hg19_v2_chr10_-_105845674_105845760	1.50259	HOXA4	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr1_-_12677714_12677737	0.875396	HOXA4	ENST00000376223.2|DHRS3|ENSG00000162496.4|dehydrogenase/reductase (SDR family) member 3
hg19_v2_chr5_-_1882858_1883003	0.815859	HOXA4	ENST00000511126.1|IRX4|ENSG00000113430.5|iroquois homeobox 4 	ENST00000231357.2|IRX4|ENSG00000113430.5|iroquois homeobox 4
hg19_v2_chr5_+_66300446_66300463	0.750681	HOXA4	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr4_+_84457250_84457268	0.546066	HOXA4	ENST00000395226.2|AGPAT9|ENSG00000138678.6|1-acylglycerol-3-phosphate O-acyltransferase 9
hg19_v2_chr4_+_84457529_84457564	0.540337	HOXA4	ENST00000264409.4|AGPAT9|ENSG00000138678.6|1-acylglycerol-3-phosphate O-acyltransferase 9
hg19_v2_chr18_+_28956740_28956846	0.536402	HOXA4	ENST00000308128.4|DSG4|ENSG00000175065.7|desmoglein 4 	ENST00000359747.4|DSG4|ENSG00000175065.7|desmoglein 4
hg19_v2_chr14_-_54423529_54423552	0.507768	HOXA4	ENST00000245451.4|BMP4|ENSG00000125378.11|bone morphogenetic protein 4 	ENST00000559087.1|BMP4|ENSG00000125378.11|bone morphogenetic protein 4
hg19_v2_chr14_-_38064198_38064239	0.440922	HOXA4	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr15_+_90744533_90744610	0.428678	HOXA4	ENST00000411539.2|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr8_-_139926236_139926269	0.425683	HOXA4	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chr1_+_81771806_81771876	0.424315	HOXA4	ENST00000370721.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370727.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370725.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370723.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370728.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370730.1|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr17_-_39538550_39538655	0.418515	HOXA4	ENST00000394001.1|KRT34|ENSG00000131737.5|keratin 34
hg19_v2_chr13_-_46716969_46717015	0.404388	HOXA4	ENST00000435666.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr11_+_128563652_128563689	0.36887	HOXA4	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chrX_-_84634737_84634754	0.32706	HOXA4	ENST00000262753.4|POF1B|ENSG00000124429.13|premature ovarian failure, 1B
hg19_v2_chr5_+_147582387_147582404	0.315898	HOXA4	ENST00000325630.2|SPINK6|ENSG00000178172.2|serine peptidase inhibitor, Kazal type 6
hg19_v2_chr5_-_38557561_38557574	0.314598	HOXA4	ENST00000511561.1|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr1_-_216978709_216978728	0.306024	HOXA4	ENST00000360012.3|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr1_-_204329013_204329086	0.28968	HOXA4	ENST00000272203.3|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6 	ENST00000414478.1|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6
hg19_v2_chr10_+_77056134_77056153	0.285973	HOXA4	ENST00000528121.1|ZNF503-AS1|ENSG00000226051.2|ZNF503 antisense RNA 1 	ENST00000416398.1|ZNF503-AS1|ENSG00000226051.2|ZNF503 antisense RNA 1
hg19_v2_chr11_+_112046190_112046245	0.284823	HOXA4	ENST00000357685.5|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2 	ENST00000393032.2|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2 	ENST00000361053.4|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2
hg19_v2_chr20_+_53092123_53092149	0.27437	HOXA4	ENST00000262593.5|DOK5|ENSG00000101134.7|docking protein 5
hg19_v2_chr2_+_177015950_177015950	0.262199	HOXA4	ENST00000306324.3|HOXD4|ENSG00000170166.5|homeobox D4
hg19_v2_chr7_+_144052381_144052509	0.243879	HOXA4	ENST00000498580.1|ARHGEF5|ENSG00000050327.10|Rho guanine nucleotide exchange factor (GEF) 5 	ENST00000056217.5|ARHGEF5|ENSG00000050327.10|Rho guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr18_-_53089723_53089786	0.242064	HOXA4	ENST00000561992.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562512.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr18_-_28742813_28742824	0.241057	HOXA4	ENST00000257197.3|DSC1|ENSG00000134765.5|desmocollin 1 	ENST00000257198.5|DSC1|ENSG00000134765.5|desmocollin 1
