hg19_v2_chr12_-_91574142_91574289	2.80521	FOXA2_FOXJ3	ENST00000547937.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr12_-_15038779_15038860	2.09685	FOXA2_FOXJ3	ENST00000228938.5|MGP|ENSG00000111341.5|matrix Gla protein 	ENST00000539261.1|MGP|ENSG00000111341.5|matrix Gla protein
hg19_v2_chr3_+_69928256_69928385	1.13787	FOXA2_FOXJ3	ENST00000394355.2|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr12_-_92539614_92539673	1.07306	FOXA2_FOXJ3	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr10_+_70847852_70847874	1.05285	FOXA2_FOXJ3	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr2_+_233527443_233527542	0.949979	FOXA2_FOXJ3	ENST00000410095.1|EFHD1|ENSG00000115468.7|EF-hand domain family, member D1
hg19_v2_chr4_-_138453606_138453673	0.919033	FOXA2_FOXJ3	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr20_+_45338126_45338303	0.894905	FOXA2_FOXJ3	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr1_+_163039143_163039159	0.848264	FOXA2_FOXJ3	ENST00000531057.1|RGS4|ENSG00000117152.9|regulator of G-protein signaling 4 	ENST00000527809.1|RGS4|ENSG00000117152.9|regulator of G-protein signaling 4 	ENST00000367908.4|RGS4|ENSG00000117152.9|regulator of G-protein signaling 4
hg19_v2_chr1_+_221054584_221054584	0.749926	FOXA2_FOXJ3	ENST00000549319.1|HLX|ENSG00000136630.11|H2.0-like homeobox
hg19_v2_chr3_+_148447887_148447911	0.729042	FOXA2_FOXJ3	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chrX_+_9431324_9431371	0.713957	FOXA2_FOXJ3	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr5_+_140529630_140529683	0.633152	FOXA2_FOXJ3	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr1_-_24194771_24194851	0.610232	FOXA2_FOXJ3	ENST00000374479.3|FUCA1|ENSG00000179163.11|fucosidase, alpha-L- 1, tissue
hg19_v2_chr12_+_59989918_59989965	0.597557	FOXA2_FOXJ3	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr17_-_66951474_66951550	0.597174	FOXA2_FOXJ3	ENST00000269080.2|ABCA8|ENSG00000141338.9|ATP-binding cassette, sub-family A (ABC1), member 8
hg19_v2_chr2_-_202563414_202563426	0.582808	FOXA2_FOXJ3	ENST00000409474.3|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 	ENST00000315506.7|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 	ENST00000359962.5|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
hg19_v2_chr5_-_19988339_19988358	0.573435	FOXA2_FOXJ3	ENST00000382275.1|CDH18|ENSG00000145526.7|cadherin 18, type 2
hg19_v2_chr6_-_117747015_117747048	0.570461	FOXA2_FOXJ3	ENST00000368508.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase 	ENST00000368507.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase
hg19_v2_chr2_+_88047606_88047606	0.562015	FOXA2_FOXJ3	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr12_-_15374343_15374416	0.560508	FOXA2_FOXJ3	ENST00000256953.2|RERG|ENSG00000134533.2|RAS-like, estrogen-regulated, growth inhibitor 	ENST00000546331.1|RERG|ENSG00000134533.2|RAS-like, estrogen-regulated, growth inhibitor
hg19_v2_chr6_+_122793058_122793087	0.535579	FOXA2_FOXJ3	ENST00000392491.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr2_+_109223595_109223617	0.528842	FOXA2_FOXJ3	ENST00000410093.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr14_-_74551096_74551171	0.509892	FOXA2_FOXJ3	ENST00000350259.4|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chrX_+_85969626_85969664	0.507932	FOXA2_FOXJ3	ENST00000484479.1|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr9_+_120466610_120466628	0.498922	FOXA2_FOXJ3	ENST00000394487.4|TLR4|ENSG00000136869.13|toll-like receptor 4
hg19_v2_chr1_-_92371839_92371892	0.495737	FOXA2_FOXJ3	ENST00000370399.2|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr2_+_201450591_201450680	0.491274	FOXA2_FOXJ3	ENST00000374700.2|AOX1|ENSG00000138356.9|aldehyde oxidase 1
hg19_v2_chr2_+_120770581_120770608	0.490583	FOXA2_FOXJ3	ENST00000263713.5|EPB41L5|ENSG00000115109.9|erythrocyte membrane protein band 4.1 like 5
hg19_v2_chr4_-_138453559_138453572	0.474819	FOXA2_FOXJ3	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr9_+_120466650_120466659	0.468975	FOXA2_FOXJ3	ENST00000355622.6|TLR4|ENSG00000136869.13|toll-like receptor 4
hg19_v2_chr3_-_187455680_187455732	0.46782	FOXA2_FOXJ3	ENST00000438077.1|BCL6|ENSG00000113916.13|B-cell CLL/lymphoma 6
hg19_v2_chr6_+_101846664_101846702	0.453865	FOXA2_FOXJ3	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr2_+_175260514_175260536	0.448277	FOXA2_FOXJ3	ENST00000424069.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000427038.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr9_-_21305312_21305312	0.436289	FOXA2_FOXJ3	ENST00000259555.4|IFNA5|ENSG00000147873.4|interferon, alpha 5
hg19_v2_chr14_+_88471468_88471500	0.406816	FOXA2_FOXJ3	ENST00000267549.3|GPR65|ENSG00000140030.4|G protein-coupled receptor 65
hg19_v2_chr18_-_25616519_25616549	0.40582	FOXA2_FOXJ3	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr1_+_150122034_150122170	0.404521	FOXA2_FOXJ3	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr2_+_175260451_175260513	0.3941	FOXA2_FOXJ3	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr1_+_185703513_185703683	0.390845	FOXA2_FOXJ3	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr17_-_26662440_26662463	0.390307	FOXA2_FOXJ3	ENST00000578122.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas)
hg19_v2_chr7_+_6617039_6617136	0.386119	FOXA2_FOXJ3	ENST00000405731.3|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396713.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396707.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000335965.6|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396709.1|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000483589.1|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396706.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4
hg19_v2_chr17_-_26662464_26662519	0.384757	FOXA2_FOXJ3	ENST00000579419.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000585313.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000395418.3|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000578985.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000577498.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000585089.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000357896.3|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas)
hg19_v2_chr14_-_74551172_74551196	0.383938	FOXA2_FOXJ3	ENST00000553458.1|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr21_-_31869451_31869451	0.378008	FOXA2_FOXJ3	ENST00000334058.2|KRTAP19-4|ENSG00000186967.6|keratin associated protein 19-4
hg19_v2_chr17_-_19290483_19290553	0.37332	FOXA2_FOXJ3	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr7_+_149570049_149570057	0.368344	FOXA2_FOXJ3	ENST00000421974.2|ATP6V0E2|ENSG00000171130.13|ATPase, H+ transporting V0 subunit e2 	ENST00000456496.2|ATP6V0E2|ENSG00000171130.13|ATPase, H+ transporting V0 subunit e2
hg19_v2_chr5_-_159846399_159846412	0.367471	FOXA2_FOXJ3	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr8_+_70404996_70405088	0.34853	FOXA2_FOXJ3	ENST00000402687.4|SULF1|ENSG00000137573.9|sulfatase 1 	ENST00000419716.3|SULF1|ENSG00000137573.9|sulfatase 1
hg19_v2_chr19_-_58662139_58662182	0.347381	FOXA2_FOXJ3	ENST00000598312.1|ZNF329|ENSG00000181894.10|zinc finger protein 329
hg19_v2_chr2_+_201170703_201170716	0.343896	FOXA2_FOXJ3	ENST00000358677.5|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr15_-_55657428_55657474	0.342511	FOXA2_FOXJ3	ENST00000568543.1|CCPG1|ENSG00000260916.1|cell cycle progression 1
hg19_v2_chr5_+_159436120_159436176	0.331853	FOXA2_FOXJ3	ENST00000522793.1|TTC1|ENSG00000113312.6|tetratricopeptide repeat domain 1 	ENST00000231238.5|TTC1|ENSG00000113312.6|tetratricopeptide repeat domain 1
hg19_v2_chr7_+_151038850_151038915	0.321226	FOXA2_FOXJ3	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr6_+_21666633_21666681	0.305511	FOXA2_FOXJ3	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr1_+_178310581_178310606	0.304575	FOXA2_FOXJ3	ENST00000462775.1|RASAL2|ENSG00000075391.12|RAS protein activator like 2
hg19_v2_chr2_+_65283506_65283527	0.298285	FOXA2_FOXJ3	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr10_-_25010795_25010904	0.296482	FOXA2_FOXJ3	ENST00000416305.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21 	ENST00000376410.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr12_+_79439405_79439421	0.295507	FOXA2_FOXJ3	ENST00000552744.1|SYT1|ENSG00000067715.9|synaptotagmin I
hg19_v2_chr13_-_39564993_39565002	0.294058	FOXA2_FOXJ3	ENST00000423210.1|STOML3|ENSG00000133115.7|stomatin (EPB72)-like 3
hg19_v2_chr6_+_108882069_108882087	0.286756	FOXA2_FOXJ3	ENST00000406360.1|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr17_-_30185946_30185970	0.2856	FOXA2_FOXJ3	ENST00000579741.1|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr7_+_106809406_106809460	0.285111	FOXA2_FOXJ3	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr5_-_146833222_146833261	0.278457	FOXA2_FOXJ3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr1_+_78470530_78470551	0.270845	FOXA2_FOXJ3	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr2_+_109204743_109204855	0.27079	FOXA2_FOXJ3	ENST00000332345.6|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr5_-_131132614_131132648	0.26912	FOXA2_FOXJ3	ENST00000307968.7|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000307954.8|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr6_+_12717892_12717903	0.268231	FOXA2_FOXJ3	ENST00000379350.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr2_+_65283529_65283599	0.267258	FOXA2_FOXJ3	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr19_-_9546177_9546224	0.266617	FOXA2_FOXJ3	ENST00000592292.1|ZNF266|ENSG00000174652.13|zinc finger protein 266 	ENST00000588221.1|ZNF266|ENSG00000174652.13|zinc finger protein 266
hg19_v2_chrX_-_106959631_106959775	0.260229	FOXA2_FOXJ3	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chrX_+_10124977_10125036	0.258231	FOXA2_FOXJ3	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr13_-_49975632_49975735	0.256418	FOXA2_FOXJ3	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr17_-_30185971_30186093	0.251928	FOXA2_FOXJ3	ENST00000378634.2|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr2_+_12857043_12857127	0.248593	FOXA2_FOXJ3	ENST00000381465.2|TRIB2|ENSG00000071575.7|tribbles pseudokinase 2
hg19_v2_chr2_+_109204909_109204928	0.246341	FOXA2_FOXJ3	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr2_+_210517895_210518021	0.244358	FOXA2_FOXJ3	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr2_-_87248975_87248975	0.234919	FOXA2_FOXJ3	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chr10_-_14050522_14050584	0.234356	FOXA2_FOXJ3	ENST00000342409.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chr2_-_224702740_224702761	0.231456	FOXA2_FOXJ3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr13_-_61989655_61989655	0.227385	FOXA2_FOXJ3	ENST00000409204.4|PCDH20|ENSG00000197991.10|protocadherin 20
hg19_v2_chr19_+_18111927_18111988	0.222708	FOXA2_FOXJ3	ENST00000379656.3|ARRDC2|ENSG00000105643.5|arrestin domain containing 2
hg19_v2_chr5_+_135468516_135468621	0.222385	FOXA2_FOXJ3	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr3_-_150920979_150921009	0.221969	FOXA2_FOXJ3	ENST00000309180.5|GPR171|ENSG00000174946.5|G protein-coupled receptor 171 	ENST00000480322.1|GPR171|ENSG00000174946.5|G protein-coupled receptor 171
