hg19_v2_chr2_+_128175997_128176020	0.304122	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr8_+_97597148_97597173	0.253274	FOXA3_FOXC2	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr17_-_66951474_66951550	0.245205	FOXA3_FOXC2	ENST00000269080.2|ABCA8|ENSG00000141338.9|ATP-binding cassette, sub-family A (ABC1), member 8
hg19_v2_chr5_+_156712372_156712440	0.237011	FOXA3_FOXC2	ENST00000541131.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr18_-_25616519_25616549	0.227587	FOXA3_FOXC2	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr12_-_15038779_15038860	0.227498	FOXA3_FOXC2	ENST00000228938.5|MGP|ENSG00000111341.5|matrix Gla protein 	ENST00000539261.1|MGP|ENSG00000111341.5|matrix Gla protein
hg19_v2_chrX_+_85969626_85969664	0.227075	FOXA3_FOXC2	ENST00000484479.1|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr9_-_95186739_95186763	0.224473	FOXA3_FOXC2	ENST00000375550.4|OMD|ENSG00000127083.7|osteomodulin
hg19_v2_chr17_-_19290483_19290553	0.195702	FOXA3_FOXC2	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr5_+_40841276_40841312	0.173294	FOXA3_FOXC2	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr3_+_148447887_148447911	0.165715	FOXA3_FOXC2	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr8_-_120651020_120651091	0.163387	FOXA3_FOXC2	ENST00000522826.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000520066.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000259486.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000075322.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chr1_+_159141397_159141549	0.156048	FOXA3_FOXC2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr4_-_138453606_138453673	0.150344	FOXA3_FOXC2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr3_-_105588231_105588396	0.14024	FOXA3_FOXC2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr8_+_104384616_104384661	0.138389	FOXA3_FOXC2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr6_+_72922590_72922605	0.136097	FOXA3_FOXC2	ENST00000523963.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr6_+_72922505_72922516	0.135892	FOXA3_FOXC2	ENST00000401910.3|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr17_-_29641084_29641103	0.128605	FOXA3_FOXC2	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr12_+_59989918_59989965	0.127763	FOXA3_FOXC2	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr12_-_92539614_92539673	0.127564	FOXA3_FOXC2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr6_-_88875654_88875767	0.121624	FOXA3_FOXC2	ENST00000535130.1|CNR1|ENSG00000118432.11|cannabinoid receptor 1 (brain)
hg19_v2_chr10_+_95848824_95848852	0.117504	FOXA3_FOXC2	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr3_+_69985734_69985754	0.116404	FOXA3_FOXC2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr2_-_175711133_175711158	0.116368	FOXA3_FOXC2	ENST00000409597.1|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000413882.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr3_+_114012819_114012833	0.114001	FOXA3_FOXC2	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr2_+_88047606_88047606	0.108282	FOXA3_FOXC2	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr14_+_21156915_21156943	0.106674	FOXA3_FOXC2	ENST00000397990.4|ANG|ENSG00000214274.5|angiogenin, ribonuclease, RNase A family, 5 	ENST00000555597.1|RNASE4|ENSG00000258818.2|ribonuclease, RNase A family, 4
hg19_v2_chr20_+_31823792_31823808	0.101299	FOXA3_FOXC2	ENST00000375413.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000354297.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000375422.2|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1
hg19_v2_chr10_+_70847852_70847874	0.0989441	FOXA3_FOXC2	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr2_+_179318295_179318295	0.0974507	FOXA3_FOXC2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr4_-_186696425_186696452	0.0955448	FOXA3_FOXC2	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr7_+_106809406_106809460	0.0945444	FOXA3_FOXC2	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr4_-_138453559_138453572	0.0932316	FOXA3_FOXC2	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr16_-_87970122_87970122	0.0927668	FOXA3_FOXC2	ENST00000309893.2|CA5A|ENSG00000174990.3|carbonic anhydrase VA, mitochondrial
hg19_v2_chr10_-_49482907_49482941	0.0890511	FOXA3_FOXC2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr6_+_101846664_101846702	0.0816814	FOXA3_FOXC2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr11_-_102401469_102401488	0.0811804	FOXA3_FOXC2	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr7_+_138943265_138943265	0.0811128	FOXA3_FOXC2	ENST00000483726.1|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr3_-_186080012_186080030	0.0769223	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr17_-_26694979_26695007	0.0756375	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr3_+_69985792_69985874	0.0720424	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr17_-_26695013_26695033	0.0709779	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr12_+_59989791_59989874	0.0707291	FOXA3_FOXC2	ENST00000552432.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr18_-_52626622_52626739	0.0686429	FOXA3_FOXC2	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr6_+_122793058_122793087	0.0680075	FOXA3_FOXC2	ENST00000392491.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr7_+_134576317_134576374	0.062257	FOXA3_FOXC2	ENST00000424922.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000495522.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr6_-_117747015_117747048	0.0614377	FOXA3_FOXC2	ENST00000368508.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase 	ENST00000368507.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase
