hg19_v2_chr3_-_69435224_69435280	0.285924	CAGUAGU	ENST00000398540.3|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr20_-_14318248_14318264	0.247307	CAGUAGU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr7_-_83824169_83824217	0.22876	CAGUAGU	ENST00000265362.4|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr14_+_67999999_68000036	0.210839	CAGUAGU	ENST00000329153.5|PLEKHH1|ENSG00000054690.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
hg19_v2_chr10_+_82213904_82213922	0.200952	CAGUAGU	ENST00000429989.3|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr13_-_86373536_86373623	0.194366	CAGUAGU	ENST00000400286.2|SLITRK6|ENSG00000184564.8|SLIT and NTRK-like family, member 6
hg19_v2_chr7_+_20370746_20370778	0.165468	CAGUAGU	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr1_+_109792641_109792641	0.157042	CAGUAGU	ENST00000271332.3|CELSR2|ENSG00000143126.7|cadherin, EGF LAG seven-pass G-type receptor 2
hg19_v2_chr10_-_105615164_105615323	0.153634	CAGUAGU	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr1_-_228135599_228135640	0.148787	CAGUAGU	ENST00000272164.5|WNT9A|ENSG00000143816.7|wingless-type MMTV integration site family, member 9A
hg19_v2_chr6_+_53659746_53659817	0.143982	CAGUAGU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr6_+_1312675_1312701	0.140475	CAGUAGU	ENST00000296839.2|FOXQ1|ENSG00000164379.4|forkhead box Q1
hg19_v2_chr2_+_148602058_148602185	0.13642	CAGUAGU	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr1_+_65613217_65613331	0.135083	CAGUAGU	ENST00000545314.1|AK4|ENSG00000162433.10|adenylate kinase 4
hg19_v2_chr11_+_35160709_35160853	0.13357	CAGUAGU	ENST00000415148.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000433354.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000449691.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000437706.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000360158.4|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000428726.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526669.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000433892.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000278386.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000434472.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000352818.4|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000442151.2|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr2_+_173292301_173292332	0.130471	CAGUAGU	ENST00000264106.6|ITGA6|ENSG00000091409.10|integrin, alpha 6 	ENST00000375221.2|ITGA6|ENSG00000091409.10|integrin, alpha 6 	ENST00000343713.4|ITGA6|ENSG00000091409.10|integrin, alpha 6
hg19_v2_chrX_-_8700171_8700227	0.125654	CAGUAGU	ENST00000262648.3|KAL1|ENSG00000011201.6|Kallmann syndrome 1 sequence
hg19_v2_chr8_-_66754172_66754201	0.122602	CAGUAGU	ENST00000401827.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr12_-_31479045_31479074	0.116548	CAGUAGU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr1_-_19283163_19283180	0.114171	CAGUAGU	ENST00000455833.2|IFFO2|ENSG00000169991.6|intermediate filament family orphan 2
hg19_v2_chrX_+_16804544_16804613	0.104194	CAGUAGU	ENST00000380122.5|TXLNG|ENSG00000086712.8|taxilin gamma 	ENST00000398155.4|TXLNG|ENSG00000086712.8|taxilin gamma
hg19_v2_chr22_+_25960786_25960854	0.0998451	CAGUAGU	ENST00000324198.6|ADRBK2|ENSG00000100077.10|adrenergic, beta, receptor kinase 2
hg19_v2_chr8_-_42397037_42397121	0.0934827	CAGUAGU	ENST00000342228.3|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr3_-_56835967_56835995	0.0934278	CAGUAGU	ENST00000495373.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3 	ENST00000296315.3|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr1_-_94079648_94079671	0.0908331	CAGUAGU	ENST00000370247.3|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr4_+_26862400_26862416	0.0903379	CAGUAGU	ENST00000467011.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000412829.2|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr17_+_30813576_30813637	0.090287	CAGUAGU	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr13_-_76056250_76056280	0.0894954	CAGUAGU	ENST00000377636.3|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000431480.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000377625.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000425511.1|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4
