hg19_v2_chr2_+_189839046_189839105	1.11812	AGGUAGU	ENST00000304636.3|COL3A1|ENSG00000168542.8|collagen, type III, alpha 1 	ENST00000317840.5|COL3A1|ENSG00000168542.8|collagen, type III, alpha 1
hg19_v2_chr7_+_94023873_94023873	0.882451	AGGUAGU	ENST00000297268.6|COL1A2|ENSG00000164692.13|collagen, type I, alpha 2
hg19_v2_chr17_-_48278983_48278999	0.501168	AGGUAGU	ENST00000225964.5|COL1A1|ENSG00000108821.9|collagen, type I, alpha 1
hg19_v2_chr17_+_47074758_47074787	0.426275	AGGUAGU	ENST00000290341.3|IGF2BP1|ENSG00000159217.5|insulin-like growth factor 2 mRNA binding protein 1
hg19_v2_chr1_-_92351769_92351787	0.4209	AGGUAGU	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr5_+_172068232_172068320	0.362074	AGGUAGU	ENST00000520919.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000522853.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000369800.5|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B
hg19_v2_chr1_+_164528866_164528877	0.349853	AGGUAGU	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr18_+_6834472_6834495	0.324219	AGGUAGU	ENST00000581099.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000419673.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000531294.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr7_-_23510086_23510118	0.294683	AGGUAGU	ENST00000258729.3|IGF2BP3|ENSG00000136231.9|insulin-like growth factor 2 mRNA binding protein 3
hg19_v2_chr5_-_158526756_158526797	0.257266	AGGUAGU	ENST00000313708.6|EBF1|ENSG00000164330.12|early B-cell factor 1 	ENST00000517373.1|EBF1|ENSG00000164330.12|early B-cell factor 1
hg19_v2_chr3_+_110790590_110790603	0.231072	AGGUAGU	ENST00000485303.1|PVRL3|ENSG00000177707.6|poliovirus receptor-related 3
hg19_v2_chr17_+_68165657_68165688	0.226559	AGGUAGU	ENST00000243457.3|KCNJ2|ENSG00000123700.4|potassium inwardly-rectifying channel, subfamily J, member 2
hg19_v2_chr16_+_447209_447225	0.179812	AGGUAGU	ENST00000382940.4|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4 	ENST00000219479.2|NME4|ENSG00000103202.8|NME/NM23 nucleoside diphosphate kinase 4
hg19_v2_chr14_-_88459503_88459615	0.174563	AGGUAGU	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr12_+_66217911_66218018	0.172156	AGGUAGU	ENST00000403681.2|HMGA2|ENSG00000149948.9|high mobility group AT-hook 2
hg19_v2_chr7_-_27196267_27196311	0.165562	AGGUAGU	ENST00000242159.3|HOXA7|ENSG00000122592.6|homeobox A7
hg19_v2_chr5_+_153825510_153825529	0.160501	AGGUAGU	ENST00000297109.6|SAP30L|ENSG00000164576.7|SAP30-like
hg19_v2_chr10_+_180987_181009	0.158637	AGGUAGU	ENST00000381591.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chrX_-_83757399_83757487	0.146732	AGGUAGU	ENST00000373177.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000297977.5|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000506585.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000449553.2|HDX|ENSG00000165259.9|highly divergent homeobox
hg19_v2_chr10_+_1095416_1095482	0.145348	AGGUAGU	ENST00000358220.1|WDR37|ENSG00000047056.10|WD repeat domain 37
hg19_v2_chr9_+_99212403_99212536	0.131538	AGGUAGU	ENST00000375251.3|HABP4|ENSG00000130956.9|hyaluronan binding protein 4 	ENST00000375249.4|HABP4|ENSG00000130956.9|hyaluronan binding protein 4
hg19_v2_chr5_-_131132614_131132648	0.129032	AGGUAGU	ENST00000307968.7|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000307954.8|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr17_+_55333876_55333939	0.128995	AGGUAGU	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chrX_+_134166333_134166371	0.128281	AGGUAGU	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr8_+_81397876_81397902	0.121017	AGGUAGU	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr7_-_27183263_27183287	0.117331	AGGUAGU	ENST00000222726.3|HOXA5|ENSG00000106004.4|homeobox A5