hg19_v2_chr1_+_104293028_104293028	0.0602921	FOXA3_FOXC2	ENST00000370079.3|AMY1C|ENSG00000187733.6|amylase, alpha 1C (salivary)
hg19_v2_chr3_-_114343039_114343085	0.0596252	FOXA3_FOXC2	ENST00000481632.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr16_-_3350614_3350614	0.0594274	FOXA3_FOXC2	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr16_-_67597789_67597861	0.0572941	FOXA3_FOXC2	ENST00000605277.1|CTD-2012K14.6|ENSG00000261386.2|CTD-2012K14.6
hg19_v2_chr2_-_145275228_145275464	0.0562058	FOXA3_FOXC2	ENST00000427902.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409487.3|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000470879.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000435831.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr1_-_120354079_120354283	0.055195	FOXA3_FOXC2	ENST00000354219.1|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000369401.4|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000256585.5|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4
hg19_v2_chr7_+_151038850_151038915	0.0548839	FOXA3_FOXC2	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr2_+_109223595_109223617	0.0546291	FOXA3_FOXC2	ENST00000410093.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr5_+_140710061_140710252	0.0542349	FOXA3_FOXC2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr2_+_220042933_220042985	0.0540877	FOXA3_FOXC2	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chrX_+_9431324_9431371	0.0536806	FOXA3_FOXC2	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr7_+_134430212_134430237	0.0533757	FOXA3_FOXC2	ENST00000436461.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr14_-_101036119_101036131	0.0527385	FOXA3_FOXC2	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr5_+_101569696_101569696	0.0513584	FOXA3_FOXC2	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr10_-_118032697_118032796	0.0511699	FOXA3_FOXC2	ENST00000439649.3|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr4_+_88754113_88754139	0.0505393	FOXA3_FOXC2	ENST00000560249.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000540395.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000511670.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000361056.3|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr3_-_187455680_187455732	0.0502781	FOXA3_FOXC2	ENST00000438077.1|BCL6|ENSG00000113916.13|B-cell CLL/lymphoma 6
hg19_v2_chr4_+_88754069_88754112	0.0475024	FOXA3_FOXC2	ENST00000395102.4|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000497649.2|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr20_+_45338126_45338303	0.0461911	FOXA3_FOXC2	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr1_-_57431679_57431810	0.044557	FOXA3_FOXC2	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr3_+_119316689_119316710	0.0442846	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr3_+_119316721_119316739	0.0437441	FOXA3_FOXC2	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr4_+_86396265_86396276	0.0435704	FOXA3_FOXC2	ENST00000395184.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr2_+_175260514_175260536	0.0434086	FOXA3_FOXC2	ENST00000424069.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000427038.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr1_+_104159999_104160068	0.043151	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr1_+_101361782_101361810	0.0426782	FOXA3_FOXC2	ENST00000357650.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr6_+_108882069_108882087	0.0424059	FOXA3_FOXC2	ENST00000406360.1|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr7_+_142829162_142829176	0.0423775	FOXA3_FOXC2	ENST00000291009.3|PIP|ENSG00000159763.3|prolactin-induced protein
hg19_v2_chr4_-_70826725_70826725	0.0411407	FOXA3_FOXC2	ENST00000353151.3|CSN2|ENSG00000135222.6|casein beta
hg19_v2_chr2_-_32490859_32490923	0.0391011	FOXA3_FOXC2	ENST00000404025.2|NLRC4|ENSG00000091106.14|NLR family, CARD domain containing 4
hg19_v2_chr2_+_135596106_135596137	0.0389106	FOXA3_FOXC2	ENST00000356140.5|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr1_-_207095212_207095278	0.0372796	FOXA3_FOXC2	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr1_+_18957500_18957623	0.0371097	FOXA3_FOXC2	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr2_+_175260451_175260513	0.0368551	FOXA3_FOXC2	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr11_-_82708519_82708523	0.0364811	FOXA3_FOXC2	ENST00000534301.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr1_-_177939348_177939395	0.03635	FOXA3_FOXC2	ENST00000464631.2|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr4_-_21950356_21950439	0.0353585	FOXA3_FOXC2	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr2_+_135596180_135596193	0.0352308	FOXA3_FOXC2	ENST00000283054.4|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase 	ENST00000392928.1|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr6_+_12717892_12717903	0.0352169	FOXA3_FOXC2	ENST00000379350.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr1_-_169555779_169555826	0.035166	FOXA3_FOXC2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr14_-_74551096_74551171	0.0342082	FOXA3_FOXC2	ENST00000350259.4|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr17_+_56232494_56232494	0.0336818	FOXA3_FOXC2	ENST00000268912.5|OR4D1|ENSG00000141194.5|olfactory receptor, family 4, subfamily D, member 1