hg19_v2_chr10_+_5454505_5454540	0.0879389	CAGUAGU	ENST00000355029.4|NET1|ENSG00000173848.14|neuroepithelial cell transforming 1
hg19_v2_chr13_-_30169807_30169839	0.0849066	CAGUAGU	ENST00000380752.5|SLC7A1|ENSG00000139514.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
hg19_v2_chr12_-_46662772_46662835	0.082777	CAGUAGU	ENST00000549049.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000439706.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000398637.5|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr9_+_2621798_2621834	0.0823639	CAGUAGU	ENST00000382100.3|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr4_-_139163491_139163510	0.0802201	CAGUAGU	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr14_+_56046914_56046973	0.0801855	CAGUAGU	ENST00000413890.2|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor) 	ENST00000395309.3|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor) 	ENST00000554567.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor) 	ENST00000555498.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr5_-_16936340_16936418	0.0771823	CAGUAGU	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr20_-_4982132_4982164	0.075721	CAGUAGU	ENST00000338244.1|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2 	ENST00000424750.2|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2
hg19_v2_chr14_+_70346125_70346143	0.0754378	CAGUAGU	ENST00000361956.3|SMOC1|ENSG00000198732.6|SPARC related modular calcium binding 1 	ENST00000381280.4|SMOC1|ENSG00000198732.6|SPARC related modular calcium binding 1
hg19_v2_chr9_-_23821273_23821313	0.0747056	CAGUAGU	ENST00000380110.4|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr16_+_81348528_81348578	0.0740264	CAGUAGU	ENST00000568107.2|GAN|ENSG00000261609.3|gigaxonin
hg19_v2_chr1_-_29450399_29450447	0.0739549	CAGUAGU	ENST00000521452.1|TMEM200B|ENSG00000253304.1|transmembrane protein 200B
hg19_v2_chr2_+_196521458_196521491	0.0738529	CAGUAGU	ENST00000409086.3|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr4_-_73434498_73434516	0.0691921	CAGUAGU	ENST00000286657.4|ADAMTS3|ENSG00000156140.4|ADAM metallopeptidase with thrombospondin type 1 motif, 3
hg19_v2_chrX_-_130037198_130037234	0.0677946	CAGUAGU	ENST00000370935.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000338144.3|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000394363.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr2_+_198570081_198570142	0.0671306	CAGUAGU	ENST00000282276.6|MARS2|ENSG00000247626.3|methionyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr4_+_41937131_41937211	0.0663794	CAGUAGU	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr14_-_100070363_100070467	0.0658393	CAGUAGU	ENST00000380243.4|CCDC85C|ENSG00000205476.4|coiled-coil domain containing 85C
hg19_v2_chr8_-_130951940_130952118	0.0657383	CAGUAGU	ENST00000522250.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000522941.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000522746.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000520204.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519070.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000520254.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519824.2|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519540.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chrX_+_78003204_78003248	0.0652542	CAGUAGU	ENST00000435339.3|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4 	ENST00000514744.1|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4
hg19_v2_chr16_+_58549378_58549392	0.0648889	CAGUAGU	ENST00000310682.2|SETD6|ENSG00000103037.7|SET domain containing 6 	ENST00000394266.4|SETD6|ENSG00000103037.7|SET domain containing 6 	ENST00000219315.4|SETD6|ENSG00000103037.7|SET domain containing 6
hg19_v2_chr10_-_89577910_89578010	0.0637859	CAGUAGU	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr17_-_48546232_48546267	0.0624636	CAGUAGU	ENST00000258969.4|CHAD|ENSG00000136457.5|chondroadherin
hg19_v2_chr2_-_106810783_106810795	0.061064	CAGUAGU	ENST00000283148.7|UXS1|ENSG00000115652.10|UDP-glucuronate decarboxylase 1