hg19_v2_chr17_+_27717415_27717618	0.117118	AGGUAGU	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr2_+_204192942_204193038	0.111187	AGGUAGU	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chr14_+_90863327_90863356	0.0996893	AGGUAGU	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr22_+_50781723_50781784	0.0996267	AGGUAGU	ENST00000359139.3|PPP6R2|ENSG00000100239.11|protein phosphatase 6, regulatory subunit 2 	ENST00000395741.3|PPP6R2|ENSG00000100239.11|protein phosphatase 6, regulatory subunit 2 	ENST00000395744.3|PPP6R2|ENSG00000100239.11|protein phosphatase 6, regulatory subunit 2
hg19_v2_chr3_-_21792838_21792927	0.0994763	AGGUAGU	ENST00000281523.2|ZNF385D|ENSG00000151789.5|zinc finger protein 385D
hg19_v2_chr4_+_55095264_55095390	0.0952881	AGGUAGU	ENST00000257290.5|PDGFRA|ENSG00000134853.7|platelet-derived growth factor receptor, alpha polypeptide
hg19_v2_chr9_-_79520989_79521003	0.0917447	AGGUAGU	ENST00000376713.3|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila) 	ENST00000376718.3|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila) 	ENST00000428286.1|PRUNE2|ENSG00000106772.13|prune homolog 2 (Drosophila)
hg19_v2_chr19_+_47104493_47104549	0.0858767	AGGUAGU	ENST00000291295.9|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000597743.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr15_+_45879321_45879438	0.0839902	AGGUAGU	ENST00000220531.3|BLOC1S6|ENSG00000104164.6|biogenesis of lysosomal organelles complex-1, subunit 6, pallidin 	ENST00000567461.1|BLOC1S6|ENSG00000104164.6|biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
hg19_v2_chr5_+_49961727_49961740	0.0834624	AGGUAGU	ENST00000505697.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503750.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000514342.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr12_-_76478686_76478813	0.0817786	AGGUAGU	ENST00000261182.8|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr16_+_70332956_70333130	0.0811363	AGGUAGU	ENST00000288071.6|DDX19B|ENSG00000157349.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 	ENST00000393657.2|DDX19B|ENSG00000157349.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 	ENST00000355992.3|DDX19B|ENSG00000157349.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 	ENST00000567706.1|RP11-529K1.3|ENSG00000260537.1|Uncharacterized protein
hg19_v2_chr1_-_115259337_115259515	0.078724	AGGUAGU	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr1_+_193091080_193091222	0.0784678	AGGUAGU	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr4_+_56212270_56212298	0.0777203	AGGUAGU	ENST00000264228.4|SRD5A3|ENSG00000128039.6|steroid 5 alpha-reductase 3
hg19_v2_chr20_+_277737_277737	0.0771002	AGGUAGU	ENST00000382352.3|ZCCHC3|ENSG00000177764.6|zinc finger, CCHC domain containing 3
hg19_v2_chr15_+_38544476_38544574	0.0758023	AGGUAGU	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr18_-_18691739_18691812	0.0734096	AGGUAGU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr6_+_34204642_34204664	0.0713325	AGGUAGU	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr6_-_35464727_35464738	0.067868	AGGUAGU	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr3_+_61547585_61547585	0.0672948	AGGUAGU	ENST00000295874.10|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G 	ENST00000474889.1|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G
hg19_v2_chr12_+_12764773_12764852	0.0670765	AGGUAGU	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chrX_+_118108571_118108589	0.0650002	AGGUAGU	ENST00000304778.7|LONRF3|ENSG00000175556.12|LON peptidase N-terminal domain and ring finger 3
hg19_v2_chr12_+_65004292_65004306	0.0640624	AGGUAGU	ENST00000542104.1|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3 	ENST00000336061.2|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3
hg19_v2_chr20_-_5591626_5591677	0.0638473	AGGUAGU	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr12_-_59313270_59313327	0.0637455	AGGUAGU	ENST00000379141.4|LRIG3|ENSG00000139263.7|leucine-rich repeats and immunoglobulin-like domains 3
hg19_v2_chrX_+_95939711_95939786	0.0628526	AGGUAGU	ENST00000373049.4|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2 	ENST00000324765.8|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2
