hg19_v2_chr20_+_58179582_58179603	0.970181	HOXC11	ENST00000371015.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3 	ENST00000395639.4|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr8_+_104831472_104831510	0.679869	HOXC11	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr1_+_62439037_62439047	0.559683	HOXC11	ENST00000545929.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr12_-_28124903_28124957	0.537823	HOXC11	ENST00000395872.1|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone 	ENST00000354417.3|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone 	ENST00000201015.4|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone
hg19_v2_chr9_-_124989804_124989865	0.511095	HOXC11	ENST00000373755.2|LHX6|ENSG00000106852.11|LIM homeobox 6 	ENST00000373754.2|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr20_+_52105495_52105495	0.50801	HOXC11	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr7_-_41742697_41742714	0.438291	HOXC11	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr12_-_52828147_52828309	0.405389	HOXC11	ENST00000252245.5|KRT75|ENSG00000170454.5|keratin 75
hg19_v2_chr17_-_39646116_39646164	0.378166	HOXC11	ENST00000328119.6|KRT36|ENSG00000126337.9|keratin 36
hg19_v2_chr8_+_104831554_104831615	0.371991	HOXC11	ENST00000408894.2|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr18_-_52989217_52989233	0.366407	HOXC11	ENST00000570287.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr16_+_57653989_57654022	0.354201	HOXC11	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr16_+_57653854_57653968	0.353408	HOXC11	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr1_-_12677714_12677737	0.325744	HOXC11	ENST00000376223.2|DHRS3|ENSG00000162496.4|dehydrogenase/reductase (SDR family) member 3
hg19_v2_chrX_-_133792480_133792522	0.315768	HOXC11	ENST00000359237.4|PLAC1|ENSG00000170965.5|placenta-specific 1
hg19_v2_chr9_-_124990680_124990719	0.310552	HOXC11	ENST00000541397.2|LHX6|ENSG00000106852.11|LIM homeobox 6 	ENST00000560485.1|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr5_-_82969405_82969556	0.298445	HOXC11	ENST00000510978.1|HAPLN1|ENSG00000145681.6|hyaluronan and proteoglycan link protein 1
hg19_v2_chr9_+_12693336_12693460	0.293544	HOXC11	ENST00000381137.2|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1 	ENST00000388918.5|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1
hg19_v2_chr7_+_128784712_128784712	0.292425	HOXC11	ENST00000289407.4|TSPAN33|ENSG00000158457.4|tetraspanin 33
hg19_v2_chr4_+_144354644_144354734	0.263345	HOXC11	ENST00000512843.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr15_-_68497657_68497899	0.261595	HOXC11	ENST00000448060.2|CALML4|ENSG00000129007.10|calmodulin-like 4 	ENST00000467889.1|CALML4|ENSG00000129007.10|calmodulin-like 4
hg19_v2_chr12_-_123201337_123201439	0.254812	HOXC11	ENST00000528880.2|HCAR3|ENSG00000255398.2|hydroxycarboxylic acid receptor 3
hg19_v2_chr18_-_52989525_52989623	0.23537	HOXC11	ENST00000457482.3|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr12_-_95510743_95510753	0.224115	HOXC11	ENST00000551521.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr7_+_35756092_35756105	0.193784	HOXC11	ENST00000458087.3|AC018647.3|ENSG00000227544.4|AC018647.3
hg19_v2_chr4_-_25865159_25865382	0.189522	HOXC11	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr7_+_35756186_35756202	0.189368	HOXC11	ENST00000430518.1|AC018647.3|ENSG00000227544.4|AC018647.3
hg19_v2_chr17_-_39684550_39684567	0.18846	HOXC11	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chrX_+_105192423_105192431	0.186318	HOXC11	ENST00000540278.1|NRK|ENSG00000123572.12|Nik related kinase
hg19_v2_chr6_+_15246501_15246527	0.166501	HOXC11	ENST00000341776.2|JARID2|ENSG00000008083.9|jumonji, AT rich interactive domain 2
