hg19_v2_chr18_+_29027696_29027774	1.2761	LHX2	ENST00000257189.4|DSG3|ENSG00000134757.4|desmoglein 3
hg19_v2_chr6_+_125524785_125524861	0.418586	LHX2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr1_+_160370344_160370406	0.366742	LHX2	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr1_+_62439037_62439047	0.292701	LHX2	ENST00000545929.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr2_+_68961934_68961975	0.281951	LHX2	ENST00000409202.3|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr2_+_68961905_68961932	0.277773	LHX2	ENST00000295381.3|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr18_+_34124507_34124520	0.275315	LHX2	ENST00000591635.1|FHOD3|ENSG00000134775.11|formin homology 2 domain containing 3
hg19_v2_chrX_+_105937068_105937091	0.273669	LHX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr6_+_30848557_30848645	0.273322	LHX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr4_-_90756769_90756846	0.261693	LHX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr12_+_122688090_122688284	0.249361	LHX2	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr10_-_116286656_116286693	0.242054	LHX2	ENST00000428430.1|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000369266.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000392952.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr7_-_22234381_22234430	0.225848	LHX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr5_-_35938674_35938881	0.188854	LHX2	ENST00000397366.1|CAPSL|ENSG00000152611.7|calcyphosine-like 	ENST00000513623.1|CAPSL|ENSG00000152611.7|calcyphosine-like 	ENST00000514524.1|CAPSL|ENSG00000152611.7|calcyphosine-like 	ENST00000397367.2|CAPSL|ENSG00000152611.7|calcyphosine-like
hg19_v2_chr4_+_69313145_69313167	0.182441	LHX2	ENST00000305363.4|TMPRSS11E|ENSG00000087128.5|transmembrane protease, serine 11E
hg19_v2_chr2_+_68962014_68962095	0.181141	LHX2	ENST00000467265.1|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr11_-_104972158_104972190	0.151786	LHX2	ENST00000598974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000593315.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000594519.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000415981.2|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525374.1|CARD16|ENSG00000204397.3|caspase recruitment domain family, member 16 	ENST00000375707.1|CARD17|ENSG00000255221.2|caspase recruitment domain family, member 17
hg19_v2_chr1_-_183560011_183560033	0.14827	LHX2	ENST00000367536.1|NCF2|ENSG00000116701.10|neutrophil cytosolic factor 2
hg19_v2_chr18_-_19994830_19994830	0.148102	LHX2	ENST00000525417.1|CTAGE1|ENSG00000212710.3|cutaneous T-cell lymphoma-associated antigen 1
hg19_v2_chr14_-_22005343_22005364	0.140115	LHX2	ENST00000327430.3|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr15_-_51535208_51535261	0.134512	LHX2	ENST00000405913.3|CYP19A1|ENSG00000137869.9|cytochrome P450, family 19, subfamily A, polypeptide 1 	ENST00000559878.1|CYP19A1|ENSG00000137869.9|cytochrome P450, family 19, subfamily A, polypeptide 1
hg19_v2_chr19_+_42212501_42212521	0.124802	LHX2	ENST00000398599.4|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5
hg19_v2_chr4_-_159956333_159956366	0.12457	LHX2	ENST00000434826.2|C4orf45|ENSG00000164123.6|chromosome 4 open reading frame 45
hg19_v2_chr10_+_95326416_95326454	0.123832	LHX2	ENST00000371481.4|FFAR4|ENSG00000186188.6|free fatty acid receptor 4 	ENST00000371483.4|FFAR4|ENSG00000186188.6|free fatty acid receptor 4 	ENST00000604414.1|FFAR4|ENSG00000186188.6|free fatty acid receptor 4
hg19_v2_chr14_-_34420259_34420291	0.116385	LHX2	ENST00000250457.3|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3 	ENST00000547327.2|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3
hg19_v2_chr5_-_78281775_78281910	0.108323	LHX2	ENST00000396151.3|ARSB|ENSG00000113273.11|arylsulfatase B 	ENST00000565165.1|ARSB|ENSG00000113273.11|arylsulfatase B
hg19_v2_chr3_-_191000172_191000209	0.104733	LHX2	ENST00000427544.2|UTS2B|ENSG00000188958.5|urotensin 2B
hg19_v2_chr1_+_160709076_160709094	0.101649	LHX2	ENST00000359331.4|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000495334.1|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chrX_-_11284095_11284131	0.101236	LHX2	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr4_-_153332886_153333030	0.0904828	LHX2	ENST00000603841.1|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr2_+_145780725_145780735	0.08641	LHX2	ENST00000451478.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr6_+_26199737_26199754	0.0862742	LHX2	ENST00000359985.1|HIST1H2BF|ENSG00000197846.3|histone cluster 1, H2bf
hg19_v2_chr4_+_147096837_147096912	0.0862527	LHX2	ENST00000296581.5|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000502781.1|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr6_-_26199499_26199528	0.0860063	LHX2	ENST00000377831.5|HIST1H3D|ENSG00000197409.6|histone cluster 1, H3d
hg19_v2_chr1_+_244515930_244515950	0.085453	LHX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr7_-_112758589_112758619	0.0853187	LHX2	ENST00000413744.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998 	ENST00000439551.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998 	ENST00000441359.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998
hg19_v2_chr13_+_73632897_73632930	0.0850276	LHX2	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr6_-_66417107_66417125	0.0849275	LHX2	ENST00000370621.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000370618.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000503581.1|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000393380.2|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila)
