hg19_v2_chr18_+_21529811_21529857	5.37255	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr12_-_52887034_52887049	3.0831	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr19_-_51456344_51456364	3.06036	GLI3	ENST00000336334.3|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5 	ENST00000593428.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr19_-_51456321_51456332	3.05973	GLI3	ENST00000391809.2|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr12_-_52845910_52845938	2.86972	GLI3	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr1_+_183155373_183155423	2.82065	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr6_+_125540951_125540991	2.6991	GLI3	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr1_-_160990886_160990921	2.56502	GLI3	ENST00000537746.1|F11R|ENSG00000158769.13|F11 receptor
hg19_v2_chr19_+_35606692_35606769	2.46085	GLI3	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr12_-_52867569_52867598	2.36085	GLI3	ENST00000252250.6|KRT6C|ENSG00000170465.9|keratin 6C
hg19_v2_chr19_-_51456198_51456301	2.33256	GLI3	ENST00000594846.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr20_+_62327996_62328021	2.31429	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr19_-_35992780_35992815	2.23248	GLI3	ENST00000593342.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000601650.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000408915.2|DMKN|ENSG00000161249.16|dermokine
hg19_v2_chr16_+_68679193_68679253	2.1792	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr13_-_20806440_20806534	2.03733	GLI3	ENST00000400066.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000400065.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000356192.6|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa
hg19_v2_chr1_+_44399466_44399518	1.94304	GLI3	ENST00000498139.2|ARTN|ENSG00000117407.12|artemin 	ENST00000491846.1|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr16_+_68771128_68771255	1.85599	GLI3	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr20_+_44637526_44637554	1.80254	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr1_+_152956549_152956566	1.74919	GLI3	ENST00000307122.2|SPRR1A|ENSG00000169474.3|small proline-rich protein 1A
hg19_v2_chr16_+_68678739_68678833	1.5728	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr19_-_51522955_51523020	1.54417	GLI3	ENST00000358789.3|KLK10|ENSG00000129451.7|kallikrein-related peptidase 10
hg19_v2_chr8_+_31497271_31497285	1.437	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr14_-_61748550_61748559	1.43368	GLI3	ENST00000555868.1|TMEM30B|ENSG00000182107.5|transmembrane protein 30B
hg19_v2_chr1_+_233463507_233463520	1.3887	GLI3	ENST00000366623.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4  	ENST00000366624.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4
hg19_v2_chr11_+_32851487_32851496	1.38572	GLI3	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr12_-_8814669_8814767	1.34794	GLI3	ENST00000535411.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000540087.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr16_-_68269971_68270059	1.33918	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr1_+_3388181_3388194	1.30997	GLI3	ENST00000418137.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16 	ENST00000413250.2|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chr8_-_145642267_145642279	1.28249	GLI3	ENST00000301305.3|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr7_-_41742697_41742714	1.27225	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr15_+_40531621_40531719	1.26583	GLI3	ENST00000560346.1|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr11_+_69931519_69931528	1.24866	GLI3	ENST00000316296.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000530676.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr12_-_54779511_54779577	1.2429	GLI3	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr1_+_35220613_35220718	1.23661	GLI3	ENST00000338513.1|GJB5|ENSG00000189280.3|gap junction protein, beta 5, 31.1kDa
hg19_v2_chr15_+_90728145_90728213	1.21371	GLI3	ENST00000561085.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000379122.3|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000332496.6|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr10_+_71389983_71390040	1.20669	GLI3	ENST00000373279.4|C10orf35|ENSG00000171224.7|chromosome 10 open reading frame 35
hg19_v2_chr8_+_124194875_124194921	1.2042	GLI3	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr11_-_119991589_119991609	1.16985	GLI3	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr19_+_45312347_45312378	1.16445	GLI3	ENST00000270233.6|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group) 	ENST00000591520.1|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group)
hg19_v2_chr5_+_68788594_68788656	1.15939	GLI3	ENST00000396442.2|OCLN|ENSG00000197822.6|occludin 	ENST00000380766.2|OCLN|ENSG00000197822.6|occludin
hg19_v2_chr14_+_61788429_61788501	1.14121	GLI3	ENST00000332981.5|PRKCH|ENSG00000027075.9|protein kinase C, eta
hg19_v2_chr1_+_26869597_26869637	1.14106	GLI3	ENST00000530003.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr4_-_90758227_90758379	1.13561	GLI3	ENST00000506691.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394986.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000506244.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394989.2|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394991.3|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr14_-_94856987_94857000	1.1347	GLI3	ENST00000449399.3|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000404814.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr1_+_233765353_233765391	1.11722	GLI3	ENST00000366620.1|KCNK1|ENSG00000135750.10|potassium channel, subfamily K, member 1
hg19_v2_chr6_-_32784687_32784839	1.10985	GLI3	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr10_-_116164239_116164268	1.10235	GLI3	ENST00000419268.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000304129.4|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000545353.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chr16_+_57653854_57653968	1.09545	GLI3	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr7_+_69064300_69064342	1.09532	GLI3	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr16_+_57653989_57654022	1.09216	GLI3	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr1_-_201368707_201368760	1.08547	GLI3	ENST00000391967.2|LAD1|ENSG00000159166.9|ladinin 1
hg19_v2_chr8_+_124194752_124194835	1.07573	GLI3	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr13_-_20767037_20767083	1.06159	GLI3	ENST00000382848.4|GJB2|ENSG00000165474.5|gap junction protein, beta 2, 26kDa
hg19_v2_chr9_-_27529726_27529827	1.0532	GLI3	ENST00000262244.5|MOB3B|ENSG00000120162.9|MOB kinase activator 3B
hg19_v2_chr6_-_46703069_46703081	1.02246	GLI3	ENST00000538237.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 	ENST00000274793.7|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr17_-_39928106_39928152	1.01355	GLI3	ENST00000540235.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr7_-_994302_994333	1.00893	GLI3	ENST00000265846.5|ADAP1|ENSG00000105963.9|ArfGAP with dual PH domains 1
hg19_v2_chr20_-_6104191_6104228	1.00197	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr17_-_34122596_34122711	0.998222	GLI3	ENST00000250144.8|MMP28|ENSG00000129270.11|matrix metallopeptidase 28
hg19_v2_chr15_-_72490114_72490145	0.959672	GLI3	ENST00000309731.7|GRAMD2|ENSG00000175318.7|GRAM domain containing 2
hg19_v2_chrX_+_135618258_135618354	0.936683	GLI3	ENST00000440515.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila) 	ENST00000456412.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chr1_+_156123359_156123398	0.922411	GLI3	ENST00000368284.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000368286.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000438830.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr15_+_40532058_40532072	0.913136	GLI3	ENST00000260404.4|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr1_-_85358850_85358906	0.905524	GLI3	ENST00000370611.3|LPAR3|ENSG00000171517.5|lysophosphatidic acid receptor 3
hg19_v2_chr10_-_116164450_116164515	0.902417	GLI3	ENST00000369271.3|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chr8_+_21916710_21916734	0.89557	GLI3	ENST00000523266.1|DMTN|ENSG00000158856.13|dematin actin binding protein 	ENST00000519907.1|DMTN|ENSG00000158856.13|dematin actin binding protein
hg19_v2_chr17_+_73750699_73750793	0.893658	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr8_+_98900132_98900205	0.889698	GLI3	ENST00000520016.1|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr9_+_35673853_35673905	0.885492	GLI3	ENST00000378357.4|CA9|ENSG00000107159.8|carbonic anhydrase IX
hg19_v2_chr2_+_241625749_241625758	0.868215	GLI3	ENST00000407635.2|AC011298.2|ENSG00000219159.3|AC011298.2
hg19_v2_chr11_-_88070920_88070955	0.863235	GLI3	ENST00000524463.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000227266.5|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr18_+_59992514_59992525	0.861945	GLI3	ENST00000269485.7|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chrX_+_37545012_37545064	0.857332	GLI3	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr16_+_3115611_3115813	0.855148	GLI3	ENST00000530890.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000444393.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000533097.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000008180.9|IL32|ENSG00000008517.12|interleukin 32 	ENST00000396890.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525228.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548652.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525377.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000530538.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000549213.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552936.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548476.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552664.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552356.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000551513.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000382213.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548246.1|IL32|ENSG00000008517.12|interleukin 32
hg19_v2_chr8_+_21916680_21916695	0.854792	GLI3	ENST00000358242.3|DMTN|ENSG00000158856.13|dematin actin binding protein 	ENST00000415253.1|DMTN|ENSG00000158856.13|dematin actin binding protein
hg19_v2_chr22_-_20255212_20255212	0.848745	GLI3	ENST00000416372.1|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr19_+_18284477_18284667	0.841482	GLI3	ENST00000407280.3|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr1_+_156123318_156123358	0.83739	GLI3	ENST00000368285.3|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr6_-_46703430_46703465	0.826703	GLI3	ENST00000537365.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr15_+_45422178_45422216	0.82301	GLI3	ENST00000389037.3|DUOX1|ENSG00000137857.13|dual oxidase 1 	ENST00000558322.1|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr8_-_17555164_17555204	0.818476	GLI3	ENST00000297488.6|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr3_-_128840604_128840993	0.818005	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr18_+_59992527_59992555	0.814876	GLI3	ENST00000586569.1|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr20_-_50808236_50808264	0.805802	GLI3	ENST00000361387.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr8_-_144660771_144660825	0.805015	GLI3	ENST00000449291.2|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1
hg19_v2_chr1_+_152881014_152881031	0.793839	GLI3	ENST00000368764.3|IVL|ENSG00000163207.5|involucrin 	ENST00000392667.2|IVL|ENSG00000163207.5|involucrin
hg19_v2_chr1_+_15479054_15479073	0.78885	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr15_+_45422131_45422172	0.788728	GLI3	ENST00000321429.4|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr14_-_94857004_94857030	0.787706	GLI3	ENST00000557492.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000448921.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000437397.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000355814.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000393088.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr3_-_196756646_196756725	0.772726	GLI3	ENST00000439320.1|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296351.4|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296350.5|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
hg19_v2_chr20_+_49348081_49348096	0.770666	GLI3	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr9_-_5304432_5304719	0.753134	GLI3	ENST00000416837.1|RLN2|ENSG00000107014.7|relaxin 2 	ENST00000308420.3|RLN2|ENSG00000107014.7|relaxin 2
hg19_v2_chr1_+_43735646_43735665	0.737004	GLI3	ENST00000439858.1|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr1_+_43735678_43735696	0.73161	GLI3	ENST00000432792.2|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr14_-_94856951_94856979	0.727538	GLI3	ENST00000553327.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000556955.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000557118.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000440909.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr1_+_11724167_11724197	0.71959	GLI3	ENST00000376753.4|FBXO6|ENSG00000116663.6|F-box protein 6
hg19_v2_chr3_+_136537911_136538003	0.714717	GLI3	ENST00000393079.3|SLC35G2|ENSG00000168917.8|solute carrier family 35, member G2
hg19_v2_chrX_-_78622805_78622877	0.713869	GLI3	ENST00000373298.2|ITM2A|ENSG00000078596.6|integral membrane protein 2A
hg19_v2_chr1_+_15480197_15480285	0.707689	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr20_+_62185491_62185539	0.700904	GLI3	ENST00000370097.1|C20orf195|ENSG00000125531.5|chromosome 20 open reading frame 195
hg19_v2_chr3_+_186648307_186648375	0.695319	GLI3	ENST00000457772.2|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 	ENST00000455441.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 	ENST00000427315.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr1_-_153433120_153433177	0.692045	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr17_+_15848231_15848231	0.685695	GLI3	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr19_+_41281416_41281452	0.684257	GLI3	ENST00000597140.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr19_-_2041159_2041206	0.678421	GLI3	ENST00000589441.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr16_+_30194916_30194955	0.676847	GLI3	ENST00000570045.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000565497.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000570244.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr1_+_15479021_15479053	0.676521	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr6_+_43739697_43739752	0.675301	GLI3	ENST00000230480.6|VEGFA|ENSG00000112715.16|vascular endothelial growth factor A
hg19_v2_chr7_-_108096822_108096889	0.670348	GLI3	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr4_-_48908737_48908799	0.666304	GLI3	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr15_+_81591757_81591780	0.660771	GLI3	ENST00000558332.1|IL16|ENSG00000172349.12|interleukin 16
hg19_v2_chr6_-_134373732_134373795	0.650496	GLI3	ENST00000275230.5|SLC2A12|ENSG00000146411.5|solute carrier family 2 (facilitated glucose transporter), member 12
hg19_v2_chr20_-_6103666_6103737	0.650161	GLI3	ENST00000536936.1|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr7_-_24797546_24797732	0.634858	GLI3	ENST00000414428.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000419307.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000342947.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr10_-_105615164_105615323	0.631316	GLI3	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr19_+_41281282_41281363	0.62085	GLI3	ENST00000263369.3|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr11_-_88070896_88070917	0.619888	GLI3	ENST00000529974.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000527018.1|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr20_-_1306351_1306367	0.610254	GLI3	ENST00000381812.1|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr19_+_41281060_41281169	0.607465	GLI3	ENST00000594436.1|MIA|ENSG00000261857.2|melanoma inhibitory activity 	ENST00000597784.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr4_-_89080003_89080075	0.605482	GLI3	ENST00000237612.3|ABCG2|ENSG00000118777.6|ATP-binding cassette, sub-family G (WHITE), member 2
hg19_v2_chrX_+_51149767_51149829	0.602623	GLI3	ENST00000342995.2|CXorf67|ENSG00000187690.2|chromosome X open reading frame 67
hg19_v2_chr6_-_33756867_33756950	0.594712	GLI3	ENST00000293760.5|LEMD2|ENSG00000161904.7|LEM domain containing 2
hg19_v2_chr5_+_65892174_65892229	0.5826	GLI3	ENST00000404260.3|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000403625.2|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000406374.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr1_+_40420802_40420836	0.580892	GLI3	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr14_-_92302784_92302805	0.580061	GLI3	ENST00000340892.5|TC2N|ENSG00000165929.8|tandem C2 domains, nuclear 	ENST00000360594.5|TC2N|ENSG00000165929.8|tandem C2 domains, nuclear
hg19_v2_chr1_-_62785054_62785125	0.577842	GLI3	ENST00000371153.4|KANK4|ENSG00000132854.14|KN motif and ankyrin repeat domains 4
hg19_v2_chr19_-_35981358_35981433	0.576224	GLI3	ENST00000484218.2|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein 	ENST00000338897.3|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein
hg19_v2_chr8_+_110374683_110374759	0.571105	GLI3	ENST00000378402.5|PKHD1L1|ENSG00000205038.7|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1
hg19_v2_chr2_-_241080069_241080082	0.563238	GLI3	ENST00000319460.1|OTOS|ENSG00000178602.3|otospiralin
hg19_v2_chr20_-_1306391_1306513	0.560971	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr11_+_121461097_121461128	0.556166	GLI3	ENST00000527934.1|SORL1|ENSG00000137642.8|sortilin-related receptor, L(DLR class) A repeats containing
hg19_v2_chr12_-_54778471_54778528	0.55303	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000394313.2|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000547210.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr12_+_7055767_7055804	0.552406	GLI3	ENST00000447931.2|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6
hg19_v2_chr2_+_131769256_131769328	0.54964	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr7_-_108096765_108096784	0.534124	GLI3	ENST00000379024.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000351718.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr19_+_45417812_45417869	0.533542	GLI3	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr1_+_13910194_13910339	0.532451	GLI3	ENST00000376057.4|PDPN|ENSG00000162493.12|podoplanin 	ENST00000510906.1|PDPN|ENSG00000162493.12|podoplanin
hg19_v2_chr4_-_48908822_48908845	0.524425	GLI3	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr18_+_11752040_11752117	0.52111	GLI3	ENST00000423027.3|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr3_-_48470838_48470872	0.517889	GLI3	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr17_-_39274606_39274626	0.517544	GLI3	ENST00000391413.2|KRTAP4-11|ENSG00000212721.2|keratin associated protein 4-11
hg19_v2_chr12_+_57984965_57985059	0.515578	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr4_-_48908805_48908821	0.502158	GLI3	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr1_-_1356628_1356678	0.487607	GLI3	ENST00000442470.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65 	ENST00000537107.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr12_+_113354341_113354422	0.479367	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr1_-_38273840_38273888	0.47744	GLI3	ENST00000373044.2|YRDC|ENSG00000196449.3|yrdC N(6)-threonylcarbamoyltransferase domain containing
hg19_v2_chr8_-_17533838_17533865	0.473756	GLI3	ENST00000400046.1|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr19_-_16653226_16653275	0.472146	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr21_-_27945562_27945618	0.471409	GLI3	ENST00000299340.4|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1 	ENST00000435845.2|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1
hg19_v2_chr17_-_4463856_4463896	0.463581	GLI3	ENST00000574584.1|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6 	ENST00000381550.3|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6 	ENST00000301395.3|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6
hg19_v2_chr16_+_2521500_2521514	0.463188	GLI3	ENST00000293973.1|NTN3|ENSG00000162068.1|netrin 3
hg19_v2_chr16_+_27325202_27325313	0.460524	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chrX_+_106449862_106449880	0.458765	GLI3	ENST00000372453.3|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3 	ENST00000535523.1|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3
hg19_v2_chr6_-_105627735_105627917	0.45409	GLI3	ENST00000254765.3|POPDC3|ENSG00000132429.5|popeye domain containing 3
hg19_v2_chr4_-_38666430_38666526	0.444998	GLI3	ENST00000436901.1|AC021860.1|ENSG00000196355.2|Uncharacterized protein
hg19_v2_chr19_+_45417921_45417970	0.443578	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr19_-_51472031_51472047	0.442549	GLI3	ENST00000391808.1|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chrX_-_100914781_100914876	0.442191	GLI3	ENST00000431597.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000458024.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000413506.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000440675.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000328766.5|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000356824.4|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2
hg19_v2_chr12_-_125348329_125348419	0.43999	GLI3	ENST00000546215.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000415380.2|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000261693.6|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000376788.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000545493.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr2_+_192109911_192110170	0.438244	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr12_-_125348448_125348472	0.43817	GLI3	ENST00000339570.5|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr19_-_16653325_16653358	0.43787	GLI3	ENST00000546361.2|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr19_+_45417504_45417589	0.437581	GLI3	ENST00000588750.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000588802.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr20_-_22566089_22566097	0.434692	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr2_+_238768187_238768275	0.43463	GLI3	ENST00000254661.4|RAMP1|ENSG00000132329.6|receptor (G protein-coupled) activity modifying protein 1 	ENST00000409726.1|RAMP1|ENSG00000132329.6|receptor (G protein-coupled) activity modifying protein 1
hg19_v2_chr20_+_55204351_55204377	0.430674	GLI3	ENST00000201031.2|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr9_+_124413873_124413969	0.425594	GLI3	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr17_+_38333263_38333368	0.423742	GLI3	ENST00000456989.2|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000543876.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000544503.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000264644.6|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000538884.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1
hg19_v2_chr7_-_24797032_24797162	0.423502	GLI3	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr19_-_11689752_11689801	0.421118	GLI3	ENST00000592659.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000592828.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000218758.5|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000412435.2|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant
hg19_v2_chr17_+_7531281_7531320	0.418468	GLI3	ENST00000575729.1|SHBG|ENSG00000129214.10|sex hormone-binding globulin 	ENST00000340624.5|SHBG|ENSG00000129214.10|sex hormone-binding globulin
hg19_v2_chr8_-_145331153_145331153	0.417536	GLI3	ENST00000377412.4|KM-PA-2|ENSG00000204775.4|KM-PA-2 protein; Uncharacterized protein
hg19_v2_chr14_+_105147464_105147523	0.416951	GLI3	ENST00000540171.2|RP11-982M15.6|ENSG00000256050.2|RP11-982M15.6
hg19_v2_chr12_-_323689_323719	0.41282	GLI3	ENST00000428720.1|SLC6A12|ENSG00000111181.8|solute carrier family 6 (neurotransmitter transporter), member 12