hg19_v2_chr17_-_41739283_41739322	0.163969	HOXC11	ENST00000393661.2|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000318579.4|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr5_-_115872142_115872154	0.159452	HOXC11	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr9_-_124976185_124976212	0.158184	HOXC11	ENST00000464484.2|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr13_-_103719196_103719196	0.151934	HOXC11	ENST00000245312.3|SLC10A2|ENSG00000125255.5|solute carrier family 10 (sodium/bile acid cotransporter), member 2
hg19_v2_chr8_-_21669826_21669869	0.150713	HOXC11	ENST00000517328.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr13_+_109248500_109248524	0.150079	HOXC11	ENST00000356711.2|MYO16|ENSG00000041515.11|myosin XVI
hg19_v2_chr9_-_124976154_124976177	0.148107	HOXC11	ENST00000482062.1|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr14_-_57277163_57277168	0.14344	HOXC11	ENST00000555006.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr7_-_27205136_27205164	0.143306	HOXC11	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chr6_+_12290586_12290600	0.14296	HOXC11	ENST00000379375.5|EDN1|ENSG00000078401.6|endothelin 1
hg19_v2_chr4_-_87028478_87028514	0.140854	HOXC11	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr14_-_72458326_72458326	0.138169	HOXC11	ENST00000542853.1|AC005477.1|ENSG00000257040.1|AC005477.1
hg19_v2_chr5_-_76935513_76935513	0.132771	HOXC11	ENST00000306422.3|OTP|ENSG00000171540.6|orthopedia homeobox
hg19_v2_chr17_-_46657473_46657473	0.131145	HOXC11	ENST00000332503.5|HOXB4|ENSG00000182742.5|homeobox B4
hg19_v2_chr4_+_95972822_95972844	0.129617	HOXC11	ENST00000509540.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB 	ENST00000440890.2|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr1_+_46152886_46153034	0.127414	HOXC11	ENST00000372025.4|TMEM69|ENSG00000159596.6|transmembrane protein 69
hg19_v2_chr1_-_200379129_200379174	0.125773	HOXC11	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr2_-_136678123_136678165	0.120837	HOXC11	ENST00000422708.1|DARS|ENSG00000115866.6|aspartyl-tRNA synthetase
hg19_v2_chr11_+_63606373_63606418	0.119973	HOXC11	ENST00000402010.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000315032.8|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377809.4|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000413835.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377810.3|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2
hg19_v2_chr1_-_200379180_200379191	0.117995	HOXC11	ENST00000294740.3|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr2_+_27440229_27440280	0.116822	HOXC11	ENST00000264705.4|CAD|ENSG00000084774.9|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENST00000403525.1|CAD|ENSG00000084774.9|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
hg19_v2_chr7_-_81399411_81399432	0.11501	HOXC11	ENST00000423064.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr13_+_97928395_97928458	0.114842	HOXC11	ENST00000445661.2|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr11_+_34663913_34663945	0.113103	HOXC11	ENST00000532302.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chrX_+_65384182_65384231	0.109553	HOXC11	ENST00000441993.2|HEPH|ENSG00000089472.12|hephaestin 	ENST00000419594.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr2_+_166428839_166428859	0.109357	HOXC11	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chrX_+_65382433_65382486	0.107166	HOXC11	ENST00000374727.3|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr19_-_19626838_19626991	0.103701	HOXC11	ENST00000360913.3|TSSK6|ENSG00000178093.12|testis-specific serine kinase 6
hg19_v2_chr8_-_20040601_20040630	0.103404	HOXC11	ENST00000265808.7|SLC18A1|ENSG00000036565.10|solute carrier family 18 (vesicular monoamine transporter), member 1 	ENST00000522513.1|SLC18A1|ENSG00000036565.10|solute carrier family 18 (vesicular monoamine transporter), member 1