hg19_v2_chr12_-_24103954_24103972	0.2347	HOXA4	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr1_+_160160346_160160401	0.226922	HOXA4	ENST00000368078.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr1_+_160160283_160160292	0.220317	HOXA4	ENST00000368079.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr12_+_29376673_29376683	0.216856	HOXA4	ENST00000547116.1|FAR2|ENSG00000064763.6|fatty acyl CoA reductase 2
hg19_v2_chr12_+_29376592_29376620	0.211486	HOXA4	ENST00000182377.4|FAR2|ENSG00000064763.6|fatty acyl CoA reductase 2
hg19_v2_chr11_+_128563948_128564003	0.210157	HOXA4	ENST00000534087.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr2_+_128403720_128403747	0.201552	HOXA4	ENST00000272644.3|GPR17|ENSG00000144230.12|G protein-coupled receptor 17
hg19_v2_chr2_+_128403439_128403578	0.200924	HOXA4	ENST00000544369.1|GPR17|ENSG00000144230.12|G protein-coupled receptor 17
hg19_v2_chr11_-_69633792_69633792	0.199142	HOXA4	ENST00000334134.2|FGF3|ENSG00000186895.2|fibroblast growth factor 3
hg19_v2_chr4_-_41884582_41884593	0.196032	HOXA4	ENST00000499082.2|LINC00682|ENSG00000245870.2|long intergenic non-protein coding RNA 682
hg19_v2_chrX_+_134654540_134654591	0.191357	HOXA4	ENST00000370752.4|DDX26B|ENSG00000165359.10|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
hg19_v2_chr14_+_39734482_39734542	0.19005	HOXA4	ENST00000554392.1|CTAGE5|ENSG00000150527.12|CTAGE family, member 5 	ENST00000555716.1|CTAGE5|ENSG00000150527.12|CTAGE family, member 5 	ENST00000341749.3|CTAGE5|ENSG00000150527.12|CTAGE family, member 5 	ENST00000557038.1|CTAGE5|ENSG00000150527.12|CTAGE family, member 5
hg19_v2_chrX_-_119445306_119445411	0.188628	HOXA4	ENST00000371369.4|TMEM255A|ENSG00000125355.11|transmembrane protein 255A 	ENST00000440464.1|TMEM255A|ENSG00000125355.11|transmembrane protein 255A 	ENST00000519908.1|TMEM255A|ENSG00000125355.11|transmembrane protein 255A
hg19_v2_chr6_+_50681541_50681541	0.187842	HOXA4	ENST00000008391.3|TFAP2D|ENSG00000008197.4|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
hg19_v2_chr2_-_69098566_69098649	0.183693	HOXA4	ENST00000295379.1|BMP10|ENSG00000163217.1|bone morphogenetic protein 10
hg19_v2_chr16_+_57728701_57728748	0.180317	HOXA4	ENST00000569375.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000360716.3|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000569167.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000394337.4|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000563126.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000336825.8|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135
hg19_v2_chrX_-_119445263_119445298	0.175993	HOXA4	ENST00000309720.5|TMEM255A|ENSG00000125355.11|transmembrane protein 255A
hg19_v2_chr14_+_45605157_45605186	0.161239	HOXA4	ENST00000542564.2|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M
hg19_v2_chr18_-_24128496_24128554	0.161003	HOXA4	ENST00000417602.1|KCTD1|ENSG00000134504.8|potassium channel tetramerization domain containing 1
hg19_v2_chr17_+_37894570_37894614	0.160568	HOXA4	ENST00000394211.3|GRB7|ENSG00000141738.9|growth factor receptor-bound protein 7
hg19_v2_chr17_+_73452545_73452685	0.158261	HOXA4	ENST00000314256.7|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chrM_+_5824_5904	0.153399	HOXA4	ENST00000361624.2|MT-CO1|ENSG00000198804.2|mitochondrially encoded cytochrome c oxidase I
hg19_v2_chr2_+_53994927_53994979	0.146373	HOXA4	ENST00000295304.4|CHAC2|ENSG00000143942.4|ChaC, cation transport regulator homolog 2 (E. coli)
hg19_v2_chr12_+_56521840_56521995	0.146129	HOXA4	ENST00000394048.5|ESYT1|ENSG00000139641.8|extended synaptotagmin-like protein 1