hg19_v2_chr20_+_3869423_3869486	0.0590715	AGGUAGU	ENST00000497424.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr3_-_47823298_47823423	0.0578168	AGGUAGU	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr3_+_50712672_50712703	0.0572605	AGGUAGU	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr1_+_179923873_179923954	0.0552233	AGGUAGU	ENST00000367607.3|CEP350|ENSG00000135837.11|centrosomal protein 350kDa 	ENST00000491495.2|CEP350|ENSG00000135837.11|centrosomal protein 350kDa
hg19_v2_chr17_+_8213590_8213603	0.0548731	AGGUAGU	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr17_-_9929581_9929626	0.0548163	AGGUAGU	ENST00000437099.2|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000396115.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr9_-_125693757_125693818	0.0545317	AGGUAGU	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr14_-_57735528_57735726	0.0505284	AGGUAGU	ENST00000340918.7|EXOC5|ENSG00000070367.11|exocyst complex component 5 	ENST00000413566.2|EXOC5|ENSG00000070367.11|exocyst complex component 5
hg19_v2_chr12_-_69326940_69326993	0.0489699	AGGUAGU	ENST00000549781.1|CPM|ENSG00000135678.7|carboxypeptidase M 	ENST00000548262.1|CPM|ENSG00000135678.7|carboxypeptidase M 	ENST00000551568.1|CPM|ENSG00000135678.7|carboxypeptidase M 	ENST00000548954.1|CPM|ENSG00000135678.7|carboxypeptidase M
hg19_v2_chr2_+_149402553_149402568	0.0478585	AGGUAGU	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr6_+_107349392_107349461	0.047624	AGGUAGU	ENST00000443043.1|C6orf203|ENSG00000130349.5|chromosome 6 open reading frame 203 	ENST00000405204.2|C6orf203|ENSG00000130349.5|chromosome 6 open reading frame 203 	ENST00000311381.5|C6orf203|ENSG00000130349.5|chromosome 6 open reading frame 203
hg19_v2_chr11_-_796197_796361	0.0460195	AGGUAGU	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr1_+_153232160_153232176	0.0454731	AGGUAGU	ENST00000368742.3|LOR|ENSG00000203782.5|loricrin
hg19_v2_chr1_+_109102652_109102728	0.0447031	AGGUAGU	ENST00000370035.3|FAM102B|ENSG00000162636.11|family with sequence similarity 102, member B 	ENST00000405454.1|FAM102B|ENSG00000162636.11|family with sequence similarity 102, member B
hg19_v2_chr9_+_6413317_6413418	0.0443278	AGGUAGU	ENST00000276893.5|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 	ENST00000381373.3|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
hg19_v2_chr16_-_89007491_89007608	0.0441469	AGGUAGU	ENST00000327483.5|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000564416.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr3_-_28390581_28390618	0.0432227	AGGUAGU	ENST00000479665.1|AZI2|ENSG00000163512.9|5-azacytidine induced 2
hg19_v2_chr9_+_109625378_109625458	0.0429029	AGGUAGU	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr4_+_106473768_106473804	0.0423758	AGGUAGU	ENST00000265154.2|ARHGEF38|ENSG00000236699.4|Rho guanine nucleotide exchange factor (GEF) 38 	ENST00000420470.2|ARHGEF38|ENSG00000236699.4|Rho guanine nucleotide exchange factor (GEF) 38
hg19_v2_chr1_+_50574585_50574638	0.0422497	AGGUAGU	ENST00000371824.1|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4 	ENST00000371823.4|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr2_-_50574856_50574892	0.0418357	AGGUAGU	ENST00000342183.5|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chrX_-_134186144_134186228	0.041351	AGGUAGU	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr14_+_55493920_55494013	0.0412614	AGGUAGU	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr19_-_47975417_47975441	0.0405134	AGGUAGU	ENST00000236877.6|SLC8A2|ENSG00000118160.9|solute carrier family 8 (sodium/calcium exchanger), member 2
hg19_v2_chr10_+_72238517_72238595	0.0394459	AGGUAGU	ENST00000263563.6|PALD1|ENSG00000107719.8|phosphatase domain containing, paladin 1
hg19_v2_chr12_-_110318263_110318320	0.0393009	AGGUAGU	ENST00000318348.4|GLTP|ENSG00000139433.5|glycolipid transfer protein
hg19_v2_chr7_-_120498357_120498456	0.0387812	AGGUAGU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr2_+_113239710_113239753	0.0383521	AGGUAGU	ENST00000233336.6|TTL|ENSG00000114999.7|tubulin tyrosine ligase
