hg19_v2_chr1_+_109792641_109792641	0.0368447	CCAGCAU	ENST00000271332.3|CELSR2|ENSG00000143126.7|cadherin, EGF LAG seven-pass G-type receptor 2
hg19_v2_chr4_+_48018781_48018816	0.0290835	CCAGCAU	ENST00000295461.5|NIPAL1|ENSG00000163293.7|NIPA-like domain containing 1
hg19_v2_chr16_+_68771128_68771255	0.0274353	CCAGCAU	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr18_+_19749386_19749404	0.0228677	CCAGCAU	ENST00000269216.3|GATA6|ENSG00000141448.4|GATA binding protein 6
hg19_v2_chr10_-_105615164_105615323	0.022065	CCAGCAU	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr18_-_53255766_53255860	0.0194784	CCAGCAU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr20_-_41818373_41818527	0.0177845	CCAGCAU	ENST00000373187.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000356100.2|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373184.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373190.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T
hg19_v2_chr11_-_115375107_115375283	0.0173217	CCAGCAU	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr20_-_39317868_39317884	0.0156904	CCAGCAU	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr3_-_9291063_9291136	0.0156851	CCAGCAU	ENST00000383836.3|SRGAP3|ENSG00000196220.11|SLIT-ROBO Rho GTPase activating protein 3
hg19_v2_chr15_+_45422131_45422172	0.0152629	CCAGCAU	ENST00000321429.4|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr6_+_21593972_21594071	0.0144644	CCAGCAU	ENST00000244745.1|SOX4|ENSG00000124766.4|SRY (sex determining region Y)-box 4 	ENST00000543472.1|SOX4|ENSG00000124766.4|SRY (sex determining region Y)-box 4
hg19_v2_chr7_-_156803329_156803362	0.0144152	CCAGCAU	ENST00000252971.6|MNX1|ENSG00000130675.10|motor neuron and pancreas homeobox 1
hg19_v2_chr1_-_154531095_154531119	0.0141728	CCAGCAU	ENST00000292211.4|UBE2Q1|ENSG00000160714.5|ubiquitin-conjugating enzyme E2Q family member 1
hg19_v2_chr15_+_73976545_73976624	0.0140502	CCAGCAU	ENST00000318443.5|CD276|ENSG00000103855.13|CD276 molecule 	ENST00000537340.2|CD276|ENSG00000103855.13|CD276 molecule 	ENST00000318424.5|CD276|ENSG00000103855.13|CD276 molecule
hg19_v2_chr10_+_28966271_28966437	0.0139926	CCAGCAU	ENST00000375533.3|BAMBI|ENSG00000095739.7|BMP and activin membrane-bound inhibitor
hg19_v2_chr10_-_73533255_73533303	0.0137642	CCAGCAU	ENST00000394957.3|C10orf54|ENSG00000107738.15|chromosome 10 open reading frame 54
hg19_v2_chr7_-_20256965_20257034	0.0126613	CCAGCAU	ENST00000400331.5|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1 	ENST00000332878.4|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1
hg19_v2_chr15_+_85359911_85359911	0.0126108	CCAGCAU	ENST00000258888.5|ALPK3|ENSG00000136383.6|alpha-kinase 3
hg19_v2_chr9_-_86571628_86571639	0.0120495	CCAGCAU	ENST00000376344.3|C9orf64|ENSG00000165118.10|chromosome 9 open reading frame 64
hg19_v2_chr8_-_119124045_119124097	0.0119851	CCAGCAU	ENST00000378204.2|EXT1|ENSG00000182197.6|exostosin glycosyltransferase 1
hg19_v2_chr1_+_109656579_109656623	0.0117917	CCAGCAU	ENST00000526264.1|KIAA1324|ENSG00000116299.12|KIAA1324 	ENST00000369939.3|KIAA1324|ENSG00000116299.12|KIAA1324
hg19_v2_chr14_+_65171099_65171210	0.0116722	CCAGCAU	ENST00000247226.7|PLEKHG3|ENSG00000126822.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
hg19_v2_chr9_+_124413873_124413969	0.0111601	CCAGCAU	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr2_-_119605253_119605264	0.0110378	CCAGCAU	ENST00000295206.6|EN1|ENSG00000163064.6|engrailed homeobox 1
hg19_v2_chr3_+_118892362_118892373	0.0106837	CCAGCAU	ENST00000497685.1|UPK1B|ENSG00000114638.3|uroplakin 1B 	ENST00000264234.3|UPK1B|ENSG00000114638.3|uroplakin 1B