hg19_v2_chr10_-_106240032_106240047	0.144483	HOXA4	ENST00000447860.1|RP11-127O4.3|ENSG00000225768.1|RP11-127O4.3
hg19_v2_chr4_-_41884620_41884663	0.144155	HOXA4	ENST00000504870.1|LINC00682|ENSG00000245870.2|long intergenic non-protein coding RNA 682
hg19_v2_chr19_-_1021113_1021149	0.143225	HOXA4	ENST00000333175.5|TMEM259|ENSG00000182087.8|transmembrane protein 259 	ENST00000356663.3|TMEM259|ENSG00000182087.8|transmembrane protein 259
hg19_v2_chrX_-_84634708_84634722	0.13876	HOXA4	ENST00000373145.3|POF1B|ENSG00000124429.13|premature ovarian failure, 1B
hg19_v2_chr15_+_89631647_89631725	0.13575	HOXA4	ENST00000569550.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565066.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565973.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr17_-_38956205_38956214	0.12984	HOXA4	ENST00000306658.7|KRT28|ENSG00000173908.8|keratin 28
hg19_v2_chr10_-_69455873_69455960	0.127145	HOXA4	ENST00000433211.2|CTNNA3|ENSG00000183230.12|catenin (cadherin-associated protein), alpha 3
hg19_v2_chr10_-_62332357_62332428	0.123323	HOXA4	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr14_+_45605127_45605155	0.123131	HOXA4	ENST00000556036.1|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M 	ENST00000267430.5|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M
hg19_v2_chr17_-_48785216_48785291	0.120769	HOXA4	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr3_-_52486841_52486882	0.117351	HOXA4	ENST00000496590.1|TNNC1|ENSG00000114854.3|troponin C type 1 (slow)
hg19_v2_chrX_+_37639264_37639290	0.116482	HOXA4	ENST00000378588.4|CYBB|ENSG00000165168.6|cytochrome b-245, beta polypeptide
hg19_v2_chrX_+_37639302_37639326	0.111812	HOXA4	ENST00000545017.1|CYBB|ENSG00000165168.6|cytochrome b-245, beta polypeptide 	ENST00000536160.1|CYBB|ENSG00000165168.6|cytochrome b-245, beta polypeptide
hg19_v2_chr5_-_88179302_88179319	0.109935	HOXA4	ENST00000504921.2|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr20_+_53092232_53092279	0.109156	HOXA4	ENST00000395939.1|DOK5|ENSG00000101134.7|docking protein 5
hg19_v2_chr2_+_171571827_171571861	0.108697	HOXA4	ENST00000375281.3|SP5|ENSG00000204335.3|Sp5 transcription factor
hg19_v2_chr10_-_75415825_75415873	0.107144	HOXA4	ENST00000394810.2|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr13_-_28545276_28545276	0.105246	HOXA4	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr14_-_36988882_36988898	0.103126	HOXA4	ENST00000498187.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr17_-_10421853_10421866	0.101576	HOXA4	ENST00000226207.5|MYH1|ENSG00000109061.9|myosin, heavy chain 1, skeletal muscle, adult
hg19_v2_chr7_+_95115210_95115217	0.100245	HOXA4	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr1_+_155658849_155658893	0.0986769	HOXA4	ENST00000368336.5|DAP3|ENSG00000132676.11|death associated protein 3 	ENST00000343043.3|DAP3|ENSG00000132676.11|death associated protein 3 	ENST00000421487.2|DAP3|ENSG00000132676.11|death associated protein 3 	ENST00000535183.1|DAP3|ENSG00000132676.11|death associated protein 3 	ENST00000465375.1|DAP3|ENSG00000132676.11|death associated protein 3 	ENST00000470830.1|DAP3|ENSG00000132676.11|death associated protein 3
hg19_v2_chr15_+_75080883_75080890	0.0965638	HOXA4	ENST00000567571.1|CSK|ENSG00000103653.12|c-src tyrosine kinase
hg19_v2_chr16_+_7382745_7382769	0.0960588	HOXA4	ENST00000436368.2|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000311745.5|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000355637.4|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000340209.4|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr11_-_27494309_27494328	0.091904	HOXA4	ENST00000389858.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr7_+_107110488_107110515	0.0886996	HOXA4	ENST00000304402.4|GPR22|ENSG00000172209.4|G protein-coupled receptor 22