hg19_v2_chr6_-_75915757_75915775	0.0600147	CAGUAGU	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr2_+_110371905_110371950	0.0592948	CAGUAGU	ENST00000356454.3|SOWAHC|ENSG00000198142.3|sosondowah ankyrin repeat domain family member C
hg19_v2_chr5_+_139175380_139175431	0.0566192	CAGUAGU	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr1_+_116184566_116184633	0.0565866	CAGUAGU	ENST00000355485.2|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1 	ENST00000369510.4|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1
hg19_v2_chr2_-_208030647_208030689	0.0564944	CAGUAGU	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr8_+_81397876_81397902	0.0557798	CAGUAGU	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr6_+_7107999_7108054	0.0554776	CAGUAGU	ENST00000491191.1|RREB1|ENSG00000124782.15|ras responsive element binding protein 1 	ENST00000379938.2|RREB1|ENSG00000124782.15|ras responsive element binding protein 1 	ENST00000471433.1|RREB1|ENSG00000124782.15|ras responsive element binding protein 1
hg19_v2_chr3_-_171178157_171178225	0.0536599	CAGUAGU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr2_+_27440229_27440280	0.053592	CAGUAGU	ENST00000264705.4|CAD|ENSG00000084774.9|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENST00000403525.1|CAD|ENSG00000084774.9|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
hg19_v2_chr4_-_40631859_40631889	0.0533696	CAGUAGU	ENST00000295971.7|RBM47|ENSG00000163694.10|RNA binding motif protein 47 	ENST00000319592.4|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr4_+_103790120_103790186	0.0520867	CAGUAGU	ENST00000273986.4|CISD2|ENSG00000145354.5|CDGSH iron sulfur domain 2
hg19_v2_chr20_+_35201857_35201891	0.0516903	CAGUAGU	ENST00000373874.2|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr16_-_75498553_75498635	0.0516565	CAGUAGU	ENST00000569276.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000357613.4|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000561878.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000567194.1|RP11-77K12.1|ENSG00000261717.1|Uncharacterized protein  	ENST00000566980.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A
hg19_v2_chrX_-_80065146_80065250	0.0490207	CAGUAGU	ENST00000373275.4|BRWD3|ENSG00000165288.10|bromodomain and WD repeat domain containing 3
hg19_v2_chr3_-_98620500_98620547	0.0485283	CAGUAGU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr2_+_36582857_36583069	0.048521	CAGUAGU	ENST00000280527.2|CRIM1|ENSG00000150938.5|cysteine rich transmembrane BMP regulator 1 (chordin-like)
hg19_v2_chr1_-_155942086_155942145	0.0481998	CAGUAGU	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr8_-_124286735_124286773	0.0481237	CAGUAGU	ENST00000395571.3|ZHX1|ENSG00000165156.10|zinc fingers and homeoboxes 1
hg19_v2_chr5_-_59995921_59996000	0.0474995	CAGUAGU	ENST00000453022.2|DEPDC1B|ENSG00000035499.8|DEP domain containing 1B 	ENST00000545085.1|DEPDC1B|ENSG00000035499.8|DEP domain containing 1B 	ENST00000265036.5|DEPDC1B|ENSG00000035499.8|DEP domain containing 1B
hg19_v2_chr3_+_122513642_122513664	0.0472238	CAGUAGU	ENST00000261038.5|DIRC2|ENSG00000138463.8|disrupted in renal carcinoma 2
hg19_v2_chr16_+_81478775_81478895	0.0466589	CAGUAGU	ENST00000537098.3|CMIP|ENSG00000153815.12|c-Maf inducing protein
hg19_v2_chrX_+_44732757_44732860	0.0461918	CAGUAGU	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr2_+_46524537_46524553	0.0447807	CAGUAGU	ENST00000263734.3|EPAS1|ENSG00000116016.9|endothelial PAS domain protein 1
hg19_v2_chr3_+_61547585_61547585	0.0435534	CAGUAGU	ENST00000295874.10|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G 	ENST00000474889.1|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G
hg19_v2_chr1_-_184723942_184724047	0.0434962	CAGUAGU	ENST00000318130.8|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr22_+_21771656_21771693	0.0421575	CAGUAGU	ENST00000407464.2|HIC2|ENSG00000169635.5|hypermethylated in cancer 2
hg19_v2_chr15_+_90544532_90544624	0.0406177	CAGUAGU	ENST00000268154.4|ZNF710|ENSG00000140548.5|zinc finger protein 710
hg19_v2_chr15_+_43425672_43425733	0.0405295	CAGUAGU	ENST00000260403.2|TMEM62|ENSG00000137842.2|transmembrane protein 62