hg19_v2_chr5_+_140529630_140529683	0.0333749	FOXA3_FOXC2	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr20_-_43150601_43150751	0.0330175	FOXA3_FOXC2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr2_-_106054952_106054977	0.0327628	FOXA3_FOXC2	ENST00000336660.5|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393352.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000607522.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr3_-_71294304_71294332	0.0326548	FOXA3_FOXC2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr14_+_74034310_74034345	0.0324645	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr8_+_75736761_75736777	0.0319291	FOXA3_FOXC2	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr11_-_82708435_82708472	0.0316917	FOXA3_FOXC2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr20_+_31870927_31870969	0.0312673	FOXA3_FOXC2	ENST00000253354.1|BPIFB1|ENSG00000125999.6|BPI fold containing family B, member 1
hg19_v2_chr3_+_50712672_50712703	0.0303679	FOXA3_FOXC2	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr2_+_166150541_166150594	0.0301799	FOXA3_FOXC2	ENST00000283256.6|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr6_+_21666633_21666681	0.0301786	FOXA3_FOXC2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr8_+_52730143_52730143	0.0288738	FOXA3_FOXC2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr6_-_87804815_87804830	0.0287923	FOXA3_FOXC2	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr2_+_105050794_105050854	0.0287863	FOXA3_FOXC2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chrX_+_65382433_65382486	0.0287537	FOXA3_FOXC2	ENST00000374727.3|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr8_+_95908041_95908065	0.0287351	FOXA3_FOXC2	ENST00000396113.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 	ENST00000519136.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr16_-_15474904_15474904	0.0283001	FOXA3_FOXC2	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr18_+_61575200_61575230	0.0271858	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr12_-_71551652_71551679	0.0265755	FOXA3_FOXC2	ENST00000546561.1|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr14_-_74551172_74551196	0.0265244	FOXA3_FOXC2	ENST00000553458.1|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr2_+_169659121_169659157	0.0263662	FOXA3_FOXC2	ENST00000397206.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000397209.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000421711.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr17_-_39471947_39471963	0.0262856	FOXA3_FOXC2	ENST00000334202.3|KRTAP17-1|ENSG00000186860.3|keratin associated protein 17-1
hg19_v2_chr5_-_159846399_159846412	0.0262658	FOXA3_FOXC2	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr21_+_17791648_17791775	0.0253133	FOXA3_FOXC2	ENST00000602892.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000418813.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000435697.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr16_+_14802801_14802801	0.0251023	FOXA3_FOXC2	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr2_+_169658928_169659113	0.0250135	FOXA3_FOXC2	ENST00000317647.7|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000445023.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr6_-_122792919_122792970	0.0248133	FOXA3_FOXC2	ENST00000339697.4|SERINC1|ENSG00000111897.6|serine incorporator 1
hg19_v2_chr12_+_58087901_58087947	0.0244673	FOXA3_FOXC2	ENST00000315970.7|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000547079.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000439210.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389146.6|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000413095.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000551035.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000257966.8|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000435406.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000550372.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389142.5|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr8_+_67579807_67579887	0.0243901	FOXA3_FOXC2	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr14_-_94789663_94789731	0.0243081	FOXA3_FOXC2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chr15_+_60296421_60296464	0.0242336	FOXA3_FOXC2	ENST00000396057.4|FOXB1|ENSG00000171956.5|forkhead box B1
hg19_v2_chr11_+_8040739_8040815	0.0241155	FOXA3_FOXC2	ENST00000534099.1|TUB|ENSG00000166402.4|tubby bipartite transcription factor
hg19_v2_chr2_-_183291741_183291771	0.0239112	FOXA3_FOXC2	ENST00000351439.5|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent 	ENST00000409365.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr18_+_3449330_3449411	0.0238309	FOXA3_FOXC2	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr14_-_25479811_25479846	0.023795	FOXA3_FOXC2	ENST00000550887.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr1_+_246729724_246729794	0.0237845	FOXA3_FOXC2	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr14_-_24664540_24664690	0.02374	FOXA3_FOXC2	ENST00000530563.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528895.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528669.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000532632.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1
