758813_125758845	0.00585831	AGCUUAU	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr16_-_20911641_20911720	0.00571586	AGCUUAU	ENST00000564349.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000324344.4|DCUN1D3|ENSG00000188215.5|DCN1, defective in cullin neddylation 1, domain containing 3
hg19_v2_chr20_-_3996036_3996153	0.00544308	AGCUUAU	ENST00000336095.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr20_-_23030296_23030378	0.00492624	AGCUUAU	ENST00000377103.2|THBD|ENSG00000178726.6|thrombomodulin
hg19_v2_chrX_+_123095155_123095179	0.00482077	AGCUUAU	ENST00000371160.1|STAG2|ENSG00000101972.14|stromal antigen 2 	ENST00000435103.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr17_+_38278530_38278605	0.00459951	AGCUUAU	ENST00000398532.4|MSL1|ENSG00000188895.7|male-specific lethal 1 homolog (Drosophila)
hg19_v2_chr9_-_123476719_123476810	0.00438586	AGCUUAU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr5_+_139493665_139493718	0.00393782	AGCUUAU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr6_-_159466136_159466184	0.00379512	AGCUUAU	ENST00000367066.3|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein 	ENST00000326965.6|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein
hg19_v2_chr12_-_117319236_117319252	0.00370269	AGCUUAU	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr5_+_179921430_179921461	0.00368768	AGCUUAU	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr20_-_10654639_10654694	0.00368365	AGCUUAU	ENST00000254958.5|JAG1|ENSG00000101384.7|jagged 1
hg19_v2_chr8_-_81787006_81787031	0.00345991	AGCUUAU	ENST00000327835.3|ZNF704|ENSG00000164684.9|zinc finger protein 704
hg19_v2_chr12_+_48516357_48516436	0.00333865	AGCUUAU	ENST00000549022.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle 	ENST00000547587.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle 	ENST00000312352.7|PFKM|ENSG00000152556.11|phosphofructokinase, muscle
hg19_v2_chr2_+_198318147_198318182	0.0033095	AGCUUAU	ENST00000263960.2|COQ10B|ENSG00000115520.4|coenzyme Q10 homolog B (S. cerevisiae)
hg19_v2_chr1_+_33005020_33005077	0.00326558	AGCUUAU	ENST00000373510.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A 	ENST00000316459.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A
hg19_v2_chr10_+_98741041_98741041	0.00312677	AGCUUAU	ENST00000286067.2|C10orf12|ENSG00000155640.5|chromosome 10 open reading frame 12
hg19_v2_chr12_+_53848505_53848532	0.00305026	AGCUUAU	ENST00000552819.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000455667.3|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2
hg19_v2_chr7_-_113559104_113559120	0.0029813	AGCUUAU	ENST00000284601.3|PPP1R3A|ENSG00000154415.3|protein phosphatase 1, regulatory subunit 3A
hg19_v2_chr18_-_29522989_29523104	0.00270566	AGCUUAU	ENST00000582539.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000283351.4|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000582513.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8
hg19_v2_chr5_+_154238096_154238119	0.00269159	AGCUUAU	ENST00000517568.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000524105.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000285896.6|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr2_+_166326157_166326216	0.0026783	AGCUUAU	ENST00000421875.1|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3 	ENST00000314499.7|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3 	ENST00000409664.1|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr15_+_59063478_59063561	0.00255565	AGCUUAU	ENST00000559228.1|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B 	ENST00000450403.2|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B
hg19_v2_chr3_+_57741957_57742045	0.00251167	AGCUUAU	ENST00000295951.3|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr3_+_181429704_181429722	0.00238164	AGCUUAU	ENST00000431565.2|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2 	ENST00000325404.1|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2
hg19_v2_chr3_+_77088989_77089037	0.00231572	AGCUUAU	ENST00000461745.1|ROBO2|ENSG00000185008.13|roundabout, axon guidance receptor, homolog 2 (Drosophila)