hg19_v2_chr2_+_85198216_85198305	0.0400048	CAGUAGU	ENST00000456682.1|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1 	ENST00000409785.4|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1
hg19_v2_chrX_+_119495934_119495997	0.0398881	CAGUAGU	ENST00000218008.3|ATP1B4|ENSG00000101892.7|ATPase, Na+/K+ transporting, beta 4 polypeptide 	ENST00000361319.3|ATP1B4|ENSG00000101892.7|ATPase, Na+/K+ transporting, beta 4 polypeptide 	ENST00000539306.1|ATP1B4|ENSG00000101892.7|ATPase, Na+/K+ transporting, beta 4 polypeptide
hg19_v2_chr2_+_159825143_159825190	0.0397067	CAGUAGU	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr11_-_110583451_110583451	0.0381402	CAGUAGU	ENST00000260283.4|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20 	ENST00000528829.1|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr6_+_161412759_161412846	0.038006	CAGUAGU	ENST00000366919.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000392142.4|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000366920.2|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4 	ENST00000348824.7|MAP3K4|ENSG00000085511.15|mitogen-activated protein kinase kinase kinase 4
hg19_v2_chr1_-_179198702_179198741	0.0379822	CAGUAGU	ENST00000502732.1|ABL2|ENSG00000143322.15|c-abl oncogene 2, non-receptor tyrosine kinase
hg19_v2_chr10_+_102106829_102106881	0.0371919	CAGUAGU	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr7_+_116139424_116139444	0.0368603	CAGUAGU	ENST00000222693.4|CAV2|ENSG00000105971.10|caveolin 2
hg19_v2_chr5_+_129240151_129240182	0.035989	CAGUAGU	ENST00000305031.4|CHSY3|ENSG00000198108.3|chondroitin sulfate synthase 3
hg19_v2_chr21_-_36260980_36261011	0.0354574	CAGUAGU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chrX_+_40944871_40944888	0.0350899	CAGUAGU	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr10_+_72238517_72238595	0.0349699	CAGUAGU	ENST00000263563.6|PALD1|ENSG00000107719.8|phosphatase domain containing, paladin 1
hg19_v2_chr14_+_103058948_103059005	0.0342257	CAGUAGU	ENST00000262241.6|RCOR1|ENSG00000089902.8|REST corepressor 1
hg19_v2_chr17_+_73521763_73521870	0.0324944	CAGUAGU	ENST00000167462.5|LLGL2|ENSG00000073350.9|lethal giant larvae homolog 2 (Drosophila) 	ENST00000375227.4|LLGL2|ENSG00000073350.9|lethal giant larvae homolog 2 (Drosophila) 	ENST00000392550.3|LLGL2|ENSG00000073350.9|lethal giant larvae homolog 2 (Drosophila) 	ENST00000578363.1|LLGL2|ENSG00000073350.9|lethal giant larvae homolog 2 (Drosophila) 	ENST00000579392.1|LLGL2|ENSG00000073350.9|lethal giant larvae homolog 2 (Drosophila)
hg19_v2_chr1_+_165796753_165796776	0.0312993	CAGUAGU	ENST00000367879.4|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr19_+_41222998_41223057	0.0309229	CAGUAGU	ENST00000263370.2|ITPKC|ENSG00000086544.2|inositol-trisphosphate 3-kinase C
hg19_v2_chr4_-_79860506_79860600	0.0301643	CAGUAGU	ENST00000295462.3|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000380645.4|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000512733.1|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III
hg19_v2_chr2_-_73053126_73053184	0.0296898	CAGUAGU	ENST00000272427.6|EXOC6B|ENSG00000144036.10|exocyst complex component 6B 	ENST00000410104.1|EXOC6B|ENSG00000144036.10|exocyst complex component 6B
hg19_v2_chr9_-_95432536_95432560	0.0294771	CAGUAGU	ENST00000287996.3|IPPK|ENSG00000127080.5|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
hg19_v2_chr10_+_60936347_60936358	0.0288319	CAGUAGU	ENST00000373880.4|PHYHIPL|ENSG00000165443.7|phytanoyl-CoA 2-hydroxylase interacting protein-like
hg19_v2_chr10_-_15762124_15762149	0.0287781	CAGUAGU	ENST00000378076.3|ITGA8|ENSG00000077943.7|integrin, alpha 8
hg19_v2_chr10_-_88281494_88281572	0.0283386	CAGUAGU	ENST00000298767.5|WAPAL|ENSG00000062650.13|wings apart-like homolog (Drosophila)
hg19_v2_chr7_+_129074266_129074306	0.0282946	CAGUAGU	ENST00000249344.2|STRIP2|ENSG00000128578.5|striatin interacting protein 2 	ENST00000435494.2|STRIP2|ENSG00000128578.5|striatin interacting protein 2
hg19_v2_chr12_-_57030115_57030177	0.0279207	CAGUAGU	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr15_+_41221536_41221591	0.0277788	CAGUAGU	ENST00000249749.5|DLL4|ENSG00000128917.5|delta-like 4 (Drosophila)