hg19_v2_chr15_-_81616446_81616466	0.221239	FOXA2_FOXJ3	ENST00000302824.6|STARD5|ENSG00000172345.9|StAR-related lipid transfer (START) domain containing 5
hg19_v2_chr6_-_87804815_87804830	0.220562	FOXA2_FOXJ3	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr11_-_26593677_26593708	0.220282	FOXA2_FOXJ3	ENST00000527569.1|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr3_+_159570722_159570733	0.220174	FOXA2_FOXJ3	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chrX_+_120181457_120181474	0.217686	FOXA2_FOXJ3	ENST00000328078.1|GLUD2|ENSG00000182890.3|glutamate dehydrogenase 2
hg19_v2_chr5_-_88119580_88119605	0.215701	FOXA2_FOXJ3	ENST00000539796.1|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr10_-_4285923_4286104	0.212707	FOXA2_FOXJ3	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chrX_+_54947229_54947284	0.206665	FOXA2_FOXJ3	ENST00000442098.1|TRO|ENSG00000067445.16|trophinin 	ENST00000430420.1|TRO|ENSG00000067445.16|trophinin 	ENST00000453081.1|TRO|ENSG00000067445.16|trophinin 	ENST00000173898.7|TRO|ENSG00000067445.16|trophinin 	ENST00000319167.8|TRO|ENSG00000067445.16|trophinin 	ENST00000375022.4|TRO|ENSG00000067445.16|trophinin 	ENST00000399736.1|TRO|ENSG00000067445.16|trophinin 	ENST00000440072.1|TRO|ENSG00000067445.16|trophinin 	ENST00000420798.2|TRO|ENSG00000067445.16|trophinin 	ENST00000431115.1|TRO|ENSG00000067445.16|trophinin 	ENST00000440759.1|TRO|ENSG00000067445.16|trophinin 	ENST00000375041.2|TRO|ENSG00000067445.16|trophinin
hg19_v2_chr12_-_92536433_92536459	0.20591	FOXA2_FOXJ3	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr2_+_120770645_120770669	0.203936	FOXA2_FOXJ3	ENST00000443902.2|EPB41L5|ENSG00000115109.9|erythrocyte membrane protein band 4.1 like 5
hg19_v2_chr12_+_21679220_21679252	0.20161	FOXA2_FOXJ3	ENST00000256969.2|C12orf39|ENSG00000134548.5|chromosome 12 open reading frame 39
hg19_v2_chr11_+_20044096_20044116	0.201576	FOXA2_FOXJ3	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr1_+_74701062_74701099	0.199268	FOXA2_FOXJ3	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr4_+_74347400_74347479	0.198585	FOXA2_FOXJ3	ENST00000226355.3|AFM|ENSG00000079557.3|afamin
hg19_v2_chr11_-_26593779_26593795	0.195191	FOXA2_FOXJ3	ENST00000529533.1|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr16_+_66442411_66442461	0.194791	FOXA2_FOXJ3	ENST00000499966.1|LINC00920|ENSG00000246898.1|long intergenic non-protein coding RNA 920
hg19_v2_chr1_-_57431679_57431810	0.194711	FOXA2_FOXJ3	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr5_+_140625147_140625147	0.190237	FOXA2_FOXJ3	ENST00000231173.3|PCDHB15|ENSG00000113248.3|protocadherin beta 15
hg19_v2_chr1_-_20126365_20126414	0.189942	FOXA2_FOXJ3	ENST00000294543.6|TMCO4|ENSG00000162542.9|transmembrane and coiled-coil domains 4 	ENST00000375122.2|TMCO4|ENSG00000162542.9|transmembrane and coiled-coil domains 4
hg19_v2_chr2_-_175260368_175260450	0.183498	FOXA2_FOXJ3	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr10_+_90672113_90672113	0.17953	FOXA2_FOXJ3	ENST00000371922.1|STAMBPL1|ENSG00000138134.7|STAM binding protein-like 1
hg19_v2_chr5_+_140729649_140729828	0.178873	FOXA2_FOXJ3	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr16_-_80926457_80926494	0.177571	FOXA2_FOXJ3	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr6_-_122792919_122792970	0.177036	FOXA2_FOXJ3	ENST00000339697.4|SERINC1|ENSG00000111897.6|serine incorporator 1
hg19_v2_chr1_+_203765437_203765437	0.175367	FOXA2_FOXJ3	ENST00000550078.1|ZBED6|ENSG00000257315.1|zinc finger, BED-type containing 6
hg19_v2_chr2_-_65593784_65593817	0.173814	FOXA2_FOXJ3	ENST00000443619.2|SPRED2|ENSG00000198369.5|sprouty-related, EVH1 domain containing 2
hg19_v2_chr4_-_21950356_21950439	0.170025	FOXA2_FOXJ3	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr5_+_141346385_141346437	0.169603	FOXA2_FOXJ3	ENST00000513019.1|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000356143.1|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr9_+_70856397_70856397	0.169242	FOXA2_FOXJ3	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr2_+_166095898_166095940	0.168672	FOXA2_FOXJ3	ENST00000424833.1|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000375437.2|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000357398.3|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr4_+_88754113_88754139	0.167945	FOXA2_FOXJ3	ENST00000560249.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000540395.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000511670.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000361056.3|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr12_-_7596735_7596781	0.167883	FOXA2_FOXJ3	ENST00000416109.2|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000396630.1|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000313599.3|CD163L1|ENSG00000177675.4|CD163 molecule-like 1
hg19_v2_chr5_+_140792614_140792743	0.167463	FOXA2_FOXJ3	ENST00000398610.2|PCDHGA10|ENSG00000253846.1|protocadherin gamma subfamily A, 10
hg19_v2_chr10_-_28623368_28623415	0.165446	FOXA2_FOXJ3	ENST00000441595.2|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr1_+_246729724_246729794	0.164139	FOXA2_FOXJ3	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr14_+_88851874_88852056	0.163409	FOXA2_FOXJ3	ENST00000393545.4|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000356583.5|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000555401.1|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000553885.1|SPATA7|ENSG00000042317.12|spermatogenesis associated 7
hg19_v2_chr2_-_32490859_32490923	0.163402	FOXA2_FOXJ3	ENST00000404025.2|NLRC4|ENSG00000091106.14|NLR family, CARD domain containing 4
hg19_v2_chr6_+_161123270_161123278	0.163252	FOXA2_FOXJ3	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr5_-_131132658_131132719	0.160944	FOXA2_FOXJ3	ENST00000514667.1|CTC-432M15.3|ENSG00000273217.1|Folliculin-interacting protein 1  	ENST00000511848.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000510461.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr2_+_54342574_54342641	0.159806	FOXA2_FOXJ3	ENST00000303536.4|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type 	ENST00000394666.3|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr2_+_74120094_74120142	0.159687	FOXA2_FOXJ3	ENST00000409731.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000345517.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409918.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000442912.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409624.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric
hg19_v2_chr9_-_116163400_116163613	0.159606	FOXA2_FOXJ3	ENST00000277315.5|ALAD|ENSG00000148218.11|aminolevulinate dehydratase 	ENST00000448137.1|ALAD|ENSG00000148218.11|aminolevulinate dehydratase 	ENST00000409155.3|ALAD|ENSG00000148218.11|aminolevulinate dehydratase
hg19_v2_chr20_-_30311703_30311792	0.159438	FOXA2_FOXJ3	ENST00000450273.1|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000456404.1|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420488.1|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000439267.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr2_+_61372226_61372273	0.159109	FOXA2_FOXJ3	ENST00000426997.1|C2orf74|ENSG00000237651.2|chromosome 2 open reading frame 74
hg19_v2_chr20_+_56964169_56964182	0.154462	FOXA2_FOXJ3	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr3_-_58523010_58523078	0.152926	FOXA2_FOXJ3	ENST00000459701.2|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain 	ENST00000302819.5|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain
hg19_v2_chr3_-_105588231_105588396	0.151625	FOXA2_FOXJ3	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr5_+_147774275_147774340	0.148906	FOXA2_FOXJ3	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr3_-_127455200_127455223	0.148756	FOXA2_FOXJ3	ENST00000398101.3|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr1_+_174844645_174844684	0.14809	FOXA2_FOXJ3	ENST00000486220.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr10_-_49482907_49482941	0.148029	FOXA2_FOXJ3	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr5_-_153418407_153418503	0.147907	FOXA2_FOXJ3	ENST00000522858.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000522634.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000523705.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000524246.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000520313.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000518102.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000351797.4|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000520667.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000519808.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000522395.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2
hg19_v2_chr1_-_241803679_241803701	0.146751	FOXA2_FOXJ3	ENST00000331838.5|OPN3|ENSG00000054277.8|opsin 3
hg19_v2_chr20_+_33104199_33104260	0.145694	FOXA2_FOXJ3	ENST00000357156.2|DYNLRB1|ENSG00000125971.12|dynein, light chain, roadblock-type 1 	ENST00000417166.2|DYNLRB1|ENSG00000125971.12|dynein, light chain, roadblock-type 1 	ENST00000300469.9|DYNLRB1|ENSG00000125971.12|dynein, light chain, roadblock-type 1 	ENST00000374846.3|DYNLRB1|ENSG00000125971.12|dynein, light chain, roadblock-type 1
hg19_v2_chr12_-_49582978_49583107	0.145105	FOXA2_FOXJ3	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chrX_+_153455547_153455547	0.14492	FOXA2_FOXJ3	ENST00000430054.1|OPN1MW|ENSG00000147380.6|opsin 1 (cone pigments), medium-wave-sensitive
hg19_v2_chr15_-_40600026_40600061	0.144726	FOXA2_FOXJ3	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr1_-_149982624_149982719	0.141061	FOXA2_FOXJ3	ENST00000417191.1|OTUD7B|ENSG00000163113.10|OTU domain containing 7B 	ENST00000369135.4|OTUD7B|ENSG00000163113.10|OTU domain containing 7B
hg19_v2_chr1_-_241803649_241803678	0.140858	FOXA2_FOXJ3	ENST00000366554.2|OPN3|ENSG00000054277.8|opsin 3
hg19_v2_chr22_-_43036607_43036607	0.140276	FOXA2_FOXJ3	ENST00000505920.1|ATP5L2|ENSG00000249222.1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2
hg19_v2_chr7_-_6098770_6098861	0.13925	FOXA2_FOXJ3	ENST00000536084.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1 	ENST00000446699.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1 	ENST00000199389.6|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1
hg19_v2_chr4_+_88754069_88754112	0.139127	FOXA2_FOXJ3	ENST00000395102.4|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000497649.2|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr9_-_70490107_70490246	0.137493	FOXA2_FOXJ3	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr19_+_36630454_36630489	0.136589	FOXA2_FOXJ3	ENST00000246533.3|CAPNS1|ENSG00000126247.6|calpain, small subunit 1
hg19_v2_chrX_-_47863348_47863412	0.135842	FOXA2_FOXJ3	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr19_+_18208603_18208614	0.134905	FOXA2_FOXJ3	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr17_+_71229346_71229365	0.131617	FOXA2_FOXJ3	ENST00000535032.2|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80 	ENST00000582793.1|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80
hg19_v2_chr3_+_180319918_180320020	0.130424	FOXA2_FOXJ3	ENST00000296015.4|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14 	ENST00000491380.1|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14 	ENST00000412756.2|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14 	ENST00000382584.4|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14