hg19_v2_chr1_+_160709055_160709074	0.0822168	LHX2	ENST00000368043.3|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000368042.3|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000458602.2|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000458104.2|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr17_+_61086917_61086921	0.0795264	LHX2	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr6_+_130339710_130339745	0.0791178	LHX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr11_-_104827425_104827425	0.0789389	LHX2	ENST00000393150.3|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr4_+_88532028_88532028	0.0783408	LHX2	ENST00000282478.7|DSPP|ENSG00000152591.8|dentin sialophosphoprotein
hg19_v2_chr14_+_22694606_22694646	0.0741727	LHX2	ENST00000390463.3|TRAV36DV7|ENSG00000211815.3|T cell receptor alpha variable 36/delta variable 7
hg19_v2_chr6_-_26199471_26199494	0.073836	LHX2	ENST00000341023.1|HIST1H2AD|ENSG00000196866.2|histone cluster 1, H2ad
hg19_v2_chr4_+_128554081_128554121	0.0734415	LHX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr8_+_52730143_52730143	0.0726539	LHX2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr17_-_7760457_7760587	0.072649	LHX2	ENST00000576384.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr4_-_120243545_120243562	0.0706424	LHX2	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr2_+_145780767_145780811	0.0658187	LHX2	ENST00000599358.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596278.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596747.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000608652.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000609705.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000608432.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596970.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602041.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000601578.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596034.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000414195.2|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000594837.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr3_+_35722487_35722507	0.0655726	LHX2	ENST00000441454.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr12_-_100656134_100656134	0.0641733	LHX2	ENST00000548313.1|DEPDC4|ENSG00000166153.12|DEP domain containing 4
hg19_v2_chr9_-_139137648_139137687	0.0636663	LHX2	ENST00000358701.5|QSOX2|ENSG00000165661.11|quiescin Q6 sulfhydryl oxidase 2
hg19_v2_chr11_+_27076764_27076822	0.0622786	LHX2	ENST00000525090.1|BBOX1|ENSG00000129151.4|butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
hg19_v2_chr11_+_63606373_63606418	0.0617351	LHX2	ENST00000402010.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000315032.8|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377809.4|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000413835.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377810.3|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2
hg19_v2_chr1_+_152975488_152975498	0.0612653	LHX2	ENST00000542696.1|SPRR3|ENSG00000163209.10|small proline-rich protein 3
hg19_v2_chr2_+_102953608_102953727	0.0611418	LHX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr21_-_27423339_27423352	0.0574819	LHX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr3_+_57881966_57881977	0.0572055	LHX2	ENST00000495364.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr3_+_62936098_62936146	0.0566265	LHX2	ENST00000475886.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465684.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465262.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000468072.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698
hg19_v2_chr1_-_168464875_168464884	0.0564789	LHX2	ENST00000422253.1|RP5-968D22.3|ENSG00000237658.1|RP5-968D22.3
hg19_v2_chr4_-_100575781_100575805	0.0555762	LHX2	ENST00000511828.1|RP11-766F14.2|ENSG00000248713.1|Protein LOC285556
hg19_v2_chr3_+_147795932_147795948	0.0552053	LHX2	ENST00000490465.1|RP11-639B1.1|ENSG00000241131.1|RP11-639B1.1
hg19_v2_chr2_+_145780739_145780759	0.0535927	LHX2	ENST00000597173.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602108.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000420472.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr3_+_38017264_38017388	0.0515737	LHX2	ENST00000436654.1|CTDSPL|ENSG00000144677.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
hg19_v2_chr14_+_56584414_56584532	0.0511691	LHX2	ENST00000559044.1|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr6_+_123038689_123038707	0.0465942	LHX2	ENST00000354275.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta 	ENST00000368446.1|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr10_-_61900762_61900779	0.045892	LHX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr14_-_69864993_69865056	0.0456264	LHX2	ENST00000555373.1|ERH|ENSG00000100632.6|enhancer of rudimentary homolog (Drosophila)
hg19_v2_chr15_+_69854027_69854062	0.0453984	LHX2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr9_-_77643307_77643366	0.044611	LHX2	ENST00000376834.3|C9orf41|ENSG00000156017.8|chromosome 9 open reading frame 41 	ENST00000376830.3|C9orf41|ENSG00000156017.8|chromosome 9 open reading frame 41
hg19_v2_chr6_-_27841289_27841318	0.042655	LHX2	ENST00000355981.2|HIST1H4L|ENSG00000198558.2|histone cluster 1, H4l
