hg19_v2_chr5_-_41510656_41510713	0.0775854	AUGUGCC	ENST00000377801.3|PLCXD3|ENSG00000182836.5|phosphatidylinositol-specific phospholipase C, X domain containing 3
hg19_v2_chr5_+_82767284_82767310	0.0624182	AUGUGCC	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr2_-_202316260_202316308	0.0528822	AUGUGCC	ENST00000332624.3|TRAK2|ENSG00000115993.7|trafficking protein, kinesin binding 2
hg19_v2_chr6_+_89790490_89790506	0.0472379	AUGUGCC	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr9_+_95087766_95087950	0.044538	AUGUGCC	ENST00000375587.3|CENPP|ENSG00000188312.9|centromere protein P
hg19_v2_chr5_-_158526756_158526797	0.0439601	AUGUGCC	ENST00000313708.6|EBF1|ENSG00000164330.12|early B-cell factor 1 	ENST00000517373.1|EBF1|ENSG00000164330.12|early B-cell factor 1
hg19_v2_chr20_+_34894247_34894279	0.0419532	AUGUGCC	ENST00000373913.3|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chr14_-_90085458_90085557	0.0356456	AUGUGCC	ENST00000345097.4|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000555855.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000555353.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr10_+_20105157_20105184	0.0328965	AUGUGCC	ENST00000377242.3|PLXDC2|ENSG00000120594.12|plexin domain containing 2 	ENST00000377252.4|PLXDC2|ENSG00000120594.12|plexin domain containing 2
hg19_v2_chr19_-_31840438_31840470	0.0318323	AUGUGCC	ENST00000240587.4|TSHZ3|ENSG00000121297.6|teashirt zinc finger homeobox 3
hg19_v2_chr10_-_15210666_15210707	0.0302161	AUGUGCC	ENST00000378165.4|NMT2|ENSG00000152465.13|N-myristoyltransferase 2
hg19_v2_chr4_+_62066941_62066992	0.0295948	AUGUGCC	ENST00000512091.2|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr14_-_69619823_69619879	0.027653	AUGUGCC	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr17_-_1420182_1420279	0.0256725	AUGUGCC	ENST00000421807.2|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr17_-_76356148_76356165	0.0256718	AUGUGCC	ENST00000587578.1|SOCS3|ENSG00000184557.3|suppressor of cytokine signaling 3 	ENST00000330871.2|SOCS3|ENSG00000184557.3|suppressor of cytokine signaling 3
hg19_v2_chr5_-_76788317_76788421	0.0231654	AUGUGCC	ENST00000296679.4|WDR41|ENSG00000164253.8|WD repeat domain 41
hg19_v2_chr7_+_23338819_23338973	0.0220173	AUGUGCC	ENST00000466681.1|MALSU1|ENSG00000156928.4|mitochondrial assembly of ribosomal large subunit 1
hg19_v2_chr5_+_173315283_173315335	0.0208414	AUGUGCC	ENST00000265085.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chr5_+_118407053_118407239	0.0201361	AUGUGCC	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
hg19_v2_chr17_+_57642886_57643006	0.0188849	AUGUGCC	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr8_-_82024290_82024310	0.0181999	AUGUGCC	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr12_+_94542459_94542513	0.0177975	AUGUGCC	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr20_-_48770174_48770243	0.0177069	AUGUGCC	ENST00000341698.2|TMEM189-UBE2V1|ENSG00000124208.16|TMEM189-UBE2V1 readthrough
hg19_v2_chr1_+_197881592_197881635	0.0175351	AUGUGCC	ENST00000367391.1|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367390.3|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr20_-_48729670_48729694	0.0155997	AUGUGCC	ENST00000371657.5|UBE2V1|ENSG00000244687.7|ubiquitin-conjugating enzyme E2 variant 1
hg19_v2_chr12_+_104458235_104458344	0.0145585	AUGUGCC	ENST00000229330.4|HCFC2|ENSG00000111727.7|host cell factor C2
hg19_v2_chr2_-_50574856_50574892	0.0140018	AUGUGCC	ENST00000342183.5|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chrX_+_46433193_46433237	0.0128493	AUGUGCC	ENST00000276055.3|CHST7|ENSG00000147119.3|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7
hg19_v2_chr6_+_45389893_45389914	0.0123894	AUGUGCC	ENST00000371432.3|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr3_+_62304712_62304732	0.0122795	AUGUGCC	ENST00000494481.1|C3orf14|ENSG00000114405.6|chromosome 3 open reading frame 14
hg19_v2_chr17_-_42908155_42908204	0.012263	AUGUGCC	ENST00000426548.1|GJC1|ENSG00000182963.5|gap junction protein, gamma 1, 45kDa 	ENST00000590758.1|GJC1|ENSG00000182963.5|gap junction protein, gamma 1, 45kDa 	ENST00000591424.1|GJC1|ENSG00000182963.5|gap junction protein, gamma 1, 45kDa
hg19_v2_chr17_+_27717415_27717618	0.0117316	AUGUGCC	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr12_+_12870055_12870119	0.011173	AUGUGCC	ENST00000228872.4|CDKN1B|ENSG00000111276.6|cyclin-dependent kinase inhibitor 1B (p27, Kip1)
hg19_v2_chr6_-_146135880_146135952	0.0107327	AUGUGCC	ENST00000237281.4|FBXO30|ENSG00000118496.4|F-box protein 30
hg19_v2_chr2_-_38978492_38978636	0.0107279	AUGUGCC	ENST00000409276.1|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000446327.2|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000313117.6|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7
hg19_v2_chr18_+_13218769_13218792	0.0105761	AUGUGCC	ENST00000399848.3|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4 	ENST00000361205.4|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr1_+_193091080_193091222	0.0102471	AUGUGCC	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr8_+_61429416_61429502	0.00979044	AUGUGCC	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr12_-_57824739_57824834	0.00895464	AUGUGCC	ENST00000347140.3|R3HDM2|ENSG00000179912.15|R3H domain containing 2 	ENST00000402412.1|R3HDM2|ENSG00000179912.15|R3H domain containing 2