hg19_v2_chrX_+_16668278_16668282	0.129769	FOXA2_FOXJ3	ENST00000380200.3|S100G|ENSG00000169906.5|S100 calcium binding protein G
hg19_v2_chr3_-_151102529_151102600	0.129678	FOXA2_FOXJ3	ENST00000302632.3|P2RY12|ENSG00000169313.9|purinergic receptor P2Y, G-protein coupled, 12
hg19_v2_chr1_+_26036093_26036093	0.129388	FOXA2_FOXJ3	ENST00000374329.1|MAN1C1|ENSG00000117643.10|mannosidase, alpha, class 1C, member 1
hg19_v2_chr11_-_26593649_26593670	0.128931	FOXA2_FOXJ3	ENST00000455601.2|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr4_-_76928641_76928668	0.128228	FOXA2_FOXJ3	ENST00000264888.5|CXCL9|ENSG00000138755.5|chemokine (C-X-C motif) ligand 9
hg19_v2_chr7_-_144435985_144436015	0.128147	FOXA2_FOXJ3	ENST00000549981.1|TPK1|ENSG00000196511.9|thiamin pyrophosphokinase 1
hg19_v2_chr6_+_168418553_168418581	0.126331	FOXA2_FOXJ3	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr4_-_140223614_140223668	0.124772	FOXA2_FOXJ3	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr14_+_105267250_105267250	0.124594	FOXA2_FOXJ3	ENST00000342537.7|ZBTB42|ENSG00000179627.9|zinc finger and BTB domain containing 42
hg19_v2_chr13_-_103346854_103346854	0.124265	FOXA2_FOXJ3	ENST00000267273.6|METTL21C|ENSG00000139780.7|methyltransferase like 21C
hg19_v2_chr19_+_57640011_57640011	0.123665	FOXA2_FOXJ3	ENST00000598197.1|USP29|ENSG00000131864.6|ubiquitin specific peptidase 29
hg19_v2_chr11_-_9286921_9286937	0.123423	FOXA2_FOXJ3	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr19_-_52255107_52255162	0.122501	FOXA2_FOXJ3	ENST00000595042.1|FPR1|ENSG00000171051.4|formyl peptide receptor 1 	ENST00000304748.4|FPR1|ENSG00000171051.4|formyl peptide receptor 1
hg19_v2_chr9_-_86432547_86432699	0.122059	FOXA2_FOXJ3	ENST00000376365.3|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1 	ENST00000376371.2|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1
hg19_v2_chr17_-_39183452_39183468	0.118197	FOXA2_FOXJ3	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr8_+_26247878_26247981	0.117428	FOXA2_FOXJ3	ENST00000518611.1|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr3_+_119316689_119316710	0.116005	FOXA2_FOXJ3	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr12_-_76462713_76462773	0.115877	FOXA2_FOXJ3	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr3_-_169487617_169487683	0.115229	FOXA2_FOXJ3	ENST00000330368.2|ACTRT3|ENSG00000184378.2|actin-related protein T3
hg19_v2_chr8_-_145754428_145754516	0.114001	FOXA2_FOXJ3	ENST00000527462.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000313465.5|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000524821.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82
hg19_v2_chr4_-_70826725_70826725	0.113616	FOXA2_FOXJ3	ENST00000353151.3|CSN2|ENSG00000135222.6|casein beta
hg19_v2_chr19_-_36523709_36523796	0.113511	FOXA2_FOXJ3	ENST00000592017.1|CLIP3|ENSG00000105270.10|CAP-GLY domain containing linker protein 3 	ENST00000360535.4|CLIP3|ENSG00000105270.10|CAP-GLY domain containing linker protein 3
hg19_v2_chr11_-_47447767_47447817	0.113168	FOXA2_FOXJ3	ENST00000530651.1|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3 	ENST00000524447.2|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3 	ENST00000531051.2|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3 	ENST00000526993.1|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3 	ENST00000602866.1|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3
hg19_v2_chr5_-_137674000_137674044	0.113069	FOXA2_FOXJ3	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr1_-_43855479_43855486	0.112468	FOXA2_FOXJ3	ENST00000290663.6|MED8|ENSG00000159479.12|mediator complex subunit 8 	ENST00000372457.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr20_+_48552908_48552949	0.112083	FOXA2_FOXJ3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr16_+_28858004_28858029	0.1102	FOXA2_FOXJ3	ENST00000322610.8|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr8_+_100025476_100025548	0.109983	FOXA2_FOXJ3	ENST00000355155.1|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000357162.2|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000358544.2|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000395996.1|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000441350.2|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast)
hg19_v2_chr19_-_40732594_40732598	0.109786	FOXA2_FOXJ3	ENST00000430325.2|CNTD2|ENSG00000105219.4|cyclin N-terminal domain containing 2 	ENST00000433940.1|CNTD2|ENSG00000105219.4|cyclin N-terminal domain containing 2
hg19_v2_chr10_+_52152766_52152766	0.108388	FOXA2_FOXJ3	ENST00000596442.1|AC069547.2|ENSG00000269700.1|Uncharacterized protein
hg19_v2_chr11_-_47447970_47448029	0.107957	FOXA2_FOXJ3	ENST00000298852.3|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3 	ENST00000530912.1|PSMC3|ENSG00000165916.4|proteasome (prosome, macropain) 26S subunit, ATPase, 3
hg19_v2_chr2_-_3521518_3521518	0.107583	FOXA2_FOXJ3	ENST00000382093.5|ADI1|ENSG00000182551.9|acireductone dioxygenase 1
hg19_v2_chr4_-_170679024_170679104	0.107289	FOXA2_FOXJ3	ENST00000393381.2|C4orf27|ENSG00000056050.6|chromosome 4 open reading frame 27
hg19_v2_chr21_+_40817749_40817868	0.106403	FOXA2_FOXJ3	ENST00000380637.3|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000380634.1|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000458295.1|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000440288.2|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000380631.1|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein
hg19_v2_chr7_-_14028488_14028516	0.106066	FOXA2_FOXJ3	ENST00000405358.4|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr17_-_7531121_7531198	0.105457	FOXA2_FOXJ3	ENST00000573566.1|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2 	ENST00000269298.5|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2
hg19_v2_chr1_+_84609944_84609964	0.105369	FOXA2_FOXJ3	ENST00000370685.3|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr3_+_119316721_119316739	0.10456	FOXA2_FOXJ3	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr1_+_196621002_196621021	0.104446	FOXA2_FOXJ3	ENST00000367429.4|CFH|ENSG00000000971.11|complement factor H 	ENST00000439155.2|CFH|ENSG00000000971.11|complement factor H
hg19_v2_chr20_+_48429233_48429257	0.10339	FOXA2_FOXJ3	ENST00000417961.1|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8
hg19_v2_chr12_-_76879852_76879888	0.103106	FOXA2_FOXJ3	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr6_-_161085291_161085308	0.102829	FOXA2_FOXJ3	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr9_-_13175823_13175869	0.10193	FOXA2_FOXJ3	ENST00000545857.1|MPDZ|ENSG00000107186.12|multiple PDZ domain protein
hg19_v2_chr1_+_161123536_161123588	0.101605	FOXA2_FOXJ3	ENST00000368003.5|UFC1|ENSG00000143222.7|ubiquitin-fold modifier conjugating enzyme 1
hg19_v2_chr1_-_169555779_169555826	0.101174	FOXA2_FOXJ3	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr8_-_100025238_100025272	0.100465	FOXA2_FOXJ3	ENST00000521696.1|RP11-410L14.2|ENSG00000253948.1|RP11-410L14.2
hg19_v2_chr1_-_16763685_16763685	0.0999327	FOXA2_FOXJ3	ENST00000540400.1|SPATA21|ENSG00000187144.7|spermatogenesis associated 21
hg19_v2_chr7_-_38389573_38389623	0.0998642	FOXA2_FOXJ3	ENST00000390344.2|TRGV5|ENSG00000211697.2|T cell receptor gamma variable 5
hg19_v2_chr17_-_41985096_41985139	0.0997886	FOXA2_FOXJ3	ENST00000269095.4|MPP2|ENSG00000108852.10|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) 	ENST00000523220.1|MPP2|ENSG00000108852.10|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
hg19_v2_chr1_-_241799232_241799232	0.0986872	FOXA2_FOXJ3	ENST00000366553.1|CHML|ENSG00000203668.1|choroideremia-like (Rab escort protein 2)
hg19_v2_chr17_-_49021974_49022074	0.0985417	FOXA2_FOXJ3	ENST00000501718.2|RP11-700H6.1|ENSG00000247011.2|RP11-700H6.1
hg19_v2_chr12_-_96390108_96390143	0.0980225	FOXA2_FOXJ3	ENST00000538703.1|HAL|ENSG00000084110.6|histidine ammonia-lyase 	ENST00000261208.3|HAL|ENSG00000084110.6|histidine ammonia-lyase
hg19_v2_chr2_-_27886676_27886714	0.0979287	FOXA2_FOXJ3	ENST00000337768.5|SUPT7L|ENSG00000119760.11|suppressor of Ty 7 (S. cerevisiae)-like
hg19_v2_chr19_+_36132631_36132695	0.0971656	FOXA2_FOXJ3	ENST00000379026.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000379023.4|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000402764.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000479824.1|ETV2|ENSG00000105672.10|ets variant 2
hg19_v2_chr4_+_86749045_86749070	0.0970878	FOXA2_FOXJ3	ENST00000514229.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr18_-_52626622_52626739	0.0970468	FOXA2_FOXJ3	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr4_+_187187098_187187127	0.0964988	FOXA2_FOXJ3	ENST00000403665.2|F11|ENSG00000088926.9|coagulation factor XI 	ENST00000264692.4|F11|ENSG00000088926.9|coagulation factor XI
hg19_v2_chrX_+_153492665_153492665	0.0964955	FOXA2_FOXJ3	ENST00000430419.1|OPN1MW2|ENSG00000166160.5|opsin 1 (cone pigments), medium-wave-sensitive 2
hg19_v2_chr18_+_3449330_3449411	0.0961654	FOXA2_FOXJ3	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr1_-_3566627_3566676	0.0958193	FOXA2_FOXJ3	ENST00000419924.2|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000270708.7|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr6_-_131321863_131321907	0.0953679	FOXA2_FOXJ3	ENST00000528282.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr2_+_110551851_110551977	0.0929845	FOXA2_FOXJ3	ENST00000272454.6|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000430736.1|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000016946.3|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000441344.1|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5
hg19_v2_chr6_-_2751146_2751200	0.0925778	FOXA2_FOXJ3	ENST00000268446.5|MYLK4|ENSG00000145949.8|myosin light chain kinase family, member 4 	ENST00000274643.7|MYLK4|ENSG00000145949.8|myosin light chain kinase family, member 4
hg19_v2_chr11_-_55703876_55703876	0.091895	FOXA2_FOXJ3	ENST00000301532.3|OR5I1|ENSG00000167825.3|olfactory receptor, family 5, subfamily I, member 1
hg19_v2_chr3_-_157221128_157221216	0.0912559	FOXA2_FOXJ3	ENST00000392833.2|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1 	ENST00000362010.2|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr1_+_206579736_206579736	0.0906833	FOXA2_FOXJ3	ENST00000439126.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chrX_-_108725301_108725319	0.089625	FOXA2_FOXJ3	ENST00000218006.2|GUCY2F|ENSG00000101890.4|guanylate cyclase 2F, retinal
hg19_v2_chr17_-_39203519_39203568	0.08814	FOXA2_FOXJ3	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr2_+_46844290_46844384	0.0877625	FOXA2_FOXJ3	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr11_-_5537920_5537935	0.0870344	FOXA2_FOXJ3	ENST00000380184.1|UBQLNL|ENSG00000175518.6|ubiquilin-like
hg19_v2_chr1_-_145610869_145610942	0.086851	FOXA2_FOXJ3	ENST00000334163.3|POLR3C|ENSG00000186141.4|polymerase (RNA) III (DNA directed) polypeptide C (62kD) 	ENST00000369294.1|POLR3C|ENSG00000186141.4|polymerase (RNA) III (DNA directed) polypeptide C (62kD)
hg19_v2_chr14_+_100070869_100070893	0.0867371	FOXA2_FOXJ3	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr10_+_124739911_124739957	0.0864946	FOXA2_FOXJ3	ENST00000405485.1|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr19_+_12721725_12721758	0.0863139	FOXA2_FOXJ3	ENST00000446165.1|ZNF791|ENSG00000173875.9|zinc finger protein 791 	ENST00000343325.4|ZNF791|ENSG00000173875.9|zinc finger protein 791 	ENST00000458122.3|ZNF791|ENSG00000173875.9|zinc finger protein 791