hg19_v2_chr19_+_38810447_38810529	0.409848	GLI3	ENST00000263372.3|KCNK6|ENSG00000099337.3|potassium channel, subfamily K, member 6
hg19_v2_chr19_-_2050852_2050895	0.400184	GLI3	ENST00000541165.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000591601.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr6_-_17987694_17987913	0.397244	GLI3	ENST00000378814.5|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378843.2|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378826.2|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000378816.5|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000259711.6|KIF13A|ENSG00000137177.14|kinesin family member 13A 	ENST00000502704.1|KIF13A|ENSG00000137177.14|kinesin family member 13A
hg19_v2_chr7_-_112430427_112430478	0.396361	GLI3	ENST00000449743.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000441474.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000454074.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000447395.1|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr17_-_79620721_79620767	0.393522	GLI3	ENST00000571004.1|PDE6G|ENSG00000185527.7|phosphodiesterase 6G, cGMP-specific, rod, gamma
hg19_v2_chr1_-_205782304_205782332	0.393206	GLI3	ENST00000367137.3|SLC41A1|ENSG00000133065.6|solute carrier family 41 (magnesium transporter), member 1
hg19_v2_chr12_+_7055631_7055748	0.392947	GLI3	ENST00000543115.1|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6 	ENST00000399448.1|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6
hg19_v2_chr9_-_5339873_5339881	0.385517	GLI3	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr14_-_21566731_21566836	0.381159	GLI3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr19_+_45418067_45418126	0.381159	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr22_+_31644388_31644473	0.37929	GLI3	ENST00000333611.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000340552.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2
hg19_v2_chr2_-_96781984_96781984	0.377443	GLI3	ENST00000409345.3|ADRA2B|ENSG00000222040.3|adrenoceptor alpha 2B
hg19_v2_chr19_-_20844343_20844351	0.376151	GLI3	ENST00000595405.1|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr2_+_238767517_238767539	0.375007	GLI3	ENST00000404910.2|RAMP1|ENSG00000132329.6|receptor (G protein-coupled) activity modifying protein 1
hg19_v2_chr19_-_38746979_38747050	0.373396	GLI3	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr8_+_103563792_103563808	0.372804	GLI3	ENST00000285402.3|ODF1|ENSG00000155087.3|outer dense fiber of sperm tails 1
hg19_v2_chr20_-_50722183_50722217	0.371863	GLI3	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr21_-_38445470_38445491	0.367945	GLI3	ENST00000399098.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr20_-_22565101_22565223	0.36661	GLI3	ENST00000419308.2|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr5_+_6583380_6583421	0.365733	GLI3	ENST00000507582.1|LINC01018|ENSG00000250056.1|long intergenic non-protein coding RNA 1018
hg19_v2_chr3_-_59035673_59035810	0.36562	GLI3	ENST00000491845.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000472469.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000471288.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000295966.7|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67
hg19_v2_chr1_-_161014731_161014788	0.364476	GLI3	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr4_-_7069760_7069924	0.362016	GLI3	ENST00000264954.4|GRPEL1|ENSG00000109519.8|GrpE-like 1, mitochondrial (E. coli)
hg19_v2_chr15_-_76005170_76005197	0.360969	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg19_v2_chr8_-_142011036_142011127	0.358174	GLI3	ENST00000520892.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr1_-_20834586_20834656	0.355647	GLI3	ENST00000264198.3|MUL1|ENSG00000090432.5|mitochondrial E3 ubiquitin protein ligase 1
hg19_v2_chr12_-_57410304_57410325	0.350812	GLI3	ENST00000441881.1|TAC3|ENSG00000166863.7|tachykinin 3 	ENST00000458521.2|TAC3|ENSG00000166863.7|tachykinin 3
hg19_v2_chr16_-_88717482_88717560	0.349995	GLI3	ENST00000261623.3|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr14_-_106781017_106781017	0.347006	GLI3	ENST00000390612.2|IGHV4-28|ENSG00000211952.2|immunoglobulin heavy variable 4-28
hg19_v2_chr16_-_84538218_84538364	0.345524	GLI3	ENST00000562447.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000565765.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000535580.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000343629.6|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1
hg19_v2_chr7_+_42971799_42971988	0.344758	GLI3	ENST00000223324.2|MRPL32|ENSG00000106591.3|mitochondrial ribosomal protein L32
hg19_v2_chr8_-_86290333_86290348	0.343753	GLI3	ENST00000521846.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523022.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000524324.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519991.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000520663.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517590.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522579.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522814.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522662.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523858.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519129.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr19_-_3869012_3869041	0.337004	GLI3	ENST00000592398.1|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000262961.4|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000439086.2|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2
hg19_v2_chr16_-_11681316_11681419	0.335629	GLI3	ENST00000571688.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr4_+_74735102_74735121	0.334652	GLI3	ENST00000395761.3|CXCL1|ENSG00000163739.4|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
hg19_v2_chr3_-_53080047_53080103	0.334422	GLI3	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr14_+_93118813_93118870	0.33394	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.11|Ras and Rab interactor 3
hg19_v2_chr7_+_37960163_37960291	0.32904	GLI3	ENST00000199448.4|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000559325.1|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000423717.1|EPDR1|ENSG00000086289.7|ependymin related 1
hg19_v2_chr1_-_153538292_153538342	0.328724	GLI3	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr20_-_36793663_36793735	0.323439	GLI3	ENST00000536701.1|TGM2|ENSG00000198959.7|transglutaminase 2 	ENST00000536724.1|TGM2|ENSG00000198959.7|transglutaminase 2
hg19_v2_chr2_+_192110199_192110254	0.322994	GLI3	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr15_-_65067773_65067796	0.322424	GLI3	ENST00000300069.4|RBPMS2|ENSG00000166831.4|RNA binding protein with multiple splicing 2
hg19_v2_chr2_-_171627269_171627285	0.322037	GLI3	ENST00000442456.1|AC007405.4|ENSG00000234350.1|AC007405.4
hg19_v2_chr4_+_72052964_72053013	0.321775	GLI3	ENST00000264485.5|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000425175.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr2_+_159825143_159825190	0.318588	GLI3	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr13_-_46756351_46756459	0.317593	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr16_+_89894875_89894907	0.316904	GLI3	ENST00000393062.2|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr16_+_725650_725716	0.314877	GLI3	ENST00000352681.3|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila) 	ENST00000561556.1|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila)
hg19_v2_chr8_-_38008783_38008783	0.314825	GLI3	ENST00000276449.4|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
hg19_v2_chr16_+_84682108_84682218	0.314131	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chr11_+_68451943_68451986	0.313914	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr3_+_184081175_184081208	0.312922	GLI3	ENST00000452961.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H 	ENST00000296223.3|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr6_-_20212630_20212726	0.310752	GLI3	ENST00000324607.7|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1 	ENST00000541730.1|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1 	ENST00000536798.1|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1
hg19_v2_chr4_+_15480828_15480868	0.30794	GLI3	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr19_+_35491174_35491242	0.307707	GLI3	ENST00000317991.5|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000504615.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr1_-_1051736_1051754	0.307447	GLI3	ENST00000448924.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000294576.5|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000437760.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000462097.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000475119.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr3_+_184081213_184081224	0.305368	GLI3	ENST00000429568.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chrX_-_103268259_103268259	0.304658	GLI3	ENST00000217926.5|H2BFWT|ENSG00000123569.7|H2B histone family, member W, testis-specific
hg19_v2_chr16_-_2059797_2059837	0.303599	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr19_-_2051223_2051252	0.303266	GLI3	ENST00000309340.7|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589534.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000250896.3|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589509.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr19_+_15904761_15904761	0.302606	GLI3	ENST00000308940.8|OR10H5|ENSG00000172519.8|olfactory receptor, family 10, subfamily H, member 5
hg19_v2_chr8_+_133931648_133931685	0.302564	GLI3	ENST00000519178.1|TG|ENSG00000042832.7|thyroglobulin 	ENST00000542445.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr16_+_84209738_84209748	0.302244	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr1_+_207226574_207226656	0.302167	GLI3	ENST00000367080.3|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 	ENST00000367079.2|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
hg19_v2_chr4_+_72053017_72053044	0.300245	GLI3	ENST00000351898.6|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr8_-_28243590_28243660	0.300105	GLI3	ENST00000523095.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000522795.1|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr1_+_220701740_220701899	0.299351	GLI3	ENST00000366917.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr16_-_11681023_11681145	0.296013	GLI3	ENST00000570904.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574701.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr12_-_57522813_57522883	0.294921	GLI3	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr11_-_104817919_104817919	0.293677	GLI3	ENST00000533252.1|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr2_+_96991935_96991957	0.293063	GLI3	ENST00000361124.4|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1 	ENST00000420728.1|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1 	ENST00000542887.1|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1
hg19_v2_chr6_+_116601265_116601288	0.29292	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr1_-_153538011_153538030	0.292818	GLI3	ENST00000368707.4|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr19_+_39897453_39897498	0.292321	GLI3	ENST00000597629.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000248673.3|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594045.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594442.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein
hg19_v2_chr3_+_184081137_184081155	0.292058	GLI3	ENST00000443489.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr19_+_35491330_35491373	0.291099	GLI3	ENST00000411896.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000424536.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr8_-_144416965_144417066	0.289358	GLI3	ENST00000523676.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000519591.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000522043.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000329245.4|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial
hg19_v2_chr19_+_36208877_36208921	0.289358	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr11_+_3819049_3819202	0.286765	GLI3	ENST00000396986.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000300730.6|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532535.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396993.4|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396991.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532523.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000459679.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464261.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464906.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464441.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2
hg19_v2_chr19_-_3480540_3480555	0.284781	GLI3	ENST00000215531.4|C19orf77|ENSG00000095932.5|chromosome 19 open reading frame 77
hg19_v2_chr1_+_24117627_24117659	0.284282	GLI3	ENST00000400061.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr19_+_10216899_10217095	0.282676	GLI3	ENST00000428358.1|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000253107.7|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000556468.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000393793.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr2_+_128403720_128403747	0.282502	GLI3	ENST00000272644.3|GPR17|ENSG00000144230.12|G protein-coupled receptor 17
hg19_v2_chr19_+_45349630_45349783	0.280794	GLI3	ENST00000252483.5|PVRL2|ENSG00000130202.5|poliovirus receptor-related 2 (herpesvirus entry mediator B)
hg19_v2_chr16_-_88717423_88717469	0.278432	GLI3	ENST00000568278.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000569359.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000567174.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr22_+_24990746_24990781	0.278411	GLI3	ENST00000456869.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000411974.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr1_-_31902614_31902614	0.277808	GLI3	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr5_-_95297534_95297563	0.277402	GLI3	ENST00000513343.1|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2 	ENST00000431061.2|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr8_+_22436635_22436663	0.276246	GLI3	ENST00000452226.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397760.4|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000339162.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397761.2|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr1_-_1356719_1356824	0.275119	GLI3	ENST00000520296.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr12_-_57030115_57030177	0.273072	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr2_-_74779744_74779774	0.272109	GLI3	ENST00000409249.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr19_+_676385_676403	0.268464	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr8_-_144660485_144660521	0.26559	GLI3	ENST00000276844.7|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1 	ENST00000340490.3|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1 	ENST00000435154.3|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1 	ENST00000426292.3|NAPRT1|ENSG00000147813.11|nicotinate phosphoribosyltransferase domain containing 1
hg19_v2_chr4_-_46391367_46391436	0.265464	GLI3	ENST00000503806.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000356504.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000514090.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000506961.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr7_-_128045984_128046026	0.264833	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr11_+_69061594_69061635	0.263842	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr1_-_1051455_1051495	0.263589	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr7_+_149412094_149412148	0.259955	GLI3	ENST00000255992.10|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1 	ENST00000319551.8|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chr19_+_35396219_35396233	0.25935	GLI3	ENST00000595783.1|CTC-523E23.6|ENSG00000269037.1|CTC-523E23.6
hg19_v2_chrX_+_30233668_30233698	0.258158	GLI3	ENST00000378988.4|MAGEB2|ENSG00000099399.5|melanoma antigen family B, 2
hg19_v2_chr5_+_161494770_161494787	0.25765	GLI3	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr17_+_27071002_27071103	0.256549	GLI3	ENST00000262395.5|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000422344.1|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000444415.3|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000262396.6|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4
hg19_v2_chr19_+_51152702_51152702	0.256384	GLI3	ENST00000425202.1|C19orf81|ENSG00000235034.2|chromosome 19 open reading frame 81
hg19_v2_chr17_-_6735012_6735030	0.255287	GLI3	ENST00000535086.1|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr14_+_71374433_71374456	0.254349	GLI3	ENST00000439984.3|PCNX|ENSG00000100731.11|pecanex homolog (Drosophila)
hg19_v2_chr4_-_6692246_6692274	0.253576	GLI3	ENST00000499502.2|RP11-539L10.2|ENSG00000246526.2|RP11-539L10.2
hg19_v2_chr5_+_176513868_176513893	0.253288	GLI3	ENST00000292408.4|FGFR4|ENSG00000160867.10|fibroblast growth factor receptor 4
hg19_v2_chrX_-_8769378_8769424	0.253088	GLI3	ENST00000543214.1|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A 	ENST00000381003.3|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A
hg19_v2_chr4_-_46391805_46391924	0.252806	GLI3	ENST00000540012.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr1_-_40349106_40349184	0.251155	GLI3	ENST00000545233.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537440.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537223.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000541099.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000441669.2|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000544981.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000316891.5|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000372818.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1
hg19_v2_chr5_+_148960931_148961073	0.250888	GLI3	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr11_-_123756334_123756379	0.249248	GLI3	ENST00000528595.1|TMEM225|ENSG00000204300.2|transmembrane protein 225 	ENST00000375026.2|TMEM225|ENSG00000204300.2|transmembrane protein 225
hg19_v2_chr3_+_44626446_44626477	0.248721	GLI3	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr16_+_57728701_57728748	0.248244	GLI3	ENST00000569375.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000360716.3|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000569167.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000394337.4|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000563126.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000336825.8|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135
hg19_v2_chr14_-_106805716_106805716	0.247314	GLI3	ENST00000438142.2|IGHV4-31|ENSG00000231475.2|immunoglobulin heavy variable 4-31
hg19_v2_chr7_-_105162652_105162709	0.247124	GLI3	ENST00000356362.2|PUS7|ENSG00000091127.9|pseudouridylate synthase 7 homolog (S. cerevisiae) 	ENST00000469408.1|PUS7|ENSG00000091127.9|pseudouridylate synthase 7 homolog (S. cerevisiae)
hg19_v2_chr6_+_33172407_33172419	0.246546	GLI3	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr10_+_49892904_49892925	0.245926	GLI3	ENST00000360890.2|WDFY4|ENSG00000128815.13|WDFY family member 4
hg19_v2_chr17_-_39324424_39324474	0.245912	GLI3	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chr19_+_49713991_49714040	0.245702	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.11|transient receptor potential cation channel, subfamily M, member 4
hg19_v2_chr10_+_106028923_106028956	0.245157	GLI3	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr1_+_204839959_204839996	0.244429	GLI3	ENST00000404076.1|NFASC|ENSG00000163531.11|neurofascin
hg19_v2_chr7_+_130131907_130131947	0.243756	GLI3	ENST00000223215.4|MEST|ENSG00000106484.10|mesoderm specific transcript 	ENST00000437945.1|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr3_-_8686479_8686486	0.241759	GLI3	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chrX_-_130037198_130037234	0.241615	GLI3	ENST00000370935.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000338144.3|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000394363.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr16_-_2031464_2031550	0.241102	GLI3	ENST00000356120.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1 	ENST00000354249.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1
hg19_v2_chr14_+_94577074_94577161	0.240789	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr17_-_3375033_3375123	0.240745	GLI3	ENST00000268981.5|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000397168.3|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000572969.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000355380.4|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000571553.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000574797.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22 	ENST00000575375.1|SPATA22|ENSG00000141255.8|spermatogenesis associated 22
hg19_v2_chr3_+_4535025_4535040	0.240739	GLI3	ENST00000302640.8|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000354582.6|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000423119.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000357086.4|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000456211.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr3_+_38495333_38495422	0.239405	GLI3	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr12_+_50017327_50017403	0.239139	GLI3	ENST00000261897.1|PRPF40B|ENSG00000110844.9|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
hg19_v2_chr1_+_44440575_44440646	0.238383	GLI3	ENST00000532642.1|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000236067.4|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000471859.2|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
hg19_v2_chr3_+_42190714_42190787	0.237657	GLI3	ENST00000449246.1|TRAK1|ENSG00000182606.10|trafficking protein, kinesin binding 1
hg19_v2_chr19_-_44285401_44285446	0.236545	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr14_-_106330458_106330479	0.236145	GLI3	ENST00000461719.1|IGHJ4|ENSG00000240041.1|immunoglobulin heavy joining 4
hg19_v2_chr2_+_228736321_228736332	0.235543	GLI3	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr20_+_32319463_32319463	0.235244	GLI3	ENST00000342427.2|ZNF341|ENSG00000131061.9|zinc finger protein 341 	ENST00000375200.1|ZNF341|ENSG00000131061.9|zinc finger protein 341
hg19_v2_chr1_-_11865982_11866005	0.234641	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr2_-_136875712_136875735	0.234439	GLI3	ENST00000241393.3|CXCR4|ENSG00000121966.6|chemokine (C-X-C motif) receptor 4
hg19_v2_chr8_+_146052849_146053003	0.233443	GLI3	ENST00000532777.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000325241.6|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000446747.2|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000525266.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000544249.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000325217.5|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000533314.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000527218.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000529819.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000528372.1|ZNF7|ENSG00000147789.11|zinc finger protein 7
hg19_v2_chr21_-_38445011_38445200	0.233119	GLI3	ENST00000464265.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P 	ENST00000399102.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr20_+_44098346_44098373	0.23277	GLI3	ENST00000372676.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr17_-_42031300_42031313	0.232429	GLI3	ENST00000592796.1|PYY|ENSG00000131096.6|peptide YY
hg19_v2_chr16_-_4466622_4466665	0.231718	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr17_-_26127525_26127556	0.23169	GLI3	ENST00000313735.6|NOS2|ENSG00000007171.12|nitric oxide synthase 2, inducible