hg19_v2_chr16_+_22019404_22019604	0.00228606	AGCUUAU	ENST00000542527.2|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000569656.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000562695.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52
hg19_v2_chr10_+_76871454_76871467	0.00222433	AGCUUAU	ENST00000372687.4|SAMD8|ENSG00000156671.8|sterile alpha motif domain containing 8
hg19_v2_chr5_+_86564739_86564791	0.00220717	AGCUUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr17_+_46184911_46184951	0.00200519	AGCUUAU	ENST00000580219.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000452859.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000393405.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000439357.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000359238.2|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr3_+_85008089_85008189	0.00194109	AGCUUAU	ENST00000383699.3|CADM2|ENSG00000175161.9|cell adhesion molecule 2
hg19_v2_chr9_+_133971909_133971943	0.0017407	AGCUUAU	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr15_+_40733387_40733416	0.00152121	AGCUUAU	ENST00000416165.1|BAHD1|ENSG00000140320.7|bromo adjacent homology domain containing 1
hg19_v2_chr7_+_114055052_114055378	0.00148494	AGCUUAU	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr1_+_224301787_224301836	0.00148161	AGCUUAU	ENST00000366862.5|FBXO28|ENSG00000143756.7|F-box protein 28 	ENST00000424254.2|FBXO28|ENSG00000143756.7|F-box protein 28
hg19_v2_chr11_-_44331679_44331716	0.00146054	AGCUUAU	ENST00000329255.3|ALX4|ENSG00000052850.5|ALX homeobox 4
hg19_v2_chr17_+_30264014_30264086	0.0013419	AGCUUAU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr8_+_56014949_56015048	0.00127537	AGCUUAU	ENST00000327381.6|XKR4|ENSG00000206579.7|XK, Kell blood group complex subunit-related family, member 4
hg19_v2_chr17_+_61627814_61627871	0.0012653	AGCUUAU	ENST00000310827.4|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000431926.1|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7 	ENST00000415273.2|DCAF7|ENSG00000136485.10|DDB1 and CUL4 associated factor 7
hg19_v2_chr12_+_12764773_12764852	0.00114999	AGCUUAU	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chr13_-_41768654_41768714	0.00112774	AGCUUAU	ENST00000379483.3|KBTBD7|ENSG00000120696.8|kelch repeat and BTB (POZ) domain containing 7
hg19_v2_chr17_+_60536002_60536040	0.00107586	AGCUUAU	ENST00000582809.1|TLK2|ENSG00000146872.13|tousled-like kinase 2
hg19_v2_chr5_+_170846640_170846660	0.000987244	AGCUUAU	ENST00000274625.5|FGF18|ENSG00000156427.7|fibroblast growth factor 18
hg19_v2_chr2_+_70314579_70314590	0.000824397	AGCUUAU	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr1_+_36273743_36273773	0.000790653	AGCUUAU	ENST00000373210.3|AGO4|ENSG00000134698.10|argonaute RISC catalytic component 4
hg19_v2_chr12_-_12419703_12419811	0.000738609	AGCUUAU	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr4_-_102268628_102268693	0.000599134	AGCUUAU	ENST00000323055.6|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000512215.1|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000394854.3|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr7_+_18535346_18535399	0.000546868	AGCUUAU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr12_-_40013553_40013635	0.000531927	AGCUUAU	ENST00000308666.3|ABCD2|ENSG00000173208.3|ATP-binding cassette, sub-family D (ALD), member 2
hg19_v2_chr3_+_98451275_98451361	0.000450518	AGCUUAU	ENST00000265261.6|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000497008.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chr11_+_109292846_109292875	0.000373982	AGCUUAU	ENST00000327419.6|C11orf87|ENSG00000185742.6|chromosome 11 open reading frame 87
hg19_v2_chr4_+_99916765_99916776	0.000225976	AGCUUAU	ENST00000296411.6|METAP1|ENSG00000164024.7|methionyl aminopeptidase 1
hg19_v2_chr6_+_4021554_4021656	0.00021769	AGCUUAU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr3_+_28283069_28283168	9.59255e-06	AGCUUAU	ENST00000466830.1|CMC1|ENSG00000187118.8|C-x(9)-C motif containing 1 	ENST00000423894.1|CMC1|ENSG00000187118.8|C-x(9)-C motif containing 1