hg19_v2_chr15_+_64680003_64680063	0.086209	FOXA2_FOXJ3	ENST00000261884.3|TRIP4|ENSG00000103671.5|thyroid hormone receptor interactor 4
hg19_v2_chr11_+_71791359_71791387	0.0857061	FOXA2_FOXJ3	ENST00000419228.1|LRTOMT|ENSG00000184154.8|leucine rich transmembrane and O-methyltransferase domain containing 	ENST00000435085.1|LRTOMT|ENSG00000184154.8|leucine rich transmembrane and O-methyltransferase domain containing 	ENST00000307198.7|LRTOMT|ENSG00000184154.8|leucine rich transmembrane and O-methyltransferase domain containing 	ENST00000538413.1|LRTOMT|ENSG00000184154.8|leucine rich transmembrane and O-methyltransferase domain containing
hg19_v2_chr9_+_127054217_127054252	0.0853914	FOXA2_FOXJ3	ENST00000394199.2|NEK6|ENSG00000119408.12|NIMA-related kinase 6 	ENST00000546191.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6
hg19_v2_chr2_-_111334678_111334762	0.0849733	FOXA2_FOXJ3	ENST00000329516.3|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6 	ENST00000330331.5|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6 	ENST00000446930.1|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6
hg19_v2_chr2_+_114195268_114195340	0.0843128	FOXA2_FOXJ3	ENST00000259199.4|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000416503.2|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000433343.2|CBWD2|ENSG00000136682.10|COBW domain containing 2
hg19_v2_chr20_+_44035200_44035288	0.0837195	FOXA2_FOXJ3	ENST00000372717.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENST00000360981.4|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr10_+_124739964_124739994	0.0831982	FOXA2_FOXJ3	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr14_+_57671888_57671888	0.0830789	FOXA2_FOXJ3	ENST00000391612.1|AL391152.1|ENSG00000212928.1|AL391152.1
hg19_v2_chr12_+_99038919_99038954	0.0827586	FOXA2_FOXJ3	ENST00000551964.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr7_+_80275621_80275648	0.0826651	FOXA2_FOXJ3	ENST00000426978.1|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor) 	ENST00000432207.1|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor)
hg19_v2_chr17_-_3195876_3195876	0.0812011	FOXA2_FOXJ3	ENST00000323404.1|OR3A1|ENSG00000180090.3|olfactory receptor, family 3, subfamily A, member 1
hg19_v2_chr14_+_24439148_24439196	0.0810794	FOXA2_FOXJ3	ENST00000543805.1|DHRS4L2|ENSG00000187630.10|dehydrogenase/reductase (SDR family) member 4 like 2 	ENST00000534993.1|DHRS4L2|ENSG00000187630.10|dehydrogenase/reductase (SDR family) member 4 like 2
hg19_v2_chr7_+_80275752_80275779	0.0809397	FOXA2_FOXJ3	ENST00000419819.2|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor)
hg19_v2_chr6_-_42016385_42016706	0.0806839	FOXA2_FOXJ3	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr1_-_207095212_207095278	0.0805951	FOXA2_FOXJ3	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr19_+_782755_782833	0.0798424	FOXA2_FOXJ3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr3_+_174577070_174577136	0.0797154	FOXA2_FOXJ3	ENST00000454872.1|NAALADL2|ENSG00000177694.10|N-acetylated alpha-linked acidic dipeptidase-like 2
hg19_v2_chr13_-_53024725_53024809	0.079295	FOXA2_FOXJ3	ENST00000378060.4|VPS36|ENSG00000136100.8|vacuolar protein sorting 36 homolog (S. cerevisiae)
hg19_v2_chr1_+_144811943_144811943	0.0787991	FOXA2_FOXJ3	ENST00000281815.8|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9
hg19_v2_chr15_-_90892669_90892669	0.0785766	FOXA2_FOXJ3	ENST00000412799.2|GABARAPL3|ENSG00000238244.2|GABA(A) receptors associated protein like 3, pseudogene
hg19_v2_chr6_+_56911336_56911347	0.0783567	FOXA2_FOXJ3	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr20_+_48429356_48429458	0.0781171	FOXA2_FOXJ3	ENST00000361573.2|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 	ENST00000541138.1|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 	ENST00000539601.1|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8
hg19_v2_chr1_+_144811744_144811748	0.0779592	FOXA2_FOXJ3	ENST00000338347.4|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9 	ENST00000440491.2|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9 	ENST00000375552.4|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9
hg19_v2_chr13_+_98086445_98086493	0.0774099	FOXA2_FOXJ3	ENST00000245304.4|RAP2A|ENSG00000125249.6|RAP2A, member of RAS oncogene family
hg19_v2_chr6_+_140175987_140176056	0.0773215	FOXA2_FOXJ3	ENST00000414038.1|RP5-899B16.1|ENSG00000231426.1|RP5-899B16.1	ENST00000431609.1|RP5-899B16.1|ENSG00000231426.1|RP5-899B16.1
hg19_v2_chr19_-_18433910_18434084	0.0765748	FOXA2_FOXJ3	ENST00000594828.3|LSM4|ENSG00000130520.6|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000593829.1|LSM4|ENSG00000130520.6|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr15_-_83224682_83224682	0.0752199	FOXA2_FOXJ3	ENST00000562833.1|RP11-152F13.10|ENSG00000260836.1|RP11-152F13.10
hg19_v2_chr16_+_28763108_28763108	0.0752024	FOXA2_FOXJ3	ENST00000357796.3|NPIPB9|ENSG00000196993.4|nuclear pore complex interacting protein family, member B9 	ENST00000550983.1|NPIPB9|ENSG00000196993.4|nuclear pore complex interacting protein family, member B9
hg19_v2_chr14_+_58894141_58894155	0.0742014	FOXA2_FOXJ3	ENST00000423743.3|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr8_+_67344710_67344750	0.0736043	FOXA2_FOXJ3	ENST00000379385.4|ADHFE1|ENSG00000147576.11|alcohol dehydrogenase, iron containing, 1 	ENST00000396623.3|ADHFE1|ENSG00000147576.11|alcohol dehydrogenase, iron containing, 1 	ENST00000415254.1|ADHFE1|ENSG00000147576.11|alcohol dehydrogenase, iron containing, 1
hg19_v2_chr8_+_36641842_36641902	0.0733077	FOXA2_FOXJ3	ENST00000523973.1|KCNU1|ENSG00000215262.3|potassium channel, subfamily U, member 1 	ENST00000399881.3|KCNU1|ENSG00000215262.3|potassium channel, subfamily U, member 1
hg19_v2_chr7_+_151653464_151653513	0.072852	FOXA2_FOXJ3	ENST00000431418.2|GALNTL5|ENSG00000106648.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 	ENST00000392800.2|GALNTL5|ENSG00000106648.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
hg19_v2_chr3_-_48956818_48956818	0.0723569	FOXA2_FOXJ3	ENST00000408959.2|ARIH2OS|ENSG00000221883.2|ariadne homolog 2 opposite strand
hg19_v2_chr1_+_95616933_95616933	0.0722729	FOXA2_FOXJ3	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr19_-_50666431_50666455	0.0721058	FOXA2_FOXJ3	ENST00000293405.3|IZUMO2|ENSG00000161652.8|IZUMO family member 2
hg19_v2_chr17_-_29641084_29641103	0.0719263	FOXA2_FOXJ3	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr1_-_159684371_159684385	0.0716638	FOXA2_FOXJ3	ENST00000255030.5|CRP|ENSG00000132693.8|C-reactive protein, pentraxin-related 	ENST00000437342.1|CRP|ENSG00000132693.8|C-reactive protein, pentraxin-related 	ENST00000368112.1|CRP|ENSG00000132693.8|C-reactive protein, pentraxin-related 	ENST00000368111.1|CRP|ENSG00000132693.8|C-reactive protein, pentraxin-related 	ENST00000368110.1|CRP|ENSG00000132693.8|C-reactive protein, pentraxin-related 	ENST00000343919.2|CRP|ENSG00000132693.8|C-reactive protein, pentraxin-related
hg19_v2_chr10_+_78078088_78078092	0.0709135	FOXA2_FOXJ3	ENST00000496424.2|C10orf11|ENSG00000148655.10|chromosome 10 open reading frame 11
hg19_v2_chr12_-_10324716_10324742	0.0701215	FOXA2_FOXJ3	ENST00000545927.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000432556.2|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000309539.3|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000544577.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1
hg19_v2_chr17_-_6915646_6915673	0.0698574	FOXA2_FOXJ3	ENST00000574377.1|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000399541.2|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000399540.2|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000575727.1|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000573939.1|AC027763.2|ENSG00000215067.5|Uncharacterized protein
hg19_v2_chr12_+_99038998_99039078	0.0694458	FOXA2_FOXJ3	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr2_+_149402553_149402568	0.0692037	FOXA2_FOXJ3	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr1_+_18957500_18957623	0.0686454	FOXA2_FOXJ3	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr15_+_79166065_79166163	0.0682309	FOXA2_FOXJ3	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr10_-_69597915_69597926	0.0681845	FOXA2_FOXJ3	ENST00000225171.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr7_+_79998864_79998896	0.0681555	FOXA2_FOXJ3	ENST00000435819.1|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor)
hg19_v2_chr3_-_182703688_182703741	0.0676643	FOXA2_FOXJ3	ENST00000466812.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000487822.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000460412.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000469954.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr4_-_140005443_140005650	0.0672972	FOXA2_FOXJ3	ENST00000510408.1|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000420916.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000358635.3|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr19_-_50666404_50666424	0.0661296	FOXA2_FOXJ3	ENST00000600293.1|IZUMO2|ENSG00000161652.8|IZUMO family member 2
hg19_v2_chr7_-_14880892_14881075	0.0651945	FOXA2_FOXJ3	ENST00000406247.3|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa 	ENST00000399322.3|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa 	ENST00000258767.5|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr6_-_109330702_109330763	0.0651624	FOXA2_FOXJ3	ENST00000356644.7|SESN1|ENSG00000080546.9|sestrin 1
hg19_v2_chr17_-_64216748_64216865	0.064347	FOXA2_FOXJ3	ENST00000585162.1|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr7_+_80275953_80275969	0.0637639	FOXA2_FOXJ3	ENST00000538969.1|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor) 	ENST00000544133.1|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor) 	ENST00000433696.2|CD36|ENSG00000135218.13|CD36 molecule (thrombospondin receptor)
hg19_v2_chr1_+_198608146_198608247	0.0636834	FOXA2_FOXJ3	ENST00000367376.2|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000352140.3|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000594404.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000598951.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000530727.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000442510.2|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000367367.4|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000348564.6|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000367364.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000413409.2|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C
hg19_v2_chr1_+_15764931_15764945	0.0623217	FOXA2_FOXJ3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr1_-_120354079_120354283	0.0621021	FOXA2_FOXJ3	ENST00000354219.1|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000369401.4|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000256585.5|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4
hg19_v2_chr3_-_15382875_15382889	0.0620407	FOXA2_FOXJ3	ENST00000408919.3|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated)
hg19_v2_chr20_-_62582475_62582484	0.0619517	FOXA2_FOXJ3	ENST00000369908.5|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1