hg19_v2_chr10_+_112679301_112679346	0.00836721	AUGUGCC	ENST00000265277.5|SHOC2|ENSG00000108061.7|soc-2 suppressor of clear homolog (C. elegans) 	ENST00000369452.4|SHOC2|ENSG00000108061.7|soc-2 suppressor of clear homolog (C. elegans)
hg19_v2_chr3_-_176914238_176914277	0.0080521	AUGUGCC	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr1_-_173991434_173991556	0.00786548	AUGUGCC	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr2_-_157189180_157189290	0.00780647	AUGUGCC	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr17_-_5389477_5389537	0.00752736	AUGUGCC	ENST00000572834.1|DERL2|ENSG00000072849.6|derlin 2 	ENST00000570848.1|DERL2|ENSG00000072849.6|derlin 2 	ENST00000571971.1|DERL2|ENSG00000072849.6|derlin 2 	ENST00000158771.4|DERL2|ENSG00000072849.6|derlin 2
hg19_v2_chr10_-_94003003_94003013	0.00654735	AUGUGCC	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr5_+_102455853_102455961	0.00643955	AUGUGCC	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr1_+_36771946_36771994	0.0062985	AUGUGCC	ENST00000373139.2|SH3D21|ENSG00000214193.5|SH3 domain containing 21 	ENST00000453908.2|SH3D21|ENSG00000214193.5|SH3 domain containing 21 	ENST00000426732.2|SH3D21|ENSG00000214193.5|SH3 domain containing 21
hg19_v2_chr22_+_40573921_40573946	0.00610854	AUGUGCC	ENST00000454349.2|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B 	ENST00000335727.9|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B
hg19_v2_chr9_-_91793675_91793698	0.00591018	AUGUGCC	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr8_+_106330920_106330979	0.00486647	AUGUGCC	ENST00000407775.2|ZFPM2|ENSG00000169946.9|zinc finger protein, FOG family member 2
hg19_v2_chr2_-_164592497_164592573	0.00473682	AUGUGCC	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr6_+_87865262_87865339	0.00465001	AUGUGCC	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr17_+_48796905_48797008	0.0045046	AUGUGCC	ENST00000505658.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000393227.2|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000240304.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000311571.3|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000505619.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000544170.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000510984.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae)
hg19_v2_chr10_+_27793197_27793247	0.00394024	AUGUGCC	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr3_-_12705600_12705725	0.00379387	AUGUGCC	ENST00000542177.1|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000442415.2|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000251849.4|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1
hg19_v2_chr12_-_81331697_81331733	0.00368922	AUGUGCC	ENST00000552864.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr20_-_48770244_48770335	0.00368246	AUGUGCC	ENST00000371650.5|TMEM189|ENSG00000240849.6|transmembrane protein 189 	ENST00000371652.4|TMEM189|ENSG00000240849.6|transmembrane protein 189 	ENST00000557021.1|TMEM189|ENSG00000240849.6|transmembrane protein 189
hg19_v2_chr7_+_65338230_65338293	0.00360401	AUGUGCC	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr11_+_18720316_18720338	0.00299333	AUGUGCC	ENST00000280734.2|TMEM86A|ENSG00000151117.4|transmembrane protein 86A
hg19_v2_chr12_-_100536608_100536667	0.00173929	AUGUGCC	ENST00000356828.3|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like 	ENST00000279907.7|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like
hg19_v2_chr11_-_59436453_59436530	0.000874627	AUGUGCC	ENST00000300146.9|PATL1|ENSG00000166889.13|protein associated with topoisomerase II homolog 1 (yeast)
hg19_v2_chr2_-_213403565_213403584	0.000864416	AUGUGCC	ENST00000342788.4|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 	ENST00000436443.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr15_+_59279851_59279880	0.000641601	AUGUGCC	ENST00000348370.4|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000434298.1|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000559160.1|RNF111|ENSG00000157450.11|ring finger protein 111
hg19_v2_chr17_+_30264014_30264086	0.000622347	AUGUGCC	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr5_-_160973649_160973713	0.000523813	AUGUGCC	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chr18_+_63418068_63418157	0.000461333	AUGUGCC	ENST00000397968.2|CDH7|ENSG00000081138.9|cadherin 7, type 2
hg19_v2_chr7_-_155604967_155605105	0.000454694	AUGUGCC	ENST00000297261.2|SHH|ENSG00000164690.3|sonic hedgehog
hg19_v2_chr6_-_99873145_99873207	0.000454477	AUGUGCC	ENST00000369239.5|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein 	ENST00000438806.1|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein
hg19_v2_chr5_+_143584814_143584840	0.000430841	AUGUGCC	ENST00000507359.3|KCTD16|ENSG00000183775.6|potassium channel tetramerization domain containing 16
hg19_v2_chr1_-_70671216_70671303	7.34238e-05	AUGUGCC	ENST00000370952.3|LRRC40|ENSG00000066557.5|leucine rich repeat containing 40