hg19_v2_chr10_-_38146510_38146576	0.0378039	AGGUAGU	ENST00000395867.3|ZNF248|ENSG00000198105.7|zinc finger protein 248
hg19_v2_chr2_-_128615681_128615737	0.0375219	AGGUAGU	ENST00000409955.1|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D 	ENST00000272645.4|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D
hg19_v2_chr17_-_71228357_71228533	0.0369752	AGGUAGU	ENST00000583024.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000403627.3|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000405159.3|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000581110.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A
hg19_v2_chr12_-_112123726_112123809	0.0369593	AGGUAGU	ENST00000419234.4|BRAP|ENSG00000089234.11|BRCA1 associated protein
hg19_v2_chr12_+_54402790_54402832	0.0363594	AGGUAGU	ENST00000040584.4|HOXC8|ENSG00000037965.4|homeobox C8
hg19_v2_chr17_+_28705921_28706000	0.0350835	AGGUAGU	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr13_-_103053946_103054124	0.0348171	AGGUAGU	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr7_+_104654623_104654669	0.0339826	AGGUAGU	ENST00000311117.3|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334877.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000257745.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334914.7|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000478990.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000495267.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000476671.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E
hg19_v2_chr14_+_19553365_19553365	0.0332708	AGGUAGU	ENST00000409832.3|POTEG|ENSG00000222036.3|POTE ankyrin domain family, member G
hg19_v2_chr16_+_69221028_69221092	0.0330716	AGGUAGU	ENST00000336278.4|SNTB2|ENSG00000168807.12|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
hg19_v2_chr8_-_110988070_110988087	0.0307327	AGGUAGU	ENST00000524391.1|KCNV1|ENSG00000164794.4|potassium channel, subfamily V, member 1
hg19_v2_chr20_-_32700075_32700138	0.030409	AGGUAGU	ENST00000374980.2|EIF2S2|ENSG00000125977.6|eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa
hg19_v2_chr1_+_113615794_113615884	0.0302867	AGGUAGU	ENST00000361127.5|LRIG2|ENSG00000198799.7|leucine-rich repeats and immunoglobulin-like domains 2
hg19_v2_chr17_+_2699697_2699776	0.0288697	AGGUAGU	ENST00000254695.8|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000366401.4|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000542807.1|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2
hg19_v2_chr15_-_65715401_65715421	0.0268601	AGGUAGU	ENST00000352385.2|IGDCC4|ENSG00000103742.7|immunoglobulin superfamily, DCC subclass, member 4
hg19_v2_chr14_+_58666824_58666902	0.0268156	AGGUAGU	ENST00000254286.4|ACTR10|ENSG00000131966.9|actin-related protein 10 homolog (S. cerevisiae)
hg19_v2_chr2_+_179345173_179345221	0.0260835	AGGUAGU	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr8_+_121137333_121137352	0.0258891	AGGUAGU	ENST00000309791.4|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000297848.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000247781.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1
hg19_v2_chr9_+_133710453_133710453	0.025803	AGGUAGU	ENST00000318560.5|ABL1|ENSG00000097007.13|c-abl oncogene 1, non-receptor tyrosine kinase
hg19_v2_chr15_+_52043758_52043809	0.025192	AGGUAGU	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr8_+_59465728_59465826	0.024779	AGGUAGU	ENST00000260130.4|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000422546.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000447182.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000413219.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000424270.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000523483.1|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000520168.1|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin)