hg19_v2_chr1_-_11024258_11024258	0.231674	GLI3	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr21_-_46340884_46341048	0.230645	GLI3	ENST00000302347.5|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000517819.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr16_-_2908155_2908178	0.227895	GLI3	ENST00000571228.1|PRSS22|ENSG00000005001.5|protease, serine, 22 	ENST00000161006.3|PRSS22|ENSG00000005001.5|protease, serine, 22
hg19_v2_chr1_+_154947126_154947147	0.22747	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr8_-_21771182_21771208	0.226448	GLI3	ENST00000523932.1|DOK2|ENSG00000147443.8|docking protein 2, 56kDa 	ENST00000544659.1|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr11_+_68228186_68228281	0.226274	GLI3	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr19_+_58962971_58963014	0.226195	GLI3	ENST00000336614.4|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000545523.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599194.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000598244.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599193.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000594214.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000391696.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B
hg19_v2_chr1_+_167691185_167691188	0.225243	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr16_+_4526341_4526460	0.225201	GLI3	ENST00000458134.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000219700.6|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000575120.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000572812.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000574466.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000576827.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000570445.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr3_+_130612803_130612877	0.224239	GLI3	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr6_+_31465849_31465863	0.222674	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr11_-_74442430_74442481	0.222603	GLI3	ENST00000376332.3|CHRDL2|ENSG00000054938.11|chordin-like 2
hg19_v2_chr1_+_154947148_154947175	0.221149	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr11_+_64216546_64216546	0.220702	GLI3	ENST00000316124.2|AP003774.4|ENSG00000181908.4|HCG1652096, isoform CRA_a; Uncharacterized protein; cDNA FLJ37045 fis, clone BRACE2012185
hg19_v2_chr5_+_173416162_173416187	0.219057	GLI3	ENST00000340147.6|C5orf47|ENSG00000185056.9|chromosome 5 open reading frame 47
hg19_v2_chr8_+_145133493_145133551	0.218142	GLI3	ENST00000316052.5|EXOSC4|ENSG00000178896.6|exosome component 4 	ENST00000525936.1|EXOSC4|ENSG00000178896.6|exosome component 4
hg19_v2_chr9_-_98279241_98279339	0.218014	GLI3	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr5_-_179636153_179636220	0.218008	GLI3	ENST00000361132.4|RASGEF1C|ENSG00000146090.11|RasGEF domain family, member 1C
hg19_v2_chr10_+_105156364_105156448	0.217735	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chr8_-_21771214_21771371	0.217241	GLI3	ENST00000276420.4|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr6_+_31465892_31465937	0.216349	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr1_+_180897269_180897295	0.216222	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr20_+_42984330_42984445	0.216208	GLI3	ENST00000316673.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609795.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000457232.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609262.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr15_+_75498355_75498390	0.215969	GLI3	ENST00000567617.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr1_-_59012365_59012474	0.215553	GLI3	ENST00000456980.1|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase 	ENST00000482274.2|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase 	ENST00000453710.1|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase 	ENST00000419242.1|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase 	ENST00000358603.2|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase 	ENST00000371226.3|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase 	ENST00000426139.1|OMA1|ENSG00000162600.7|OMA1 zinc metallopeptidase
hg19_v2_chr15_-_102192567_102192597	0.21534	GLI3	ENST00000333202.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000428002.2|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000559107.1|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000347970.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3
hg19_v2_chr16_-_2059748_2059777	0.215286	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr12_-_8218997_8219067	0.213573	GLI3	ENST00000307637.4|C3AR1|ENSG00000171860.4|complement component 3a receptor 1
hg19_v2_chr10_-_77161650_77161664	0.213194	GLI3	ENST00000372524.4|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr22_+_29279552_29279586	0.213024	GLI3	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr3_-_192635943_192635955	0.212892	GLI3	ENST00000392452.2|MB21D2|ENSG00000180611.6|Mab-21 domain containing 2
hg19_v2_chr7_-_112430647_112430776	0.211917	GLI3	ENST00000312814.6|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr1_+_214163033_214163073	0.211793	GLI3	ENST00000607425.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr17_-_39296739_39296798	0.211512	GLI3	ENST00000345847.4|KRTAP4-6|ENSG00000198090.3|keratin associated protein 4-6
hg19_v2_chr16_-_4465886_4465906	0.210941	GLI3	ENST00000539968.1|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr1_-_155942086_155942145	0.210752	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr17_-_6735035_6735080	0.21056	GLI3	ENST00000338694.2|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr4_-_185395672_185395734	0.209671	GLI3	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr1_-_40105617_40105617	0.209613	GLI3	ENST00000372852.3|HEYL|ENSG00000163909.6|hes-related family bHLH transcription factor with YRPW motif-like
hg19_v2_chr8_-_102217515_102217719	0.20947	GLI3	ENST00000520347.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000523922.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000520984.1|ZNF706|ENSG00000120963.7|zinc finger protein 706
hg19_v2_chr2_+_228736335_228736397	0.207351	GLI3	ENST00000440997.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1 	ENST00000545118.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr3_+_153839149_153839251	0.207324	GLI3	ENST00000465093.1|ARHGEF26|ENSG00000114790.8|Rho guanine nucleotide exchange factor (GEF) 26 	ENST00000465817.1|ARHGEF26|ENSG00000114790.8|Rho guanine nucleotide exchange factor (GEF) 26
hg19_v2_chr3_+_47422485_47422562	0.206702	GLI3	ENST00000431726.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000456221.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000265562.4|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23
hg19_v2_chr22_+_18834324_18834324	0.20517	GLI3	ENST00000342005.4|AC008132.13|ENSG00000161103.7|Uncharacterized protein
hg19_v2_chr17_+_40714092_40714205	0.20505	GLI3	ENST00000420359.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000449624.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585811.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585909.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000586771.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000421097.2|COASY|ENSG00000068120.10|CoA synthase 	ENST00000591779.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587858.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587214.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587157.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000590958.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000393818.2|COASY|ENSG00000068120.10|CoA synthase
hg19_v2_chr9_-_34637718_34637791	0.204647	GLI3	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chr10_-_113943447_113943536	0.20428	GLI3	ENST00000369425.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000348367.4|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000423155.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial
hg19_v2_chr12_-_13529642_13529664	0.203909	GLI3	ENST00000318426.2|C12orf36|ENSG00000180861.5|chromosome 12 open reading frame 36
hg19_v2_chr21_-_46348694_46348788	0.202705	GLI3	ENST00000355153.4|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397850.2|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr1_-_204380919_204380953	0.200787	GLI3	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr12_-_111806892_111806925	0.200489	GLI3	ENST00000547710.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000549321.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000361483.3|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000392658.5|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A
hg19_v2_chr8_-_57906362_57906452	0.200185	GLI3	ENST00000262644.4|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chr1_-_11007927_11007927	0.198801	GLI3	ENST00000468348.1|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr12_+_32112340_32112358	0.198584	GLI3	ENST00000540924.1|KIAA1551|ENSG00000174718.7|KIAA1551 	ENST00000312561.4|KIAA1551|ENSG00000174718.7|KIAA1551
hg19_v2_chr12_+_29542557_29542671	0.19818	GLI3	ENST00000550906.1|OVCH1-AS1|ENSG00000257599.1|OVCH1 antisense RNA 1
hg19_v2_chr2_-_47382414_47382431	0.198151	GLI3	ENST00000294947.2|C2orf61|ENSG00000239605.4|chromosome 2 open reading frame 61
hg19_v2_chr1_-_85040090_85040168	0.197938	GLI3	ENST00000370630.5|CTBS|ENSG00000117151.8|chitobiase, di-N-acetyl-
hg19_v2_chr14_+_105046094_105046111	0.197926	GLI3	ENST00000331952.2|C14orf180|ENSG00000184601.6|chromosome 14 open reading frame 180
hg19_v2_chr7_+_130126012_130126069	0.196355	GLI3	ENST00000341441.5|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr20_-_50808290_50808328	0.196152	GLI3	ENST00000346617.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein 	ENST00000371515.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein 	ENST00000371518.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr1_-_245134273_245134390	0.196058	GLI3	ENST00000607453.1|RP11-156E8.1|ENSG00000272195.1|Uncharacterized protein
hg19_v2_chr17_-_7017559_7017630	0.195938	GLI3	ENST00000446679.2|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2
hg19_v2_chr1_+_1551220_1551320	0.195899	GLI3	ENST00000378712.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr10_+_80027105_80027199	0.195779	GLI3	ENST00000461034.1|LINC00595|ENSG00000227136.2|long intergenic non-protein coding RNA 595 	ENST00000476909.1|LINC00595|ENSG00000227136.2|long intergenic non-protein coding RNA 595 	ENST00000459633.1|LINC00595|ENSG00000227136.2|long intergenic non-protein coding RNA 595
hg19_v2_chrX_+_55246771_55246793	0.1955	GLI3	ENST00000289619.5|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated) 	ENST00000374955.3|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated)
hg19_v2_chr19_-_19051993_19052073	0.194787	GLI3	ENST00000594794.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000355887.6|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000392351.3|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000596482.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr19_-_12886327_12886434	0.194104	GLI3	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr2_-_201936302_201936416	0.19238	GLI3	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr3_-_12200851_12200885	0.192206	GLI3	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr22_+_21319396_21319465	0.192019	GLI3	ENST00000399167.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000399163.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3 	ENST00000441376.2|AIFM3|ENSG00000183773.11|apoptosis-inducing factor, mitochondrion-associated, 3
hg19_v2_chr13_+_113548643_113548708	0.190931	GLI3	ENST00000375608.3|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr1_+_167691191_167691389	0.190692	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr3_+_15468862_15468909	0.190631	GLI3	ENST00000396842.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chr8_+_21899898_21899937	0.189815	GLI3	ENST00000518533.1|FGF17|ENSG00000158815.6|fibroblast growth factor 17 	ENST00000359441.3|FGF17|ENSG00000158815.6|fibroblast growth factor 17
hg19_v2_chr8_+_22436248_22436259	0.189766	GLI3	ENST00000308354.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr6_+_111303218_111303301	0.189396	GLI3	ENST00000441448.2|RPF2|ENSG00000197498.8|ribosome production factor 2 homolog (S. cerevisiae)
hg19_v2_chr17_-_26876350_26876417	0.18825	GLI3	ENST00000470125.1|UNC119|ENSG00000109103.7|unc-119 homolog (C. elegans)
hg19_v2_chr11_-_111383064_111383092	0.187528	GLI3	ENST00000525791.1|BTG4|ENSG00000137707.9|B-cell translocation gene 4 	ENST00000456861.2|BTG4|ENSG00000137707.9|B-cell translocation gene 4 	ENST00000356018.2|BTG4|ENSG00000137707.9|B-cell translocation gene 4
hg19_v2_chr17_-_17494972_17495037	0.186185	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr16_-_67517716_67517716	0.185838	GLI3	ENST00000290953.2|AGRP|ENSG00000159723.4|agouti related protein homolog (mouse)
hg19_v2_chr18_-_44556449_44556449	0.185585	GLI3	ENST00000330682.2|TCEB3C|ENSG00000183791.4|transcription elongation factor B polypeptide 3C (elongin A3)
hg19_v2_chr18_-_44544607_44544607	0.185137	GLI3	ENST00000591973.2|TCEB3CL2|ENSG00000266996.2|transcription elongation factor B polypeptide 3C-like 2
hg19_v2_chrX_-_101098171_101098171	0.184614	GLI3	ENST00000473265.2|NXF5|ENSG00000126952.12|nuclear RNA export factor 5
hg19_v2_chr16_+_30034655_30034722	0.18455	GLI3	ENST00000300575.2|C16orf92|ENSG00000167194.3|chromosome 16 open reading frame 92
hg19_v2_chr17_+_7788104_7788138	0.184454	GLI3	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chr19_-_49015050_49015111	0.184454	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chrX_-_53254358_53254406	0.184004	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chrX_-_48271344_48271344	0.183202	GLI3	ENST00000376884.2|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B 	ENST00000396928.1|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B
hg19_v2_chr19_-_49250054_49250166	0.183124	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1 	ENST00000332955.2|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1
hg19_v2_chr17_+_39261584_39261584	0.182958	GLI3	ENST00000391415.1|KRTAP4-9|ENSG00000212722.6|keratin associated protein 4-9
hg19_v2_chr5_-_850676_850720	0.182797	GLI3	ENST00000424784.2|ZDHHC11|ENSG00000188818.8|zinc finger, DHHC-type containing 11
hg19_v2_chr15_-_45422056_45422136	0.182753	GLI3	ENST00000267803.4|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559014.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558851.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559988.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558996.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558422.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559226.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558326.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558377.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559644.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1
hg19_v2_chr22_+_41487711_41487798	0.182384	GLI3	ENST00000263253.7|EP300|ENSG00000100393.9|E1A binding protein p300
hg19_v2_chr9_-_33264676_33264761	0.182305	GLI3	ENST00000472232.3|BAG1|ENSG00000107262.12|BCL2-associated athanogene 	ENST00000379704.2|BAG1|ENSG00000107262.12|BCL2-associated athanogene
hg19_v2_chr6_-_2903514_2903552	0.182303	GLI3	ENST00000380698.4|SERPINB9|ENSG00000170542.5|serpin peptidase inhibitor, clade B (ovalbumin), member 9
hg19_v2_chrX_-_11308598_11308610	0.182229	GLI3	ENST00000380717.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr12_+_50366620_50366735	0.182214	GLI3	ENST00000315520.5|AQP6|ENSG00000086159.8|aquaporin 6, kidney specific
hg19_v2_chr12_+_54943134_54943182	0.182181	GLI3	ENST00000243052.3|PDE1B|ENSG00000123360.7|phosphodiesterase 1B, calmodulin-dependent
hg19_v2_chr10_-_62332357_62332428	0.181823	GLI3	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr6_-_33548006_33548069	0.181802	GLI3	ENST00000374467.3|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr21_-_46330545_46330741	0.18153	GLI3	ENST00000320216.6|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397852.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr7_-_101212244_101212286	0.181482	GLI3	ENST00000451953.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007 	ENST00000434537.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007 	ENST00000437900.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007
hg19_v2_chr1_+_63788730_63788730	0.181256	GLI3	ENST00000371116.2|FOXD3|ENSG00000187140.4|forkhead box D3
hg19_v2_chr6_-_16761678_16761721	0.180494	GLI3	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr5_-_95297678_95297775	0.180422	GLI3	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr12_+_6308881_6309041	0.180306	GLI3	ENST00000382518.1|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000536586.1|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr14_-_51561784_51561854	0.18027	GLI3	ENST00000360392.4|TRIM9|ENSG00000100505.9|tripartite motif containing 9
hg19_v2_chr8_-_124253576_124253638	0.179857	GLI3	ENST00000276704.4|C8orf76|ENSG00000189376.7|chromosome 8 open reading frame 76
hg19_v2_chrY_+_25365594_25365701	0.179579	GLI3	ENST00000382449.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382440.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382306.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382434.3|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000449947.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382294.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382433.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382424.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000400493.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382431.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2
hg19_v2_chr11_-_568369_568457	0.17916	GLI3	ENST00000534540.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000528245.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000500447.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000533920.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding)
hg19_v2_chr7_+_1126437_1126458	0.179032	GLI3	ENST00000413368.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1 	ENST00000397092.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr16_+_75256507_75256511	0.178378	GLI3	ENST00000495583.1|CTRB1|ENSG00000168925.6|chymotrypsinogen B1
hg19_v2_chr18_-_44550534_44550534	0.17824	GLI3	ENST00000451265.1|TCEB3CL|ENSG00000234298.1|transcription elongation factor B polypeptide 3C-like
hg19_v2_chr11_+_59824127_59824161	0.178238	GLI3	ENST00000278865.3|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr19_+_8943074_8943074	0.178172	GLI3	ENST00000595891.1|MBD3L1|ENSG00000170948.3|methyl-CpG binding domain protein 3-like 1
hg19_v2_chr6_-_31324943_31324965	0.178015	GLI3	ENST00000412585.2|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B 	ENST00000434333.1|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B
hg19_v2_chr22_-_20004330_20004364	0.177871	GLI3	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr10_+_18948311_18948417	0.177846	GLI3	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chrX_-_48216101_48216142	0.177286	GLI3	ENST00000298396.2|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3 	ENST00000376893.3|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3
hg19_v2_chr17_-_43502987_43503004	0.177141	GLI3	ENST00000376922.2|ARHGAP27|ENSG00000159314.7|Rho GTPase activating protein 27
hg19_v2_chr7_+_89841000_89841023	0.176707	GLI3	ENST00000287908.3|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr17_+_7210898_7210918	0.176403	GLI3	ENST00000572815.1|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr11_+_13690200_13690244	0.175959	GLI3	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr1_+_160765884_160765903	0.1755	GLI3	ENST00000392203.4|LY9|ENSG00000122224.13|lymphocyte antigen 9
hg19_v2_chrY_-_25345070_25345241	0.175281	GLI3	ENST00000382510.4|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000426000.2|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000540248.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000405239.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1
hg19_v2_chr21_-_33985127_33985191	0.173164	GLI3	ENST00000290155.3|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chrX_-_9001351_9001351	0.171544	GLI3	ENST00000362066.3|FAM9B|ENSG00000177138.11|family with sequence similarity 9, member B
hg19_v2_chr19_-_19754404_19754478	0.171257	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr8_+_29952914_29953016	0.170995	GLI3	ENST00000321250.8|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000518001.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000520682.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000442880.2|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000523116.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr22_-_41258074_41258130	0.170658	GLI3	ENST00000307221.4|DNAJB7|ENSG00000172404.4|DnaJ (Hsp40) homolog, subfamily B, member 7
hg19_v2_chr17_+_4736627_4736720	0.17038	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chrY_-_21239221_21239302	0.169146	GLI3	ENST00000447937.1|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding) 	ENST00000331787.2|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding)
hg19_v2_chr22_-_38349552_38349676	0.169061	GLI3	ENST00000422191.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000249079.2|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000418863.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403305.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403026.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23
hg19_v2_chr2_-_264772_264829	0.169027	GLI3	ENST00000403658.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000402632.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000415368.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000454318.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1
hg19_v2_chr11_+_64058820_64058881	0.169	GLI3	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr10_-_112064665_112064737	0.168594	GLI3	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr7_+_89841024_89841094	0.168505	GLI3	ENST00000394626.1|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr19_+_16771936_16772072	0.16843	GLI3	ENST00000187762.2|TMEM38A|ENSG00000072954.2|transmembrane protein 38A 	ENST00000599479.1|TMEM38A|ENSG00000072954.2|transmembrane protein 38A
hg19_v2_chrX_-_151903101_151903164	0.168416	GLI3	ENST00000393900.3|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12
hg19_v2_chr11_+_576494_576521	0.168359	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr11_-_30607819_30607867	0.168199	GLI3	ENST00000448418.2|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr10_+_81466084_81466084	0.168152	GLI3	ENST00000342531.2|NUTM2B|ENSG00000188199.6|NUT family member 2B
hg19_v2_chr12_+_10365404_10365547	0.167939	GLI3	ENST00000266458.5|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000421801.2|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000544284.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545047.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000543602.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545887.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1
hg19_v2_chr12_-_48744554_48744733	0.167752	GLI3	ENST00000544117.2|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000548932.1|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000549125.1|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000301042.3|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000547026.1|ZNF641|ENSG00000167528.8|zinc finger protein 641
hg19_v2_chr1_-_40042416_40042470	0.166849	GLI3	ENST00000372857.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000372856.3|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000531243.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form) 	ENST00000451091.2|PABPC4|ENSG00000090621.9|poly(A) binding protein, cytoplasmic 4 (inducible form)
hg19_v2_chr6_+_3849584_3849631	0.166386	GLI3	ENST00000380274.1|FAM50B|ENSG00000145945.5|family with sequence similarity 50, member B 	ENST00000380272.3|FAM50B|ENSG00000145945.5|family with sequence similarity 50, member B
hg19_v2_chr16_+_9185450_9185516	0.166179	GLI3	ENST00000327827.7|C16orf72|ENSG00000182831.7|chromosome 16 open reading frame 72