hg19_v2_chr8_-_20040638_20040717	0.102808	HOXC11	ENST00000519026.1|SLC18A1|ENSG00000036565.10|solute carrier family 18 (vesicular monoamine transporter), member 1 	ENST00000276373.5|SLC18A1|ENSG00000036565.10|solute carrier family 18 (vesicular monoamine transporter), member 1 	ENST00000440926.1|SLC18A1|ENSG00000036565.10|solute carrier family 18 (vesicular monoamine transporter), member 1 	ENST00000437980.1|SLC18A1|ENSG00000036565.10|solute carrier family 18 (vesicular monoamine transporter), member 1
hg19_v2_chrX_+_65384052_65384112	0.102432	HOXC11	ENST00000336279.5|HEPH|ENSG00000089472.12|hephaestin 	ENST00000458621.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr20_+_58713514_58713554	0.0997519	HOXC11	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chr13_-_28545276_28545276	0.0990704	HOXC11	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chrX_+_14547632_14547682	0.0969665	HOXC11	ENST00000218075.4|GLRA2|ENSG00000101958.9|glycine receptor, alpha 2
hg19_v2_chr2_-_51259229_51259279	0.095848	HOXC11	ENST00000405472.3|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr3_+_15045419_15045433	0.0949851	HOXC11	ENST00000406272.2|NR2C2|ENSG00000177463.11|nuclear receptor subfamily 2, group C, member 2
hg19_v2_chr20_+_42984330_42984445	0.0946236	HOXC11	ENST00000316673.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609795.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000457232.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000609262.1|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr2_-_51259292_51259315	0.0933527	HOXC11	ENST00000401669.2|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr8_-_109799793_109799844	0.0914873	HOXC11	ENST00000297459.3|TMEM74|ENSG00000164841.4|transmembrane protein 74
hg19_v2_chr1_+_209859510_209859550	0.0900072	HOXC11	ENST00000367028.2|HSD11B1|ENSG00000117594.5|hydroxysteroid (11-beta) dehydrogenase 1 	ENST00000261465.1|HSD11B1|ENSG00000117594.5|hydroxysteroid (11-beta) dehydrogenase 1
hg19_v2_chr18_+_61223393_61223393	0.08937	HOXC11	ENST00000269491.1|SERPINB12|ENSG00000166634.2|serpin peptidase inhibitor, clade B (ovalbumin), member 12 	ENST00000382768.1|SERPINB12|ENSG00000166634.2|serpin peptidase inhibitor, clade B (ovalbumin), member 12
hg19_v2_chr19_+_1440838_1440838	0.0885219	HOXC11	ENST00000594262.1|AC027307.3|ENSG00000268798.1|Uncharacterized protein
hg19_v2_chr17_-_38821373_38821440	0.0876691	HOXC11	ENST00000394052.3|KRT222|ENSG00000213424.4|keratin 222
hg19_v2_chr14_+_97925151_97925207	0.0870375	HOXC11	ENST00000554862.1|CTD-2506J14.1|ENSG00000246084.2|CTD-2506J14.1	ENST00000554260.1|CTD-2506J14.1|ENSG00000246084.2|CTD-2506J14.1	ENST00000499910.2|CTD-2506J14.1|ENSG00000246084.2|CTD-2506J14.1
hg19_v2_chr3_-_45838011_45838034	0.0861468	HOXC11	ENST00000358525.4|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20 	ENST00000413781.1|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20
hg19_v2_chr14_-_57272366_57272391	0.0860944	HOXC11	ENST00000554788.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000554845.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000408990.3|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr22_+_39916558_39916579	0.0860456	HOXC11	ENST00000337304.2|ATF4|ENSG00000128272.10|activating transcription factor 4 	ENST00000396680.1|ATF4|ENSG00000128272.10|activating transcription factor 4
hg19_v2_chr9_+_130026756_130026871	0.0846853	HOXC11	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr3_-_79816965_79817094	0.0831952	HOXC11	ENST00000464233.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr12_+_70219052_70219096	0.0823009	HOXC11	ENST00000552032.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like 	ENST00000547771.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like