hg19_v2_chr8_-_93978357_93978379	0.0617186	FOXA2_FOXJ3	ENST00000522925.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000522903.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000537541.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000518748.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000519069.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000521988.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr12_-_50790267_50790405	0.0613379	FOXA2_FOXJ3	ENST00000327337.5|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A 	ENST00000543111.1|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A
hg19_v2_chr9_+_37422663_37422743	0.0611187	FOXA2_FOXJ3	ENST00000318158.6|GRHPR|ENSG00000137106.13|glyoxylate reductase/hydroxypyruvate reductase 	ENST00000607784.1|GRHPR|ENSG00000137106.13|glyoxylate reductase/hydroxypyruvate reductase
hg19_v2_chr5_-_60240858_60240905	0.0610445	FOXA2_FOXJ3	ENST00000426742.2|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000265038.5|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000543101.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000439176.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8
hg19_v2_chr7_-_33140498_33140517	0.0609925	FOXA2_FOXJ3	ENST00000448915.1|RP9|ENSG00000164610.4|retinitis pigmentosa 9 (autosomal dominant)
hg19_v2_chr7_+_106505696_106505798	0.0609408	FOXA2_FOXJ3	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr2_-_113191096_113191222	0.0604797	FOXA2_FOXJ3	ENST00000496537.1|RGPD8|ENSG00000169629.7|RANBP2-like and GRIP domain containing 8 	ENST00000330575.5|RGPD8|ENSG00000169629.7|RANBP2-like and GRIP domain containing 8 	ENST00000302558.3|RGPD8|ENSG00000169629.7|RANBP2-like and GRIP domain containing 8
hg19_v2_chr6_+_29424958_29424965	0.0604066	FOXA2_FOXJ3	ENST00000377136.1|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1 	ENST00000377133.1|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr1_-_43855444_43855478	0.0599339	FOXA2_FOXJ3	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr2_+_201170770_201170882	0.0598576	FOXA2_FOXJ3	ENST00000409988.3|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409385.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr1_+_24018269_24018274	0.0597817	FOXA2_FOXJ3	ENST00000374550.3|RPL11|ENSG00000142676.8|ribosomal protein L11
hg19_v2_chr2_-_27886460_27886511	0.0587842	FOXA2_FOXJ3	ENST00000404798.2|SUPT7L|ENSG00000119760.11|suppressor of Ty 7 (S. cerevisiae)-like 	ENST00000405491.1|SUPT7L|ENSG00000119760.11|suppressor of Ty 7 (S. cerevisiae)-like 	ENST00000464789.2|SUPT7L|ENSG00000119760.11|suppressor of Ty 7 (S. cerevisiae)-like 	ENST00000406540.1|SUPT7L|ENSG00000119760.11|suppressor of Ty 7 (S. cerevisiae)-like
hg19_v2_chrX_+_40440146_40440268	0.0582522	FOXA2_FOXJ3	ENST00000535539.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000378438.4|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000436783.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000544975.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000535777.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000447485.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000423649.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2
hg19_v2_chr13_-_38443860_38443939	0.0582026	FOXA2_FOXJ3	ENST00000426868.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379681.3|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000338947.5|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000355779.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000358477.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379673.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4
hg19_v2_chr19_+_36024310_36024329	0.0581722	FOXA2_FOXJ3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr1_+_43855560_43855640	0.0575301	FOXA2_FOXJ3	ENST00000562955.1|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr19_-_47157914_47157980	0.0570946	FOXA2_FOXJ3	ENST00000300875.4|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr3_+_50712672_50712703	0.056188	FOXA2_FOXJ3	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr12_+_54378923_54378970	0.0557578	FOXA2_FOXJ3	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr4_+_118955500_118955612	0.0556422	FOXA2_FOXJ3	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr2_+_201170596_201170619	0.0545208	FOXA2_FOXJ3	ENST00000439084.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409718.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr13_-_103451307_103451380	0.0540317	FOXA2_FOXJ3	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr1_+_145883868_145883868	0.053721	FOXA2_FOXJ3	ENST00000447947.2|GPR89C|ENSG00000196644.8|G protein-coupled receptor 89C
hg19_v2_chr1_-_102312517_102312566	0.0536211	FOXA2_FOXJ3	ENST00000338858.5|OLFM3|ENSG00000118733.12|olfactomedin 3
hg19_v2_chr3_+_101292939_101293063	0.0529426	FOXA2_FOXJ3	ENST00000265260.3|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000469941.1|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000296024.5|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein
hg19_v2_chr11_+_102217936_102218035	0.0525484	FOXA2_FOXJ3	ENST00000532832.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000530675.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000533742.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000227758.2|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000532672.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000531259.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000527465.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2
hg19_v2_chr3_+_107096188_107096236	0.0519104	FOXA2_FOXJ3	ENST00000261058.1|CCDC54|ENSG00000138483.1|coiled-coil domain containing 54
hg19_v2_chr2_+_143635067_143635211	0.0515866	FOXA2_FOXJ3	ENST00000264170.4|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr8_-_93978309_93978331	0.0511443	FOXA2_FOXJ3	ENST00000517858.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000378861.5|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr3_+_108541608_108541624	0.0507968	FOXA2_FOXJ3	ENST00000426646.1|TRAT1|ENSG00000163519.9|T cell receptor associated transmembrane adaptor 1
hg19_v2_chr1_+_224370873_224370968	0.0506668	FOXA2_FOXJ3	ENST00000323699.4|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1 	ENST00000391877.3|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1
hg19_v2_chr13_-_36920420_36920574	0.0504225	FOXA2_FOXJ3	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr8_-_93978333_93978345	0.0503332	FOXA2_FOXJ3	ENST00000524037.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000520430.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000521617.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr1_-_177939348_177939395	0.0495493	FOXA2_FOXJ3	ENST00000464631.2|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr8_-_93978346_93978355	0.0491708	FOXA2_FOXJ3	ENST00000523580.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr6_-_13621126_13621126	0.0488218	FOXA2_FOXJ3	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr1_-_3566590_3566622	0.0480157	FOXA2_FOXJ3	ENST00000424367.1|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000378322.3|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr12_+_21525818_21525862	0.0475949	FOXA2_FOXJ3	ENST00000240652.3|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000542023.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000537593.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide
hg19_v2_chr14_+_50234827_50234886	0.0474617	FOXA2_FOXJ3	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr16_-_21877629_21877629	0.0470776	FOXA2_FOXJ3	ENST00000544693.1|NPIPB4|ENSG00000185864.12|nuclear pore complex interacting protein family, member B4
hg19_v2_chr14_+_58894103_58894124	0.0470359	FOXA2_FOXJ3	ENST00000354386.6|KIAA0586|ENSG00000100578.10|KIAA0586 	ENST00000556134.1|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr4_-_140223670_140223705	0.0468539	FOXA2_FOXJ3	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr15_+_56657613_56657651	0.0468225	FOXA2_FOXJ3	ENST00000352903.2|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000537232.1|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000561221.2|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000558083.2|TEX9|ENSG00000151575.10|testis expressed 9
hg19_v2_chr19_+_55417499_55417521	0.0465602	FOXA2_FOXJ3	ENST00000291890.4|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1 	ENST00000447255.1|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1 	ENST00000598576.1|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1 	ENST00000594765.1|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1
hg19_v2_chr20_+_54823788_54823788	0.0464506	FOXA2_FOXJ3	ENST00000243911.2|MC3R|ENSG00000124089.4|melanocortin 3 receptor
hg19_v2_chr16_-_279405_279462	0.0453865	FOXA2_FOXJ3	ENST00000430864.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000293872.8|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000337351.4|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000397783.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae)
hg19_v2_chr5_+_161275320_161275450	0.0451545	FOXA2_FOXJ3	ENST00000437025.2|GABRA1|ENSG00000022355.10|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v2_chr1_+_247670415_247670426	0.0448427	FOXA2_FOXJ3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr18_-_48351743_48351772	0.0444883	FOXA2_FOXJ3	ENST00000588444.1|MRO|ENSG00000134042.8|maestro 	ENST00000256425.2|MRO|ENSG00000134042.8|maestro 	ENST00000428869.2|MRO|ENSG00000134042.8|maestro
hg19_v2_chr5_-_218251_218330	0.044466	FOXA2_FOXJ3	ENST00000296824.3|CCDC127|ENSG00000164366.3|coiled-coil domain containing 127
hg19_v2_chr2_+_68592305_68592405	0.044263	FOXA2_FOXJ3	ENST00000234313.7|PLEK|ENSG00000115956.9|pleckstrin
hg19_v2_chr21_+_30968360_30968360	0.0442142	FOXA2_FOXJ3	ENST00000333765.4|GRIK1-AS2|ENSG00000183653.4|GRIK1 antisense RNA 2
hg19_v2_chr5_-_13944652_13944652	0.043854	FOXA2_FOXJ3	ENST00000265104.4|DNAH5|ENSG00000039139.9|dynein, axonemal, heavy chain 5
hg19_v2_chr1_-_203274418_203274461	0.0436506	FOXA2_FOXJ3	ENST00000457348.1|RP11-134P9.1|ENSG00000233791.1|long intergenic non-protein coding RNA 1136
hg19_v2_chr7_-_72972319_72972347	0.0435925	FOXA2_FOXJ3	ENST00000223368.2|BCL7B|ENSG00000106635.3|B-cell CLL/lymphoma 7B
hg19_v2_chr15_+_71185148_71185214	0.0428965	FOXA2_FOXJ3	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr16_-_67597789_67597861	0.0426084	FOXA2_FOXJ3	ENST00000605277.1|CTD-2012K14.6|ENSG00000261386.2|CTD-2012K14.6
hg19_v2_chr3_-_169587621_169587728	0.0425001	FOXA2_FOXJ3	ENST00000523069.1|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31 	ENST00000316428.5|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31 	ENST00000264676.5|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31
hg19_v2_chr19_-_40030861_40030873	0.0422213	FOXA2_FOXJ3	ENST00000390658.2|EID2|ENSG00000176396.9|EP300 interacting inhibitor of differentiation 2
hg19_v2_chr4_-_100212132_100212185	0.0420006	FOXA2_FOXJ3	ENST00000209668.2|ADH1A|ENSG00000187758.3|alcohol dehydrogenase 1A (class I), alpha polypeptide
hg19_v2_chr5_+_101569696_101569696	0.0417845	FOXA2_FOXJ3	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr17_+_79953310_79953319	0.0417479	FOXA2_FOXJ3	ENST00000582355.2|ASPSCR1|ENSG00000169696.11|alveolar soft part sarcoma chromosome region, candidate 1