hg19_v2_chr8_+_144328991_144329280	0.166146	GLI3	ENST00000520584.1|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000330701.4|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000522452.1|ZFP41|ENSG00000264668.1|ZFP41
hg19_v2_chr18_+_56530136_56530199	0.165913	GLI3	ENST00000591083.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr2_-_208031542_208031595	0.16586	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr16_+_84209539_84209585	0.165458	GLI3	ENST00000569735.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr3_-_197026152_197026203	0.165015	GLI3	ENST00000419354.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr11_-_113346111_113346125	0.164916	GLI3	ENST00000362072.3|DRD2|ENSG00000149295.9|dopamine receptor D2
hg19_v2_chr6_-_46620522_46620560	0.164	GLI3	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr7_-_150884873_150884919	0.163977	GLI3	ENST00000377867.3|ASB10|ENSG00000146926.6|ankyrin repeat and SOCS box containing 10
hg19_v2_chr1_+_179262905_179262986	0.163471	GLI3	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr10_-_52383644_52383743	0.163256	GLI3	ENST00000361781.2|SGMS1|ENSG00000198964.9|sphingomyelin synthase 1
hg19_v2_chr2_+_119981384_119981446	0.163095	GLI3	ENST00000393108.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000354888.5|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000450943.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393110.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393106.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000409811.1|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393107.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase
hg19_v2_chr4_-_170948361_170948375	0.162881	GLI3	ENST00000393702.3|MFAP3L|ENSG00000198948.7|microfibrillar-associated protein 3-like
hg19_v2_chr21_-_33984888_33984903	0.162793	GLI3	ENST00000382549.4|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59 	ENST00000540881.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr11_-_61646054_61646115	0.162673	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr19_-_19754354_19754370	0.162421	GLI3	ENST00000587238.1|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr6_-_33547975_33547999	0.162021	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr11_+_1940925_1940955	0.161443	GLI3	ENST00000453458.1|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381557.2|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381589.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381579.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381563.4|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000344578.4|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast)
hg19_v2_chr11_-_75062829_75062951	0.16072	GLI3	ENST00000393505.4|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr1_+_24117693_24117717	0.160681	GLI3	ENST00000374503.3|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374502.3|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr19_-_54693401_54693491	0.160389	GLI3	ENST00000338624.6|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr20_+_35974532_35974557	0.160061	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chr19_-_42931567_42931581	0.159649	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr1_-_36945097_36945097	0.159252	GLI3	ENST00000331941.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000418048.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000338937.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000440588.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte)
hg19_v2_chr19_-_14992264_14992264	0.159247	GLI3	ENST00000327462.2|OR7A17|ENSG00000185385.2|olfactory receptor, family 7, subfamily A, member 17
hg19_v2_chr8_+_6565854_6565942	0.15919	GLI3	ENST00000285518.6|AGPAT5|ENSG00000155189.7|1-acylglycerol-3-phosphate O-acyltransferase 5
hg19_v2_chr22_+_25003606_25003622	0.158492	GLI3	ENST00000432867.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr7_-_42971759_42971822	0.157931	GLI3	ENST00000538645.1|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2 	ENST00000445517.1|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2 	ENST00000223321.4|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2
hg19_v2_chr5_-_6633397_6633445	0.156831	GLI3	ENST00000264670.6|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2 	ENST00000539938.1|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2
hg19_v2_chr21_-_36260980_36261011	0.156528	GLI3	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chrX_+_70364667_70364721	0.15624	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr19_-_16008880_16008930	0.154622	GLI3	ENST00000011989.7|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2 	ENST00000221700.6|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2
hg19_v2_chrX_-_40506766_40506824	0.154095	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000440784.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000327877.5|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378426.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378418.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38
hg19_v2_chr3_-_125802765_125802990	0.154026	GLI3	ENST00000514891.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000512470.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000504035.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000360370.4|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000513723.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000510651.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000514333.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr18_-_12884259_12884337	0.153463	GLI3	ENST00000353319.4|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000327283.3|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr9_-_101017862_101017897	0.153366	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr1_+_44457261_44457280	0.153157	GLI3	ENST00000372318.3|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr10_+_88718314_88718388	0.152794	GLI3	ENST00000348795.4|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr12_-_322504_322551	0.152448	GLI3	ENST00000424061.2|SLC6A12|ENSG00000111181.8|solute carrier family 6 (neurotransmitter transporter), member 12
hg19_v2_chr9_-_130524695_130524736	0.152088	GLI3	ENST00000440630.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000429553.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr11_+_64949158_64949216	0.151166	GLI3	ENST00000527739.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000526966.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533129.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000524773.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr9_+_4839762_4839779	0.150285	GLI3	ENST00000448872.2|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000441844.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr8_+_145218673_145218673	0.150241	GLI3	ENST00000326134.5|MROH1|ENSG00000179832.13|maestro heat-like repeat family member 1
hg19_v2_chr11_-_119187826_119187847	0.15021	GLI3	ENST00000264036.4|MCAM|ENSG00000076706.10|melanoma cell adhesion molecule
hg19_v2_chr8_+_29953163_29953190	0.150104	GLI3	ENST00000518192.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr10_+_70939983_70940044	0.15	GLI3	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr9_-_101017900_101017951	0.149905	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr11_-_116708302_116708347	0.149617	GLI3	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr13_+_20532848_20532890	0.149478	GLI3	ENST00000382874.2|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr13_+_32313658_32313679	0.149458	GLI3	ENST00000380314.1|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2 	ENST00000298386.2|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2
hg19_v2_chr10_-_134331695_134331767	0.14832	GLI3	ENST00000455414.1|RP11-432J24.5|ENSG00000226900.1|RP11-432J24.5
hg19_v2_chr12_+_119772502_119772522	0.148247	GLI3	ENST00000536742.1|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60 	ENST00000327554.2|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60
hg19_v2_chr3_+_129262057_129262057	0.147147	GLI3	ENST00000324382.2|H1FOO|ENSG00000178804.3|H1 histone family, member O, oocyte-specific
hg19_v2_chr17_+_6899366_6899384	0.146847	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr4_+_110354928_110355030	0.146774	GLI3	ENST00000504968.2|SEC24B|ENSG00000138802.7|SEC24 family member B 	ENST00000399100.2|SEC24B|ENSG00000138802.7|SEC24 family member B 	ENST00000265175.5|SEC24B|ENSG00000138802.7|SEC24 family member B
hg19_v2_chrX_+_48242863_48242939	0.146005	GLI3	ENST00000376886.2|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4 	ENST00000375517.3|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4
hg19_v2_chr16_+_30212050_30212050	0.145596	GLI3	ENST00000563322.1|SULT1A3|ENSG00000261052.1|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3
hg19_v2_chr11_+_44117741_44117798	0.145359	GLI3	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr1_+_1550795_1550927	0.143544	GLI3	ENST00000520777.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000357210.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000360522.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000378710.3|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000355826.5|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000518681.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000505820.2|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr11_-_13484713_13484850	0.143371	GLI3	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr11_-_61658853_61658932	0.143158	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr11_+_1940786_1940799	0.143132	GLI3	ENST00000278317.6|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381561.4|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381548.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000360603.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381549.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast)
hg19_v2_chr11_+_60197040_60197062	0.142968	GLI3	ENST00000300190.2|MS4A5|ENSG00000166930.2|membrane-spanning 4-domains, subfamily A, member 5
hg19_v2_chr14_+_50291993_50291993	0.142919	GLI3	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr17_-_39165366_39165381	0.14252	GLI3	ENST00000391588.1|KRTAP3-1|ENSG00000212901.2|keratin associated protein 3-1
hg19_v2_chr19_-_43709817_43709926	0.141139	GLI3	ENST00000433626.2|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4 	ENST00000405312.3|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4
hg19_v2_chr22_+_39436862_39436924	0.140814	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr2_+_26915584_26915634	0.139017	GLI3	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr1_-_47407136_47407154	0.138837	GLI3	ENST00000462347.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000371905.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000310638.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr6_-_33037019_33037047	0.138594	GLI3	ENST00000437811.1|HLA-DPA1|ENSG00000231389.3|major histocompatibility complex, class II, DP alpha 1
hg19_v2_chr9_-_132404374_132404450	0.138247	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr6_-_35480640_35480653	0.138217	GLI3	ENST00000428978.1|TULP1|ENSG00000112041.8|tubby like protein 1 	ENST00000322263.4|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr19_-_39226045_39226071	0.138165	GLI3	ENST00000597987.1|CAPN12|ENSG00000182472.4|calpain 12 	ENST00000595177.1|CAPN12|ENSG00000182472.4|calpain 12
hg19_v2_chr7_+_1126461_1126512	0.138134	GLI3	ENST00000297469.3|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr3_-_128902759_128902770	0.137866	GLI3	ENST00000422453.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000504813.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000512338.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr7_-_100034060_100034188	0.137758	GLI3	ENST00000292330.2|PPP1R35|ENSG00000160813.2|protein phosphatase 1, regulatory subunit 35
hg19_v2_chr3_-_14166316_14166383	0.137289	GLI3	ENST00000396914.3|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4 	ENST00000295767.5|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4
hg19_v2_chrX_-_151903184_151903211	0.136554	GLI3	ENST00000357916.4|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12 	ENST00000393869.3|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12
hg19_v2_chr11_+_73003824_73003859	0.136531	GLI3	ENST00000538328.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr1_-_120190396_120190396	0.135832	GLI3	ENST00000421812.2|ZNF697|ENSG00000143067.4|zinc finger protein 697
hg19_v2_chr7_-_767249_767307	0.135829	GLI3	ENST00000403562.1|PRKAR1B|ENSG00000188191.10|protein kinase, cAMP-dependent, regulatory, type I, beta
hg19_v2_chr6_-_80657292_80657301	0.135627	GLI3	ENST00000369816.4|ELOVL4|ENSG00000118402.5|ELOVL fatty acid elongase 4
hg19_v2_chr16_+_31885079_31885165	0.13544	GLI3	ENST00000300870.10|ZNF267|ENSG00000185947.10|zinc finger protein 267 	ENST00000394846.3|ZNF267|ENSG00000185947.10|zinc finger protein 267
hg19_v2_chr11_-_3078616_3078667	0.135223	GLI3	ENST00000401769.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000278224.9|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000397114.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000380525.4|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase
hg19_v2_chr11_-_119252359_119252421	0.135	GLI3	ENST00000455332.2|USP2|ENSG00000036672.11|ubiquitin specific peptidase 2
hg19_v2_chr8_-_131028869_131028918	0.134988	GLI3	ENST00000518283.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519110.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chrX_-_44402231_44402259	0.134843	GLI3	ENST00000378045.4|FUNDC1|ENSG00000069509.5|FUN14 domain containing 1
hg19_v2_chr7_+_916183_916204	0.134543	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr7_+_29846099_29846181	0.134356	GLI3	ENST00000409123.1|WIPF3|ENSG00000122574.6|WAS/WASL interacting protein family, member 3
hg19_v2_chr6_-_35480705_35480718	0.133994	GLI3	ENST00000229771.6|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr22_+_31489344_31489371	0.13371	GLI3	ENST00000404574.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr10_-_101989315_101989376	0.133642	GLI3	ENST00000370397.7|CHUK|ENSG00000213341.6|conserved helix-loop-helix ubiquitous kinase
hg19_v2_chr7_-_100860851_100860954	0.133301	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chr1_-_21978312_21978363	0.132123	GLI3	ENST00000359708.4|RAP1GAP|ENSG00000076864.15|RAP1 GTPase activating protein 	ENST00000290101.4|RAP1GAP|ENSG00000076864.15|RAP1 GTPase activating protein
hg19_v2_chr19_+_55085248_55085346	0.131632	GLI3	ENST00000391738.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000251376.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000391737.1|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000396321.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000418536.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000448689.1|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1
hg19_v2_chr17_-_73851285_73851501	0.130459	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr14_+_103566665_103566665	0.129241	GLI3	ENST00000559116.1|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr19_-_19281054_19281098	0.128802	GLI3	ENST00000424583.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000410050.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409224.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409447.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B
hg19_v2_chr10_+_1034646_1034660	0.128649	GLI3	ENST00000360059.5|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000545048.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr14_+_103592636_103592664	0.128539	GLI3	ENST00000333007.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr15_-_26108355_26108417	0.128223	GLI3	ENST00000356865.6|ATP10A|ENSG00000206190.7|ATPase, class V, type 10A
hg19_v2_chr20_+_814377_814452	0.128076	GLI3	ENST00000304189.2|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A 	ENST00000381939.1|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr6_+_31371337_31371449	0.12795	GLI3	ENST00000449934.2|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A 	ENST00000421350.1|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A
hg19_v2_chr15_-_31453157_31453308	0.127789	GLI3	ENST00000559177.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1 	ENST00000558445.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr6_-_31763721_31763734	0.12774	GLI3	ENST00000375663.3|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr16_+_77233294_77233341	0.127412	GLI3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr17_-_62502639_62502849	0.127225	GLI3	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr1_-_160681593_160681641	0.127154	GLI3	ENST00000368045.3|CD48|ENSG00000117091.5|CD48 molecule 	ENST00000368046.3|CD48|ENSG00000117091.5|CD48 molecule
hg19_v2_chr11_-_65374430_65374497	0.126891	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr3_-_165555200_165555260	0.126326	GLI3	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr5_-_54281407_54281429	0.126316	GLI3	ENST00000381403.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr11_+_13690249_13690274	0.126113	GLI3	ENST00000532701.1|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr11_+_124735282_124735332	0.125665	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr5_+_218356_218453	0.125238	GLI3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr1_-_11866034_11866115	0.125159	GLI3	ENST00000376590.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr1_-_35450897_35450954	0.124726	GLI3	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr8_+_98656693_98656774	0.124656	GLI3	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr20_+_61147651_61147666	0.124374	GLI3	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chrX_+_48542168_48542241	0.124373	GLI3	ENST00000376701.4|WAS|ENSG00000015285.6|Wiskott-Aldrich syndrome
hg19_v2_chr1_+_243419306_243419422	0.124081	GLI3	ENST00000355875.4|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000391846.1|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000366541.3|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000343783.6|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8
hg19_v2_chr11_-_62341445_62341499	0.123683	GLI3	ENST00000329251.4|EEF1G|ENSG00000254772.5|eukaryotic translation elongation factor 1 gamma
hg19_v2_chr16_+_70148230_70148275	0.123058	GLI3	ENST00000398122.3|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit 	ENST00000568530.1|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit
hg19_v2_chr19_-_33793430_33793470	0.123015	GLI3	ENST00000498907.2|CEBPA|ENSG00000245848.2|CCAAT/enhancer binding protein (C/EBP), alpha
hg19_v2_chr19_+_17337406_17337461	0.122744	GLI3	ENST00000597836.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr17_+_73084038_73084081	0.122716	GLI3	ENST00000578376.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000329783.4|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr1_-_154458520_154458520	0.122248	GLI3	ENST00000486773.1|SHE|ENSG00000169291.5|Src homology 2 domain containing E
hg19_v2_chr8_+_94929168_94929235	0.122024	GLI3	ENST00000518107.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000396200.3|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr12_-_13248598_13248630	0.121963	GLI3	ENST00000337630.6|GSG1|ENSG00000111305.14|germ cell associated 1 	ENST00000545699.1|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr2_+_26785409_26785477	0.121952	GLI3	ENST00000329615.3|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70 	ENST00000409392.1|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70
hg19_v2_chr11_-_75062730_75062775	0.121608	GLI3	ENST00000420843.2|ARRB1|ENSG00000137486.12|arrestin, beta 1 	ENST00000360025.3|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr20_-_44420507_44420547	0.121586	GLI3	ENST00000243938.4|WFDC3|ENSG00000124116.14|WAP four-disulfide core domain 3
hg19_v2_chr3_-_38691119_38691203	0.121463	GLI3	ENST00000333535.4|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000413689.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000443581.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000425664.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000451551.2|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit
hg19_v2_chr13_+_20532900_20532923	0.121372	GLI3	ENST00000382871.2|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr2_+_234545148_234545161	0.120979	GLI3	ENST00000373445.1|UGT1A10|ENSG00000242515.1|UDP glucuronosyltransferase 1 family, polypeptide A10
hg19_v2_chr20_-_62258394_62258464	0.120886	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr5_+_72861560_72861605	0.120821	GLI3	ENST00000296792.4|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000509005.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000543251.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000508686.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 	ENST00000508491.1|UTP15|ENSG00000164338.5|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)
hg19_v2_chr16_-_67840442_67840555	0.120625	GLI3	ENST00000536251.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000448631.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000602677.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000411657.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000425512.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000317506.3|RANBP10|ENSG00000141084.6|RAN binding protein 10
hg19_v2_chr15_-_43212836_43212991	0.119906	GLI3	ENST00000566931.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000564431.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000567274.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr6_-_99963286_99963365	0.119329	GLI3	ENST00000369233.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000500704.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000329966.6|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45
hg19_v2_chr17_-_7760779_7760896	0.118995	GLI3	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_+_55385731_55385746	0.118862	GLI3	ENST00000469767.1|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000355524.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391725.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000345937.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000353758.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000359272.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391723.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391724.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr17_-_27278445_27278624	0.118828	GLI3	ENST00000268756.3|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584685.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr1_+_203595903_203595934	0.118526	GLI3	ENST00000367218.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000367219.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000391954.2|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4
hg19_v2_chr8_+_22857048_22857092	0.118307	GLI3	ENST00000251822.6|RHOBTB2|ENSG00000008853.12|Rho-related BTB domain containing 2
hg19_v2_chr3_+_128997798_128997851	0.118156	GLI3	ENST00000502878.2|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000389735.3|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000509551.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000511665.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific
hg19_v2_chr11_+_2482661_2482675	0.11778	GLI3	ENST00000335475.5|KCNQ1|ENSG00000053918.11|potassium voltage-gated channel, KQT-like subfamily, member 1
hg19_v2_chr5_-_44388899_44388918	0.117553	GLI3	ENST00000264664.4|FGF10|ENSG00000070193.4|fibroblast growth factor 10
hg19_v2_chr19_-_344786_344826	0.117337	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr3_-_128902729_128902753	0.117329	GLI3	ENST00000451728.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000446936.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000502976.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000500450.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000441626.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr17_-_61920280_61920425	0.117016	GLI3	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chrX_-_48056199_48056233	0.116908	GLI3	ENST00000311798.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5 	ENST00000347757.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5