hg19_v2_chr1_+_26485511_26485551	0.0818336	HOXC11	ENST00000374268.3|FAM110D|ENSG00000197245.4|family with sequence similarity 110, member D
hg19_v2_chr1_+_209878182_209878203	0.081507	HOXC11	ENST00000367027.3|HSD11B1|ENSG00000117594.5|hydroxysteroid (11-beta) dehydrogenase 1
hg19_v2_chr3_-_45837959_45837975	0.0782811	HOXC11	ENST00000353278.4|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20 	ENST00000456124.2|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20
hg19_v2_chrX_+_99899180_99899215	0.0778426	HOXC11	ENST00000373004.3|SRPX2|ENSG00000102359.5|sushi-repeat containing protein, X-linked 2
hg19_v2_chr12_-_24102576_24102637	0.0777179	HOXC11	ENST00000537393.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000309359.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000381381.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000451604.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr12_-_18243119_18243133	0.0757572	HOXC11	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr15_+_69854027_69854062	0.0748803	HOXC11	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr8_-_114449112_114449328	0.0736506	HOXC11	ENST00000455883.2|CSMD3|ENSG00000164796.13|CUB and Sushi multiple domains 3 	ENST00000352409.3|CSMD3|ENSG00000164796.13|CUB and Sushi multiple domains 3 	ENST00000297405.5|CSMD3|ENSG00000164796.13|CUB and Sushi multiple domains 3
hg19_v2_chr12_+_1800179_1800250	0.0724047	HOXC11	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr11_+_34664014_34664174	0.0714535	HOXC11	ENST00000527935.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr13_-_46626847_46626899	0.0664633	HOXC11	ENST00000242848.4|ZC3H13|ENSG00000123200.12|zinc finger CCCH-type containing 13 	ENST00000282007.3|ZC3H13|ENSG00000123200.12|zinc finger CCCH-type containing 13
hg19_v2_chr9_-_133814455_133814520	0.0661862	HOXC11	ENST00000448616.1|FIBCD1|ENSG00000130720.8|fibrinogen C domain containing 1
hg19_v2_chr8_+_26150628_26150749	0.0632618	HOXC11	ENST00000523925.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000315985.7|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr11_-_118305921_118305921	0.0629999	HOXC11	ENST00000532619.1|RP11-770J1.4|ENSG00000255384.1|RP11-770J1.4
hg19_v2_chr19_+_4402659_4402714	0.0629092	HOXC11	ENST00000301280.5|CHAF1A|ENSG00000167670.11|chromatin assembly factor 1, subunit A (p150) 	ENST00000585854.1|CHAF1A|ENSG00000167670.11|chromatin assembly factor 1, subunit A (p150)
hg19_v2_chrX_-_100604184_100604184	0.0628816	HOXC11	ENST00000372902.3|TIMM8A|ENSG00000126953.5|translocase of inner mitochondrial membrane 8 homolog A (yeast)
hg19_v2_chr1_+_110993795_110993824	0.0625725	HOXC11	ENST00000271331.3|PROK1|ENSG00000143125.5|prokineticin 1
hg19_v2_chr12_-_71148357_71148373	0.0625477	HOXC11	ENST00000378778.1|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R
hg19_v2_chr15_+_36887069_36887101	0.0620094	HOXC11	ENST00000566807.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000567389.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000562877.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41
hg19_v2_chr1_+_23345943_23346051	0.0614439	HOXC11	ENST00000400181.4|KDM1A|ENSG00000004487.11|lysine (K)-specific demethylase 1A 	ENST00000542151.1|KDM1A|ENSG00000004487.11|lysine (K)-specific demethylase 1A
hg19_v2_chr19_+_36036583_36036597	0.0614147	HOXC11	ENST00000392205.1|TMEM147|ENSG00000105677.7|transmembrane protein 147
hg19_v2_chr4_+_169013666_169013697	0.0607896	HOXC11	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr12_-_71148413_71148515	0.0604472	HOXC11	ENST00000440835.2|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R 	ENST00000549308.1|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R 	ENST00000550661.1|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R