hg19_v2_chr8_-_95449155_95449188	0.0867234	HOXA4	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chrX_+_41548220_41548243	0.0837376	HOXA4	ENST00000378142.4|GPR34|ENSG00000171659.9|G protein-coupled receptor 34
hg19_v2_chr11_-_27494279_27494308	0.0828134	HOXA4	ENST00000379214.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr5_+_66254698_66254885	0.0812703	HOXA4	ENST00000405643.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000407621.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000432426.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr12_+_50144381_50144455	0.0804568	HOXA4	ENST00000552370.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chrX_+_41548259_41548320	0.07772	HOXA4	ENST00000378138.5|GPR34|ENSG00000171659.9|G protein-coupled receptor 34
hg19_v2_chr1_+_245318279_245318297	0.0764827	HOXA4	ENST00000407071.2|KIF26B|ENSG00000162849.11|kinesin family member 26B
hg19_v2_chr18_+_13612613_13612630	0.0716883	HOXA4	ENST00000586765.1|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr6_-_55740352_55740362	0.0702659	HOXA4	ENST00000370830.3|BMP5|ENSG00000112175.6|bone morphogenetic protein 5
hg19_v2_chr5_+_147582348_147582361	0.0695167	HOXA4	ENST00000514389.1|SPINK6|ENSG00000178172.2|serine peptidase inhibitor, Kazal type 6
hg19_v2_chr6_-_55739542_55739677	0.0690016	HOXA4	ENST00000446683.2|BMP5|ENSG00000112175.6|bone morphogenetic protein 5
hg19_v2_chr18_+_3247779_3247871	0.0639341	HOXA4	ENST00000578611.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000583449.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr13_-_84456527_84456541	0.0621214	HOXA4	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr9_+_87284675_87284698	0.0611137	HOXA4	ENST00000376208.1|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2 	ENST00000304053.6|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2 	ENST00000277120.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr12_+_54447637_54447661	0.0592188	HOXA4	ENST00000609810.1|HOXC4|ENSG00000198353.6|homeobox C4 	ENST00000430889.2|HOXC4|ENSG00000273266.1|Homeobox protein Hox-C4
hg19_v2_chr12_+_72058130_72058261	0.0590137	HOXA4	ENST00000547843.1|THAP2|ENSG00000173451.2|THAP domain containing, apoptosis associated protein 2
hg19_v2_chr17_-_10452929_10452946	0.057747	HOXA4	ENST00000532183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000397183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000420805.1|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult
hg19_v2_chr2_-_80531399_80531566	0.0565537	HOXA4	ENST00000409148.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000415098.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000452811.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1
hg19_v2_chr6_-_116447283_116447325	0.0564457	HOXA4	ENST00000452729.1|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1 	ENST00000243222.4|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1
hg19_v2_chr5_+_60933634_60933637	0.0529194	HOXA4	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr2_-_80531824_80531882	0.0515495	HOXA4	ENST00000295057.3|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1
hg19_v2_chr3_-_188665428_188665478	0.0506169	HOXA4	ENST00000444488.1|TPRG1-AS1|ENSG00000234076.1|TPRG1 antisense RNA 1
hg19_v2_chr3_+_122103014_122103088	0.0503684	HOXA4	ENST00000232125.5|FAM162A|ENSG00000114023.11|family with sequence similarity 162, member A 	ENST00000477892.1|FAM162A|ENSG00000114023.11|family with sequence similarity 162, member A 	ENST00000469967.1|FAM162A|ENSG00000114023.11|family with sequence similarity 162, member A
hg19_v2_chr3_+_188664988_188665018	0.0502366	HOXA4	ENST00000433971.1|TPRG1|ENSG00000188001.5|tumor protein p63 regulated 1