hg19_v2_chr7_+_119913688_119913728	0.116563	GLI3	ENST00000331113.4|KCND2|ENSG00000184408.5|potassium voltage-gated channel, Shal-related subfamily, member 2
hg19_v2_chr6_+_46620705_46620732	0.116469	GLI3	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr9_+_135937365_135937365	0.116368	GLI3	ENST00000372080.4|CEL|ENSG00000170835.10|carboxyl ester lipase 	ENST00000351304.7|CEL|ENSG00000170835.10|carboxyl ester lipase
hg19_v2_chr16_+_84224740_84224746	0.115292	GLI3	ENST00000268624.3|ADAD2|ENSG00000140955.6|adenosine deaminase domain containing 2
hg19_v2_chr6_+_35436167_35436194	0.115046	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr11_-_19082216_19082228	0.114941	GLI3	ENST00000329773.2|MRGPRX2|ENSG00000183695.2|MAS-related GPR, member X2
hg19_v2_chr17_-_15522826_15522826	0.114778	GLI3	ENST00000395906.3|CDRT1|ENSG00000241322.4|CMT1A duplicated region transcript 1
hg19_v2_chr9_+_72435709_72435743	0.114351	GLI3	ENST00000377197.3|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135 	ENST00000527647.1|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135
hg19_v2_chr18_-_31803435_31803515	0.114144	GLI3	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr11_+_66247478_66247503	0.11387	GLI3	ENST00000531863.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3 	ENST00000532677.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3
hg19_v2_chr12_-_6798523_6798548	0.113626	GLI3	ENST00000319770.3|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr11_+_66025167_66025190	0.113268	GLI3	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr4_+_1283639_1283705	0.112482	GLI3	ENST00000303400.4|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000505177.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000503653.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000264750.6|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000502558.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000452175.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000514708.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher
hg19_v2_chr11_-_72432950_72433073	0.112297	GLI3	ENST00000426523.1|ARAP1|ENSG00000186635.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 	ENST00000429686.1|ARAP1|ENSG00000186635.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
hg19_v2_chr7_-_45026200_45026273	0.112214	GLI3	ENST00000577700.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000580458.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000579383.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000584686.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000585030.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000582727.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr17_+_75369167_75369272	0.111697	GLI3	ENST00000423034.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr2_+_11273179_11273261	0.111477	GLI3	ENST00000381585.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50 	ENST00000405022.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50
hg19_v2_chr9_+_103204553_103204560	0.111427	GLI3	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough 	ENST00000334943.6|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr6_-_27841289_27841318	0.111279	GLI3	ENST00000355981.2|HIST1H4L|ENSG00000198558.2|histone cluster 1, H4l
hg19_v2_chr16_+_2564254_2564305	0.111213	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr7_+_130020932_130020948	0.110903	GLI3	ENST00000484324.1|CPA1|ENSG00000091704.5|carboxypeptidase A1 (pancreatic)
hg19_v2_chr9_+_33265011_33265059	0.110903	GLI3	ENST00000419016.2|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr6_-_30899924_30899954	0.110875	GLI3	ENST00000359086.3|SFTA2|ENSG00000196260.3|surfactant associated 2
hg19_v2_chr12_-_117537240_117537274	0.110534	GLI3	ENST00000392545.4|TESC|ENSG00000088992.13|tescalcin 	ENST00000541210.1|TESC|ENSG00000088992.13|tescalcin 	ENST00000335209.7|TESC|ENSG00000088992.13|tescalcin
hg19_v2_chr7_-_45026159_45026188	0.11023	GLI3	ENST00000584327.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000438705.3|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr21_+_44589118_44589151	0.109196	GLI3	ENST00000291554.2|CRYAA|ENSG00000160202.3|crystallin, alpha A
hg19_v2_chr3_+_46204959_46205096	0.108822	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.10|chemokine (C-C motif) receptor 3
hg19_v2_chr22_-_42322795_42322822	0.108695	GLI3	ENST00000291232.3|TNFRSF13C|ENSG00000159958.3|tumor necrosis factor receptor superfamily, member 13C
hg19_v2_chr16_-_68057770_68057770	0.107977	GLI3	ENST00000332395.5|DDX28|ENSG00000182810.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
hg19_v2_chr2_+_113479063_113479063	0.107771	GLI3	ENST00000327581.4|NT5DC4|ENSG00000144130.7|5'-nucleotidase domain containing 4
hg19_v2_chr11_+_14665263_14665274	0.107717	GLI3	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr15_-_43212996_43213013	0.10729	GLI3	ENST00000567840.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr1_-_227922934_227923112	0.107133	GLI3	ENST00000366758.3|JMJD4|ENSG00000081692.8|jumonji domain containing 4 	ENST00000438896.2|JMJD4|ENSG00000081692.8|jumonji domain containing 4
hg19_v2_chrX_+_48911090_48911113	0.106887	GLI3	ENST00000597275.1|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120
hg19_v2_chr1_-_86861936_86862023	0.106774	GLI3	ENST00000394733.2|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000359242.3|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000294678.2|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000479890.1|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000317336.7|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000370567.1|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000394731.1|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000478286.2|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000370566.3|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like
hg19_v2_chr19_+_40697514_40697651	0.106737	GLI3	ENST00000253055.3|MAP3K10|ENSG00000130758.3|mitogen-activated protein kinase kinase kinase 10
hg19_v2_chr17_+_72270380_72270420	0.106651	GLI3	ENST00000582036.1|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2 	ENST00000307504.5|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2
hg19_v2_chr12_+_1800179_1800250	0.10664	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr15_-_42565606_42565649	0.106599	GLI3	ENST00000307216.6|TMEM87A|ENSG00000103978.11|transmembrane protein 87A 	ENST00000448392.1|TMEM87A|ENSG00000103978.11|transmembrane protein 87A
hg19_v2_chr1_+_47603109_47603127	0.106581	GLI3	ENST00000371890.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000294337.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000371891.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22
hg19_v2_chr3_-_32612263_32612366	0.106569	GLI3	ENST00000432458.2|DYNC1LI1|ENSG00000144635.4|dynein, cytoplasmic 1, light intermediate chain 1 	ENST00000424991.1|DYNC1LI1|ENSG00000144635.4|dynein, cytoplasmic 1, light intermediate chain 1 	ENST00000273130.4|DYNC1LI1|ENSG00000144635.4|dynein, cytoplasmic 1, light intermediate chain 1
hg19_v2_chr15_-_49447835_49447858	0.106282	GLI3	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr1_-_211752073_211752084	0.105928	GLI3	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr19_-_54804173_54804302	0.105892	GLI3	ENST00000391744.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 	ENST00000251390.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3
hg19_v2_chr19_+_2096868_2096922	0.105432	GLI3	ENST00000395296.1|IZUMO4|ENSG00000099840.9|IZUMO family member 4 	ENST00000395301.3|IZUMO4|ENSG00000099840.9|IZUMO family member 4
hg19_v2_chr2_+_171673072_171673225	0.105234	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr8_+_41386725_41386757	0.105	GLI3	ENST00000276533.3|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000520710.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000518671.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog)
hg19_v2_chr19_-_376011_376031	0.104548	GLI3	ENST00000342640.4|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr1_-_182573514_182573543	0.103933	GLI3	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr19_+_7599128_7599150	0.103853	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr15_+_78632666_78632701	0.103819	GLI3	ENST00000299529.6|CRABP1|ENSG00000166426.7|cellular retinoic acid binding protein 1
hg19_v2_chr17_+_7323634_7323679	0.103735	GLI3	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr19_+_55385682_55385717	0.103724	GLI3	ENST00000391726.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr5_+_10250328_10250362	0.103661	GLI3	ENST00000515390.1|CCT5|ENSG00000150753.7|chaperonin containing TCP1, subunit 5 (epsilon)
hg19_v2_chr6_-_34073743_34073761	0.102881	GLI3	ENST00000609222.1|GRM4|ENSG00000124493.9|glutamate receptor, metabotropic 4
hg19_v2_chr17_-_48785216_48785291	0.102362	GLI3	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr18_-_12884150_12884250	0.102256	GLI3	ENST00000591115.1|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000309660.5|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr20_+_43343886_43344020	0.102107	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr2_-_43266680_43266701	0.101735	GLI3	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr6_-_170151603_170151713	0.101631	GLI3	ENST00000366774.3|TCTE3|ENSG00000184786.4|t-complex-associated-testis-expressed 3
hg19_v2_chr5_+_113769205_113769227	0.101513	GLI3	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr11_-_30608413_30608423	0.101511	GLI3	ENST00000528686.1|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr11_+_64052692_64052747	0.101228	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr22_+_26565440_26565624	0.10118	GLI3	ENST00000404234.3|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000529632.2|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000360929.3|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000248933.6|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like 	ENST00000343706.4|SEZ6L|ENSG00000100095.14|seizure related 6 homolog (mouse)-like
hg19_v2_chr1_+_155178518_155178600	0.10117	GLI3	ENST00000316721.4|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr19_+_44084696_44084790	0.100868	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr20_+_43343517_43343580	0.100866	GLI3	ENST00000372865.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr5_+_73980965_73980976	0.100671	GLI3	ENST00000261416.7|HEXB|ENSG00000049860.9|hexosaminidase B (beta polypeptide)
hg19_v2_chr10_-_102989551_102989551	0.100203	GLI3	ENST00000370193.2|LBX1|ENSG00000138136.5|ladybird homeobox 1
hg19_v2_chr17_-_7307358_7307456	0.10015	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr16_-_88923285_88923388	0.0999017	GLI3	ENST00000542788.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000569433.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000268695.5|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000568311.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase
hg19_v2_chr17_-_46692287_46692317	0.0998966	GLI3	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr5_-_89705537_89705610	0.0994337	GLI3	ENST00000522864.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000522083.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000522565.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000522842.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000283122.3|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3
hg19_v2_chr1_+_36621529_36621585	0.099379	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr17_-_7761172_7761209	0.0984481	GLI3	ENST00000333775.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575771.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr17_+_7621045_7621079	0.0984033	GLI3	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr17_+_73629500_73629532	0.0982967	GLI3	ENST00000375215.3|SMIM5|ENSG00000204323.5|small integral membrane protein 5
hg19_v2_chr17_+_76374714_76374759	0.0978002	GLI3	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr11_+_65819802_65819871	0.0974635	GLI3	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chrX_-_148713440_148713568	0.0971415	GLI3	ENST00000536359.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000316916.8|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr9_-_34458531_34458582	0.096864	GLI3	ENST00000379089.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379087.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379084.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379081.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379080.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000422409.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379078.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000445726.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000297620.4|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A
hg19_v2_chr17_+_65040678_65040733	0.0967036	GLI3	ENST00000226021.3|CACNG1|ENSG00000108878.3|calcium channel, voltage-dependent, gamma subunit 1
hg19_v2_chr13_+_46039037_46039126	0.0959012	GLI3	ENST00000349995.5|COG3|ENSG00000136152.10|component of oligomeric golgi complex 3
hg19_v2_chr17_-_10600818_10600885	0.0957945	GLI3	ENST00000577427.1|SCO1|ENSG00000133028.6|SCO1 cytochrome c oxidase assembly protein 	ENST00000255390.5|SCO1|ENSG00000133028.6|SCO1 cytochrome c oxidase assembly protein
hg19_v2_chr22_+_48027423_48027466	0.095509	GLI3	ENST00000423737.1|RP11-191L9.4|ENSG00000224271.1|RP11-191L9.4
hg19_v2_chr21_-_33984456_33984726	0.0953701	GLI3	ENST00000431216.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000553001.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000440966.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr17_+_49337881_49337947	0.0953261	GLI3	ENST00000225298.7|UTP18|ENSG00000011260.9|UTP18 small subunit (SSU) processome component homolog (yeast)
hg19_v2_chr4_-_96470108_96470130	0.0951806	GLI3	ENST00000513796.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr8_-_41655107_41655159	0.0948857	GLI3	ENST00000347528.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000289734.7|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000379758.2|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396945.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396942.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000352337.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr8_-_22526597_22526661	0.094739	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr1_+_155293702_155293729	0.0941777	GLI3	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr6_-_29648887_29648944	0.0940511	GLI3	ENST00000376883.1|ZFP57|ENSG00000204644.5|ZFP57 zinc finger protein
hg19_v2_chr13_+_27825706_27825741	0.0940006	GLI3	ENST00000272274.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000319826.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000326092.4|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr1_-_200589859_200589887	0.0937127	GLI3	ENST00000367350.4|KIF14|ENSG00000118193.7|kinesin family member 14
hg19_v2_chr1_-_40254482_40254550	0.0934624	GLI3	ENST00000397360.2|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b 	ENST00000372827.3|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b
hg19_v2_chr12_-_6798616_6798684	0.0927273	GLI3	ENST00000355772.4|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000417772.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396801.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396799.2|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr17_-_3867585_3867748	0.0926271	GLI3	ENST00000359983.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000352011.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397043.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397041.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397035.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397039.1|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000309890.7|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous
hg19_v2_chr13_-_88463487_88463524	0.0915808	GLI3	ENST00000606221.1|RP11-471M2.3|ENSG00000272046.1|RP11-471M2.3
hg19_v2_chr22_-_18507279_18507364	0.0914813	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr4_-_176733897_176733906	0.0914654	GLI3	ENST00000393658.2|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chrX_+_55026763_55026831	0.0912759	GLI3	ENST00000374987.3|APEX2|ENSG00000169188.4|APEX nuclease (apurinic/apyrimidinic endonuclease) 2
hg19_v2_chrX_+_15525426_15525441	0.0910358	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr1_-_63153944_63154110	0.0909499	GLI3	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr1_+_47901689_47901689	0.0906438	GLI3	ENST00000334793.5|FOXD2|ENSG00000186564.5|forkhead box D2
hg19_v2_chr1_-_160549235_160549306	0.0905511	GLI3	ENST00000368054.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368048.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000311224.4|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368051.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000534968.1|CD84|ENSG00000066294.10|CD84 molecule
hg19_v2_chr19_-_18197799_18197815	0.0905205	GLI3	ENST00000430026.3|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1 	ENST00000593993.2|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr12_+_69186125_69186125	0.0896514	GLI3	ENST00000399333.3|AC124890.1|ENSG00000251695.2|HCG1774533, isoform CRA_a; PRO2268; Uncharacterized protein
hg19_v2_chrX_-_45629661_45629677	0.0896237	GLI3	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr1_+_92414928_92414944	0.0893093	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr1_+_150954493_150954528	0.0891544	GLI3	ENST00000368947.4|ANXA9|ENSG00000143412.5|annexin A9
hg19_v2_chr1_+_240255166_240255197	0.0885396	GLI3	ENST00000319653.9|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr6_-_53213587_53213772	0.0884849	GLI3	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr1_+_209941942_209941964	0.0884005	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr19_+_17448348_17448406	0.0882393	GLI3	ENST00000324894.8|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000358792.7|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000600625.1|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial)
hg19_v2_chr17_-_21117902_21117937	0.0880878	GLI3	ENST00000317635.5|TMEM11|ENSG00000178307.5|transmembrane protein 11
hg19_v2_chr14_-_106478603_106478603	0.0880715	GLI3	ENST00000390596.2|IGHV4-4|ENSG00000211936.2|immunoglobulin heavy variable 4-4
hg19_v2_chr5_-_150460539_150460640	0.0878768	GLI3	ENST00000520931.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000520695.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000521591.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000518977.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr20_-_62199427_62199427	0.0876679	GLI3	ENST00000427522.2|HELZ2|ENSG00000130589.12|helicase with zinc finger 2, transcriptional coactivator
hg19_v2_chr19_-_17571722_17571763	0.0875106	GLI3	ENST00000301944.2|NXNL1|ENSG00000171773.2|nucleoredoxin-like 1
hg19_v2_chr19_-_22193706_22193721	0.087496	GLI3	ENST00000597040.1|ZNF208|ENSG00000160321.10|zinc finger protein 208
hg19_v2_chr10_+_134145614_134145724	0.0874097	GLI3	ENST00000368615.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000392638.2|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000344079.5|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000356571.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000368614.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr12_-_6798410_6798503	0.0870571	GLI3	ENST00000361959.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000436774.2|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000544482.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr3_-_53925863_53926015	0.0869947	GLI3	ENST00000541726.1|SELK|ENSG00000113811.6|Selenoprotein K  	ENST00000495461.1|SELK|ENSG00000113811.6|Selenoprotein K
hg19_v2_chr22_+_51176624_51176663	0.0861602	GLI3	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr1_+_92414952_92414991	0.0854232	GLI3	ENST00000449584.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000427104.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000355011.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000448194.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000426141.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000450792.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000548992.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000552654.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000457265.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr15_-_65321943_65321984	0.0854213	GLI3	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr2_+_128458514_128458597	0.0851191	GLI3	ENST00000310981.4|SFT2D3|ENSG00000173349.4|SFT2 domain containing 3
hg19_v2_chr3_+_47844399_47844457	0.085022	GLI3	ENST00000446256.2|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30 	ENST00000445061.1|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr19_-_49522727_49522759	0.0850167	GLI3	ENST00000600007.1|CTB-60B18.10|ENSG00000268655.1|CTB-60B18.10
hg19_v2_chr12_-_96429423_96429439	0.0845896	GLI3	ENST00000228740.2|LTA4H|ENSG00000111144.5|leukotriene A4 hydrolase
hg19_v2_chr20_+_43343476_43343487	0.0845483	GLI3	ENST00000372868.2|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr1_+_234509413_234509447	0.0844612	GLI3	ENST00000366613.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) 	ENST00000366612.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae)
hg19_v2_chrX_+_72667090_72667090	0.084183	GLI3	ENST00000373514.2|CDX4|ENSG00000131264.3|caudal type homeobox 4
hg19_v2_chr20_+_814349_814375	0.0840114	GLI3	ENST00000381941.3|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr19_+_4969116_4969143	0.0840013	GLI3	ENST00000588337.1|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000159111.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000381759.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B
hg19_v2_chr1_+_25664408_25664408	0.0839699	GLI3	ENST00000374358.4|TMEM50A|ENSG00000183726.6|transmembrane protein 50A
hg19_v2_chr22_+_38201114_38201214	0.0839292	GLI3	ENST00000340857.2|H1F0|ENSG00000189060.4|H1 histone family, member 0
hg19_v2_chr9_+_136399929_136399975	0.0837632	GLI3	ENST00000393060.1|ADAMTSL2|ENSG00000197859.5|ADAMTS-like 2
hg19_v2_chr5_-_180018540_180018549	0.0836656	GLI3	ENST00000292641.3|SCGB3A1|ENSG00000161055.3|secretoglobin, family 3A, member 1
hg19_v2_chr6_+_24775641_24775710	0.0835896	GLI3	ENST00000378054.2|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor 	ENST00000476555.1|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor
hg19_v2_chr10_+_1034338_1034411	0.0831354	GLI3	ENST00000360803.4|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000538293.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr17_+_43239191_43239212	0.0826885	GLI3	ENST00000589230.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr20_+_42143136_42143166	0.082324	GLI3	ENST00000373134.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chr17_-_7761256_7761397	0.0822563	GLI3	ENST00000575208.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr3_-_58652523_58652575	0.0821697	GLI3	ENST00000489857.1|FAM3D|ENSG00000198643.2|family with sequence similarity 3, member D 	ENST00000358781.2|FAM3D|ENSG00000198643.2|family with sequence similarity 3, member D
hg19_v2_chr6_+_99282570_99282591	0.0821599	GLI3	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr1_-_157108130_157108173	0.0817816	GLI3	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr21_-_18985230_18985265	0.0816486	GLI3	ENST00000457956.1|BTG3|ENSG00000154640.10|BTG family, member 3 	ENST00000348354.6|BTG3|ENSG00000154640.10|BTG family, member 3
hg19_v2_chr22_+_25003626_25003645	0.0816058	GLI3	ENST00000451366.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000406383.2|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000428855.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr11_-_61684962_61685063	0.0815728	GLI3	ENST00000394836.2|RAB3IL1|ENSG00000167994.7|RAB3A interacting protein (rabin3)-like 1
hg19_v2_chr19_+_41816053_41816178	0.0814637	GLI3	ENST00000269967.3|CCDC97|ENSG00000142039.3|coiled-coil domain containing 97
hg19_v2_chr11_+_22214708_22214730	0.0814059	GLI3	ENST00000324559.8|ANO5|ENSG00000171714.10|anoctamin 5