hg19_v2_chr1_+_23345930_23345941	0.0603103	HOXC11	ENST00000356634.3|KDM1A|ENSG00000004487.11|lysine (K)-specific demethylase 1A
hg19_v2_chr10_+_114709999_114710031	0.0595505	HOXC11	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr12_+_52203789_52203789	0.058823	HOXC11	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr17_+_7211656_7211698	0.0587718	HOXC11	ENST00000416016.2|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr3_+_173116225_173116242	0.0580904	HOXC11	ENST00000457714.1|NLGN1|ENSG00000169760.13|neuroligin 1
hg19_v2_chr7_-_11871815_11871831	0.0580471	HOXC11	ENST00000423059.4|THSD7A|ENSG00000005108.11|thrombospondin, type I, domain containing 7A
hg19_v2_chrM_+_4431_4475	0.0569072	HOXC11	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr14_+_56127989_56128008	0.0568738	HOXC11	ENST00000555573.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr2_-_207023918_207023981	0.052972	HOXC11	ENST00000455934.2|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000449699.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000454195.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr1_-_94147385_94147407	0.0521769	HOXC11	ENST00000260502.6|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr17_+_7461580_7461610	0.0506553	HOXC11	ENST00000483039.1|TNFSF13|ENSG00000161955.12|tumor necrosis factor (ligand) superfamily, member 13 	ENST00000396542.1|TNFSF13|ENSG00000161955.12|tumor necrosis factor (ligand) superfamily, member 13
hg19_v2_chr2_-_166930131_166930149	0.0483813	HOXC11	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr7_-_108209897_108209913	0.0481257	HOXC11	ENST00000313516.5|THAP5|ENSG00000177683.9|THAP domain containing 5
hg19_v2_chr10_-_96829246_96829259	0.0474942	HOXC11	ENST00000371270.3|CYP2C8|ENSG00000138115.9|cytochrome P450, family 2, subfamily C, polypeptide 8 	ENST00000535898.1|CYP2C8|ENSG00000138115.9|cytochrome P450, family 2, subfamily C, polypeptide 8 	ENST00000539050.1|CYP2C8|ENSG00000138115.9|cytochrome P450, family 2, subfamily C, polypeptide 8
hg19_v2_chr11_-_132813566_132813624	0.0463002	HOXC11	ENST00000331898.7|OPCML|ENSG00000183715.9|opioid binding protein/cell adhesion molecule-like
hg19_v2_chr15_+_76352178_76352306	0.0454607	HOXC11	ENST00000388942.3|C15orf27|ENSG00000169758.8|chromosome 15 open reading frame 27
hg19_v2_chr14_-_57277178_57277203	0.0449728	HOXC11	ENST00000339475.5|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000554559.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000555804.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr3_+_63428982_63429027	0.0441975	HOXC11	ENST00000479198.1|SYNPR|ENSG00000163630.6|synaptoporin 	ENST00000460711.1|SYNPR|ENSG00000163630.6|synaptoporin 	ENST00000465156.1|SYNPR|ENSG00000163630.6|synaptoporin
hg19_v2_chr7_-_81399329_81399347	0.0428854	HOXC11	ENST00000453411.1|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor) 	ENST00000444829.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr19_+_36036477_36036564	0.0424402	HOXC11	ENST00000222284.5|TMEM147|ENSG00000105677.7|transmembrane protein 147 	ENST00000392204.2|TMEM147|ENSG00000105677.7|transmembrane protein 147
hg19_v2_chr7_-_20826504_20826526	0.0422081	HOXC11	ENST00000418710.2|SP8|ENSG00000164651.12|Sp8 transcription factor 	ENST00000361443.4|SP8|ENSG00000164651.12|Sp8 transcription factor
hg19_v2_chr7_-_151217001_151217019	0.041438	HOXC11	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr17_+_58018269_58018269	0.0398142	HOXC11	ENST00000591035.1|RP11-178C3.1|ENSG00000267318.1|Uncharacterized protein
hg19_v2_chr9_-_133814527_133814555	0.0380125	HOXC11	ENST00000451466.1|FIBCD1|ENSG00000130720.8|fibrinogen C domain containing 1
hg19_v2_chr3_-_20053741_20053822	0.0373082	HOXC11	ENST00000389050.4|PP2D1|ENSG00000183977.9|protein phosphatase 2C-like domain containing 1