hg19_v2_chr15_+_92396920_92396987	0.010629	CCAGCAU	ENST00000318445.6|SLCO3A1|ENSG00000176463.9|solute carrier organic anion transporter family, member 3A1
hg19_v2_chr1_-_203320617_203320617	0.0102065	CCAGCAU	ENST00000354955.4|FMOD|ENSG00000122176.10|fibromodulin
hg19_v2_chr2_-_96811170_96811186	0.0101081	CCAGCAU	ENST00000288943.4|DUSP2|ENSG00000158050.4|dual specificity phosphatase 2
hg19_v2_chr1_-_108507631_108507809	0.0100302	CCAGCAU	ENST00000527011.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000370056.4|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chr6_+_16238786_16238854	0.00991556	CCAGCAU	ENST00000259727.4|GMPR|ENSG00000137198.5|guanosine monophosphate reductase
hg19_v2_chr10_-_91403625_91403649	0.00924128	CCAGCAU	ENST00000322191.6|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000342512.3|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000371774.2|PANK1|ENSG00000152782.12|pantothenate kinase 1
hg19_v2_chr1_-_38273840_38273888	0.00920024	CCAGCAU	ENST00000373044.2|YRDC|ENSG00000196449.3|yrdC N(6)-threonylcarbamoyltransferase domain containing
hg19_v2_chr2_+_64681219_64681231	0.00847703	CCAGCAU	ENST00000238875.5|LGALSL|ENSG00000119862.8|lectin, galactoside-binding-like
hg19_v2_chr7_-_14942944_14942997	0.00787236	CCAGCAU	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr7_+_77166592_77166653	0.00782219	CCAGCAU	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr10_-_102279586_102279711	0.0074518	CCAGCAU	ENST00000370345.3|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000451524.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000370329.5|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae)
hg19_v2_chr12_+_113229737_113229821	0.00710806	CCAGCAU	ENST00000551052.1|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse) 	ENST00000415485.3|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse)
hg19_v2_chr16_-_79634595_79634620	0.00695519	CCAGCAU	ENST00000326043.4|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 	ENST00000393350.1|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
hg19_v2_chr8_+_6565854_6565942	0.00686414	CCAGCAU	ENST00000285518.6|AGPAT5|ENSG00000155189.7|1-acylglycerol-3-phosphate O-acyltransferase 5
hg19_v2_chr5_+_63802109_63802139	0.0068641	CCAGCAU	ENST00000334025.2|RGS7BP|ENSG00000186479.4|regulator of G-protein signaling 7 binding protein
hg19_v2_chr6_+_72596604_72596727	0.00666219	CCAGCAU	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr6_+_125283566_125283691	0.00664443	CCAGCAU	ENST00000521654.2|RNF217|ENSG00000146373.12|ring finger protein 217
hg19_v2_chrX_+_49126294_49126337	0.00660104	CCAGCAU	ENST00000466508.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000438316.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000055335.6|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000495799.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F
hg19_v2_chr5_+_86564739_86564791	0.00643735	CCAGCAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr19_-_38210622_38210691	0.00630072	CCAGCAU	ENST00000591664.1|ZNF607|ENSG00000198182.8|zinc finger protein 607 	ENST00000355202.4|ZNF607|ENSG00000198182.8|zinc finger protein 607
hg19_v2_chr1_-_78148324_78148365	0.00622471	CCAGCAU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr12_+_65563329_65563373	0.00622237	CCAGCAU	ENST00000308330.2|LEMD3|ENSG00000174106.2|LEM domain containing 3
hg19_v2_chr1_+_27153173_27153230	0.006207	CCAGCAU	ENST00000374142.4|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr3_-_179754706_179754732	0.00589208	CCAGCAU	ENST00000465751.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like 	ENST00000467460.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like