hg19_v2_chr17_-_46688334_46688385	0.0236787	FOXA3_FOXC2	ENST00000239165.7|HOXB7|ENSG00000260027.3|homeobox B7
hg19_v2_chr20_+_44519948_44519986	0.0235037	FOXA3_FOXC2	ENST00000354880.5|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000191018.5|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr20_+_9494987_9495027	0.023285	FOXA3_FOXC2	ENST00000427562.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5 	ENST00000246070.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5
hg19_v2_chr7_+_134464376_134464413	0.0229108	FOXA3_FOXC2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr14_-_70263979_70264009	0.0226837	FOXA3_FOXC2	ENST00000216540.4|SLC10A1|ENSG00000100652.4|solute carrier family 10 (sodium/bile acid cotransporter), member 1
hg19_v2_chr3_+_141106643_141106681	0.0226708	FOXA3_FOXC2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr9_-_70490107_70490246	0.0223351	FOXA3_FOXC2	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr13_-_39564993_39565002	0.0222647	FOXA3_FOXC2	ENST00000423210.1|STOML3|ENSG00000133115.7|stomatin (EPB72)-like 3
hg19_v2_chr19_+_50380682_50380822	0.022246	FOXA3_FOXC2	ENST00000221543.5|TBC1D17|ENSG00000104946.6|TBC1 domain family, member 17
hg19_v2_chr1_+_40974431_40974447	0.0222236	FOXA3_FOXC2	ENST00000296380.4|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000432259.1|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000418186.1|EXO5|ENSG00000164002.7|exonuclease 5
hg19_v2_chr7_+_106505696_106505798	0.0222029	FOXA3_FOXC2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr1_-_146696901_146696974	0.0221313	FOXA3_FOXC2	ENST00000369272.3|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5 	ENST00000441068.2|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5
hg19_v2_chr12_-_92536433_92536459	0.0215418	FOXA3_FOXC2	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr2_-_182545603_182545603	0.0214686	FOXA3_FOXC2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr2_-_65593784_65593817	0.0214509	FOXA3_FOXC2	ENST00000443619.2|SPRED2|ENSG00000198369.5|sprouty-related, EVH1 domain containing 2
hg19_v2_chr7_-_107443652_107443675	0.0213939	FOXA3_FOXC2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr19_+_50380917_50380938	0.021275	FOXA3_FOXC2	ENST00000535102.2|TBC1D17|ENSG00000104946.6|TBC1 domain family, member 17
hg19_v2_chr1_+_18958008_18958023	0.0202962	FOXA3_FOXC2	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr1_+_114471809_114471855	0.0202926	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr2_+_68592305_68592405	0.0201314	FOXA3_FOXC2	ENST00000234313.7|PLEK|ENSG00000115956.9|pleckstrin
hg19_v2_chr21_+_17791838_17791869	0.0200601	FOXA3_FOXC2	ENST00000453910.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr3_-_168864427_168864464	0.0199025	FOXA3_FOXC2	ENST00000468789.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus
hg19_v2_chr1_+_207277590_207277620	0.0197691	FOXA3_FOXC2	ENST00000367070.3|C4BPA|ENSG00000123838.6|complement component 4 binding protein, alpha
hg19_v2_chr9_+_70856397_70856397	0.0193104	FOXA3_FOXC2	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr7_+_116654935_116654949	0.0192882	FOXA3_FOXC2	ENST00000432298.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000422922.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr20_+_44520009_44520020	0.0190001	FOXA3_FOXC2	ENST00000607482.1|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000372459.2|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr4_+_148653206_148653219	0.0189101	FOXA3_FOXC2	ENST00000336498.3|ARHGAP10|ENSG00000071205.7|Rho GTPase activating protein 10
hg19_v2_chr21_-_43786634_43786703	0.0186591	FOXA3_FOXC2	ENST00000291527.2|TFF1|ENSG00000160182.2|trefoil factor 1
hg19_v2_chr7_+_134464414_134464429	0.0183057	FOXA3_FOXC2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr2_-_87248975_87248975	0.0182692	FOXA3_FOXC2	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chrX_+_10124977_10125036	0.0182162	FOXA3_FOXC2	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr15_-_40600026_40600061	0.0180236	FOXA3_FOXC2	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr14_+_52164820_52164841	0.0178996	FOXA3_FOXC2	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr1_+_12806141_12806199	0.0177968	FOXA3_FOXC2	ENST00000288048.5|C1orf158|ENSG00000157330.5|chromosome 1 open reading frame 158
hg19_v2_chr3_+_130569592_130569620	0.0177874	FOXA3_FOXC2	ENST00000533801.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr19_-_18902106_18902123	0.0177469	FOXA3_FOXC2	ENST00000542601.2|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein 	ENST00000425807.1|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein 	ENST00000222271.2|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein
hg19_v2_chr12_+_72080253_72080293	0.0177432	FOXA3_FOXC2	ENST00000549735.1|TMEM19|ENSG00000139291.9|transmembrane protein 19
hg19_v2_chrX_+_90689810_90689826	0.0177259	FOXA3_FOXC2	ENST00000312600.3|PABPC5|ENSG00000174740.7|poly(A) binding protein, cytoplasmic 5