hg19_v2_chr5_-_693500_693511	0.0276928	CAGUAGU	ENST00000360578.5|TPPP|ENSG00000171368.10|tubulin polymerization promoting protein
hg19_v2_chr15_-_34502278_34502318	0.0273289	CAGUAGU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr11_+_129939779_129939801	0.0271109	CAGUAGU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr9_+_77112244_77112281	0.0265858	CAGUAGU	ENST00000376896.3|RORB|ENSG00000198963.6|RAR-related orphan receptor B
hg19_v2_chr19_+_39616410_39616474	0.0259479	CAGUAGU	ENST00000602004.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000599470.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000321944.4|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000593480.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000358301.3|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000593690.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4 	ENST00000599386.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4
hg19_v2_chrX_-_77150985_77151090	0.0256033	CAGUAGU	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr12_-_16761007_16761080	0.0255971	CAGUAGU	ENST00000354662.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2) 	ENST00000441439.2|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr6_+_13615554_13615601	0.0254456	CAGUAGU	ENST00000451315.2|NOL7|ENSG00000225921.2|nucleolar protein 7, 27kDa
hg19_v2_chr9_-_107690420_107690518	0.0253843	CAGUAGU	ENST00000423487.2|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374733.1|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374736.3|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1
hg19_v2_chr14_-_93582148_93582181	0.0251671	CAGUAGU	ENST00000267615.6|ITPK1|ENSG00000100605.12|inositol-tetrakisphosphate 1-kinase 	ENST00000553452.1|ITPK1|ENSG00000100605.12|inositol-tetrakisphosphate 1-kinase
hg19_v2_chr1_-_211752073_211752084	0.0247504	CAGUAGU	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr15_-_49447835_49447858	0.0236295	CAGUAGU	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr12_-_102874416_102874425	0.0236099	CAGUAGU	ENST00000392904.1|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C) 	ENST00000337514.6|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C)
hg19_v2_chr5_-_100238956_100238994	0.0234304	CAGUAGU	ENST00000231461.5|ST8SIA4|ENSG00000113532.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
hg19_v2_chr6_+_47445467_47445536	0.0233164	CAGUAGU	ENST00000359314.5|CD2AP|ENSG00000198087.7|CD2-associated protein
hg19_v2_chr11_+_92085262_92085262	0.0227802	CAGUAGU	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr8_+_26149007_26149061	0.0225225	CAGUAGU	ENST00000380737.3|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000524169.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr12_-_48099773_48099844	0.0224421	CAGUAGU	ENST00000432584.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3 	ENST00000005386.3|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr5_+_149109825_149109907	0.0223306	CAGUAGU	ENST00000360453.4|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000394320.3|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000309241.5|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta
hg19_v2_chr7_-_75988321_75988348	0.022036	CAGUAGU	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr10_+_11206925_11206993	0.0220198	CAGUAGU	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr11_+_832944_832994	0.0213179	CAGUAGU	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr14_+_75745477_75745680	0.020892	CAGUAGU	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr2_-_172967621_172967637	0.0204932	CAGUAGU	ENST00000234198.4|DLX2|ENSG00000115844.6|distal-less homeobox 2 	ENST00000466293.2|DLX2|ENSG00000115844.6|distal-less homeobox 2
hg19_v2_chr7_-_105752651_105752777	0.0204843	CAGUAGU	ENST00000470347.1|SYPL1|ENSG00000008282.3|synaptophysin-like 1 	ENST00000455385.2|SYPL1|ENSG00000008282.3|synaptophysin-like 1
hg19_v2_chr19_+_1205740_1205792	0.020398	CAGUAGU	ENST00000326873.7|STK11|ENSG00000118046.10|serine/threonine kinase 11
hg19_v2_chr2_+_191273052_191273121	0.0202919	CAGUAGU	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr8_+_125551338_125551425	0.0197097	CAGUAGU	ENST00000276689.3|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000518008.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000522532.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000517367.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa
hg19_v2_chr8_+_29952914_29953016	0.0196364	CAGUAGU	ENST00000321250.8|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000518001.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000520682.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000442880.2|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000523116.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr8_+_123793633_123793703	0.0194858	CAGUAGU	ENST00000314393.4|ZHX2|ENSG00000178764.6|zinc fingers and homeoboxes 2
hg19_v2_chr19_+_13229126_13229151	0.019093	CAGUAGU	ENST00000292431.4|NACC1|ENSG00000160877.5|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
hg19_v2_chr8_-_101965146_101965236	0.0185737	CAGUAGU	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr1_+_15943995_15944014	0.0178539	CAGUAGU	ENST00000480945.1|DDI2|ENSG00000197312.7|DNA-damage inducible 1 homolog 2 (S. cerevisiae)
hg19_v2_chr1_-_93645818_93645918	0.0177771	CAGUAGU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr10_+_98592009_98592061	0.017769	CAGUAGU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr4_-_39979576_39979588	0.0176846	CAGUAGU	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr1_-_19578003_19578046	0.0167446	CAGUAGU	ENST00000375199.3|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1 	ENST00000375208.3|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1 	ENST00000356068.2|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1 	ENST00000477853.1|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1
hg19_v2_chr9_+_33265011_33265059	0.0164337	CAGUAGU	ENST00000419016.2|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr1_-_78444776_78444800	0.0162365	CAGUAGU	ENST00000370767.1|FUBP1|ENSG00000162613.12|far upstream element (FUSE) binding protein 1 	ENST00000421641.1|FUBP1|ENSG00000162613.12|far upstream element (FUSE) binding protein 1
hg19_v2_chr3_+_38495333_38495422	0.016214	CAGUAGU	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr3_+_38206975_38207101	0.0158053	CAGUAGU	ENST00000446845.1|OXSR1|ENSG00000172939.4|oxidative stress responsive 1 	ENST00000311806.3|OXSR1|ENSG00000172939.4|oxidative stress responsive 1
hg19_v2_chrX_-_30885319_30885319	0.0151271	CAGUAGU	ENST00000378933.1|TAB3|ENSG00000157625.11|TGF-beta activated kinase 1/MAP3K7 binding protein 3
hg19_v2_chr17_+_36508111_36508128	0.0149239	CAGUAGU	ENST00000331159.5|SOCS7|ENSG00000174111.8|suppressor of cytokine signaling 7 	ENST00000577233.1|SOCS7|ENSG00000174111.8|suppressor of cytokine signaling 7
hg19_v2_chr7_-_95064264_95064510	0.0147696	CAGUAGU	ENST00000536183.1|PON2|ENSG00000105854.8|paraoxonase 2 	ENST00000433091.2|PON2|ENSG00000105854.8|paraoxonase 2 	ENST00000222572.3|PON2|ENSG00000105854.8|paraoxonase 2
hg19_v2_chr11_+_111473108_111473226	0.0144719	CAGUAGU	ENST00000304987.3|SIK2|ENSG00000170145.4|salt-inducible kinase 2
hg19_v2_chr3_+_37284668_37284771	0.0141072	CAGUAGU	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr4_-_74124502_74124523	0.0139086	CAGUAGU	ENST00000358602.4|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000330838.6|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000561029.1|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr15_-_77363513_77363570	0.0137137	CAGUAGU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr15_-_56209306_56209344	0.0134629	CAGUAGU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr15_-_56535464_56535521	0.0128298	CAGUAGU	ENST00000559447.2|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000422057.1|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000317318.6|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000423270.1|RFX7|ENSG00000181827.10|regulatory factor X, 7
hg19_v2_chr12_-_56652111_56652183	0.0127778	CAGUAGU	ENST00000267116.7|ANKRD52|ENSG00000139645.9|ankyrin repeat domain 52
hg19_v2_chr4_-_76957214_76957350	0.0126871	CAGUAGU	ENST00000306621.3|CXCL11|ENSG00000169248.8|chemokine (C-X-C motif) ligand 11