hg19_v2_chr20_+_306221_306239	0.0244133	AGGUAGU	ENST00000342665.2|SOX12|ENSG00000177732.6|SRY (sex determining region Y)-box 12
hg19_v2_chr15_-_50411412_50411437	0.0241504	AGGUAGU	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr11_-_110167352_110167447	0.023832	AGGUAGU	ENST00000533991.1|RDX|ENSG00000137710.10|radixin 	ENST00000528498.1|RDX|ENSG00000137710.10|radixin 	ENST00000405097.1|RDX|ENSG00000137710.10|radixin 	ENST00000528900.1|RDX|ENSG00000137710.10|radixin 	ENST00000530301.1|RDX|ENSG00000137710.10|radixin 	ENST00000343115.4|RDX|ENSG00000137710.10|radixin
hg19_v2_chr2_+_170590321_170590408	0.0236265	AGGUAGU	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr5_-_153857819_153857824	0.022641	AGGUAGU	ENST00000231121.2|HAND1|ENSG00000113196.2|heart and neural crest derivatives expressed 1
hg19_v2_chr22_-_17602200_17602265	0.0218534	AGGUAGU	ENST00000399875.1|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr7_+_88388628_88388682	0.0217443	AGGUAGU	ENST00000333190.4|ZNF804B|ENSG00000182348.5|zinc finger protein 804B
hg19_v2_chrX_-_41782249_41782287	0.0215403	AGGUAGU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr11_+_111945011_111945069	0.0206851	AGGUAGU	ENST00000532163.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000280352.9|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000530104.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000526879.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000393047.3|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57 	ENST00000525785.1|C11orf57|ENSG00000150776.13|chromosome 11 open reading frame 57
hg19_v2_chr12_+_118814344_118814369	0.020333	AGGUAGU	ENST00000397564.2|SUDS3|ENSG00000111707.7|suppressor of defective silencing 3 homolog (S. cerevisiae)
hg19_v2_chr3_+_101504200_101504244	0.0198871	AGGUAGU	ENST00000422132.1|NXPE3|ENSG00000144815.10|neurexophilin and PC-esterase domain family, member 3
hg19_v2_chr12_+_68042495_68042508	0.019502	AGGUAGU	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr8_-_23315190_23315235	0.0187641	AGGUAGU	ENST00000356206.6|ENTPD4|ENSG00000197217.8|ectonucleoside triphosphate diphosphohydrolase 4 	ENST00000358689.4|ENTPD4|ENSG00000197217.8|ectonucleoside triphosphate diphosphohydrolase 4 	ENST00000417069.2|ENTPD4|ENSG00000197217.8|ectonucleoside triphosphate diphosphohydrolase 4
hg19_v2_chr1_-_21113105_21113186	0.017403	AGGUAGU	ENST00000375000.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000419490.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000414993.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000443615.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000312239.5|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3
hg19_v2_chr5_+_148724993_148725102	0.0172371	AGGUAGU	ENST00000513661.1|GRPEL2|ENSG00000164284.10|GrpE-like 2, mitochondrial (E. coli) 	ENST00000329271.3|GRPEL2|ENSG00000164284.10|GrpE-like 2, mitochondrial (E. coli) 	ENST00000416916.2|GRPEL2|ENSG00000164284.10|GrpE-like 2, mitochondrial (E. coli)
hg19_v2_chr12_+_110940005_110940100	0.0171311	AGGUAGU	ENST00000409246.1|RAD9B|ENSG00000151164.14|RAD9 homolog B (S. pombe) 	ENST00000392672.4|RAD9B|ENSG00000151164.14|RAD9 homolog B (S. pombe) 	ENST00000409300.1|RAD9B|ENSG00000151164.14|RAD9 homolog B (S. pombe) 	ENST00000409425.1|RAD9B|ENSG00000151164.14|RAD9 homolog B (S. pombe)
hg19_v2_chr9_-_72287191_72287222	0.0161278	AGGUAGU	ENST00000265381.4|APBA1|ENSG00000107282.5|amyloid beta (A4) precursor protein-binding, family A, member 1
hg19_v2_chr14_-_20020272_20020272	0.0156059	AGGUAGU	ENST00000551509.1|POTEM|ENSG00000187537.9|POTE ankyrin domain family, member M
hg19_v2_chr7_+_94285637_94285689	0.01557	AGGUAGU	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chr7_+_18535346_18535399	0.0152196	AGGUAGU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr1_-_205601064_205601090	0.0148302	AGGUAGU	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr8_+_22102626_22102748	0.0144993	AGGUAGU	ENST00000519237.1|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 	ENST00000397802.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr4_+_17616253_17616275	0.0139984	AGGUAGU	ENST00000237380.7|MED28|ENSG00000118579.7|mediator complex subunit 28