hg19_v2_chr3_-_123304017_123304040	0.00587187	CCAGCAU	ENST00000383657.5|PTPLB|ENSG00000206527.5|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
hg19_v2_chr22_+_25960786_25960854	0.00586651	CCAGCAU	ENST00000324198.6|ADRBK2|ENSG00000100077.10|adrenergic, beta, receptor kinase 2
hg19_v2_chr6_-_2634820_2634844	0.00580346	CCAGCAU	ENST00000296847.3|C6orf195|ENSG00000164385.5|chromosome 6 open reading frame 195
hg19_v2_chr8_-_124553437_124553453	0.00561996	CCAGCAU	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr10_-_118502070_118502085	0.00554007	CCAGCAU	ENST00000369209.3|HSPA12A|ENSG00000165868.8|heat shock 70kDa protein 12A
hg19_v2_chr19_+_40854559_40854625	0.0055196	CCAGCAU	ENST00000598962.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000409419.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000409587.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000602131.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000409735.4|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000600948.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000356508.5|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000596682.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3 	ENST00000594908.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3
hg19_v2_chr8_+_21915368_21915399	0.00518507	CCAGCAU	ENST00000265800.5|DMTN|ENSG00000158856.13|dematin actin binding protein 	ENST00000517418.1|DMTN|ENSG00000158856.13|dematin actin binding protein
hg19_v2_chr17_-_10741762_10741762	0.00517308	CCAGCAU	ENST00000580256.2|PIRT|ENSG00000233670.6|phosphoinositide-interacting regulator of transient receptor potential channels
hg19_v2_chr2_+_159825143_159825190	0.00486648	CCAGCAU	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr3_+_49591881_49591940	0.00469976	CCAGCAU	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr6_-_31869769_31869880	0.00465283	CCAGCAU	ENST00000375527.2|ZBTB12|ENSG00000204366.3|zinc finger and BTB domain containing 12
hg19_v2_chr12_-_54982420_54982461	0.00453283	CCAGCAU	ENST00000257905.8|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chrX_+_17393543_17393543	0.00438385	CCAGCAU	ENST00000380060.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chrX_+_123095155_123095179	0.00417951	CCAGCAU	ENST00000371160.1|STAG2|ENSG00000101972.14|stromal antigen 2 	ENST00000435103.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr3_-_114790179_114790222	0.0041637	CCAGCAU	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr11_-_129062093_129062184	0.00414285	CCAGCAU	ENST00000310343.9|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chrX_-_119445263_119445298	0.0039762	CCAGCAU	ENST00000309720.5|TMEM255A|ENSG00000125355.11|transmembrane protein 255A
hg19_v2_chr2_+_28974668_28974729	0.00386902	CCAGCAU	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr12_-_113574028_113574051	0.00357881	CCAGCAU	ENST00000546530.1|RASAL1|ENSG00000111344.7|RAS protein activator like 1 (GAP1 like) 	ENST00000261729.5|RASAL1|ENSG00000111344.7|RAS protein activator like 1 (GAP1 like)
hg19_v2_chr4_-_153457197_153457268	0.00357316	CCAGCAU	ENST00000281708.4|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr17_+_61086917_61086921	0.00355269	CCAGCAU	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr10_-_126849068_126849138	0.00351344	CCAGCAU	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr19_+_45754505_45754577	0.00349864	CCAGCAU	ENST00000262891.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4 	ENST00000300843.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4
hg19_v2_chr2_-_2334888_2335053	0.00342111	CCAGCAU	ENST00000428368.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like 	ENST00000399161.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like