hg19_v2_chr1_-_177133818_177133872	0.0124224	CAGUAGU	ENST00000424564.2|ASTN1|ENSG00000152092.11|astrotactin 1 	ENST00000361833.2|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr10_+_60144782_60144887	0.0123652	CAGUAGU	ENST00000487519.1|TFAM|ENSG00000108064.6|transcription factor A, mitochondrial
hg19_v2_chr3_-_167813672_167813763	0.0118944	CAGUAGU	ENST00000470487.1|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr1_+_29563011_29563151	0.0117899	CAGUAGU	ENST00000345512.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000373779.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000356870.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000323874.8|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000428026.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000460170.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U
hg19_v2_chr21_+_46494466_46494543	0.0116905	CAGUAGU	ENST00000539173.1|ADARB1|ENSG00000197381.11|adenosine deaminase, RNA-specific, B1 	ENST00000389863.4|ADARB1|ENSG00000197381.11|adenosine deaminase, RNA-specific, B1 	ENST00000348831.4|ADARB1|ENSG00000197381.11|adenosine deaminase, RNA-specific, B1 	ENST00000437626.1|ADARB1|ENSG00000197381.11|adenosine deaminase, RNA-specific, B1
hg19_v2_chr12_-_80084862_80084884	0.0102318	CAGUAGU	ENST00000328827.4|PAWR|ENSG00000177425.6|PRKC, apoptosis, WT1, regulator
hg19_v2_chr6_+_84569359_84569445	0.0101527	CAGUAGU	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr12_+_14518598_14518663	0.0100324	CAGUAGU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr10_+_74033672_74033688	0.00984786	CAGUAGU	ENST00000307365.3|DDIT4|ENSG00000168209.4|DNA-damage-inducible transcript 4
hg19_v2_chr2_-_224903995_224904036	0.00966605	CAGUAGU	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chrX_+_15767971_15768093	0.00955392	CAGUAGU	ENST00000479740.1|CA5B|ENSG00000169239.8|carbonic anhydrase VB, mitochondrial 	ENST00000454127.2|CA5B|ENSG00000169239.8|carbonic anhydrase VB, mitochondrial
hg19_v2_chr14_-_27066636_27066701	0.00937632	CAGUAGU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr10_+_112257596_112257634	0.00917574	CAGUAGU	ENST00000369583.3|DUSP5|ENSG00000138166.5|dual specificity phosphatase 5
hg19_v2_chr15_+_85523671_85523747	0.00897534	CAGUAGU	ENST00000310298.4|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000557957.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chr20_-_52210368_52210384	0.00828706	CAGUAGU	ENST00000371471.2|ZNF217|ENSG00000171940.9|zinc finger protein 217
hg19_v2_chr6_+_35182176_35182196	0.00827152	CAGUAGU	ENST00000394681.1|SCUBE3|ENSG00000146197.7|signal peptide, CUB domain, EGF-like 3 	ENST00000274938.7|SCUBE3|ENSG00000146197.7|signal peptide, CUB domain, EGF-like 3
hg19_v2_chr3_-_52931557_52931623	0.00782017	CAGUAGU	ENST00000504329.1|TMEM110-MUSTN1|ENSG00000248592.3|TMEM110-MUSTN1 readthrough 	ENST00000355083.5|TMEM110|ENSG00000213533.7|transmembrane protein 110
hg19_v2_chr10_+_115803650_115803806	0.00754035	CAGUAGU	ENST00000369295.2|ADRB1|ENSG00000043591.4|adrenoceptor beta 1
hg19_v2_chr1_-_46152174_46152302	0.00744751	CAGUAGU	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr15_+_84322827_84322861	0.00735876	CAGUAGU	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chr19_+_1407517_1407612	0.00707935	CAGUAGU	ENST00000336761.6|DAZAP1|ENSG00000071626.12|DAZ associated protein 1 	ENST00000233078.4|DAZAP1|ENSG00000071626.12|DAZ associated protein 1
hg19_v2_chr3_+_32859510_32859546	0.00634631	CAGUAGU	ENST00000383763.5|TRIM71|ENSG00000206557.5|tripartite motif containing 71, E3 ubiquitin protein ligase
hg19_v2_chr1_-_52344471_52344481	0.00625789	CAGUAGU	ENST00000352171.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase) 	ENST00000354831.7|NRD1|ENSG00000078618.15|nardilysin (N-arginine dibasic convertase)
hg19_v2_chr1_+_167190066_167190156	0.00534096	CAGUAGU	ENST00000367866.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000429375.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000452019.1|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000420254.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000541643.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr4_+_148538517_148538592	0.00526984	CAGUAGU	ENST00000296582.3|TMEM184C|ENSG00000164168.3|transmembrane protein 184C 	ENST00000508208.1|TMEM184C|ENSG00000164168.3|transmembrane protein 184C