hg19_v2_chr10_+_35484053_35484076	0.0176776	FOXA3_FOXC2	ENST00000487763.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000473940.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000488328.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000356917.5|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr10_-_21435488_21435488	0.0174807	FOXA3_FOXC2	ENST00000534331.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000529198.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000377118.4|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113
hg19_v2_chr10_-_31288398_31288455	0.0174322	FOXA3_FOXC2	ENST00000538351.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr2_-_175260368_175260450	0.0172404	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr2_-_145275211_145275220	0.0165882	FOXA3_FOXC2	ENST00000462355.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr7_-_81399411_81399432	0.0165529	FOXA3_FOXC2	ENST00000423064.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr10_-_4285923_4286104	0.01652	FOXA3_FOXC2	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr2_-_188312971_188312987	0.0162269	FOXA3_FOXC2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr3_-_116163830_116163855	0.0161499	FOXA3_FOXC2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr8_+_95907993_95908004	0.0155736	FOXA3_FOXC2	ENST00000523378.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr18_-_31803435_31803515	0.0155387	FOXA3_FOXC2	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr14_-_23526739_23526766	0.015522	FOXA3_FOXC2	ENST00000397359.3|CDH24|ENSG00000139880.15|cadherin 24, type 2 	ENST00000487137.2|CDH24|ENSG00000139880.15|cadherin 24, type 2
hg19_v2_chr1_+_84609944_84609964	0.0154295	FOXA3_FOXC2	ENST00000370685.3|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr6_-_112575687_112575755	0.0151647	FOXA3_FOXC2	ENST00000521398.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000424408.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000243219.3|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr7_+_106505912_106505931	0.0146071	FOXA3_FOXC2	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr3_+_159570722_159570733	0.0143362	FOXA3_FOXC2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr6_+_30103885_30103922	0.0141349	FOXA3_FOXC2	ENST00000396581.1|TRIM40|ENSG00000204614.4|tripartite motif containing 40
hg19_v2_chr6_-_26056695_26056701	0.0140822	FOXA3_FOXC2	ENST00000343677.2|HIST1H1C|ENSG00000187837.2|histone cluster 1, H1c
hg19_v2_chr1_-_43855479_43855486	0.0138299	FOXA3_FOXC2	ENST00000290663.6|MED8|ENSG00000159479.12|mediator complex subunit 8 	ENST00000372457.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr1_+_151739131_151739177	0.0135292	FOXA3_FOXC2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr15_+_71185148_71185214	0.0134174	FOXA3_FOXC2	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr8_+_55528627_55528631	0.0132654	FOXA3_FOXC2	ENST00000220676.1|RP1|ENSG00000104237.6|retinitis pigmentosa 1 (autosomal dominant)
hg19_v2_chr19_+_782755_782833	0.0132487	FOXA3_FOXC2	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr18_-_53070913_53070945	0.013098	FOXA3_FOXC2	ENST00000568186.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564228.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr14_+_23654525_23654545	0.0129923	FOXA3_FOXC2	ENST00000399910.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164 	ENST00000492621.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164
hg19_v2_chr18_+_21033239_21033302	0.0129642	FOXA3_FOXC2	ENST00000581585.1|RIOK3|ENSG00000101782.10|RIO kinase 3 	ENST00000577501.1|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chrX_-_80457385_80457441	0.0129007	FOXA3_FOXC2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr1_+_43855560_43855640	0.0125312	FOXA3_FOXC2	ENST00000562955.1|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr4_-_170679024_170679104	0.0125291	FOXA3_FOXC2	ENST00000393381.2|C4orf27|ENSG00000056050.6|chromosome 4 open reading frame 27
hg19_v2_chr4_+_86396321_86396392	0.0124465	FOXA3_FOXC2	ENST00000503995.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr17_-_39203519_39203568	0.0124105	FOXA3_FOXC2	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr15_-_50411412_50411437	0.0123785	FOXA3_FOXC2	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr12_+_93096619_93096750	0.0122748	FOXA3_FOXC2	ENST00000397833.3|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr1_-_150602035_150602095	0.0120191	FOXA3_FOXC2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr1_+_61548225_61548299	0.0119893	FOXA3_FOXC2	ENST00000371187.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chrX_-_15402498_15402515	0.0116602	FOXA3_FOXC2	ENST00000297904.3|FIGF|ENSG00000165197.4|c-fos induced growth factor (vascular endothelial growth factor D)
hg19_v2_chr21_-_43771226_43771242	0.011512	FOXA3_FOXC2	ENST00000291526.4|TFF2|ENSG00000160181.4|trefoil factor 2
hg19_v2_chr5_+_57787254_57787271	0.0114041	FOXA3_FOXC2	ENST00000502276.1|GAPT|ENSG00000175857.4|GRB2-binding adaptor protein, transmembrane 	ENST00000396776.2|GAPT|ENSG00000175857.4|GRB2-binding adaptor protein, transmembrane 	ENST00000511930.1|GAPT|ENSG00000175857.4|GRB2-binding adaptor protein, transmembrane