hg19_v2_chr3_+_158991025_158991083	0.0139752	AGGUAGU	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr4_+_113066552_113066563	0.013935	AGGUAGU	ENST00000309733.5|C4orf32|ENSG00000174749.5|chromosome 4 open reading frame 32
hg19_v2_chr8_+_56014949_56015048	0.0137736	AGGUAGU	ENST00000327381.6|XKR4|ENSG00000206579.7|XK, Kell blood group complex subunit-related family, member 4
hg19_v2_chr4_-_18023350_18023499	0.0132983	AGGUAGU	ENST00000539056.1|LCORL|ENSG00000178177.10|ligand dependent nuclear receptor corepressor-like 	ENST00000382226.5|LCORL|ENSG00000178177.10|ligand dependent nuclear receptor corepressor-like 	ENST00000326877.4|LCORL|ENSG00000178177.10|ligand dependent nuclear receptor corepressor-like
hg19_v2_chr19_-_51054299_51054299	0.0127127	AGGUAGU	ENST00000599957.1|LRRC4B|ENSG00000131409.8|leucine rich repeat containing 4B
hg19_v2_chr4_-_42154895_42154895	0.0116364	AGGUAGU	ENST00000502486.1|BEND4|ENSG00000188848.11|BEN domain containing 4 	ENST00000504360.1|BEND4|ENSG00000188848.11|BEN domain containing 4
hg19_v2_chrX_-_24045303_24045303	0.0115722	AGGUAGU	ENST00000328046.8|KLHL15|ENSG00000174010.9|kelch-like family member 15
hg19_v2_chr18_-_24445729_24445782	0.0115439	AGGUAGU	ENST00000383168.4|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr9_-_14693417_14693469	0.0112362	AGGUAGU	ENST00000380916.4|ZDHHC21|ENSG00000175893.7|zinc finger, DHHC-type containing 21
hg19_v2_chr9_+_110045537_110045572	0.0110279	AGGUAGU	ENST00000358015.3|RAD23B|ENSG00000119318.8|RAD23 homolog B (S. cerevisiae)
hg19_v2_chr4_+_71587669_71587752	0.0107498	AGGUAGU	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr3_+_133293278_133293492	0.0105542	AGGUAGU	ENST00000508481.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000420115.2|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000504867.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000507408.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000511392.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000515421.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse)
hg19_v2_chr5_+_178286925_178287007	0.0102857	AGGUAGU	ENST00000322434.3|ZNF354B|ENSG00000178338.6|zinc finger protein 354B
hg19_v2_chr3_+_159557637_159557650	0.0099811	AGGUAGU	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chrX_+_135067576_135067634	0.00997145	AGGUAGU	ENST00000370701.1|SLC9A6|ENSG00000198689.5|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 	ENST00000370698.3|SLC9A6|ENSG00000198689.5|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 	ENST00000370695.4|SLC9A6|ENSG00000198689.5|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6
hg19_v2_chr6_+_133562472_133562556	0.00980728	AGGUAGU	ENST00000430974.2|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000367895.5|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000355167.3|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000355286.6|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila)
hg19_v2_chr21_+_30671189_30671207	0.00862829	AGGUAGU	ENST00000286800.3|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr3_+_196295482_196295559	0.00830001	AGGUAGU	ENST00000440469.1|FBXO45|ENSG00000174013.7|F-box protein 45 	ENST00000311630.6|FBXO45|ENSG00000174013.7|F-box protein 45
hg19_v2_chr17_-_61850894_61851135	0.00826838	AGGUAGU	ENST00000403162.3|CCDC47|ENSG00000108588.9|coiled-coil domain containing 47 	ENST00000582252.1|CCDC47|ENSG00000108588.9|coiled-coil domain containing 47 	ENST00000225726.5|CCDC47|ENSG00000108588.9|coiled-coil domain containing 47
hg19_v2_chr1_-_207224307_207224422	0.00740753	AGGUAGU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr9_-_135819987_135820020	0.00668603	AGGUAGU	ENST00000298552.3|TSC1|ENSG00000165699.9|tuberous sclerosis 1 	ENST00000403810.1|TSC1|ENSG00000165699.9|tuberous sclerosis 1