hg19_v2_chr19_-_375970_375996	0.081311	GLI3	ENST00000346878.2|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr10_-_126847276_126847294	0.0810871	GLI3	ENST00000531469.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr17_+_79981144_79981202	0.0809803	GLI3	ENST00000306688.3|LRRC45|ENSG00000169683.3|leucine rich repeat containing 45
hg19_v2_chr9_+_130860583_130860742	0.0809698	GLI3	ENST00000373064.5|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v2_chr19_+_7598890_7599090	0.0809426	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr18_+_56807096_56807175	0.080927	GLI3	ENST00000588875.1|SEC11C|ENSG00000166562.4|SEC11 homolog C (S. cerevisiae)
hg19_v2_chr22_-_42765174_42765282	0.0809012	GLI3	ENST00000432473.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000412060.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000424852.1|Z83851.1|ENSG00000229891.1|Z83851.1
hg19_v2_chr16_+_67381289_67381306	0.080784	GLI3	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr16_-_75299884_75299919	0.0803048	GLI3	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr6_-_99963252_99963264	0.0802996	GLI3	ENST00000392738.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000327681.6|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000472914.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45
hg19_v2_chr16_+_67381263_67381284	0.0802718	GLI3	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr6_-_33282163_33282211	0.0800739	GLI3	ENST00000434618.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000456592.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr2_-_242842587_242842602	0.080005	GLI3	ENST00000404031.1|AC131097.4|ENSG00000216921.3|Protein LOC285095
hg19_v2_chr5_-_218251_218330	0.0797873	GLI3	ENST00000296824.3|CCDC127|ENSG00000164366.3|coiled-coil domain containing 127
hg19_v2_chr6_+_163148973_163149044	0.0796555	GLI3	ENST00000366888.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr11_-_89541743_89541743	0.0796509	GLI3	ENST00000329758.1|TRIM49|ENSG00000168930.9|tripartite motif containing 49
hg19_v2_chr21_-_33984865_33984883	0.0792617	GLI3	ENST00000458138.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr3_+_4535155_4535234	0.0790235	GLI3	ENST00000544951.1|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr11_-_535515_535592	0.0786767	GLI3	ENST00000311189.7|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000451590.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000417302.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog
hg19_v2_chr3_-_169899504_169899542	0.0785569	GLI3	ENST00000474275.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000484931.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000494943.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000497658.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000465896.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000475729.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000495893.2|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000481639.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000467570.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000466189.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila)
hg19_v2_chrX_+_49020882_49020882	0.0781434	GLI3	ENST00000454342.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr12_-_112847354_112847457	0.0780652	GLI3	ENST00000550566.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000553213.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000424576.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000202773.9|RPL6|ENSG00000089009.11|ribosomal protein L6
hg19_v2_chr12_-_122985494_122985543	0.0772637	GLI3	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr2_+_20068606_20068626	0.0769762	GLI3	ENST00000607100.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr19_-_13947099_13947104	0.0768949	GLI3	ENST00000587762.1|MIR24-2|ENSG00000267519.2|microRNA 24-2
hg19_v2_chr3_-_150421728_150421746	0.0768298	GLI3	ENST00000295910.6|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A 	ENST00000491361.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr12_+_88429223_88429301	0.0768097	GLI3	ENST00000356891.3|C12orf29|ENSG00000133641.13|chromosome 12 open reading frame 29
hg19_v2_chr3_-_51909600_51909619	0.0768064	GLI3	ENST00000446461.1|IQCF5|ENSG00000214681.3|IQ motif containing F5
hg19_v2_chr16_-_18801582_18801630	0.0767343	GLI3	ENST00000565420.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chrX_-_17878827_17878846	0.0767276	GLI3	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr2_+_201936707_201936753	0.0767005	GLI3	ENST00000433898.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 	ENST00000454214.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
hg19_v2_chr11_-_1785139_1785222	0.076248	GLI3	ENST00000236671.2|CTSD|ENSG00000117984.8|cathepsin D
hg19_v2_chr16_-_3767506_3767550	0.0761511	GLI3	ENST00000538171.1|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr12_+_31226779_31226834	0.0761469	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr3_+_32993065_32993074	0.0759397	GLI3	ENST00000330953.5|CCR4|ENSG00000183813.6|chemokine (C-C motif) receptor 4
hg19_v2_chr5_+_61602055_61602083	0.0758143	GLI3	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chrX_+_152240819_152240839	0.0757602	GLI3	ENST00000421798.3|PNMA6C|ENSG00000235961.3|paraneoplastic Ma antigen family member 6C 	ENST00000535416.1|PNMA6A|ENSG00000224201.3|paraneoplastic Ma antigen family member 6A
hg19_v2_chr16_-_850723_850741	0.0756408	GLI3	ENST00000248150.4|GNG13|ENSG00000127588.4|guanine nucleotide binding protein (G protein), gamma 13
hg19_v2_chr21_-_33651324_33651380	0.0755395	GLI3	ENST00000290130.3|MIS18A|ENSG00000159055.3|MIS18 kinetochore protein A
hg19_v2_chrX_-_7895479_7895491	0.0753674	GLI3	ENST00000381042.4|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4
hg19_v2_chr11_-_73587719_73588033	0.0752861	GLI3	ENST00000545127.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000537289.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000355693.4|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
hg19_v2_chr11_+_64073699_64073918	0.0752473	GLI3	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chr10_+_75936444_75936537	0.0746909	GLI3	ENST00000372734.3|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000541550.1|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr16_-_22385901_22385947	0.0742828	GLI3	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr21_+_36041688_36041688	0.0741355	GLI3	ENST00000360731.3|CLIC6|ENSG00000159212.8|chloride intracellular channel 6 	ENST00000349499.2|CLIC6|ENSG00000159212.8|chloride intracellular channel 6
hg19_v2_chr1_+_11866270_11866317	0.0740015	GLI3	ENST00000376497.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376487.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376496.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr22_+_39898325_39898382	0.0738571	GLI3	ENST00000325301.2|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1 	ENST00000404569.1|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1
hg19_v2_chr1_-_31661000_31661000	0.0737958	GLI3	ENST00000263693.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000398657.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000526106.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr11_-_77122928_77123045	0.073152	GLI3	ENST00000528203.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000528592.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000528633.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000529248.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1
hg19_v2_chr3_+_10068095_10068183	0.0731061	GLI3	ENST00000287647.3|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383807.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383806.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000419585.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2
hg19_v2_chr9_+_131873227_131873243	0.073088	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr2_-_68694390_68694434	0.0729022	GLI3	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chr11_+_34938119_34938204	0.0728377	GLI3	ENST00000227868.4|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X 	ENST00000430469.2|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X 	ENST00000533262.1|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X
hg19_v2_chr1_-_231376867_231376943	0.0728041	GLI3	ENST00000366649.2|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131 	ENST00000318906.2|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131 	ENST00000366651.3|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131
hg19_v2_chr19_-_11616645_11616738	0.0727286	GLI3	ENST00000293771.5|ZNF653|ENSG00000161914.5|zinc finger protein 653
hg19_v2_chr1_+_67673297_67673349	0.0724961	GLI3	ENST00000425614.1|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000395227.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr16_-_2318055_2318104	0.072268	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr1_+_35544968_35545014	0.071985	GLI3	ENST00000359858.4|ZMYM1|ENSG00000197056.5|zinc finger, MYM-type 1 	ENST00000373330.1|ZMYM1|ENSG00000197056.5|zinc finger, MYM-type 1
hg19_v2_chr15_+_89164520_89164559	0.0718394	GLI3	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr4_-_105416039_105416065	0.0717516	GLI3	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr16_-_75299845_75299883	0.0716586	GLI3	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr5_-_1799965_1800009	0.0714911	GLI3	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr1_-_156722015_156722034	0.071231	GLI3	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chrX_-_7895755_7895780	0.0711776	GLI3	ENST00000444736.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4 	ENST00000537427.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4 	ENST00000442940.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4
hg19_v2_chr6_-_163148780_163148813	0.0707907	GLI3	ENST00000366892.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366898.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366897.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366896.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase
hg19_v2_chr11_-_118927816_118927868	0.0706966	GLI3	ENST00000534233.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532752.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000525859.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000404233.3|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532421.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000543287.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000527310.2|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000529972.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr12_-_55367361_55367507	0.0703781	GLI3	ENST00000532804.1|TESPA1|ENSG00000135426.10|thymocyte expressed, positive selection associated 1 	ENST00000531122.1|TESPA1|ENSG00000135426.10|thymocyte expressed, positive selection associated 1 	ENST00000533446.1|TESPA1|ENSG00000135426.10|thymocyte expressed, positive selection associated 1
hg19_v2_chr15_-_31453359_31453476	0.0700355	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr22_-_21482046_21482046	0.0693917	GLI3	ENST00000419447.1|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr6_-_159421198_159421254	0.0693515	GLI3	ENST00000252655.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000297262.3|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000367069.2|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr1_+_40505891_40505995	0.0689099	GLI3	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chr16_+_56691911_56691929	0.0687957	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr6_+_28227063_28227117	0.0687939	GLI3	ENST00000343684.3|NKAPL|ENSG00000189134.3|NFKB activating protein-like
hg19_v2_chr8_+_98656336_98656535	0.068754	GLI3	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr1_-_45253377_45253377	0.068684	GLI3	ENST00000372207.3|BEST4|ENSG00000142959.4|bestrophin 4
hg19_v2_chr16_-_52640834_52640847	0.0685704	GLI3	ENST00000510238.3|CASC16|ENSG00000249231.3|cancer susceptibility candidate 16 (non-protein coding)
hg19_v2_chr2_+_20068628_20068661	0.0680526	GLI3	ENST00000449086.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000456119.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000433669.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr12_-_4554780_4554780	0.0680509	GLI3	ENST00000228837.2|FGF6|ENSG00000111241.2|fibroblast growth factor 6
hg19_v2_chr10_+_88718397_88718424	0.0676602	GLI3	ENST00000372017.3|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr16_+_70488480_70488630	0.0673622	GLI3	ENST00000572784.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000574784.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000571514.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000378912.2|FUK|ENSG00000157353.12|fucokinase 	ENST00000428974.2|FUK|ENSG00000157353.12|fucokinase 	ENST00000573352.1|FUK|ENSG00000157353.12|fucokinase 	ENST00000576453.1|FUK|ENSG00000157353.12|fucokinase
hg19_v2_chr2_+_220283091_220283108	0.0672959	GLI3	ENST00000373960.3|DES|ENSG00000175084.7|desmin
hg19_v2_chr11_-_8985927_8986008	0.0672251	GLI3	ENST00000528117.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B 	ENST00000309134.5|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr19_-_17571613_17571693	0.0671148	GLI3	ENST00000594663.1|CTD-2521M24.10|ENSG00000269035.1|Uncharacterized protein
hg19_v2_chr8_-_71581377_71581458	0.0670811	GLI3	ENST00000276590.4|LACTB2|ENSG00000147592.4|lactamase, beta 2 	ENST00000522447.1|LACTB2|ENSG00000147592.4|lactamase, beta 2
hg19_v2_chr17_-_80231557_80231607	0.0662141	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr5_+_80597453_80597475	0.0661325	GLI3	ENST00000438268.2|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9
hg19_v2_chr10_-_81965307_81965351	0.0657763	GLI3	ENST00000537102.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000372231.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000438331.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000422982.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000360615.4|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000265447.4|ANXA11|ENSG00000122359.13|annexin A11
hg19_v2_chr16_-_3767551_3767598	0.0657145	GLI3	ENST00000246957.5|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr3_+_41240986_41241005	0.065378	GLI3	ENST00000396185.3|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa
hg19_v2_chr9_+_33264861_33264940	0.0650111	GLI3	ENST00000223500.8|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr16_-_86588627_86588848	0.0648828	GLI3	ENST00000565482.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000564364.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000561989.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000543303.2|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000381214.5|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000360900.6|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000322911.6|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000546093.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000569000.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000562994.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000561522.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing
hg19_v2_chr19_+_39989580_39989608	0.0648819	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr1_-_47697387_47697457	0.0645124	GLI3	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chr7_+_156931889_156931970	0.0644287	GLI3	ENST00000389103.4|UBE3C|ENSG00000009335.13|ubiquitin protein ligase E3C
hg19_v2_chr1_-_47082495_47082563	0.0641462	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chr16_-_5116025_5116111	0.0641077	GLI3	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr15_+_83098710_83098710	0.0637381	GLI3	ENST00000561062.1|GOLGA6L9|ENSG00000196648.6|golgin A6 family-like 20 	ENST00000358583.3|GOLGA6L9|ENSG00000196648.6|golgin A6 family-like 20
hg19_v2_chr16_-_75285380_75285580	0.0636681	GLI3	ENST00000393420.6|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000162330.5|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr21_-_37432764_37432831	0.0634856	GLI3	ENST00000399212.1|SETD4|ENSG00000185917.9|SET domain containing 4 	ENST00000446166.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chrX_-_119603138_119603220	0.0633114	GLI3	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr8_+_23104130_23104184	0.0630669	GLI3	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr17_-_7760457_7760587	0.062971	GLI3	ENST00000576384.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_+_45147098_45147223	0.0629192	GLI3	ENST00000425690.3|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000344956.4|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000403059.4|PVR|ENSG00000073008.10|poliovirus receptor
hg19_v2_chr2_-_220435963_220436210	0.0627661	GLI3	ENST00000373876.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000404537.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000603926.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000373873.4|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000289656.3|OBSL1|ENSG00000124006.10|obscurin-like 1
hg19_v2_chr2_+_9614652_9614704	0.0622574	GLI3	ENST00000497473.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000470914.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000481367.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000545602.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)
hg19_v2_chr17_-_39968855_39968880	0.0621612	GLI3	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr10_-_18948156_18948202	0.0621258	GLI3	ENST00000414939.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000449529.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000456217.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000444660.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr17_-_47286729_47286764	0.0614836	GLI3	ENST00000300406.2|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511277.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511673.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
hg19_v2_chr9_-_139927462_139927508	0.0614351	GLI3	ENST00000314412.6|FUT7|ENSG00000180549.7|fucosyltransferase 7 (alpha (1,3) fucosyltransferase)
hg19_v2_chr3_-_47517302_47517451	0.0609758	GLI3	ENST00000441517.2|SCAP|ENSG00000114650.14|SREBF chaperone 	ENST00000545718.1|SCAP|ENSG00000114650.14|SREBF chaperone
hg19_v2_chr16_-_20817753_20817816	0.0607392	GLI3	ENST00000389345.5|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000300005.3|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000357967.4|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000569729.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2
hg19_v2_chr1_-_115053781_115053853	0.0606697	GLI3	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr3_+_124355944_124356002	0.0606423	GLI3	ENST00000459915.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr1_+_170904612_170904677	0.060157	GLI3	ENST00000367759.4|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9 	ENST00000367758.3|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9
hg19_v2_chr16_-_1031259_1031327	0.0601505	GLI3	ENST00000563837.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000570014.1|LMF1|ENSG00000103227.14|lipase maturation factor 1 	ENST00000563863.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000565069.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2
hg19_v2_chr17_+_28884130_28884130	0.0596442	GLI3	ENST00000580161.1|TBC1D29|ENSG00000266733.1|TBC1 domain family, member 29
hg19_v2_chr12_-_89919220_89919392	0.0596369	GLI3	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr2_-_105946491_105946491	0.0594815	GLI3	ENST00000393359.2|TGFBRAP1|ENSG00000135966.8|transforming growth factor, beta receptor associated protein 1
hg19_v2_chr10_+_52751010_52751118	0.0593271	GLI3	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr11_+_66025938_66026016	0.0588131	GLI3	ENST00000394066.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr10_+_88414298_88414314	0.0587232	GLI3	ENST00000372071.2|OPN4|ENSG00000122375.7|opsin 4
hg19_v2_chr14_+_75469606_75469690	0.0586645	GLI3	ENST00000266126.5|EIF2B2|ENSG00000119718.6|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa
hg19_v2_chr11_-_8615720_8615836	0.0585639	GLI3	ENST00000358872.3|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000454443.2|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr17_+_8339189_8339285	0.0585578	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr12_-_21927736_21927768	0.0581069	GLI3	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr15_+_74287118_74287144	0.0579705	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr19_-_18197714_18197750	0.0578049	GLI3	ENST00000322153.7|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr14_-_106845789_106845851	0.0574705	GLI3	ENST00000390617.2|IGHV3-35|ENSG00000211957.2|immunoglobulin heavy variable 3-35 (non-functional)
hg19_v2_chr20_-_25207370_25207370	0.0573173	GLI3	ENST00000593352.1|AL035252.1|ENSG00000268302.1|HCG2018895; Uncharacterized protein
hg19_v2_chr11_-_64085533_64085558	0.0571779	GLI3	ENST00000544844.1|TRMT112|ENSG00000173113.2|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
hg19_v2_chr19_-_40896081_40896094	0.0570512	GLI3	ENST00000291823.2|HIPK4|ENSG00000160396.8|homeodomain interacting protein kinase 4
hg19_v2_chr1_+_6845384_6845494	0.0568814	GLI3	ENST00000303635.7|CAMTA1|ENSG00000171735.14|calmodulin binding transcription activator 1
hg19_v2_chr10_-_46970573_46970610	0.0566979	GLI3	ENST00000374325.3|SYT15|ENSG00000204176.9|synaptotagmin XV
hg19_v2_chrX_+_49178536_49178536	0.0565874	GLI3	ENST00000442437.2|GAGE12J|ENSG00000224659.2|G antigen 12J
hg19_v2_chr1_-_228353112_228353213	0.0564693	GLI3	ENST00000366713.1|IBA57-AS1|ENSG00000203684.5|IBA57 antisense RNA 1 (head to head)
hg19_v2_chr2_+_127656486_127656495	0.056455	GLI3	ENST00000568484.1|AC114783.1|ENSG00000237524.3|Protein LOC339760  	ENST00000450035.1|AC114783.1|ENSG00000237524.3|Protein LOC339760
hg19_v2_chr17_+_36584662_36584730	0.0564415	GLI3	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr20_+_18118486_18118525	0.0563023	GLI3	ENST00000432901.3|PET117|ENSG00000232838.3|PET117 homolog (S. cerevisiae)
hg19_v2_chr4_+_88343717_88343800	0.0561843	GLI3	ENST00000302174.4|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9 	ENST00000512216.1|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9 	ENST00000473942.1|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr4_-_102268484_102268521	0.0560153	GLI3	ENST00000394853.4|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr20_+_48884002_48884088	0.0558479	GLI3	ENST00000425497.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3	ENST00000445003.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3
hg19_v2_chr19_+_46195895_46195959	0.05582	GLI3	ENST00000366382.4|QPCTL|ENSG00000011478.7|glutaminyl-peptide cyclotransferase-like
hg19_v2_chrX_-_48693955_48694035	0.0550195	GLI3	ENST00000218230.5|PCSK1N|ENSG00000102109.7|proprotein convertase subtilisin/kexin type 1 inhibitor
hg19_v2_chr17_-_3496171_3496171	0.0546978	GLI3	ENST00000399756.4|TRPV1|ENSG00000196689.6|transient receptor potential cation channel, subfamily V, member 1
hg19_v2_chr14_-_74960030_74960050	0.0546341	GLI3	ENST00000553490.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000557510.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr3_-_155011483_155011564	0.05463	GLI3	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr3_-_127872625_127872757	0.0546148	GLI3	ENST00000464873.1|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1
hg19_v2_chr2_-_220436248_220436282	0.0543889	GLI3	ENST00000265318.4|OBSL1|ENSG00000124006.10|obscurin-like 1
hg19_v2_chrX_+_1734051_1734068	0.0541755	GLI3	ENST00000381229.4|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase 	ENST00000381233.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr6_+_35704804_35704813	0.0541409	GLI3	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr18_+_21594384_21594539	0.0539318	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chr14_-_74959978_74959992	0.0539054	GLI3	ENST00000541064.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chrX_+_2984874_2984874	0.0530083	GLI3	ENST00000359361.2|ARSF|ENSG00000062096.10|arylsulfatase F