hg19_v2_chr3_+_158991025_158991083	0.0113654	FOXA3_FOXC2	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr12_+_93096759_93096804	0.0112565	FOXA3_FOXC2	ENST00000544406.2|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr10_-_128210005_128210014	0.011211	FOXA3_FOXC2	ENST00000284694.7|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000454341.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000432642.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000392694.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chrX_+_65382381_65382392	0.0111214	FOXA3_FOXC2	ENST00000519389.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr11_-_57158109_57158130	0.011111	FOXA3_FOXC2	ENST00000525955.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000533605.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000311862.5|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)
hg19_v2_chr17_-_79212825_79212865	0.011062	FOXA3_FOXC2	ENST00000374769.2|ENTHD2|ENSG00000167302.5|ENTH domain containing 2
hg19_v2_chr5_+_81601166_81601166	0.0110589	FOXA3_FOXC2	ENST00000439350.1|ATP6AP1L|ENSG00000205464.7|ATPase, H+ transporting, lysosomal accessory protein 1-like
hg19_v2_chr3_-_99833333_99833357	0.0109027	FOXA3_FOXC2	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr1_+_43855545_43855557	0.0105176	FOXA3_FOXC2	ENST00000372450.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse) 	ENST00000310739.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr13_+_50589390_50589543	0.0104771	FOXA3_FOXC2	ENST00000360473.4|KCNRG|ENSG00000198553.4|potassium channel regulator 	ENST00000312942.1|KCNRG|ENSG00000198553.4|potassium channel regulator
hg19_v2_chr1_+_150488205_150488251	0.0101703	FOXA3_FOXC2	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr4_-_71532339_71532377	0.010102	FOXA3_FOXC2	ENST00000254801.4|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr1_+_35225339_35225343	0.0100861	FOXA3_FOXC2	ENST00000339480.1|GJB4|ENSG00000189433.5|gap junction protein, beta 4, 30.3kDa
hg19_v2_chr15_+_96869165_96869183	0.0100242	FOXA3_FOXC2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chrX_+_135730373_135730399	0.00997715	FOXA3_FOXC2	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr5_+_140787600_140787770	0.0099308	FOXA3_FOXC2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr1_-_152332480_152332484	0.00988569	FOXA3_FOXC2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chrX_+_135730297_135730352	0.00984424	FOXA3_FOXC2	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr17_-_79212884_79212895	0.00975242	FOXA3_FOXC2	ENST00000300714.3|ENTHD2|ENSG00000167302.5|ENTH domain containing 2
hg19_v2_chr1_+_179851823_179851846	0.00971652	FOXA3_FOXC2	ENST00000435319.4|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chrX_-_47863348_47863412	0.00962219	FOXA3_FOXC2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr1_+_154540246_154540260	0.00948073	FOXA3_FOXC2	ENST00000368476.3|CHRNB2|ENSG00000160716.4|cholinergic receptor, nicotinic, beta 2 (neuronal)
hg19_v2_chr1_-_154150651_154150691	0.009283	FOXA3_FOXC2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr6_-_25830785_25830844	0.00926322	FOXA3_FOXC2	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr6_-_112575758_112575802	0.00924157	FOXA3_FOXC2	ENST00000431543.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000453937.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000368638.4|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000389463.4|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr10_-_46030841_46030846	0.00923943	FOXA3_FOXC2	ENST00000453424.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr12_+_96588143_96588185	0.00920632	FOXA3_FOXC2	ENST00000228741.3|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2) 	ENST00000547249.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr9_+_131062367_131062367	0.00906033	FOXA3_FOXC2	ENST00000601297.1|AL359091.2|ENSG00000268211.1|CDNA: FLJ21673 fis, clone COL09042; HCG2036511; Uncharacterized protein
hg19_v2_chr6_-_42016385_42016706	0.00905466	FOXA3_FOXC2	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr1_-_150669604_150669643	0.00903837	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr7_+_134576151_134576171	0.00897972	FOXA3_FOXC2	ENST00000393118.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_+_114471972_114472000	0.00897128	FOXA3_FOXC2	ENST00000369559.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369554.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr1_-_16763685_16763685	0.00873493	FOXA3_FOXC2	ENST00000540400.1|SPATA21|ENSG00000187144.7|spermatogenesis associated 21
hg19_v2_chr6_+_161123270_161123278	0.00870419	FOXA3_FOXC2	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr6_+_146348810_146348918	0.00867613	FOXA3_FOXC2	ENST00000492807.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr10_+_124739911_124739957	0.00857822	FOXA3_FOXC2	ENST00000405485.1|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr8_-_23261589_23261753	0.00845659	FOXA3_FOXC2	ENST00000524168.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000523833.2|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000519243.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000389131.3|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr3_+_132843652_132843709	0.00833441	FOXA3_FOXC2	ENST00000508711.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr2_-_46844159_46844209	0.00831848	FOXA3_FOXC2	ENST00000474980.1|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F 	ENST00000306465.4|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr7_-_107643674_107643700	0.00830513	FOXA3_FOXC2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr14_+_105267250_105267250	0.0082609	FOXA3_FOXC2	ENST00000342537.7|ZBTB42|ENSG00000179627.9|zinc finger and BTB domain containing 42