hg19_v2_chr12_-_122107549_122107572	0.0415646	FOXA2_FOXJ3	ENST00000355329.3|MORN3|ENSG00000139714.8|MORN repeat containing 3
hg19_v2_chr19_-_36523529_36523573	0.0414095	FOXA2_FOXJ3	ENST00000593074.1|CLIP3|ENSG00000105270.10|CAP-GLY domain containing linker protein 3
hg19_v2_chr12_+_53836339_53836474	0.0411342	FOXA2_FOXJ3	ENST00000549135.1|PRR13|ENSG00000205352.6|proline rich 13
hg19_v2_chr19_-_4400415_4400570	0.0410411	FOXA2_FOXJ3	ENST00000598564.1|SH3GL1|ENSG00000141985.5|SH3-domain GRB2-like 1 	ENST00000417295.2|SH3GL1|ENSG00000141985.5|SH3-domain GRB2-like 1 	ENST00000269886.3|SH3GL1|ENSG00000141985.5|SH3-domain GRB2-like 1
hg19_v2_chr6_-_131291572_131291623	0.0408167	FOXA2_FOXJ3	ENST00000529208.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr3_+_108541545_108541569	0.0402854	FOXA2_FOXJ3	ENST00000295756.6|TRAT1|ENSG00000163519.9|T cell receptor associated transmembrane adaptor 1
hg19_v2_chr20_+_43990576_43990596	0.0398866	FOXA2_FOXJ3	ENST00000372727.1|SYS1|ENSG00000204070.5|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) 	ENST00000414310.1|SYS1|ENSG00000204070.5|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
hg19_v2_chr5_-_10308125_10308142	0.039711	FOXA2_FOXJ3	ENST00000296658.3|CMBL|ENSG00000164237.4|carboxymethylenebutenolidase homolog (Pseudomonas)
hg19_v2_chr12_-_51718436_51718458	0.0393265	FOXA2_FOXJ3	ENST00000544402.1|BIN2|ENSG00000110934.6|bridging integrator 2
hg19_v2_chr2_-_191878681_191878823	0.0389956	FOXA2_FOXJ3	ENST00000409465.1|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa
hg19_v2_chr5_+_94727048_94727074	0.0389615	FOXA2_FOXJ3	ENST00000283357.5|FAM81B|ENSG00000153347.5|family with sequence similarity 81, member B
hg19_v2_chrX_+_77154935_77155012	0.0386275	FOXA2_FOXJ3	ENST00000481445.1|COX7B|ENSG00000131174.4|cytochrome c oxidase subunit VIIb
hg19_v2_chr16_-_28374829_28374829	0.0383801	FOXA2_FOXJ3	ENST00000532254.1|NPIPB6|ENSG00000198156.6|nuclear pore complex interacting protein family, member B6
hg19_v2_chr1_+_43855545_43855557	0.0374832	FOXA2_FOXJ3	ENST00000372450.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse) 	ENST00000310739.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr20_-_43150601_43150751	0.0370371	FOXA2_FOXJ3	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr14_-_106573756_106573800	0.0369661	FOXA2_FOXJ3	ENST00000390601.2|IGHV3-11|ENSG00000211941.2|immunoglobulin heavy variable 3-11 (gene/pseudogene)
hg19_v2_chr12_+_57998400_57998422	0.0368525	FOXA2_FOXJ3	ENST00000548804.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000550596.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000551835.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000549583.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila)
hg19_v2_chr10_-_50396407_50396424	0.0368127	FOXA2_FOXJ3	ENST00000374153.2|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128 	ENST00000374151.3|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128
hg19_v2_chr2_+_170440844_170440897	0.0364292	FOXA2_FOXJ3	ENST00000260970.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000433207.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000409714.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000462903.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G)
hg19_v2_chr3_-_107941209_107941227	0.0363651	FOXA2_FOXJ3	ENST00000492106.1|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr7_+_106505912_106505931	0.0356596	FOXA2_FOXJ3	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr15_-_74658493_74658504	0.0355442	FOXA2_FOXJ3	ENST00000419019.2|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000569662.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr12_-_71512027_71512027	0.035535	FOXA2_FOXJ3	ENST00000549357.1|CTD-2021H9.3|ENSG00000258053.1|Uncharacterized protein
hg19_v2_chr8_+_105352050_105352056	0.0354362	FOXA2_FOXJ3	ENST00000297581.2|DCSTAMP|ENSG00000164935.2|dendrocyte expressed seven transmembrane protein
hg19_v2_chr22_-_39268308_39268319	0.0347051	FOXA2_FOXJ3	ENST00000407418.3|CBX6|ENSG00000183741.7|chromobox homolog 6
hg19_v2_chr4_-_70518941_70518967	0.0345356	FOXA2_FOXJ3	ENST00000286604.4|UGT2A1|ENSG00000173610.7|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus 	ENST00000505512.1|UGT2A1|ENSG00000173610.7|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus 	ENST00000514019.1|UGT2A1|ENSG00000270386.1|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus
hg19_v2_chr17_+_16284604_16284661	0.0342562	FOXA2_FOXJ3	ENST00000395839.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000395837.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr7_+_99425633_99425739	0.034049	FOXA2_FOXJ3	ENST00000354829.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000421837.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000417625.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000342499.4|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000444905.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000415413.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000312017.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000222382.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43
hg19_v2_chr19_+_3880581_3880692	0.0339949	FOXA2_FOXJ3	ENST00000450849.2|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000301260.6|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000398448.3|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type
hg19_v2_chr11_+_122709200_122709215	0.033703	FOXA2_FOXJ3	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chr13_+_78315295_78315337	0.0337022	FOXA2_FOXJ3	ENST00000351546.3|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr5_-_59064458_59064511	0.0335074	FOXA2_FOXJ3	ENST00000502575.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000507116.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr7_-_107443652_107443675	0.0334046	FOXA2_FOXJ3	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr17_+_77030267_77030391	0.0332546	FOXA2_FOXJ3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr20_-_1165117_1165117	0.0331484	FOXA2_FOXJ3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr4_+_86748898_86748936	0.0328497	FOXA2_FOXJ3	ENST00000509300.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr6_-_114194483_114194525	0.0319708	FOXA2_FOXJ3	ENST00000434296.2|RP1-249H1.4|ENSG00000227502.2|RP1-249H1.4
hg19_v2_chr12_+_72080253_72080293	0.0317571	FOXA2_FOXJ3	ENST00000549735.1|TMEM19|ENSG00000139291.9|transmembrane protein 19
hg19_v2_chr14_+_57046530_57046602	0.0317367	FOXA2_FOXJ3	ENST00000536419.1|TMEM260|ENSG00000070269.9|transmembrane protein 260 	ENST00000538838.1|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr3_-_71179988_71180085	0.0314328	FOXA2_FOXJ3	ENST00000491238.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr2_-_201729393_201729428	0.0311422	FOXA2_FOXJ3	ENST00000321356.4|CLK1|ENSG00000013441.11|CDC-like kinase 1
hg19_v2_chr2_+_201171064_201171099	0.0298023	FOXA2_FOXJ3	ENST00000451764.2|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr5_+_140044261_140044464	0.0292993	FOXA2_FOXJ3	ENST00000358337.5|WDR55|ENSG00000120314.14|WD repeat domain 55
hg19_v2_chr12_+_27175476_27175518	0.0288735	FOXA2_FOXJ3	ENST00000546323.1|MED21|ENSG00000152944.4|mediator complex subunit 21 	ENST00000282892.3|MED21|ENSG00000152944.4|mediator complex subunit 21
hg19_v2_chr12_-_68696652_68696661	0.0287202	FOXA2_FOXJ3	ENST00000539972.1|MDM1|ENSG00000111554.10|Mdm1 nuclear protein homolog (mouse)
hg19_v2_chr4_-_23735183_23735202	0.0280804	FOXA2_FOXJ3	ENST00000507666.1|RP11-380P13.2|ENSG00000251292.1|RP11-380P13.2
hg19_v2_chr16_-_30265831_30265831	0.0280125	FOXA2_FOXJ3	ENST00000568053.1|RP11-347C12.1|ENSG00000198064.9|Putative NPIP-like protein LOC613037
hg19_v2_chr1_+_3607228_3607250	0.0278731	FOXA2_FOXJ3	ENST00000378285.1|TP73|ENSG00000078900.10|tumor protein p73 	ENST00000378280.1|TP73|ENSG00000078900.10|tumor protein p73 	ENST00000378288.4|TP73|ENSG00000078900.10|tumor protein p73
hg19_v2_chr2_-_191878874_191878976	0.0273492	FOXA2_FOXJ3	ENST00000392322.3|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa 	ENST00000392323.2|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa 	ENST00000424722.1|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa 	ENST00000361099.3|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa
hg19_v2_chr9_+_80850952_80851267	0.0259362	FOXA2_FOXJ3	ENST00000424347.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000415759.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000376597.4|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000277082.5|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000376598.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa
hg19_v2_chr17_+_42148225_42148317	0.0254809	FOXA2_FOXJ3	ENST00000591696.1|G6PC3|ENSG00000141349.4|glucose 6 phosphatase, catalytic, 3
hg19_v2_chr15_-_43559055_43559131	0.025108	FOXA2_FOXJ3	ENST00000220420.5|TGM5|ENSG00000104055.10|transglutaminase 5 	ENST00000349114.4|TGM5|ENSG00000104055.10|transglutaminase 5
hg19_v2_chr16_+_24857162_24857302	0.0250952	FOXA2_FOXJ3	ENST00000347898.3|SLC5A11|ENSG00000158865.8|solute carrier family 5 (sodium/inositol cotransporter), member 11
hg19_v2_chr2_-_201729284_201729359	0.0250892	FOXA2_FOXJ3	ENST00000434813.2|CLK1|ENSG00000013441.11|CDC-like kinase 1
hg19_v2_chr9_+_136287444_136287514	0.0250685	FOXA2_FOXJ3	ENST00000355699.2|ADAMTS13|ENSG00000160323.14|ADAM metallopeptidase with thrombospondin type 1 motif, 13 	ENST00000356589.2|ADAMTS13|ENSG00000160323.14|ADAM metallopeptidase with thrombospondin type 1 motif, 13 	ENST00000371911.3|ADAMTS13|ENSG00000160323.14|ADAM metallopeptidase with thrombospondin type 1 motif, 13
hg19_v2_chr10_-_69597810_69597827	0.024644	FOXA2_FOXJ3	ENST00000483798.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr5_+_96212185_96212210	0.0245794	FOXA2_FOXJ3	ENST00000379904.4|ERAP2|ENSG00000164308.12|endoplasmic reticulum aminopeptidase 2
hg19_v2_chr16_-_745946_746025	0.0245469	FOXA2_FOXJ3	ENST00000562563.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr12_+_54892550_54892591	0.0240904	FOXA2_FOXJ3	ENST00000545638.2|NCKAP1L|ENSG00000123338.8|NCK-associated protein 1-like
hg19_v2_chr11_+_65101225_65101359	0.0240644	FOXA2_FOXJ3	ENST00000528416.1|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2 	ENST00000415073.2|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2 	ENST00000252268.4|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2
hg19_v2_chr3_-_183145765_183145813	0.0238245	FOXA2_FOXJ3	ENST00000473233.1|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2
hg19_v2_chr7_+_12250886_12250933	0.0237936	FOXA2_FOXJ3	ENST00000444443.1|TMEM106B|ENSG00000106460.14|transmembrane protein 106B 	ENST00000396667.3|TMEM106B|ENSG00000106460.14|transmembrane protein 106B
hg19_v2_chr10_-_103578162_103578175	0.02374	FOXA2_FOXJ3	ENST00000361464.3|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase) 	ENST00000357797.5|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase) 	ENST00000370094.3|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase)
hg19_v2_chrX_-_65259914_65259967	0.0234012	FOXA2_FOXJ3	ENST00000374737.4|VSIG4|ENSG00000155659.10|V-set and immunoglobulin domain containing 4 	ENST00000455586.2|VSIG4|ENSG00000155659.10|V-set and immunoglobulin domain containing 4