hg19_v2_chr21_-_43299404_43299591	0.00337718	CCAGCAU	ENST00000422911.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000398548.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000538201.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000269844.3|PRDM15|ENSG00000141956.9|PR domain containing 15
hg19_v2_chr3_+_100428268_100428287	0.00328646	CCAGCAU	ENST00000240851.4|TFG|ENSG00000114354.8|TRK-fused gene
hg19_v2_chr5_+_175223313_175223349	0.00325596	CCAGCAU	ENST00000359546.4|CPLX2|ENSG00000145920.10|complexin 2
hg19_v2_chr20_+_20348740_20348765	0.00306299	CCAGCAU	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chr9_-_37465396_37465454	0.00284572	CCAGCAU	ENST00000307750.4|ZBTB5|ENSG00000168795.4|zinc finger and BTB domain containing 5
hg19_v2_chr12_-_10875831_10876025	0.00276082	CCAGCAU	ENST00000279550.7|YBX3|ENSG00000060138.8|Y box binding protein 3 	ENST00000228251.4|YBX3|ENSG00000060138.8|Y box binding protein 3
hg19_v2_chr17_-_4269768_4269835	0.002692	CCAGCAU	ENST00000396981.2|UBE2G1|ENSG00000132388.8|ubiquitin-conjugating enzyme E2G 1
hg19_v2_chr18_-_31803435_31803515	0.00263318	CCAGCAU	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr7_+_72349920_72349959	0.00258789	CCAGCAU	ENST00000395270.1|POM121|ENSG00000196313.7|POM121 transmembrane nucleoporin 	ENST00000446813.1|POM121|ENSG00000196313.7|POM121 transmembrane nucleoporin 	ENST00000257622.4|POM121|ENSG00000196313.7|POM121 transmembrane nucleoporin
hg19_v2_chr14_+_23775971_23776000	0.00252635	CCAGCAU	ENST00000250405.5|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr9_-_34126730_34126771	0.0024627	CCAGCAU	ENST00000361264.4|DCAF12|ENSG00000198876.8|DDB1 and CUL4 associated factor 12
hg19_v2_chr14_+_103243813_103243955	0.00243132	CCAGCAU	ENST00000560371.1|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000347662.4|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000392745.2|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000539721.1|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000560463.1|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3
hg19_v2_chr2_-_85788605_85788632	0.00239858	CCAGCAU	ENST00000233838.4|GGCX|ENSG00000115486.7|gamma-glutamyl carboxylase
hg19_v2_chr3_-_28390581_28390618	0.00228809	CCAGCAU	ENST00000479665.1|AZI2|ENSG00000163512.9|5-azacytidine induced 2
hg19_v2_chr18_-_9614515_9614583	0.00225507	CCAGCAU	ENST00000400556.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1 	ENST00000400555.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr3_+_51422478_51422478	0.00212329	CCAGCAU	ENST00000528157.1|MANF|ENSG00000145050.11|mesencephalic astrocyte-derived neurotrophic factor
hg19_v2_chr2_-_166930131_166930149	0.00206498	CCAGCAU	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr5_-_45696253_45696427	0.00203548	CCAGCAU	ENST00000303230.4|HCN1|ENSG00000164588.4|hyperpolarization activated cyclic nucleotide-gated potassium channel 1
hg19_v2_chr1_-_51763661_51763672	0.00190658	CCAGCAU	ENST00000530004.1|TTC39A|ENSG00000085831.11|tetratricopeptide repeat domain 39A
hg19_v2_chr5_+_109025067_109025146	0.00186497	CCAGCAU	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr1_-_28415204_28415227	0.00184469	CCAGCAU	ENST00000373871.3|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr9_-_37034028_37034157	0.00178668	CCAGCAU	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr14_-_39901618_39901704	0.00176858	CCAGCAU	ENST00000554932.1|FBXO33|ENSG00000165355.7|F-box protein 33 	ENST00000298097.7|FBXO33|ENSG00000165355.7|F-box protein 33
hg19_v2_chr9_-_111929560_111929571	0.00171399	CCAGCAU	ENST00000561981.2|FRRS1L|ENSG00000260230.2|ferric-chelate reductase 1-like