hg19_v2_chr8_+_92261516_92261555	0.00820238	FOXA3_FOXC2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr6_+_146348782_146348809	0.00814596	FOXA3_FOXC2	ENST00000361719.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000392299.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr6_-_161085291_161085308	0.00813791	FOXA3_FOXC2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr13_+_52598827_52598827	0.00811401	FOXA3_FOXC2	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr5_+_74807886_74807926	0.00808565	FOXA3_FOXC2	ENST00000514296.1|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr3_+_132316081_132316102	0.00787678	FOXA3_FOXC2	ENST00000249887.2|ACKR4|ENSG00000129048.6|atypical chemokine receptor 4
hg19_v2_chr11_+_20044096_20044116	0.00778308	FOXA3_FOXC2	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr2_-_46844242_46844258	0.00756839	FOXA3_FOXC2	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr10_+_81466084_81466084	0.00744821	FOXA3_FOXC2	ENST00000342531.2|NUTM2B|ENSG00000188199.6|NUT family member 2B
hg19_v2_chr1_-_150669500_150669602	0.00736201	FOXA3_FOXC2	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr9_-_110251836_110251927	0.0073333	FOXA3_FOXC2	ENST00000374672.4|KLF4|ENSG00000136826.10|Kruppel-like factor 4 (gut)
hg19_v2_chr4_-_140223670_140223705	0.00724068	FOXA3_FOXC2	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr19_+_13906250_13906274	0.00723193	FOXA3_FOXC2	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr4_-_116034979_116035046	0.00715286	FOXA3_FOXC2	ENST00000264363.2|NDST4|ENSG00000138653.5|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
hg19_v2_chrX_-_55020511_55020626	0.00700542	FOXA3_FOXC2	ENST00000375006.3|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 	ENST00000374992.2|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr14_-_38064198_38064239	0.00690499	FOXA3_FOXC2	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr1_-_43855444_43855478	0.00689627	FOXA3_FOXC2	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr8_-_59412717_59412795	0.00687139	FOXA3_FOXC2	ENST00000301645.3|CYP7A1|ENSG00000167910.3|cytochrome P450, family 7, subfamily A, polypeptide 1
hg19_v2_chr1_-_151431647_151431669	0.0068415	FOXA3_FOXC2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr10_-_46030787_46030824	0.00680308	FOXA3_FOXC2	ENST00000395769.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr6_-_112575912_112575931	0.00667925	FOXA3_FOXC2	ENST00000522006.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000230538.7|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000519932.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chrX_+_26156460_26156460	0.00652097	FOXA3_FOXC2	ENST00000325250.1|MAGEB18|ENSG00000176774.5|melanoma antigen family B, 18
hg19_v2_chr15_+_69857515_69857531	0.00651793	FOXA3_FOXC2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr10_+_124739964_124739994	0.00647032	FOXA3_FOXC2	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr12_+_96588279_96588323	0.00620003	FOXA3_FOXC2	ENST00000552142.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr19_-_50380536_50380618	0.00585998	FOXA3_FOXC2	ENST00000391832.3|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000391834.2|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000344175.5|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich)
hg19_v2_chr19_-_46088068_46088100	0.00539964	FOXA3_FOXC2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr15_+_75940218_75940298	0.00527063	FOXA3_FOXC2	ENST00000308527.5|SNX33|ENSG00000173548.8|sorting nexin 33
hg19_v2_chr21_+_17792672_17792775	0.00521605	FOXA3_FOXC2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr4_-_103266626_103266647	0.00515362	FOXA3_FOXC2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr6_-_112575838_112575849	0.00514138	FOXA3_FOXC2	ENST00000455073.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr4_+_71587669_71587752	0.00497741	FOXA3_FOXC2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr10_+_105315102_105315137	0.00483129	FOXA3_FOXC2	ENST00000369777.2|NEURL|ENSG00000107954.6|neuralized E3 ubiquitin protein ligase 1
hg19_v2_chr20_+_44035200_44035288	0.00444802	FOXA3_FOXC2	ENST00000372717.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENST00000360981.4|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr17_-_44270133_44270207	0.00436505	FOXA3_FOXC2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr8_-_145754428_145754516	0.00422393	FOXA3_FOXC2	ENST00000527462.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000313465.5|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000524821.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82
hg19_v2_chr1_+_179851410_179851447	0.00418503	FOXA3_FOXC2	ENST00000271583.3|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1 	ENST00000606911.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr3_+_130569429_130569479	0.00415442	FOXA3_FOXC2	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr18_-_3874752_3874767	0.00402687	FOXA3_FOXC2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr17_+_7487146_7487211	0.00399253	FOXA3_FOXC2	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr16_-_4664860_4664927	0.00391148	FOXA3_FOXC2	ENST00000587615.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000587649.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000590965.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000591401.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000283474.7|UBALD1|ENSG00000153443.8|UBA-like domain containing 1