hg19_v2_chr18_-_21017817_21017948	0.0493863	HOXA4	ENST00000542162.1|TMEM241|ENSG00000134490.9|transmembrane protein 241 	ENST00000383233.3|TMEM241|ENSG00000134490.9|transmembrane protein 241 	ENST00000582336.1|TMEM241|ENSG00000134490.9|transmembrane protein 241 	ENST00000450466.2|TMEM241|ENSG00000134490.9|transmembrane protein 241 	ENST00000578520.1|TMEM241|ENSG00000134490.9|transmembrane protein 241 	ENST00000399707.1|TMEM241|ENSG00000134490.9|transmembrane protein 241
hg19_v2_chr12_-_86650045_86650076	0.0477344	HOXA4	ENST00000604798.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr3_+_52448539_52448561	0.0465284	HOXA4	ENST00000461861.1|PHF7|ENSG00000010318.15|PHD finger protein 7
hg19_v2_chr6_+_152011628_152011642	0.0458659	HOXA4	ENST00000404742.1|ESR1|ENSG00000091831.17|estrogen receptor 1 	ENST00000440973.1|ESR1|ENSG00000091831.17|estrogen receptor 1
hg19_v2_chr2_-_180427304_180427323	0.0432742	HOXA4	ENST00000336917.5|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr4_-_185139062_185139114	0.0420414	HOXA4	ENST00000296741.2|ENPP6|ENSG00000164303.6|ectonucleotide pyrophosphatase/phosphodiesterase 6
hg19_v2_chr11_-_104480019_104480058	0.040444	HOXA4	ENST00000536529.1|RP11-886D15.1|ENSG00000256422.1|RP11-886D15.1	ENST00000545630.1|RP11-886D15.1|ENSG00000256422.1|RP11-886D15.1	ENST00000538641.1|RP11-886D15.1|ENSG00000256422.1|RP11-886D15.1
hg19_v2_chr5_+_40909354_40909354	0.0399738	HOXA4	ENST00000313164.9|C7|ENSG00000112936.14|complement component 7
hg19_v2_chr5_+_152870287_152870376	0.0371468	HOXA4	ENST00000340592.5|GRIA1|ENSG00000155511.13|glutamate receptor, ionotropic, AMPA 1
hg19_v2_chr1_-_156460391_156460417	0.0364391	HOXA4	ENST00000360595.3|MEF2D|ENSG00000116604.13|myocyte enhancer factor 2D
hg19_v2_chr16_+_86229728_86229787	0.0319041	HOXA4	ENST00000601250.1|LINC01082|ENSG00000269186.1|long intergenic non-protein coding RNA 1082
hg19_v2_chr1_+_26348259_26348276	0.0313958	HOXA4	ENST00000374280.3|EXTL1|ENSG00000158008.5|exostosin-like glycosyltransferase 1
hg19_v2_chr17_+_54230819_54230871	0.0308605	HOXA4	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr14_-_36989336_36989354	0.0300185	HOXA4	ENST00000522719.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr8_-_141774467_141774622	0.0282713	HOXA4	ENST00000520151.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000519024.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000519465.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr19_-_51220176_51220195	0.0279862	HOXA4	ENST00000359082.3|SHANK1|ENSG00000161681.11|SH3 and multiple ankyrin repeat domains 1 	ENST00000293441.1|SHANK1|ENSG00000161681.11|SH3 and multiple ankyrin repeat domains 1
hg19_v2_chr8_-_10512569_10512612	0.0274238	HOXA4	ENST00000382483.3|RP1L1|ENSG00000183638.5|retinitis pigmentosa 1-like 1
hg19_v2_chr7_+_32996997_32997094	0.0274182	HOXA4	ENST00000242209.4|FKBP9|ENSG00000122642.6|FK506 binding protein 9, 63 kDa 	ENST00000538336.1|FKBP9|ENSG00000122642.6|FK506 binding protein 9, 63 kDa 	ENST00000538443.1|FKBP9|ENSG00000122642.6|FK506 binding protein 9, 63 kDa
hg19_v2_chr11_+_22688150_22688192	0.025739	HOXA4	ENST00000454584.2|GAS2|ENSG00000148935.6|growth arrest-specific 2
hg19_v2_chr1_-_100643765_100643829	0.0247606	HOXA4	ENST00000370137.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000370138.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000342895.3|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39
hg19_v2_chr13_-_53422640_53422780	0.0238877	HOXA4	ENST00000338862.4|PCDH8|ENSG00000136099.9|protocadherin 8 	ENST00000377942.3|PCDH8|ENSG00000136099.9|protocadherin 8
hg19_v2_chr7_+_117251671_117251701	0.0229317	HOXA4	ENST00000468795.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr9_+_87284622_87284653	0.0226888	HOXA4	ENST00000395882.1|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr3_+_121311966_121311966	0.0225218	HOXA4	ENST00000338040.4|FBXO40|ENSG00000163833.6|F-box protein 40