hg19_v2_chr12_-_54582655_54582780	0.0234004	FOXA2_FOXJ3	ENST00000504338.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514685.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000504797.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000513838.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000505128.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000337581.3|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000503306.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000243112.5|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514196.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000506169.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000507904.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000508394.2|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1
hg19_v2_chrX_-_77150985_77151090	0.0230383	FOXA2_FOXJ3	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr16_-_88772670_88772702	0.0228886	FOXA2_FOXJ3	ENST00000562544.1|RNF166|ENSG00000158717.6|ring finger protein 166
hg19_v2_chr16_+_22516172_22516172	0.0228397	FOXA2_FOXJ3	ENST00000543407.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr3_-_183145873_183146063	0.0227523	FOXA2_FOXJ3	ENST00000447025.2|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2 	ENST00000414362.2|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2 	ENST00000328913.3|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2
hg19_v2_chr1_+_241695670_241695705	0.0223304	FOXA2_FOXJ3	ENST00000366557.4|KMO|ENSG00000117009.7|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
hg19_v2_chr12_+_2986359_2986421	0.0223179	FOXA2_FOXJ3	ENST00000538636.1|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000461997.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000489288.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000366285.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000538700.1|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1
hg19_v2_chr19_+_55417530_55417546	0.0219324	FOXA2_FOXJ3	ENST00000350790.5|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1 	ENST00000338835.5|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1 	ENST00000357397.5|NCR1|ENSG00000189430.8|natural cytotoxicity triggering receptor 1
hg19_v2_chr7_-_76829125_76829143	0.0217188	FOXA2_FOXJ3	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr22_-_38699003_38699017	0.0215597	FOXA2_FOXJ3	ENST00000451964.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr7_-_23571586_23571660	0.0208984	FOXA2_FOXJ3	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chr15_-_74658519_74658558	0.0208386	FOXA2_FOXJ3	ENST00000450547.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000358632.4|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr5_+_153418466_153418565	0.0205069	FOXA2_FOXJ3	ENST00000522782.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000439768.2|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000436816.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000322602.5|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000522177.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000520899.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3
hg19_v2_chr1_-_151345159_151345209	0.0204488	FOXA2_FOXJ3	ENST00000458566.1|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000447402.3|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000426705.2|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000435071.1|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000368868.5|SELENBP1|ENSG00000143416.16|selenium binding protein 1
hg19_v2_chr8_+_87878640_87878673	0.0203601	FOXA2_FOXJ3	ENST00000518476.1|CNBD1|ENSG00000176571.7|cyclic nucleotide binding domain containing 1
hg19_v2_chr16_-_24942411_24942481	0.0202886	FOXA2_FOXJ3	ENST00000571843.1|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chrX_-_65259900_65259909	0.0200605	FOXA2_FOXJ3	ENST00000412866.2|VSIG4|ENSG00000155659.10|V-set and immunoglobulin domain containing 4
hg19_v2_chr17_-_685493_685548	0.0187871	FOXA2_FOXJ3	ENST00000536578.1|GLOD4|ENSG00000167699.9|glyoxalase domain containing 4 	ENST00000301328.5|GLOD4|ENSG00000167699.9|glyoxalase domain containing 4 	ENST00000576419.1|GLOD4|ENSG00000167699.9|glyoxalase domain containing 4
hg19_v2_chr11_+_60260248_60260273	0.0184198	FOXA2_FOXJ3	ENST00000526784.1|MS4A12|ENSG00000071203.5|membrane-spanning 4-domains, subfamily A, member 12 	ENST00000016913.4|MS4A12|ENSG00000071203.5|membrane-spanning 4-domains, subfamily A, member 12 	ENST00000537076.1|MS4A12|ENSG00000071203.5|membrane-spanning 4-domains, subfamily A, member 12 	ENST00000530007.1|MS4A12|ENSG00000071203.5|membrane-spanning 4-domains, subfamily A, member 12
hg19_v2_chr17_-_57229155_57229198	0.0182673	FOXA2_FOXJ3	ENST00000584089.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr5_+_140552218_140552244	0.0180678	FOXA2_FOXJ3	ENST00000231137.3|PCDHB7|ENSG00000113212.4|protocadherin beta 7
hg19_v2_chr11_-_121986923_121986923	0.0179522	FOXA2_FOXJ3	ENST00000560104.1|BLID|ENSG00000259571.1|BH3-like motif containing, cell death inducer
hg19_v2_chr22_+_24407642_24407770	0.0177594	FOXA2_FOXJ3	ENST00000454754.1|CABIN1|ENSG00000099991.12|calcineurin binding protein 1 	ENST00000263119.5|CABIN1|ENSG00000099991.12|calcineurin binding protein 1
hg19_v2_chr13_+_52598827_52598827	0.0175014	FOXA2_FOXJ3	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr15_+_90792760_90792767	0.0174259	FOXA2_FOXJ3	ENST00000339615.5|TTLL13|ENSG00000213471.4|tubulin tyrosine ligase-like family, member 13 	ENST00000438251.1|TTLL13|ENSG00000213471.4|tubulin tyrosine ligase-like family, member 13
hg19_v2_chr20_+_36373032_36373047	0.0174051	FOXA2_FOXJ3	ENST00000373473.1|CTNNBL1|ENSG00000132792.14|catenin, beta like 1
hg19_v2_chr10_+_111967345_111967442	0.0173884	FOXA2_FOXJ3	ENST00000332674.5|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein 	ENST00000453116.1|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chr17_-_72772462_72772511	0.0168751	FOXA2_FOXJ3	ENST00000582870.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000581136.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000357814.3|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000579218.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583476.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000580301.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583757.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000582524.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative)
hg19_v2_chr14_+_102276132_102276178	0.0167421	FOXA2_FOXJ3	ENST00000350249.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557621.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556946.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr18_-_24765248_24765281	0.0166819	FOXA2_FOXJ3	ENST00000580774.1|CHST9|ENSG00000154080.8|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 	ENST00000284224.8|CHST9|ENSG00000154080.8|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
hg19_v2_chr19_+_36486078_36486123	0.0163667	FOXA2_FOXJ3	ENST00000378887.2|SDHAF1|ENSG00000205138.2|succinate dehydrogenase complex assembly factor 1
hg19_v2_chr1_+_150488205_150488251	0.0163335	FOXA2_FOXJ3	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr6_-_80247140_80247175	0.0162955	FOXA2_FOXJ3	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr16_-_30621663_30621718	0.0156744	FOXA2_FOXJ3	ENST00000287461.3|ZNF689|ENSG00000156853.7|zinc finger protein 689
hg19_v2_chr2_-_46844159_46844209	0.0155462	FOXA2_FOXJ3	ENST00000474980.1|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F 	ENST00000306465.4|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr1_-_28559502_28559570	0.015501	FOXA2_FOXJ3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr13_-_79980315_79980403	0.0149384	FOXA2_FOXJ3	ENST00000438737.2|RBM26|ENSG00000139746.11|RNA binding motif protein 26
hg19_v2_chr1_-_100643765_100643829	0.0148454	FOXA2_FOXJ3	ENST00000370137.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000370138.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000342895.3|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39
hg19_v2_chrX_+_15767971_15768093	0.0147938	FOXA2_FOXJ3	ENST00000479740.1|CA5B|ENSG00000169239.8|carbonic anhydrase VB, mitochondrial 	ENST00000454127.2|CA5B|ENSG00000169239.8|carbonic anhydrase VB, mitochondrial
hg19_v2_chr6_+_152130240_152130274	0.0146185	FOXA2_FOXJ3	ENST00000427531.2|ESR1|ENSG00000091831.17|estrogen receptor 1
hg19_v2_chr3_+_136649311_136649360	0.0145902	FOXA2_FOXJ3	ENST00000469404.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1 	ENST00000467911.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1
hg19_v2_chr11_+_22696314_22696332	0.0144636	FOXA2_FOXJ3	ENST00000532398.1|GAS2|ENSG00000148935.6|growth arrest-specific 2 	ENST00000433790.1|GAS2|ENSG00000148935.6|growth arrest-specific 2
hg19_v2_chr1_-_213188772_213188856	0.0139459	FOXA2_FOXJ3	ENST00000544555.1|ANGEL2|ENSG00000174606.8|angel homolog 2 (Drosophila)
hg19_v2_chr8_+_39442097_39442142	0.0138677	FOXA2_FOXJ3	ENST00000265707.5|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18 	ENST00000379866.1|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18 	ENST00000520772.1|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18 	ENST00000541111.1|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18
hg19_v2_chr1_-_1310870_1310920	0.0137134	FOXA2_FOXJ3	ENST00000338338.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr3_-_187009798_187009812	0.0136744	FOXA2_FOXJ3	ENST00000337774.5|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
hg19_v2_chr17_+_67410832_67410871	0.0136312	FOXA2_FOXJ3	ENST00000590474.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr5_+_70751442_70751456	0.0136211	FOXA2_FOXJ3	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr20_+_36322408_36322516	0.0134554	FOXA2_FOXJ3	ENST00000361383.6|CTNNBL1|ENSG00000132792.14|catenin, beta like 1 	ENST00000447935.1|CTNNBL1|ENSG00000132792.14|catenin, beta like 1 	ENST00000405275.2|CTNNBL1|ENSG00000132792.14|catenin, beta like 1
hg19_v2_chr4_+_158142750_158142836	0.0134521	FOXA2_FOXJ3	ENST00000505888.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000449365.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr16_+_27078219_27078229	0.013379	FOXA2_FOXJ3	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr1_+_33439268_33439268	0.0132864	FOXA2_FOXJ3	ENST00000594612.1|FKSG48|ENSG00000267885.1|FKSG48
hg19_v2_chr5_+_32531893_32531930	0.0131212	FOXA2_FOXJ3	ENST00000512913.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae)
hg19_v2_chr1_+_203830703_203830743	0.013116	FOXA2_FOXJ3	ENST00000414487.2|SNRPE|ENSG00000182004.8|small nuclear ribonucleoprotein polypeptide E
hg19_v2_chrX_+_26156460_26156460	0.0129773	FOXA2_FOXJ3	ENST00000325250.1|MAGEB18|ENSG00000176774.5|melanoma antigen family B, 18
hg19_v2_chr1_-_1342617_1342693	0.0129053	FOXA2_FOXJ3	ENST00000482352.1|MRPL20|ENSG00000242485.1|mitochondrial ribosomal protein L20 	ENST00000344843.7|MRPL20|ENSG00000242485.1|mitochondrial ribosomal protein L20
hg19_v2_chr11_+_2405833_2405893	0.0128657	FOXA2_FOXJ3	ENST00000527343.1|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000464784.2|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr3_+_128968437_128968505	0.0128405	FOXA2_FOXJ3	ENST00000314797.6|COPG1|ENSG00000181789.10|coatomer protein complex, subunit gamma 1