hg19_v2_chr16_+_70380732_70380819	0.00628405	AGGUAGU	ENST00000302243.7|DDX19A|ENSG00000168872.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A
hg19_v2_chr12_-_42877764_42877803	0.00602945	AGGUAGU	ENST00000455697.1|PRICKLE1|ENSG00000139174.6|prickle homolog 1 (Drosophila)
hg19_v2_chr16_-_30621663_30621718	0.00588385	AGGUAGU	ENST00000287461.3|ZNF689|ENSG00000156853.7|zinc finger protein 689
hg19_v2_chr21_-_39870339_39870443	0.00579267	AGGUAGU	ENST00000429727.2|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000398905.1|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000398907.1|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000453032.2|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000288319.7|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog
hg19_v2_chr12_-_498620_498693	0.00561761	AGGUAGU	ENST00000399788.2|KDM5A|ENSG00000073614.7|lysine (K)-specific demethylase 5A 	ENST00000382815.4|KDM5A|ENSG00000073614.7|lysine (K)-specific demethylase 5A
hg19_v2_chr12_-_25102252_25102393	0.00511212	AGGUAGU	ENST00000261192.7|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr12_+_12870055_12870119	0.0045241	AGGUAGU	ENST00000228872.4|CDKN1B|ENSG00000111276.6|cyclin-dependent kinase inhibitor 1B (p27, Kip1)
hg19_v2_chr12_-_77459306_77459365	0.00416702	AGGUAGU	ENST00000547316.1|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000416496.2|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000550669.1|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000322886.7|E2F7|ENSG00000165891.11|E2F transcription factor 7
hg19_v2_chr11_+_63580855_63580889	0.00361573	AGGUAGU	ENST00000294244.4|C11orf84|ENSG00000168005.4|chromosome 11 open reading frame 84
hg19_v2_chr18_+_67068228_67068291	0.00359954	AGGUAGU	ENST00000382713.5|DOK6|ENSG00000206052.6|docking protein 6
hg19_v2_chr20_+_37434329_37434371	0.00315479	AGGUAGU	ENST00000299824.1|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B 	ENST00000373331.2|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B
hg19_v2_chr9_-_111929560_111929571	0.00287343	AGGUAGU	ENST00000561981.2|FRRS1L|ENSG00000260230.2|ferric-chelate reductase 1-like
hg19_v2_chrX_+_2746850_2746863	0.00279869	AGGUAGU	ENST00000381163.3|GYG2|ENSG00000056998.14|glycogenin 2 	ENST00000338623.5|GYG2|ENSG00000056998.14|glycogenin 2 	ENST00000542787.1|GYG2|ENSG00000056998.14|glycogenin 2
hg19_v2_chr7_+_35840542_35840671	0.00267755	AGGUAGU	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr22_+_30279144_30279202	0.00232697	AGGUAGU	ENST00000401950.2|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000333027.3|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000445401.1|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000323630.5|MTMR3|ENSG00000100330.11|myotubularin related protein 3 	ENST00000351488.3|MTMR3|ENSG00000100330.11|myotubularin related protein 3
hg19_v2_chr6_-_7313381_7313458	0.00210221	AGGUAGU	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr2_+_5832799_5832799	0.00189439	AGGUAGU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr21_+_47878757_47879024	0.00122578	AGGUAGU	ENST00000400274.1|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000427143.2|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000318711.7|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000457905.3|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000466639.1|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000435722.3|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000417564.2|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila)
hg19_v2_chr12_+_123868320_123868320	0.000933566	AGGUAGU	ENST00000402868.3|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8 	ENST00000330479.4|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8
hg19_v2_chrX_-_132549506_132549526	0.000673861	AGGUAGU	ENST00000370828.3|GPC4|ENSG00000076716.7|glypican 4
hg19_v2_chr2_+_60983361_60983418	0.00053135	AGGUAGU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr7_+_114055052_114055378	0.000454489	AGGUAGU	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