hg19_v2_chr1_+_167298281_167298319	0.0367973	HOXC11	ENST00000367862.5|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr12_-_52779433_52779437	0.0341074	HOXC11	ENST00000257951.3|KRT84|ENSG00000161849.3|keratin 84
hg19_v2_chr17_-_77924627_77924661	0.0332213	HOXC11	ENST00000572862.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000573782.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000574427.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000570373.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000340848.7|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000576768.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr14_+_73706308_73706333	0.029338	HOXC11	ENST00000554301.1|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000555445.1|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein
hg19_v2_chr6_+_152011628_152011642	0.0285677	HOXC11	ENST00000404742.1|ESR1|ENSG00000091831.17|estrogen receptor 1 	ENST00000440973.1|ESR1|ENSG00000091831.17|estrogen receptor 1
hg19_v2_chr18_+_63417864_63417889	0.0274955	HOXC11	ENST00000536984.2|CDH7|ENSG00000081138.9|cadherin 7, type 2
hg19_v2_chr16_-_21663950_21663981	0.0269577	HOXC11	ENST00000268389.4|IGSF6|ENSG00000140749.7|immunoglobulin superfamily, member 6
hg19_v2_chr12_+_64173583_64173664	0.0264646	HOXC11	ENST00000261234.6|TMEM5|ENSG00000118600.7|transmembrane protein 5
hg19_v2_chr6_-_31745085_31745112	0.0262876	HOXC11	ENST00000375686.3|VWA7|ENSG00000204396.6|von Willebrand factor A domain containing 7 	ENST00000447450.1|VWA7|ENSG00000204396.6|von Willebrand factor A domain containing 7
hg19_v2_chr6_+_127898312_127898326	0.0260406	HOXC11	ENST00000329722.7|C6orf58|ENSG00000184530.8|chromosome 6 open reading frame 58
hg19_v2_chr10_-_13523073_13523073	0.0258253	HOXC11	ENST00000440282.1|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr4_-_174451370_174451387	0.0251408	HOXC11	ENST00000359562.4|HAND2|ENSG00000164107.7|heart and neural crest derivatives expressed 2
hg19_v2_chr1_+_151739131_151739177	0.0242995	HOXC11	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr6_-_31745037_31745083	0.0234366	HOXC11	ENST00000375688.4|VWA7|ENSG00000204396.6|von Willebrand factor A domain containing 7
hg19_v2_chr15_+_49715293_49715448	0.0228932	HOXC11	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr2_+_177015122_177015122	0.0216146	HOXC11	ENST00000468418.3|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr18_-_74728998_74729051	0.0205082	HOXC11	ENST00000359645.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397875.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397869.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578193.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578873.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397866.4|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000528160.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000527041.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000526111.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397865.5|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000382582.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr2_+_176987088_176987088	0.0191845	HOXC11	ENST00000249499.6|HOXD9|ENSG00000128709.10|homeobox D9
hg19_v2_chr12_-_111358372_111358389	0.01837	HOXC11	ENST00000548438.1|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow 	ENST00000228841.8|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow
hg19_v2_chr3_-_57326704_57326721	0.0178445	HOXC11	ENST00000487349.1|ASB14|ENSG00000239388.4|ankyrin repeat and SOCS box containing 14 	ENST00000389601.3|ASB14|ENSG00000239388.4|ankyrin repeat and SOCS box containing 14
hg19_v2_chr8_+_76452097_76452126	0.0169293	HOXC11	ENST00000396423.2|HNF4G|ENSG00000164749.7|hepatocyte nuclear factor 4, gamma