hg19_v2_chr2_-_46844242_46844258	0.0127455	FOXA2_FOXJ3	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr5_+_71616188_71616230	0.0127451	FOXA2_FOXJ3	ENST00000380639.5|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000543322.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000503868.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000510676.2|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000536805.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2
hg19_v2_chr17_-_36831156_36831187	0.0123499	FOXA2_FOXJ3	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr9_-_110540419_110540419	0.0122266	FOXA2_FOXJ3	ENST00000398726.3|AL162389.1|ENSG00000214645.3|Uncharacterized protein
hg19_v2_chr2_+_143635222_143635240	0.0122133	FOXA2_FOXJ3	ENST00000375773.2|KYNU|ENSG00000115919.10|kynureninase 	ENST00000409512.1|KYNU|ENSG00000115919.10|kynureninase 	ENST00000410015.2|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr12_-_96390063_96390076	0.0115358	FOXA2_FOXJ3	ENST00000541929.1|HAL|ENSG00000084110.6|histidine ammonia-lyase
hg19_v2_chr3_-_48647470_48647470	0.0113367	FOXA2_FOXJ3	ENST00000203407.5|UQCRC1|ENSG00000010256.6|ubiquinol-cytochrome c reductase core protein I
hg19_v2_chr3_+_39448180_39448226	0.0109936	FOXA2_FOXJ3	ENST00000301821.6|RPSA|ENSG00000168028.9|ribosomal protein SA 	ENST00000458478.1|RPSA|ENSG00000168028.9|ribosomal protein SA 	ENST00000443003.1|RPSA|ENSG00000168028.9|ribosomal protein SA
hg19_v2_chr1_+_149858461_149858525	0.0108941	FOXA2_FOXJ3	ENST00000331380.2|HIST2H2AC|ENSG00000184260.4|histone cluster 2, H2ac
hg19_v2_chr2_+_219646462_219646498	0.0107588	FOXA2_FOXJ3	ENST00000258415.4|CYP27A1|ENSG00000135929.4|cytochrome P450, family 27, subfamily A, polypeptide 1
hg19_v2_chr9_+_131683174_131683282	0.0104423	FOXA2_FOXJ3	ENST00000372592.3|PHYHD1|ENSG00000175287.14|phytanoyl-CoA dioxygenase domain containing 1 	ENST00000428610.1|PHYHD1|ENSG00000175287.14|phytanoyl-CoA dioxygenase domain containing 1
hg19_v2_chr11_+_67374323_67374437	0.0101086	FOXA2_FOXJ3	ENST00000322776.6|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000532303.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000532244.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000528328.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000529927.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000532343.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000415352.2|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000533075.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000529867.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000530638.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa
hg19_v2_chr16_+_28565230_28565257	0.00981773	FOXA2_FOXJ3	ENST00000317058.3|CCDC101|ENSG00000176476.4|coiled-coil domain containing 101
hg19_v2_chr9_+_127962795_127962834	0.00973427	FOXA2_FOXJ3	ENST00000394125.4|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs 	ENST00000259460.8|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs 	ENST00000373544.1|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs
hg19_v2_chr19_+_52839490_52839508	0.00965721	FOXA2_FOXJ3	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr15_+_42697018_42697035	0.00930049	FOXA2_FOXJ3	ENST00000397204.4|CAPN3|ENSG00000092529.18|calpain 3, (p94)
hg19_v2_chr12_+_107078474_107078533	0.00910982	FOXA2_FOXJ3	ENST00000552866.1|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression) 	ENST00000229387.5|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr19_+_52839515_52839572	0.00893141	FOXA2_FOXJ3	ENST00000403906.3|ZNF610|ENSG00000167554.10|zinc finger protein 610 	ENST00000601151.1|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr3_-_108836977_108836989	0.00875004	FOXA2_FOXJ3	ENST00000232603.5|MORC1|ENSG00000114487.5|MORC family CW-type zinc finger 1
hg19_v2_chr6_-_159240415_159240444	0.00837765	FOXA2_FOXJ3	ENST00000367075.3|EZR|ENSG00000092820.13|ezrin
hg19_v2_chr17_+_7487146_7487211	0.00830129	FOXA2_FOXJ3	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr15_+_57998923_57998934	0.00805875	FOXA2_FOXJ3	ENST00000380557.4|POLR2M|ENSG00000255529.3|polymerase (RNA) II (DNA directed) polypeptide M
hg19_v2_chr6_-_80247105_80247133	0.00788635	FOXA2_FOXJ3	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr6_-_25830785_25830844	0.00777623	FOXA2_FOXJ3	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr6_+_12958137_12958234	0.00754275	FOXA2_FOXJ3	ENST00000457702.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1 	ENST00000379345.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr16_+_6069072_6069132	0.00749237	FOXA2_FOXJ3	ENST00000547605.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000550418.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000553186.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr20_-_25677465_25677497	0.00713613	FOXA2_FOXJ3	ENST00000252979.5|ZNF337|ENSG00000130684.9|zinc finger protein 337
hg19_v2_chrX_-_50557302_50557316	0.00707661	FOXA2_FOXJ3	ENST00000289292.7|SHROOM4|ENSG00000158352.11|shroom family member 4
hg19_v2_chr10_-_69597828_69597854	0.00685468	FOXA2_FOXJ3	ENST00000339758.7|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr5_+_29143603_29143622	0.0067898	FOXA2_FOXJ3	ENST00000602470.1|CTD-2118P12.1|ENSG00000259786.2|CTD-2118P12.1	ENST00000602801.1|CTD-2118P12.1|ENSG00000259786.2|CTD-2118P12.1
hg19_v2_chr5_-_36301984_36302010	0.00676539	FOXA2_FOXJ3	ENST00000502994.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000515759.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000296604.3|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like
hg19_v2_chr5_-_9630463_9630463	0.00554056	FOXA2_FOXJ3	ENST00000382492.2|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1
hg19_v2_chr16_-_4817129_4817219	0.00537442	FOXA2_FOXJ3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr12_-_102591604_102591623	0.00527855	FOXA2_FOXJ3	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr1_+_192544857_192544912	0.00511329	FOXA2_FOXJ3	ENST00000367459.3|RGS1|ENSG00000090104.7|regulator of G-protein signaling 1 	ENST00000469578.2|RGS1|ENSG00000090104.7|regulator of G-protein signaling 1
hg19_v2_chr1_-_168464875_168464884	0.00490255	FOXA2_FOXJ3	ENST00000422253.1|RP5-968D22.3|ENSG00000237658.1|RP5-968D22.3
hg19_v2_chr3_-_185641681_185641781	0.00483429	FOXA2_FOXJ3	ENST00000259043.7|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr1_-_161193349_161193424	0.00460938	FOXA2_FOXJ3	ENST00000469730.2|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000463273.1|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000464492.1|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000367990.3|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000470459.2|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000468465.1|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000463812.1|APOA2|ENSG00000158874.7|apolipoprotein A-II
hg19_v2_chr19_-_19932501_19932569	0.0043596	FOXA2_FOXJ3	ENST00000540806.2|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000590766.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000587452.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000590274.1|CTC-559E9.4|ENSG00000267581.1|CTC-559E9.4	ENST00000545006.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000590319.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000587461.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000450683.2|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000443905.2|ZNF506|ENSG00000081665.9|zinc finger protein 506
hg19_v2_chr4_+_165675269_165675289	0.00395758	FOXA2_FOXJ3	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr7_+_62809239_62809239	0.00394713	FOXA2_FOXJ3	ENST00000456890.1|AC006455.1|ENSG00000230000.1|AC006455.1
hg19_v2_chr3_+_151591422_151591440	0.00388514	FOXA2_FOXJ3	ENST00000362032.5|SUCNR1|ENSG00000198829.5|succinate receptor 1
hg19_v2_chr2_-_128615681_128615737	0.00382911	FOXA2_FOXJ3	ENST00000409955.1|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D 	ENST00000272645.4|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D
hg19_v2_chr6_-_137494775_137494785	0.00363602	FOXA2_FOXJ3	ENST00000349184.4|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2 	ENST00000296980.2|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2 	ENST00000339602.3|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2
hg19_v2_chr1_-_177939041_177939053	0.00332303	FOXA2_FOXJ3	ENST00000308284.6|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr19_-_39826639_39826825	0.00327708	FOXA2_FOXJ3	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr5_+_176853702_176853855	0.00327464	FOXA2_FOXJ3	ENST00000507633.1|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000393576.3|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000355958.5|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000528793.1|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000512684.1|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6
hg19_v2_chr4_-_76008706_76008878	0.00325671	FOXA2_FOXJ3	ENST00000562355.1|RP11-44F21.5|ENSG00000260265.1|RP11-44F21.5	ENST00000563602.1|RP11-44F21.5|ENSG00000260265.1|RP11-44F21.5
hg19_v2_chr2_+_169757750_169757835	0.00325002	FOXA2_FOXJ3	ENST00000375363.3|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000429379.2|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000421979.1|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2
hg19_v2_chr10_+_94352956_94353043	0.00291204	FOXA2_FOXJ3	ENST00000260731.3|KIF11|ENSG00000138160.4|kinesin family member 11
hg19_v2_chr14_+_102606181_102606261	0.00280305	FOXA2_FOXJ3	ENST00000335263.5|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000322340.5|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000424963.2|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000342702.3|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000556807.1|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000499851.2|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000558567.1|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000299135.6|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000454394.2|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000556511.2|WDR20|ENSG00000140153.13|WD repeat domain 20
hg19_v2_chr1_-_77685084_77685122	0.00258899	FOXA2_FOXJ3	ENST00000370812.3|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K 	ENST00000359130.1|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K 	ENST00000445065.1|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K 	ENST00000370813.5|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K
hg19_v2_chr16_+_48278178_48278336	0.00243657	FOXA2_FOXJ3	ENST00000285737.4|LONP2|ENSG00000102910.9|lon peptidase 2, peroxisomal 	ENST00000535754.1|LONP2|ENSG00000102910.9|lon peptidase 2, peroxisomal
hg19_v2_chr14_+_102276209_102276242	0.00203478	FOXA2_FOXJ3	ENST00000445439.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000334743.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557095.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr7_-_66460563_66460605	0.00107912	FOXA2_FOXJ3	ENST00000246868.2|SBDS|ENSG00000126524.5|Shwachman-Bodian-Diamond syndrome
hg19_v2_chr6_+_54172653_54172764	0.000571031	FOXA2_FOXJ3	ENST00000370869.3|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen
hg19_v2_chr1_+_207669573_207669606	0.000536652	FOXA2_FOXJ3	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr8_-_30585439_30585494	0.000119395	FOXA2_FOXJ3	ENST00000221130.5|GSR|ENSG00000104687.8|glutathione reductase