hg19_v2_chr6_-_53213780_53213947	0.0527468	GLI3	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr17_-_4090402_4090406	0.0526606	GLI3	ENST00000574736.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr8_-_142011244_142011288	0.0526298	GLI3	ENST00000340930.3|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000520828.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000524257.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000523679.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr2_-_71047658_71047701	0.0523864	GLI3	ENST00000426626.1|CLEC4F|ENSG00000152672.3|C-type lectin domain family 4, member F
hg19_v2_chr16_+_30937213_30937213	0.0521777	GLI3	ENST00000427128.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chrX_-_47489244_47489364	0.0521531	GLI3	ENST00000469388.1|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000396992.3|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000377005.2|CFP|ENSG00000126759.8|complement factor properdin
hg19_v2_chr17_+_7761013_7761074	0.0519468	GLI3	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr9_-_21368075_21368075	0.0519349	GLI3	ENST00000449498.1|IFNA13|ENSG00000233816.2|interferon, alpha 13
hg19_v2_chr2_+_137523086_137523120	0.0518801	GLI3	ENST00000409968.1|THSD7B|ENSG00000144229.7|thrombospondin, type I, domain containing 7B
hg19_v2_chr1_+_155178481_155178493	0.0518044	GLI3	ENST00000368376.3|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr4_-_111119804_111119832	0.0517068	GLI3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr20_-_13619550_13619587	0.0514992	GLI3	ENST00000455532.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000544472.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000539805.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000337743.4|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1
hg19_v2_chr6_-_29455738_29455738	0.0513895	GLI3	ENST00000377127.3|MAS1L|ENSG00000204687.3|MAS1 oncogene-like
hg19_v2_chr15_+_82722225_82722225	0.0513605	GLI3	ENST00000300515.8|GOLGA6L9|ENSG00000197978.8|golgin A6 family-like 9
hg19_v2_chr2_+_60983361_60983418	0.0512229	GLI3	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr19_-_40791302_40791443	0.0511189	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chrX_+_1733876_1733894	0.0510863	GLI3	ENST00000381241.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr1_-_2343951_2344018	0.050832	GLI3	ENST00000288774.3|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000507596.1|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000447513.2|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10
hg19_v2_chr9_-_123476612_123476698	0.0507054	GLI3	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr5_-_180076580_180076605	0.0506913	GLI3	ENST00000502649.1|FLT4|ENSG00000037280.11|fms-related tyrosine kinase 4
hg19_v2_chr17_+_43238438_43238461	0.0504512	GLI3	ENST00000593138.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000586681.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr10_+_81370689_81370711	0.050303	GLI3	ENST00000372308.3|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000398636.3|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000428376.2|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000372313.5|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000419470.2|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000429958.1|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000439264.1|SFTPA1|ENSG00000122852.10|surfactant protein A1
hg19_v2_chr20_+_18118703_18118767	0.0502993	GLI3	ENST00000464792.1|CSRP2BP|ENSG00000149474.9|CSRP2 binding protein
hg19_v2_chr22_+_22764088_22764105	0.0501694	GLI3	ENST00000390299.2|IGLV1-40|ENSG00000211653.2|immunoglobulin lambda variable 1-40
hg19_v2_chr20_-_1165117_1165117	0.0501482	GLI3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chrX_+_153046456_153046571	0.0499221	GLI3	ENST00000393786.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370104.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370108.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370101.3|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000430541.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3 	ENST00000370100.1|SRPK3|ENSG00000184343.6|SRSF protein kinase 3
hg19_v2_chr19_+_17337473_17337549	0.0498743	GLI3	ENST00000598068.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr17_-_43025005_43025149	0.0497894	GLI3	ENST00000587309.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000593135.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000339151.4|KIF18B|ENSG00000186185.9|kinesin family member 18B
hg19_v2_chr17_-_18161870_18162084	0.0497234	GLI3	ENST00000579294.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000545457.2|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000379450.4|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000578558.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila)
hg19_v2_chr10_-_97050777_97050806	0.0496786	GLI3	ENST00000329399.6|PDLIM1|ENSG00000107438.4|PDZ and LIM domain 1
hg19_v2_chr20_-_61885826_61885892	0.0495947	GLI3	ENST00000370316.3|NKAIN4|ENSG00000101198.10|Na+/K+ transporting ATPase interacting 4
hg19_v2_chr16_+_56691606_56691719	0.0492665	GLI3	ENST00000334350.6|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr19_-_35166604_35166604	0.049197	GLI3	ENST00000601241.1|SCGB2B2|ENSG00000205209.3|secretoglobin, family 2B, member 2
hg19_v2_chr6_+_46620676_46620696	0.04907	GLI3	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr19_-_20844368_20844407	0.0490033	GLI3	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr8_+_94929077_94929106	0.0489649	GLI3	ENST00000297598.4|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000520614.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr7_-_142176790_142176842	0.0485104	GLI3	ENST00000390369.2|TRBV7-4|ENSG00000253409.1|T cell receptor beta variable 7-4 (gene/pseudogene)
hg19_v2_chr11_-_59436453_59436530	0.0482291	GLI3	ENST00000300146.9|PATL1|ENSG00000166889.13|protein associated with topoisomerase II homolog 1 (yeast)
hg19_v2_chrX_+_115567767_115567790	0.0475959	GLI3	ENST00000371900.4|SLC6A14|ENSG00000087916.7|solute carrier family 6 (amino acid transporter), member 14
hg19_v2_chr9_+_87285539_87285575	0.0475386	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr4_-_20985632_20985664	0.0474177	GLI3	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr22_+_38349724_38349734	0.0469843	GLI3	ENST00000470701.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr19_+_44100727_44100804	0.0469387	GLI3	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chrX_-_148713365_148713438	0.0466284	GLI3	ENST00000511776.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000507237.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr17_+_6554971_6554995	0.0464428	GLI3	ENST00000391428.2|C17orf100|ENSG00000212734.4|chromosome 17 open reading frame 100
hg19_v2_chr10_+_88414338_88414374	0.0464201	GLI3	ENST00000241891.5|OPN4|ENSG00000122375.7|opsin 4 	ENST00000443292.1|OPN4|ENSG00000122375.7|opsin 4
hg19_v2_chr17_+_7184986_7185076	0.0461871	GLI3	ENST00000317370.8|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4 	ENST00000571308.1|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4
hg19_v2_chr11_+_118842417_118842477	0.0460991	GLI3	ENST00000317011.3|FOXR1|ENSG00000176302.8|forkhead box R1
hg19_v2_chr8_-_142011291_142011307	0.04563	GLI3	ENST00000521059.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr5_+_67088974_67089048	0.0454776	GLI3	ENST00000513234.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000504068.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000515227.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1
hg19_v2_chr3_+_57094469_57094469	0.0453816	GLI3	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr11_-_6640585_6640692	0.0451532	GLI3	ENST00000533371.1|TPP1|ENSG00000166340.10|tripeptidyl peptidase I 	ENST00000528657.1|TPP1|ENSG00000166340.10|tripeptidyl peptidase I 	ENST00000436873.2|TPP1|ENSG00000166340.10|tripeptidyl peptidase I 	ENST00000299427.6|TPP1|ENSG00000166340.10|tripeptidyl peptidase I
hg19_v2_chr3_+_140660634_140660729	0.0449192	GLI3	ENST00000446041.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000507429.1|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000324194.6|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr15_+_85525205_85525308	0.044639	GLI3	ENST00000394553.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000339708.5|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chr4_+_79567314_79567348	0.0445202	GLI3	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr19_+_54619125_54619189	0.0439763	GLI3	ENST00000445811.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000419967.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000445124.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000447810.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31
hg19_v2_chr3_+_187871060_187871102	0.0428544	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr11_-_8615687_8615711	0.042769	GLI3	ENST00000534493.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000422559.2|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr7_+_2636522_2636546	0.0425412	GLI3	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr1_-_231376836_231376865	0.0425341	GLI3	ENST00000451322.1|C1orf131|ENSG00000143633.8|chromosome 1 open reading frame 131
hg19_v2_chr21_-_35831880_35831902	0.0423964	GLI3	ENST00000399289.3|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1 	ENST00000432085.1|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1
hg19_v2_chr9_+_131102925_131103015	0.0423544	GLI3	ENST00000372870.1|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4 	ENST00000300456.4|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4
hg19_v2_chr9_+_131873591_131873622	0.0422497	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr15_+_84116106_84116283	0.0420732	GLI3	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr19_+_1905365_1905417	0.0419867	GLI3	ENST00000329478.2|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3 	ENST00000409472.1|SCAMP4|ENSG00000227500.5|secretory carrier membrane protein 4 	ENST00000602400.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr19_+_3708376_3708501	0.0417431	GLI3	ENST00000539908.2|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr19_+_57791806_57791875	0.0414428	GLI3	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr15_-_72523454_72523684	0.0408495	GLI3	ENST00000565154.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000565184.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000389093.3|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000449901.2|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000335181.5|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000319622.6|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr9_+_21440440_21440440	0.0408315	GLI3	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr10_-_103599591_103599635	0.0407825	GLI3	ENST00000348850.5|KCNIP2|ENSG00000120049.14|Kv channel interacting protein 2
hg19_v2_chr5_+_6633456_6633529	0.0407357	GLI3	ENST00000274192.5|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr8_+_144766669_144766683	0.0406848	GLI3	ENST00000526315.1|ZNF707|ENSG00000181135.11|zinc finger protein 707 	ENST00000532205.1|ZNF707|ENSG00000181135.11|zinc finger protein 707
hg19_v2_chr5_-_58571935_58571951	0.040657	GLI3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr1_+_202976493_202976530	0.0404483	GLI3	ENST00000367242.3|TMEM183A|ENSG00000163444.7|transmembrane protein 183A
hg19_v2_chr11_+_64949343_64949454	0.0404159	GLI3	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr10_+_73079000_73079024	0.0403904	GLI3	ENST00000373189.5|SLC29A3|ENSG00000198246.7|solute carrier family 29 (equilibrative nucleoside transporter), member 3
hg19_v2_chr6_+_28109703_28109716	0.0403865	GLI3	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr17_+_17942684_17942784	0.0401814	GLI3	ENST00000376345.3|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr15_-_41047421_41047534	0.0400559	GLI3	ENST00000560460.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000338376.3|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000560905.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3
hg19_v2_chr16_+_66400533_66400545	0.0400356	GLI3	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr5_-_150460914_150460997	0.0398575	GLI3	ENST00000389378.2|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr14_+_105452094_105452152	0.0395984	GLI3	ENST00000551606.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79 	ENST00000547315.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79
hg19_v2_chrX_+_23682379_23682401	0.0393083	GLI3	ENST00000379349.1|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr19_+_44085189_44085189	0.0388218	GLI3	ENST00000562365.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr1_-_43833628_43833703	0.0385413	GLI3	ENST00000413844.2|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1 	ENST00000372458.3|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1
hg19_v2_chr21_+_45879814_45879814	0.0382836	GLI3	ENST00000596691.1|LRRC3DN|ENSG00000269430.1|LRRC3 downstream neighbor (non-protein coding)
hg19_v2_chr17_-_42200996_42201070	0.0382183	GLI3	ENST00000587135.1|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000225983.6|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000393622.2|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000588703.1|HDAC5|ENSG00000108840.11|histone deacetylase 5
hg19_v2_chr5_+_167956121_167956121	0.0380813	GLI3	ENST00000338333.4|FBLL1|ENSG00000188573.7|fibrillarin-like 1
hg19_v2_chr7_-_151217001_151217019	0.0374703	GLI3	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr3_-_10052763_10052816	0.0369725	GLI3	ENST00000383808.2|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000426698.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000470827.2|EMC3|ENSG00000125037.8|ER membrane protein complex subunit 3
hg19_v2_chr16_+_3508063_3508086	0.0369575	GLI3	ENST00000576787.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572942.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000576916.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000575076.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572131.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit
hg19_v2_chr8_+_10383039_10383057	0.0369498	GLI3	ENST00000328655.3|PRSS55|ENSG00000184647.6|protease, serine, 55 	ENST00000522210.1|PRSS55|ENSG00000184647.6|protease, serine, 55
hg19_v2_chr11_+_107879459_107879702	0.0368524	GLI3	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr6_+_147091575_147091715	0.0365938	GLI3	ENST00000326916.8|ADGB|ENSG00000118492.12|androglobin 	ENST00000470716.2|ADGB|ENSG00000118492.12|androglobin 	ENST00000367488.1|ADGB|ENSG00000118492.12|androglobin
hg19_v2_chr9_+_91150016_91150100	0.0363949	GLI3	ENST00000375854.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2 	ENST00000375855.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2
hg19_v2_chr2_-_17935059_17935102	0.0363771	GLI3	ENST00000448223.2|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000381272.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000351948.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr16_-_11945370_11945442	0.0359574	GLI3	ENST00000573251.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000355674.5|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000542106.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1 	ENST00000571133.1|RSL1D1|ENSG00000171490.8|ribosomal L1 domain containing 1
hg19_v2_chr1_-_156542328_156542364	0.0359388	GLI3	ENST00000361170.2|IQGAP3|ENSG00000183856.6|IQ motif containing GTPase activating protein 3
hg19_v2_chr9_+_131873659_131873714	0.0359187	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr3_+_46598888_46598888	0.0358256	GLI3	ENST00000599511.1|LUZPP1|ENSG00000268324.1|HCG1777807; Leucine zipper protein 3; Uncharacterized protein
hg19_v2_chr4_-_74847800_74847841	0.0358248	GLI3	ENST00000296029.3|PF4|ENSG00000163737.3|platelet factor 4
hg19_v2_chr14_-_107095662_107095662	0.0356786	GLI3	ENST00000390630.2|IGHV4-61|ENSG00000211970.2|immunoglobulin heavy variable 4-61
hg19_v2_chr12_-_123756781_123756881	0.035637	GLI3	ENST00000544658.1|CDK2AP1|ENSG00000111328.2|cyclin-dependent kinase 2 associated protein 1
hg19_v2_chr12_+_120933859_120933899	0.0353756	GLI3	ENST00000242577.6|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548214.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000392508.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr1_-_16344500_16344568	0.0351771	GLI3	ENST00000406363.2|HSPB7|ENSG00000173641.13|heat shock 27kDa protein family, member 7 (cardiovascular) 	ENST00000411503.1|HSPB7|ENSG00000173641.13|heat shock 27kDa protein family, member 7 (cardiovascular) 	ENST00000545268.1|HSPB7|ENSG00000173641.13|heat shock 27kDa protein family, member 7 (cardiovascular) 	ENST00000487046.1|HSPB7|ENSG00000173641.13|heat shock 27kDa protein family, member 7 (cardiovascular)
hg19_v2_chr21_+_47268058_47268079	0.0348374	GLI3	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr20_+_36149602_36149665	0.0347644	GLI3	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr6_-_29600832_29600982	0.0344976	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr2_+_242498135_242498136	0.0343836	GLI3	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr1_+_201979645_201979721	0.0342635	GLI3	ENST00000367284.5|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 	ENST00000367283.3|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v2_chr16_+_55690002_55690023	0.0341864	GLI3	ENST00000414754.3|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr11_-_35441524_35441578	0.0339779	GLI3	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr16_+_56691838_56691862	0.0336973	GLI3	ENST00000394501.2|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr17_-_79633590_79633678	0.0334169	GLI3	ENST00000374741.3|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1 	ENST00000571503.1|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1
hg19_v2_chr6_+_35704855_35704874	0.0332492	GLI3	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr11_-_8986279_8986320	0.0331398	GLI3	ENST00000534025.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr18_-_46987000_46987172	0.0330995	GLI3	ENST00000442713.2|DYM|ENSG00000141627.9|dymeclin 	ENST00000269445.6|DYM|ENSG00000141627.9|dymeclin
hg19_v2_chr11_-_8615488_8615505	0.0322572	GLI3	ENST00000315204.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000396672.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000396673.1|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr1_-_152386732_152386745	0.0322492	GLI3	ENST00000271835.3|CRNN|ENSG00000143536.7|cornulin
hg19_v2_chr6_-_26032288_26032337	0.0318939	GLI3	ENST00000244661.2|HIST1H3B|ENSG00000124693.2|histone cluster 1, H3b
hg19_v2_chr12_-_7904201_7904218	0.0315952	GLI3	ENST00000354629.5|CLEC4C|ENSG00000198178.6|C-type lectin domain family 4, member C
hg19_v2_chr1_-_46152174_46152302	0.0315032	GLI3	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr19_-_53324884_53324922	0.0313125	GLI3	ENST00000457749.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000414252.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000391783.2|ZNF28|ENSG00000198538.6|zinc finger protein 28
hg19_v2_chrX_-_152939780_152939823	0.0310524	GLI3	ENST00000370142.1|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000393831.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000447676.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase
hg19_v2_chr1_-_55266865_55266876	0.0309592	GLI3	ENST00000371274.4|TTC22|ENSG00000006555.6|tetratricopeptide repeat domain 22
hg19_v2_chr2_+_17935383_17935439	0.030941	GLI3	ENST00000524465.1|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease 	ENST00000381254.2|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease 	ENST00000532257.1|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease
hg19_v2_chr22_+_31523734_31523788	0.0307724	GLI3	ENST00000402238.1|INPP5J|ENSG00000185133.9|inositol polyphosphate-5-phosphatase J 	ENST00000404453.1|INPP5J|ENSG00000185133.9|inositol polyphosphate-5-phosphatase J 	ENST00000401755.1|INPP5J|ENSG00000185133.9|inositol polyphosphate-5-phosphatase J
hg19_v2_chr3_-_107809816_107809885	0.0306484	GLI3	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr10_-_105212141_105212183	0.030569	GLI3	ENST00000369788.3|CALHM2|ENSG00000138172.6|calcium homeostasis modulator 2
hg19_v2_chr1_-_16563641_16563709	0.0305148	GLI3	ENST00000375599.3|RSG1|ENSG00000132881.7|REM2 and RAB-like small GTPase 1
hg19_v2_chr2_+_217363793_217363823	0.0304959	GLI3	ENST00000456586.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000598925.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000427280.2|RPL37A|ENSG00000197756.5|ribosomal protein L37a
hg19_v2_chr14_+_72052983_72053003	0.0301398	GLI3	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr17_+_73089382_73089451	0.0297481	GLI3	ENST00000538213.2|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000584118.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr14_-_74959994_74960020	0.0296019	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr8_-_145013711_145013786	0.0294564	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr16_-_75241050_75241083	0.0294548	GLI3	ENST00000303037.8|CTRB2|ENSG00000168928.8|chymotrypsinogen B2
hg19_v2_chr12_-_49259643_49259681	0.0293756	GLI3	ENST00000309739.5|RND1|ENSG00000172602.5|Rho family GTPase 1
hg19_v2_chr8_-_135708787_135708805	0.0292747	GLI3	ENST00000520356.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520727.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520214.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000518191.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000429442.2|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing
hg19_v2_chr3_-_142682178_142682178	0.0292609	GLI3	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr6_-_159420780_159420872	0.0292532	GLI3	ENST00000449822.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr15_-_41120896_41120922	0.0290547	GLI3	ENST00000299174.5|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D 	ENST00000427255.2|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D
hg19_v2_chr3_-_125775629_125775681	0.0290507	GLI3	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr10_+_46997926_46997926	0.0290401	GLI3	ENST00000374314.4|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr6_-_150212029_150212170	0.0289035	GLI3	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr17_-_27224621_27224759	0.0288845	GLI3	ENST00000394906.2|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000585169.1|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000394908.4|FLOT2|ENSG00000132589.11|flotillin 2
hg19_v2_chr13_+_100258907_100258953	0.028787	GLI3	ENST00000376355.3|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000376360.1|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000444838.2|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000376354.1|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000339105.4|CLYBL|ENSG00000125246.11|citrate lyase beta like
hg19_v2_chr16_-_58033762_58033762	0.0284293	GLI3	ENST00000299237.2|ZNF319|ENSG00000166188.2|zinc finger protein 319
hg19_v2_chr20_-_33880204_33880234	0.0283572	GLI3	ENST00000374408.3|FAM83C|ENSG00000125998.7|family with sequence similarity 83, member C
hg19_v2_chr2_+_232573208_232573219	0.0281829	GLI3	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr19_+_17337007_17337018	0.0278739	GLI3	ENST00000215061.4|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr12_-_57882498_57882509	0.0278493	GLI3	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr4_+_113066552_113066563	0.0277309	GLI3	ENST00000309733.5|C4orf32|ENSG00000174749.5|chromosome 4 open reading frame 32
hg19_v2_chr11_+_45868957_45869044	0.0277062	GLI3	ENST00000443527.2|CRY2|ENSG00000121671.7|cryptochrome 2 (photolyase-like)
hg19_v2_chr14_-_36983034_36983064	0.0273474	GLI3	ENST00000518529.2|SFTA3|ENSG00000229415.5|surfactant associated 3
hg19_v2_chr7_+_75831181_75831236	0.0273194	GLI3	ENST00000388802.4|SRRM3|ENSG00000177679.14|serine/arginine repetitive matrix 3 	ENST00000326382.8|SRRM3|ENSG00000177679.14|serine/arginine repetitive matrix 3
hg19_v2_chr16_-_2318373_2318414	0.0272932	GLI3	ENST00000566458.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000320225.5|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr1_-_155225178_155225225	0.0271977	GLI3	ENST00000361361.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chr10_+_75910960_75910989	0.0271797	GLI3	ENST00000539909.1|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000286621.2|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr2_-_95787738_95787763	0.0271432	GLI3	ENST00000272418.2|MRPS5|ENSG00000144029.7|mitochondrial ribosomal protein S5