hg19_v2_chr9_+_95736758_95736771	0.0157906	HOXC11	ENST00000337352.6|FGD3|ENSG00000127084.13|FYVE, RhoGEF and PH domain containing 3
hg19_v2_chr5_-_36301984_36302010	0.0157856	HOXC11	ENST00000502994.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000515759.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000296604.3|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like
hg19_v2_chr9_-_16705069_16705086	0.0157247	HOXC11	ENST00000471301.2|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr2_-_209010874_209010892	0.014664	HOXC11	ENST00000260988.4|CRYGB|ENSG00000182187.3|crystallin, gamma B
hg19_v2_chr16_+_67906919_67906937	0.0146616	HOXC11	ENST00000358933.5|EDC4|ENSG00000038358.10|enhancer of mRNA decapping 4
hg19_v2_chr6_-_91296737_91296821	0.0142563	HOXC11	ENST00000369332.3|MAP3K7|ENSG00000135341.13|mitogen-activated protein kinase kinase kinase 7 	ENST00000369329.3|MAP3K7|ENSG00000135341.13|mitogen-activated protein kinase kinase kinase 7
hg19_v2_chr12_+_130646999_130647019	0.0134702	HOXC11	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chrX_-_10851762_10851782	0.0122756	HOXC11	ENST00000380785.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome) 	ENST00000380787.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr19_-_19626351_19626494	0.0112549	HOXC11	ENST00000585580.3|TSSK6|ENSG00000178093.12|testis-specific serine kinase 6
hg19_v2_chr7_-_81399355_81399373	0.0108099	HOXC11	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr2_+_128293323_128293378	0.00997469	HOXC11	ENST00000389524.4|MYO7B|ENSG00000169994.14|myosin VIIB 	ENST00000428314.1|MYO7B|ENSG00000169994.14|myosin VIIB
hg19_v2_chr3_-_51813009_51813009	0.00969771	HOXC11	ENST00000398780.3|IQCF6|ENSG00000214686.3|IQ motif containing F6
hg19_v2_chr5_-_169626104_169626145	0.00936696	HOXC11	ENST00000520275.1|CTB-27N1.1|ENSG00000249601.2|CTB-27N1.1	ENST00000506431.2|CTB-27N1.1|ENSG00000249601.2|CTB-27N1.1
hg19_v2_chr1_-_9129631_9129664	0.0078717	HOXC11	ENST00000377414.3|SLC2A5|ENSG00000142583.13|solute carrier family 2 (facilitated glucose/fructose transporter), member 5
hg19_v2_chr10_-_24770632_24770632	0.00689131	HOXC11	ENST00000596413.1|AL353583.1|ENSG00000269879.1|AL353583.1
hg19_v2_chr7_-_93519471_93519485	0.00680106	HOXC11	ENST00000451238.1|TFPI2|ENSG00000105825.7|tissue factor pathway inhibitor 2
hg19_v2_chr8_-_59412717_59412795	0.00584325	HOXC11	ENST00000301645.3|CYP7A1|ENSG00000167910.3|cytochrome P450, family 7, subfamily A, polypeptide 1
hg19_v2_chr15_-_54025300_54025380	0.00569293	HOXC11	ENST00000559418.1|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr6_-_91296602_91296721	0.00538316	HOXC11	ENST00000369325.3|MAP3K7|ENSG00000135341.13|mitogen-activated protein kinase kinase kinase 7 	ENST00000369327.3|MAP3K7|ENSG00000135341.13|mitogen-activated protein kinase kinase kinase 7
hg19_v2_chr1_+_75600567_75600567	0.00534558	HOXC11	ENST00000356261.3|LHX8|ENSG00000162624.10|LIM homeobox 8
hg19_v2_chr7_+_114055052_114055378	0.00453215	HOXC11	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr1_+_66999268_66999313	0.00285823	HOXC11	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr2_-_157198860_157198978	0.00171921	HOXC11	ENST00000409572.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr6_-_137815524_137815537	0.00146551	HOXC11	ENST00000367734.2|OLIG3|ENSG00000177468.5|oligodendrocyte transcription factor 3
hg19_v2_chr10_+_26505179_26505236	0.0012269	HOXC11	ENST00000376261.3|GAD2|ENSG00000136750.7|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)
hg19_v2_chr5_+_159656437_159656517	0.00106211	HOXC11	ENST00000402432.3|FABP6|ENSG00000170231.11|fatty acid binding protein 6, ileal
hg19_v2_chr6_+_26156551_26156564	0.00100777	HOXC11	ENST00000304218.3|HIST1H1E|ENSG00000168298.4|histone cluster 1, H1e
hg19_v2_chr1_+_87794150_87794172	0.000961638	HOXC11	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