hg19_v2_chr2_-_152684977_152685021	0.00168728	CCAGCAU	ENST00000428992.2|ARL5A|ENSG00000162980.12|ADP-ribosylation factor-like 5A 	ENST00000295087.8|ARL5A|ENSG00000162980.12|ADP-ribosylation factor-like 5A
hg19_v2_chr12_+_74931551_74931656	0.00155125	CCAGCAU	ENST00000519948.2|ATXN7L3B|ENSG00000253719.2|ataxin 7-like 3B
hg19_v2_chr7_-_158622210_158622319	0.00154727	CCAGCAU	ENST00000251527.5|ESYT2|ENSG00000117868.11|extended synaptotagmin-like protein 2
hg19_v2_chr10_+_73975742_73975830	0.0015191	CCAGCAU	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr7_+_98972298_98972326	0.00149503	CCAGCAU	ENST00000252725.5|ARPC1B|ENSG00000130429.8|actin related protein 2/3 complex, subunit 1B, 41kDa
hg19_v2_chr1_+_182992545_182992630	0.00149229	CCAGCAU	ENST00000258341.4|LAMC1|ENSG00000135862.5|laminin, gamma 1 (formerly LAMB2)
hg19_v2_chr10_-_94003003_94003013	0.00145275	CCAGCAU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr9_+_35749203_35749350	0.00138677	CCAGCAU	ENST00000456972.2|RGP1|ENSG00000107185.8|RGP1 retrograde golgi transport homolog (S. cerevisiae) 	ENST00000378078.4|RGP1|ENSG00000107185.8|RGP1 retrograde golgi transport homolog (S. cerevisiae)
hg19_v2_chr21_+_34915337_34915397	0.00131093	CCAGCAU	ENST00000290239.6|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000381692.2|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000300278.4|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000381679.4|SON|ENSG00000159140.13|SON DNA binding protein
hg19_v2_chr12_-_57400227_57400245	0.00125124	CCAGCAU	ENST00000300101.2|ZBTB39|ENSG00000166860.2|zinc finger and BTB domain containing 39
hg19_v2_chr1_-_40137710_40137824	0.00125074	CCAGCAU	ENST00000235628.1|NT5C1A|ENSG00000116981.3|5'-nucleotidase, cytosolic IA
hg19_v2_chr6_+_37787262_37787291	0.00112609	CCAGCAU	ENST00000287218.4|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr16_-_69419871_69419927	0.00111645	CCAGCAU	ENST00000603068.1|TERF2|ENSG00000132604.6|telomeric repeat binding factor 2 	ENST00000254942.3|TERF2|ENSG00000132604.6|telomeric repeat binding factor 2 	ENST00000567296.2|TERF2|ENSG00000132604.6|telomeric repeat binding factor 2
hg19_v2_chr5_+_61602055_61602083	0.00111137	CCAGCAU	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr2_-_220094294_220094439	0.00107003	CCAGCAU	ENST00000436856.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000428226.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000409422.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000431715.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000457841.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000439812.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000361242.4|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000396761.2|ATG9A|ENSG00000198925.6|autophagy related 9A
hg19_v2_chr1_+_229440129_229440129	0.00102527	CCAGCAU	ENST00000366688.3|SPHAR|ENSG00000213029.2|S-phase response (cyclin related)
hg19_v2_chr7_+_74072011_74072119	0.000991381	CCAGCAU	ENST00000324896.4|GTF2I|ENSG00000077809.8|general transcription factor IIi 	ENST00000353920.4|GTF2I|ENSG00000077809.8|general transcription factor IIi 	ENST00000346152.4|GTF2I|ENSG00000077809.8|general transcription factor IIi 	ENST00000416070.1|GTF2I|ENSG00000077809.8|general transcription factor IIi
hg19_v2_chr4_-_55991752_55991770	0.000941727	CCAGCAU	ENST00000263923.4|KDR|ENSG00000128052.8|kinase insert domain receptor (a type III receptor tyrosine kinase)
hg19_v2_chr8_-_98290087_98290197	0.000937517	CCAGCAU	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr9_+_140100113_140100215	0.000920351	CCAGCAU	ENST00000371521.4|NDOR1|ENSG00000188566.7|NADPH dependent diflavin oxidoreductase 1 	ENST00000344894.5|NDOR1|ENSG00000188566.7|NADPH dependent diflavin oxidoreductase 1 	ENST00000427047.2|NDOR1|ENSG00000188566.7|NADPH dependent diflavin oxidoreductase 1 	ENST00000458322.2|NDOR1|ENSG00000188566.7|NADPH dependent diflavin oxidoreductase 1