hg19_v2_chr15_+_76016293_76016321	0.00385646	FOXA3_FOXC2	ENST00000332145.2|ODF3L1|ENSG00000182950.2|outer dense fiber of sperm tails 3-like 1
hg19_v2_chr4_-_140223614_140223668	0.00377167	FOXA3_FOXC2	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr4_+_165675269_165675289	0.00375097	FOXA3_FOXC2	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr6_+_31582961_31583096	0.00371517	FOXA3_FOXC2	ENST00000376059.3|AIF1|ENSG00000204472.8|allograft inflammatory factor 1 	ENST00000337917.7|AIF1|ENSG00000204472.8|allograft inflammatory factor 1
hg19_v2_chr6_+_146350267_146350419	0.00362626	FOXA3_FOXC2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr17_-_26697304_26697373	0.00352751	FOXA3_FOXC2	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr18_+_21032781_21032795	0.00351687	FOXA3_FOXC2	ENST00000339486.3|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr16_-_4665023_4665047	0.00344723	FOXA3_FOXC2	ENST00000591897.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1
hg19_v2_chr2_+_46844290_46844384	0.00341852	FOXA3_FOXC2	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr8_-_133772794_133772840	0.0033401	FOXA3_FOXC2	ENST00000519187.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000523829.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000356838.3|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000377901.4|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000519304.1|TMEM71|ENSG00000165071.10|transmembrane protein 71
hg19_v2_chr1_-_54405773_54405874	0.00310456	FOXA3_FOXC2	ENST00000371376.1|HSPB11|ENSG00000081870.7|heat shock protein family B (small), member 11
hg19_v2_chr17_-_27038063_27038117	0.0030016	FOXA3_FOXC2	ENST00000439862.3|PROCA1|ENSG00000167525.9|protein interacting with cyclin A1
hg19_v2_chr4_+_76871883_76871883	0.00299753	FOXA3_FOXC2	ENST00000599764.1|AC110615.1|ENSG00000268788.1|Uncharacterized protein
hg19_v2_chr9_-_75567962_75567979	0.00299145	FOXA3_FOXC2	ENST00000297785.3|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1 	ENST00000376939.1|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1
hg19_v2_chr5_+_179921344_179921423	0.00292564	FOXA3_FOXC2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr1_+_179851176_179851197	0.00288366	FOXA3_FOXC2	ENST00000528443.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr6_-_24666819_24666974	0.0026437	FOXA3_FOXC2	ENST00000341060.3|TDP2|ENSG00000111802.9|tyrosyl-DNA phosphodiesterase 2
hg19_v2_chr12_-_53207842_53207907	0.0025522	FOXA3_FOXC2	ENST00000458244.2|KRT4|ENSG00000170477.8|keratin 4
hg19_v2_chrX_-_101410762_101411029	0.00206738	FOXA3_FOXC2	ENST00000543160.1|BEX5|ENSG00000184515.6|brain expressed, X-linked 5 	ENST00000333643.3|BEX5|ENSG00000184515.6|brain expressed, X-linked 5
hg19_v2_chr15_+_28624878_28624878	0.00196349	FOXA3_FOXC2	ENST00000450328.2|GOLGA8F|ENSG00000153684.10|golgin A8 family, member F
hg19_v2_chr4_-_88450244_88450287	0.00191847	FOXA3_FOXC2	ENST00000503414.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr11_-_110561721_110561721	0.00188647	FOXA3_FOXC2	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr1_-_179851611_179851730	0.00173986	FOXA3_FOXC2	ENST00000610272.1|RP11-533E19.7|ENSG00000272906.1|RP11-533E19.7
hg19_v2_chr19_-_10679644_10679661	0.00159176	FOXA3_FOXC2	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr6_+_44355257_44355315	0.00144504	FOXA3_FOXC2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr6_-_13621126_13621126	0.00132272	FOXA3_FOXC2	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr1_-_177939041_177939053	0.00128822	FOXA3_FOXC2	ENST00000308284.6|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr17_-_39140549_39140579	0.00127158	FOXA3_FOXC2	ENST00000377755.4|KRT40|ENSG00000204889.6|keratin 40
hg19_v2_chr6_+_146350622_146350749	0.00107385	FOXA3_FOXC2	ENST00000507907.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr15_-_59041768_59041950	0.000969423	FOXA3_FOXC2	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr5_+_74807581_74807724	0.000916375	FOXA3_FOXC2	ENST00000241436.4|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa 	ENST00000352007.5|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr16_-_86542652_86542705	0.000748006	FOXA3_FOXC2	ENST00000599749.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr1_-_151431909_151431987	0.000745301	FOXA3_FOXC2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr20_+_31619454_31619454	0.000709441	FOXA3_FOXC2	ENST00000349552.1|BPIFB6|ENSG00000167104.7|BPI fold containing family B, member 6
hg19_v2_chr17_-_39183452_39183468	0.00064405	FOXA3_FOXC2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr17_-_29641104_29641130	0.000510463	FOXA3_FOXC2	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr3_+_108855558_108855733	0.000319391	FOXA3_FOXC2	ENST00000467240.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000477643.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000479039.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000593799.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1
hg19_v2_chr6_+_44310376_44310413	0.000120864	FOXA3_FOXC2	ENST00000515220.1|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1 	ENST00000323108.8|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