hg19_v2_chr14_-_21491305_21491316	0.02705	GLI3	ENST00000554531.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr17_-_62502399_62502411	0.0269489	GLI3	ENST00000450599.2|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000585060.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr10_+_52750930_52750950	0.0269004	GLI3	ENST00000401604.2|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr19_-_54746600_54746649	0.0266322	GLI3	ENST00000245621.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000407860.2|LILRB3|ENSG00000204577.7|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 	ENST00000270464.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000419410.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000391735.3|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000396365.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000440558.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
hg19_v2_chr4_+_79567362_79567380	0.0265809	GLI3	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr11_-_35441597_35441613	0.0265257	GLI3	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr15_+_75080883_75080890	0.0264492	GLI3	ENST00000567571.1|CSK|ENSG00000103653.12|c-src tyrosine kinase
hg19_v2_chr3_-_137851220_137851236	0.0262022	GLI3	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr12_-_48099754_48099769	0.0260722	GLI3	ENST00000380650.4|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr9_-_139334247_139334302	0.0258271	GLI3	ENST00000371712.3|INPP5E|ENSG00000148384.11|inositol polyphosphate-5-phosphatase, 72 kDa
hg19_v2_chr20_+_3190006_3190178	0.0251573	GLI3	ENST00000380113.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000455664.2|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000399838.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
hg19_v2_chr19_+_17186577_17186637	0.0250246	GLI3	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chr19_+_54705025_54705034	0.0250225	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr11_+_832944_832994	0.0249174	GLI3	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr13_-_108867101_108867130	0.0248419	GLI3	ENST00000356922.4|LIG4|ENSG00000174405.9|ligase IV, DNA, ATP-dependent
hg19_v2_chr12_+_130646999_130647019	0.0248056	GLI3	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr10_+_30722866_30722969	0.0247173	GLI3	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr19_+_11350278_11350302	0.0245703	GLI3	ENST00000252453.8|C19orf80|ENSG00000130173.9|chromosome 19 open reading frame 80
hg19_v2_chr3_+_140660743_140660758	0.0240059	GLI3	ENST00000453248.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr4_+_3344141_3344178	0.0239016	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr2_+_29204161_29204178	0.0238804	GLI3	ENST00000379558.4|FAM179A|ENSG00000189350.8|family with sequence similarity 179, member A 	ENST00000403861.2|FAM179A|ENSG00000189350.8|family with sequence similarity 179, member A
hg19_v2_chr1_-_247242048_247242098	0.0236677	GLI3	ENST00000366503.2|ZNF670|ENSG00000135747.7|zinc finger protein 670
hg19_v2_chr2_+_47799601_47799601	0.023615	GLI3	ENST00000601243.1|AC138655.1|ENSG00000269563.1|CDNA: FLJ23120 fis, clone LNG07989; HCG1987724; Uncharacterized protein
hg19_v2_chr19_+_49496782_49496873	0.0235286	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chr11_-_8986474_8986558	0.0230436	GLI3	ENST00000525069.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr20_+_31755934_31755974	0.0230106	GLI3	ENST00000354932.5|BPIFA2|ENSG00000131050.6|BPI fold containing family A, member 2
hg19_v2_chr17_+_73642315_73642344	0.0228985	GLI3	ENST00000556126.2|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chrX_+_148863584_148863612	0.0227844	GLI3	ENST00000439010.2|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000298974.5|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000522429.1|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000519822.1|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9
hg19_v2_chr19_-_17185848_17186010	0.0227656	GLI3	ENST00000593360.1|HAUS8|ENSG00000131351.10|HAUS augmin-like complex, subunit 8
hg19_v2_chr19_+_34663397_34663473	0.0226512	GLI3	ENST00000540746.2|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000544216.3|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000433627.5|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr11_+_46403303_46403316	0.0226141	GLI3	ENST00000407067.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395565.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_-_46664074_46664126	0.0223759	GLI3	ENST00000371986.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 	ENST00000371984.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
hg19_v2_chr17_+_10600894_10600974	0.022257	GLI3	ENST00000379774.4|ADPRM|ENSG00000170222.11|ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
hg19_v2_chr15_+_49462434_49462488	0.0220871	GLI3	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr12_-_122750957_122751001	0.021643	GLI3	ENST00000451053.2|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr10_+_51565188_51565236	0.0213174	GLI3	ENST00000430396.2|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4 	ENST00000374087.4|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4 	ENST00000414907.2|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4
hg19_v2_chr17_+_46018872_46019006	0.0213102	GLI3	ENST00000583599.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000434554.2|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000225573.4|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000544840.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000534893.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase
hg19_v2_chr9_-_72435576_72435655	0.0209863	GLI3	ENST00000453410.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000526458.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000439418.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head)
hg19_v2_chr14_+_27342334_27342369	0.0209631	GLI3	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr12_-_45269430_45269440	0.0208623	GLI3	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr1_+_32671236_32671280	0.0206233	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr1_+_63833261_63833282	0.0205026	GLI3	ENST00000371108.4|ALG6|ENSG00000088035.11|ALG6, alpha-1,3-glucosyltransferase
hg19_v2_chr13_+_20532807_20532841	0.0203067	GLI3	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr22_-_30234218_30234276	0.0201426	GLI3	ENST00000307790.3|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000542393.1|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000397771.2|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2
hg19_v2_chr18_-_19180681_19180711	0.0199738	GLI3	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chrX_+_52780318_52780346	0.0195373	GLI3	ENST00000375515.3|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B 	ENST00000276049.6|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B
hg19_v2_chr22_+_38349670_38349723	0.0193982	GLI3	ENST00000442738.2|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000460648.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000407936.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000488684.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000492213.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000606538.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000405557.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr10_-_75193308_75193325	0.0191044	GLI3	ENST00000299432.2|MSS51|ENSG00000166343.5|MSS51 mitochondrial translational activator
hg19_v2_chr7_+_87563458_87563489	0.0190558	GLI3	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr11_+_832804_832887	0.0187626	GLI3	ENST00000397420.3|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525718.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr11_-_47198380_47198448	0.018545	GLI3	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr17_+_17380294_17380351	0.0185068	GLI3	ENST00000268711.3|MED9|ENSG00000141026.4|mediator complex subunit 9 	ENST00000580462.1|MED9|ENSG00000141026.4|mediator complex subunit 9
hg19_v2_chr5_+_125967372_125967417	0.0184274	GLI3	ENST00000357147.3|C5orf48|ENSG00000196900.4|chromosome 5 open reading frame 48
hg19_v2_chr15_+_75105170_75105194	0.0183452	GLI3	ENST00000379709.3|LMAN1L|ENSG00000140506.12|lectin, mannose-binding, 1 like
hg19_v2_chr6_+_163148161_163148181	0.0180076	GLI3	ENST00000337019.3|PACRG|ENSG00000112530.7|PARK2 co-regulated 	ENST00000366889.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr8_+_140943416_140943416	0.0177444	GLI3	ENST00000507535.3|C8orf17|ENSG00000250733.3|chromosome 8 open reading frame 17
hg19_v2_chr1_+_150229554_150229660	0.0176307	GLI3	ENST00000369111.4|CA14|ENSG00000118298.6|carbonic anhydrase XIV
hg19_v2_chr15_-_64665911_64665980	0.0176102	GLI3	ENST00000606793.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000561349.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000560278.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein
hg19_v2_chr19_+_17337027_17337062	0.0175263	GLI3	ENST00000601529.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1 	ENST00000600232.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chr17_-_78120936_78120992	0.017313	GLI3	ENST00000576547.1|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3 	ENST00000269349.3|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3
hg19_v2_chr20_-_50808525_50808661	0.0172642	GLI3	ENST00000216923.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr22_-_50051151_50051190	0.0171138	GLI3	ENST00000400023.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34 	ENST00000444628.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34
hg19_v2_chr16_+_2014941_2014964	0.0170167	GLI3	ENST00000531523.1|SNHG9|ENSG00000255198.3|small nucleolar RNA host gene 9 (non-protein coding)
hg19_v2_chr1_-_157108266_157108347	0.0163421	GLI3	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr1_-_29508321_29508444	0.0161359	GLI3	ENST00000546138.1|SRSF4|ENSG00000116350.11|serine/arginine-rich splicing factor 4
hg19_v2_chr15_-_43877062_43877090	0.0159798	GLI3	ENST00000381885.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1 	ENST00000396923.3|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
hg19_v2_chr14_-_107211459_107211478	0.0154015	GLI3	ENST00000390636.2|IGHV3-73|ENSG00000211976.2|immunoglobulin heavy variable 3-73
hg19_v2_chr15_+_49462397_49462430	0.0151822	GLI3	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr16_+_30064444_30064528	0.0149191	GLI3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr2_+_70314579_70314590	0.0148944	GLI3	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr2_+_234637754_234637773	0.0147698	GLI3	ENST00000482026.1|UGT1A3|ENSG00000243135.1|UDP glucuronosyltransferase 1 family, polypeptide A3 	ENST00000609767.1|UGT1A1|ENSG00000241635.3|UDP glucuronosyltransferase 1 family, polypeptide A8
hg19_v2_chr19_-_46318561_46318577	0.0144414	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr11_-_8615507_8615555	0.0142124	GLI3	ENST00000431279.2|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000418597.1|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr22_-_21482352_21482352	0.0142021	GLI3	ENST00000329949.3|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr1_+_15802594_15802601	0.0140416	GLI3	ENST00000375910.3|CELA2B|ENSG00000215704.5|chymotrypsin-like elastase family, member 2B
hg19_v2_chr19_+_36142147_36142211	0.0134873	GLI3	ENST00000590618.1|COX6B1|ENSG00000126267.4|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)
hg19_v2_chr15_-_65809581_65809617	0.0134282	GLI3	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr2_-_26101374_26101389	0.0133564	GLI3	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr2_+_17935119_17935146	0.013356	GLI3	ENST00000317402.7|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease
hg19_v2_chr1_-_6052463_6052542	0.013324	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr17_-_42019836_42019844	0.0132442	GLI3	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr6_+_27356497_27356557	0.0132365	GLI3	ENST00000244576.4|ZNF391|ENSG00000124613.4|zinc finger protein 391
hg19_v2_chr2_+_85839218_85839255	0.0132166	GLI3	ENST00000448971.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000442708.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000450066.2|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39
hg19_v2_chr2_+_187350883_187350962	0.0131908	GLI3	ENST00000337859.6|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chrX_+_23685653_23685681	0.0130579	GLI3	ENST00000379331.3|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr7_+_38217920_38218003	0.01286	GLI3	ENST00000396013.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000440144.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000453225.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000429075.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like
hg19_v2_chr16_+_89787937_89787971	0.012761	GLI3	ENST00000443381.2|ZNF276|ENSG00000158805.7|zinc finger protein 276
hg19_v2_chrX_+_23685563_23685648	0.0126598	GLI3	ENST00000379341.4|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr8_+_22102626_22102748	0.0126544	GLI3	ENST00000519237.1|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 	ENST00000397802.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr10_+_27444268_27444301	0.0124975	GLI3	ENST00000375940.4|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like 	ENST00000342386.6|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like
hg19_v2_chr14_-_91976794_91976871	0.0124722	GLI3	ENST00000555462.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr17_-_26989136_26989218	0.0122676	GLI3	ENST00000247020.4|SDF2|ENSG00000132581.5|stromal cell-derived factor 2
hg19_v2_chr16_+_89894911_89894955	0.0122097	GLI3	ENST00000378247.3|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2 	ENST00000563972.1|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr16_+_85646891_85646958	0.0120848	GLI3	ENST00000393243.1|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein
hg19_v2_chr3_-_25824872_25824913	0.0118111	GLI3	ENST00000308710.5|NGLY1|ENSG00000151092.12|N-glycanase 1
hg19_v2_chr1_+_165864821_165864850	0.0116515	GLI3	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr9_-_34381536_34381602	0.0116022	GLI3	ENST00000379126.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379127.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379133.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr2_-_26101314_26101363	0.0112452	GLI3	ENST00000336112.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila) 	ENST00000272341.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr15_-_65810042_65810058	0.0108886	GLI3	ENST00000321147.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr8_-_145028013_145028088	0.0101144	GLI3	ENST00000354958.2|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr16_+_29817399_29817427	0.00973895	GLI3	ENST00000545521.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr8_-_33457453_33457624	0.00948047	GLI3	ENST00000523956.1|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative) 	ENST00000256261.4|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative)
hg19_v2_chr7_-_91808845_91808845	0.00943111	GLI3	ENST00000343318.5|LRRD1|ENSG00000240720.3|leucine-rich repeats and death domain containing 1
hg19_v2_chr20_-_62587735_62587777	0.00931287	GLI3	ENST00000354216.6|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000369892.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000358711.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1
hg19_v2_chr4_+_8582287_8582314	0.00929349	GLI3	ENST00000382487.4|GPR78|ENSG00000155269.7|G protein-coupled receptor 78
hg19_v2_chr8_-_98290087_98290197	0.00917041	GLI3	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr4_+_113152978_113152989	0.00888937	GLI3	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr14_+_21423611_21423665	0.0083738	GLI3	ENST00000304625.2|RNASE2|ENSG00000169385.2|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)
hg19_v2_chr19_+_58740266_58740341	0.00806674	GLI3	ENST00000597240.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000594384.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000596825.1|ZNF544|ENSG00000198131.9|zinc finger protein 544
hg19_v2_chr10_+_127408110_127408145	0.0079823	GLI3	ENST00000356792.4|C10orf137|ENSG00000107938.13|erythroid differentiation regulatory factor 1
hg19_v2_chr17_+_73642486_73642517	0.00793798	GLI3	ENST00000579469.1|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr14_-_50778872_50778928	0.00782005	GLI3	ENST00000555610.1|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase 	ENST00000261699.4|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase
hg19_v2_chr8_+_1922024_1922069	0.00767704	GLI3	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr14_-_70826438_70826453	0.00761994	GLI3	ENST00000389912.6|COX16|ENSG00000133983.10|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
hg19_v2_chr7_-_155089251_155089375	0.00755343	GLI3	ENST00000609974.1|AC144652.1|ENSG00000273117.1|AC144652.1
hg19_v2_chr12_-_57504069_57504123	0.00739793	GLI3	ENST00000543873.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000554663.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000557635.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr3_+_14166440_14166541	0.00677199	GLI3	ENST00000306077.4|TMEM43|ENSG00000170876.7|transmembrane protein 43
hg19_v2_chr6_-_30181133_30181150	0.00640481	GLI3	ENST00000454678.2|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000434785.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr14_+_96968802_96968895	0.00636321	GLI3	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr14_+_74960423_74960479	0.00618488	GLI3	ENST00000556816.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000298818.8|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000554924.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2
hg19_v2_chr11_-_77123065_77123109	0.00611591	GLI3	ENST00000530617.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1
hg19_v2_chr11_+_60739249_60739338	0.00606932	GLI3	ENST00000542157.1|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000433107.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000452451.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000352009.5|CD6|ENSG00000013725.10|CD6 molecule
hg19_v2_chr6_-_28226984_28227011	0.00573022	GLI3	ENST00000423974.2|ZKSCAN4|ENSG00000187626.7|zinc finger with KRAB and SCAN domains 4
hg19_v2_chr12_-_2944184_2944209	0.00557571	GLI3	ENST00000337508.4|NRIP2|ENSG00000053702.10|nuclear receptor interacting protein 2
hg19_v2_chr17_+_43239231_43239297	0.00553151	GLI3	ENST00000591576.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000591070.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000592695.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr17_-_27139411_27139498	0.00552946	GLI3	ENST00000452648.3|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B
hg19_v2_chr13_+_111806055_111806080	0.00552207	GLI3	ENST00000218789.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr15_-_65809991_65810037	0.00545615	GLI3	ENST00000559526.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000358939.4|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000560665.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000321118.7|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000339244.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000300141.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr14_+_22984601_22984601	0.00526788	GLI3	ENST00000390509.1|TRAJ28|ENSG00000211861.1|T cell receptor alpha joining 28
hg19_v2_chr19_-_2256405_2256428	0.00517964	GLI3	ENST00000300961.6|JSRP1|ENSG00000167476.6|junctional sarcoplasmic reticulum protein 1
hg19_v2_chr14_+_74058410_74058410	0.00513428	GLI3	ENST00000326303.4|ACOT4|ENSG00000177465.4|acyl-CoA thioesterase 4
hg19_v2_chr11_+_46403194_46403242	0.00497138	GLI3	ENST00000395569.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395566.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr19_+_49999631_49999711	0.00487682	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr2_+_233390890_233390903	0.0048028	GLI3	ENST00000258385.3|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000536614.1|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000457943.2|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle)
hg19_v2_chr20_+_34129770_34129879	0.0046869	GLI3	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr21_+_40752170_40752303	0.00435079	GLI3	ENST00000333781.5|WRB|ENSG00000182093.10|tryptophan rich basic protein 	ENST00000541890.1|WRB|ENSG00000182093.10|tryptophan rich basic protein
hg19_v2_chr2_+_264869_264906	0.004208	GLI3	ENST00000272067.6|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000272065.5|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000407983.3|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr10_-_134145321_134145369	0.00371592	GLI3	ENST00000368625.4|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368619.3|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000456004.1|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368620.2|STK32C|ENSG00000165752.12|serine/threonine kinase 32C
hg19_v2_chr9_+_35042205_35042266	0.00353233	GLI3	ENST00000312292.5|C9orf131|ENSG00000174038.8|chromosome 9 open reading frame 131 	ENST00000378745.3|C9orf131|ENSG00000174038.8|chromosome 9 open reading frame 131
hg19_v2_chr17_+_17942594_17942606	0.00308035	GLI3	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr3_-_62860704_62860872	0.00251434	GLI3	ENST00000490353.2|CADPS|ENSG00000163618.13|Ca++-dependent secretion activator
hg19_v2_chr7_-_143059845_143059866	0.00230657	GLI3	ENST00000443739.2|FAM131B|ENSG00000159784.13|family with sequence similarity 131, member B
hg19_v2_chr8_+_22102611_22102624	0.00228266	GLI3	ENST00000306433.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr19_-_46105411_46105481	0.00220846	GLI3	ENST00000323040.4|GPR4|ENSG00000177464.4|G protein-coupled receptor 4 	ENST00000544371.1|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr2_-_71047727_71047733	0.00218739	GLI3	ENST00000272367.2|CLEC4F|ENSG00000152672.3|C-type lectin domain family 4, member F
hg19_v2_chr11_+_64085560_64085736	0.002163	GLI3	ENST00000265462.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000352435.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000347941.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5
hg19_v2_chr12_+_120933904_120933923	0.00199289	GLI3	ENST00000550178.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000550845.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549989.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000552870.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr9_+_87285257_87285311	0.001975	GLI3	ENST00000323115.4|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr10_+_51565108_51565167	0.00170279	GLI3	ENST00000438493.1|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4 	ENST00000452682.1|NCOA4|ENSG00000138293.15|nuclear receptor coactivator 4
hg19_v2_chr3_-_45957088_45957112	0.0016985	GLI3	ENST00000539217.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr19_-_23941680_23941704	0.00161032	GLI3	ENST00000402377.3|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr17_-_55822653_55822673	0.00159384	GLI3	ENST00000299415.2|AC007431.1|ENSG00000166329.2|coiled-coil domain containing 182
hg19_v2_chr19_+_58978463_58978476	0.00157318	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chr8_+_15397732_15397792	0.00148398	GLI3	ENST00000382020.4|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000506802.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000509380.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000503731.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3
hg19_v2_chr6_-_25832254_25832287	0.00142229	GLI3	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr10_-_43903217_43903267	0.00094958	GLI3	ENST00000357065.4|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr16_+_765092_765169	0.000921548	GLI3	ENST00000568223.2|METRN|ENSG00000103260.4|meteorin, glial cell differentiation regulator
hg19_v2_chr8_+_11351494_11351511	0.000730155	GLI3	ENST00000259089.4|BLK|ENSG00000136573.8|B lymphoid tyrosine kinase
hg19_v2_chr19_-_48389651_48389656	0.000340554	GLI3	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr10_+_6130946_6130960	0.000158534	GLI3	ENST00000379888.4|RBM17|ENSG00000134453.11|RNA binding motif protein 17