hg19_v2_chr17_+_46125707_46125746	0.000885323	CCAGCAU	ENST00000584137.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000362042.3|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000585291.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000357480.5|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1
hg19_v2_chr15_-_75249793_75249810	0.000877939	CCAGCAU	ENST00000322177.5|RPP25|ENSG00000178718.5|ribonuclease P/MRP 25kDa subunit
hg19_v2_chr12_+_62654119_62654142	0.000862027	CCAGCAU	ENST00000353364.3|USP15|ENSG00000135655.9|ubiquitin specific peptidase 15 	ENST00000549523.1|USP15|ENSG00000135655.9|ubiquitin specific peptidase 15 	ENST00000280377.5|USP15|ENSG00000135655.9|ubiquitin specific peptidase 15
hg19_v2_chr1_-_115053781_115053853	0.000854292	CCAGCAU	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr6_-_116601044_116601106	0.000713671	CCAGCAU	ENST00000368608.3|TSPYL1|ENSG00000189241.6|TSPY-like 1
hg19_v2_chr16_-_20911641_20911720	0.000556028	CCAGCAU	ENST00000564349.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000324344.4|DCUN1D3|ENSG00000188215.5|DCN1, defective in cullin neddylation 1, domain containing 3
hg19_v2_chr11_-_10562710_10562782	0.000487788	CCAGCAU	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr11_+_111473108_111473226	0.00048292	CCAGCAU	ENST00000304987.3|SIK2|ENSG00000170145.4|salt-inducible kinase 2
hg19_v2_chr7_-_25019760_25019855	0.000470965	CCAGCAU	ENST00000352860.1|OSBPL3|ENSG00000070882.8|oxysterol binding protein-like 3 	ENST00000353930.1|OSBPL3|ENSG00000070882.8|oxysterol binding protein-like 3 	ENST00000431825.2|OSBPL3|ENSG00000070882.8|oxysterol binding protein-like 3 	ENST00000313367.2|OSBPL3|ENSG00000070882.8|oxysterol binding protein-like 3
hg19_v2_chr7_-_26240357_26240377	0.000452744	CCAGCAU	ENST00000354667.4|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1 	ENST00000356674.7|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v2_chr2_-_70475730_70475798	0.000404333	CCAGCAU	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr12_+_69864129_69864222	0.000398787	CCAGCAU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr12_-_12674032_12674059	0.000375179	CCAGCAU	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr10_+_102295616_102295713	0.000362319	CCAGCAU	ENST00000299163.6|HIF1AN|ENSG00000166135.9|hypoxia inducible factor 1, alpha subunit inhibitor
hg19_v2_chr9_+_140032842_140032842	0.000313202	CCAGCAU	ENST00000371561.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1 	ENST00000315048.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1
hg19_v2_chr3_-_14166316_14166383	0.000167244	CCAGCAU	ENST00000396914.3|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4 	ENST00000295767.5|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4
hg19_v2_chr2_-_183731882_183731896	0.000163333	CCAGCAU	ENST00000295113.4|FRZB|ENSG00000162998.4|frizzled-related protein
hg19_v2_chr10_+_105726862_105726986	0.00015845	CCAGCAU	ENST00000335753.4|SLK|ENSG00000065613.9|STE20-like kinase 	ENST00000369755.3|SLK|ENSG00000065613.9|STE20-like kinase
hg19_v2_chr17_+_80317121_80317128	0.000154354	CCAGCAU	ENST00000333437.4|TEX19|ENSG00000182459.4|testis expressed 19
hg19_v2_chr9_-_123964114_123964210	0.000134826	CCAGCAU	ENST00000373840.4|RAB14|ENSG00000119396.6|RAB14, member RAS oncogene family
hg19_v2_chr16_+_50187556_50187779	0.000104261	CCAGCAU	ENST00000561678.1|PAPD5|ENSG00000121274.8|PAP associated domain containing 5 	ENST00000357464.3|PAPD5|ENSG00000121274.8|PAP associated domain containing 5