hg19_v2_chr2_+_42396472_42396563	0.00467051	CAGUAGU	ENST00000318522.5|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4 	ENST00000402711.2|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4
hg19_v2_chr12_+_22778009_22778112	0.00437886	CAGUAGU	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr2_-_24149977_24150007	0.00431531	CAGUAGU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr7_+_107384142_107384173	0.00409956	CAGUAGU	ENST00000440859.3|CBLL1|ENSG00000105879.7|Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
hg19_v2_chr9_+_129567282_129567353	0.00409927	CAGUAGU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr1_+_161736072_161736093	0.00369077	CAGUAGU	ENST00000367942.3|ATF6|ENSG00000118217.5|activating transcription factor 6
hg19_v2_chr7_-_27205136_27205164	0.0036869	CAGUAGU	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chr17_-_27621125_27621143	0.00359305	CAGUAGU	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr20_+_33814457_33814506	0.00308286	CAGUAGU	ENST00000246186.6|MMP24|ENSG00000125966.8|matrix metallopeptidase 24 (membrane-inserted)
hg19_v2_chr1_+_66797687_66797884	0.00249791	CAGUAGU	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr2_+_138721850_138721890	0.00246813	CAGUAGU	ENST00000329366.4|HNMT|ENSG00000150540.9|histamine N-methyltransferase 	ENST00000280097.3|HNMT|ENSG00000150540.9|histamine N-methyltransferase
hg19_v2_chr15_+_49715293_49715448	0.00220354	CAGUAGU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr4_-_129208940_129208976	0.00201275	CAGUAGU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr1_+_2985760_2985775	0.00189733	CAGUAGU	ENST00000378391.2|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000514189.1|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000270722.5|PRDM16|ENSG00000142611.12|PR domain containing 16
hg19_v2_chr11_+_118307179_118307228	0.00178402	CAGUAGU	ENST00000534358.1|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000531904.2|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000389506.5|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000354520.4|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A
hg19_v2_chr15_+_83478370_83478426	0.00146677	CAGUAGU	ENST00000286760.4|WHAMM|ENSG00000156232.6|WAS protein homolog associated with actin, golgi membranes and microtubules
hg19_v2_chr13_+_58206655_58206655	0.00133909	CAGUAGU	ENST00000377918.3|PCDH17|ENSG00000118946.7|protocadherin 17
hg19_v2_chr1_-_36022979_36023014	0.00120895	CAGUAGU	ENST00000469892.1|KIAA0319L|ENSG00000142687.13|KIAA0319-like 	ENST00000325722.3|KIAA0319L|ENSG00000142687.13|KIAA0319-like
hg19_v2_chr5_+_52083730_52083821	0.00116022	CAGUAGU	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr3_+_150804676_150804697	0.000945693	CAGUAGU	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr16_-_1464688_1464752	0.000815808	CAGUAGU	ENST00000389221.4|UNKL|ENSG00000059145.14|unkempt family zinc finger-like 	ENST00000508903.2|UNKL|ENSG00000059145.14|unkempt family zinc finger-like 	ENST00000397462.1|UNKL|ENSG00000059145.14|unkempt family zinc finger-like 	ENST00000301712.5|UNKL|ENSG00000059145.14|unkempt family zinc finger-like
hg19_v2_chr10_-_126432619_126432663	0.000758621	CAGUAGU	ENST00000337318.3|FAM53B|ENSG00000189319.9|family with sequence similarity 53, member B
hg19_v2_chr6_+_26365443_26365503	0.000656635	CAGUAGU	ENST00000527422.1|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000356386.2|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000396934.3|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000377708.2|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000396948.1|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2 	ENST00000508906.2|BTN3A2|ENSG00000186470.9|butyrophilin, subfamily 3, member A2
hg19_v2_chr9_-_27573392_27573451	0.000505104	CAGUAGU	ENST00000380003.3|C9orf72|ENSG00000147894.10|chromosome 9 open reading frame 72
hg19_v2_chr12_+_19592602_19592648	0.000376385	CAGUAGU	ENST00000398864.3|AEBP2|ENSG00000139154.10|AE binding protein 2 	ENST00000266508.9|AEBP2|ENSG00000139154.10|AE binding protein 2
hg19_v2_chr17_+_30264014_30264086	0.000190577	CAGUAGU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