hg19_v2_chr10_+_11047259_11047351	0.0222125	HOXA4	ENST00000379261.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000416382.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr1_+_167298281_167298319	0.0194997	HOXA4	ENST00000367862.5|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr2_+_87135076_87135076	0.0172957	HOXA4	ENST00000409776.2|RGPD1|ENSG00000187627.10|RANBP2-like and GRIP domain containing 1
hg19_v2_chr3_+_107241882_107241904	0.0158108	HOXA4	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr17_-_56082455_56082614	0.0157573	HOXA4	ENST00000578794.1|RP11-159D12.5|ENSG00000266086.1|Uncharacterized protein
hg19_v2_chr4_+_88754069_88754112	0.0153664	HOXA4	ENST00000395102.4|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000497649.2|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr19_-_10047219_10047235	0.0126162	HOXA4	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr5_-_13944652_13944652	0.00960621	HOXA4	ENST00000265104.4|DNAH5|ENSG00000039139.9|dynein, axonemal, heavy chain 5
hg19_v2_chr15_+_36994210_36994271	0.00904091	HOXA4	ENST00000562489.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41
hg19_v2_chr11_+_112832133_112832158	0.00699328	HOXA4	ENST00000524665.1|NCAM1|ENSG00000149294.12|neural cell adhesion molecule 1
hg19_v2_chr11_-_5364809_5364809	0.00636293	HOXA4	ENST00000300773.2|OR51B5|ENSG00000242180.2|olfactory receptor, family 51, subfamily B, member 5
hg19_v2_chr3_+_69134124_69134200	0.0061017	HOXA4	ENST00000478935.1|ARL6IP5|ENSG00000144746.6|ADP-ribosylation-like factor 6 interacting protein 5
hg19_v2_chr12_-_91398796_91398808	0.00578375	HOXA4	ENST00000261172.3|EPYC|ENSG00000083782.3|epiphycan 	ENST00000551767.1|EPYC|ENSG00000083782.3|epiphycan
hg19_v2_chr9_-_3469181_3469181	0.00564246	HOXA4	ENST00000366116.2|AL365202.1|ENSG00000203286.4|Uncharacterized protein
hg19_v2_chr4_-_109541539_109541585	0.00488296	HOXA4	ENST00000509984.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000507248.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000506795.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head)
hg19_v2_chrX_-_55024967_55024985	0.00484046	HOXA4	ENST00000545676.1|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr18_-_658244_658340	0.00373409	HOXA4	ENST00000585033.1|C18orf56|ENSG00000176912.3|chromosome 18 open reading frame 56 	ENST00000323813.3|C18orf56|ENSG00000176912.3|chromosome 18 open reading frame 56
hg19_v2_chr9_+_44867571_44867571	0.00253827	HOXA4	ENST00000377548.2|RP11-160N1.10|ENSG00000204814.5|RP11-160N1.10
hg19_v2_chr4_+_88754113_88754139	0.00206814	HOXA4	ENST00000560249.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000540395.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000511670.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000361056.3|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr11_-_13517565_13517728	0.00189217	HOXA4	ENST00000282091.1|PTH|ENSG00000152266.2|parathyroid hormone 	ENST00000529816.1|PTH|ENSG00000152266.2|parathyroid hormone
hg19_v2_chr2_+_113825547_113825547	0.00141334	HOXA4	ENST00000341010.2|IL1F10|ENSG00000136697.8|interleukin 1 family, member 10 (theta) 	ENST00000337569.3|IL1F10|ENSG00000136697.8|interleukin 1 family, member 10 (theta)
hg19_v2_chr11_+_27062860_27062929	0.000897295	HOXA4	ENST00000528583.1|BBOX1|ENSG00000129151.4|butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
hg19_v2_chr5_+_69321074_69321200	0.000892952	HOXA4	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr5_+_140535577_140535577	0.000679363	HOXA4	ENST00000539533.1|PCDHB17|ENSG00000255622.1|Protocadherin-psi1; Uncharacterized protein
hg19_v2_chr4_+_66536248_66536345	0.000153799	HOXA4	ENST00000514260.1|RP11-807H7.1|ENSG00000250846.2|RP11-807H7.1	ENST00000507117.1|RP11-807H7.1|ENSG00000250846.2|RP11-807H7.1