hg19_v2_chr8_-_109260897_109260994	0.0413325	LHX2	ENST00000521297.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000519030.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000521440.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000518345.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000519627.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000220849.5|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E
hg19_v2_chr7_+_37960163_37960291	0.0408963	LHX2	ENST00000199448.4|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000559325.1|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000423717.1|EPDR1|ENSG00000086289.7|ependymin related 1
hg19_v2_chr9_+_116207007_116207012	0.0404741	LHX2	ENST00000374140.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr2_+_120436733_120436759	0.039431	LHX2	ENST00000401466.1|TMEM177|ENSG00000144120.8|transmembrane protein 177 	ENST00000424086.1|TMEM177|ENSG00000144120.8|transmembrane protein 177 	ENST00000272521.6|TMEM177|ENSG00000144120.8|transmembrane protein 177
hg19_v2_chr4_+_70796784_70796799	0.0387019	LHX2	ENST00000246891.4|CSN1S1|ENSG00000126545.9|casein alpha s1 	ENST00000444405.3|CSN1S1|ENSG00000126545.9|casein alpha s1
hg19_v2_chr16_-_23652570_23652663	0.0382854	LHX2	ENST00000261584.4|PALB2|ENSG00000083093.5|partner and localizer of BRCA2
hg19_v2_chr13_+_78315466_78315519	0.0382533	LHX2	ENST00000314070.5|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1 	ENST00000462234.1|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr12_+_27932803_27932953	0.037953	LHX2	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr21_+_35014706_35014767	0.0377811	LHX2	ENST00000399353.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000444491.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381318.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr2_-_112237835_112237844	0.0376686	LHX2	ENST00000442293.1|MIR4435-1HG|ENSG00000172965.10|MIR4435-1 host gene (non-protein coding) 	ENST00000439494.1|MIR4435-1HG|ENSG00000172965.10|MIR4435-1 host gene (non-protein coding)
hg19_v2_chr2_+_103035102_103035149	0.0374781	LHX2	ENST00000264260.2|IL18RAP|ENSG00000115607.5|interleukin 18 receptor accessory protein
hg19_v2_chr14_+_69865401_69865426	0.0374241	LHX2	ENST00000556605.1|SLC39A9|ENSG00000029364.7|solute carrier family 39, member 9 	ENST00000336643.5|SLC39A9|ENSG00000029364.7|solute carrier family 39, member 9 	ENST00000031146.4|SLC39A9|ENSG00000029364.7|solute carrier family 39, member 9
hg19_v2_chr12_+_128399965_128400017	0.0374	LHX2	ENST00000540882.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507 	ENST00000542089.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507
hg19_v2_chr11_+_64001962_64002033	0.0370322	LHX2	ENST00000309422.2|VEGFB|ENSG00000173511.5|vascular endothelial growth factor B
hg19_v2_chr2_+_234216454_234216469	0.0346862	LHX2	ENST00000447536.1|SAG|ENSG00000130561.12|S-antigen; retina and pineal gland (arrestin) 	ENST00000409110.1|SAG|ENSG00000130561.12|S-antigen; retina and pineal gland (arrestin)
hg19_v2_chr1_-_89591749_89591816	0.0342899	LHX2	ENST00000370466.3|GBP2|ENSG00000162645.8|guanylate binding protein 2, interferon-inducible
hg19_v2_chr1_+_160709029_160709047	0.0340775	LHX2	ENST00000444090.2|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000441662.2|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr13_-_19755975_19755996	0.0329666	LHX2	ENST00000400113.3|TUBA3C|ENSG00000198033.7|tubulin, alpha 3c
hg19_v2_chr12_+_9980069_9980087	0.0321559	LHX2	ENST00000354855.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000324214.4|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000279544.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1
hg19_v2_chr16_-_66864806_66864900	0.0318798	LHX2	ENST00000566336.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000394074.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000563185.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000359087.4|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000379463.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000565535.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000290810.3|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1
hg19_v2_chr4_-_109541539_109541585	0.0313992	LHX2	ENST00000509984.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000507248.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000506795.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head)
hg19_v2_chr3_-_180707306_180707451	0.0313003	LHX2	ENST00000479269.1|DNAJC19|ENSG00000205981.2|DnaJ (Hsp40) homolog, subfamily C, member 19
hg19_v2_chr8_+_76452097_76452126	0.0308951	LHX2	ENST00000396423.2|HNF4G|ENSG00000164749.7|hepatocyte nuclear factor 4, gamma
hg19_v2_chr17_-_39324424_39324474	0.0305485	LHX2	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chr16_+_31213206_31213206	0.0304892	LHX2	ENST00000561916.2|C16orf98|ENSG00000261359.2|chromosome 16 open reading frame 98
hg19_v2_chrX_-_20074895_20074954	0.0302663	LHX2	ENST00000543767.1|MAP7D2|ENSG00000184368.11|MAP7 domain containing 2
hg19_v2_chrX_+_30233668_30233698	0.0296564	LHX2	ENST00000378988.4|MAGEB2|ENSG00000099399.5|melanoma antigen family B, 2
hg19_v2_chr3_+_57882024_57882045	0.0284179	LHX2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr12_+_6309517_6309615	0.0282506	LHX2	ENST00000382519.4|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000009180.4|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr2_-_55496174_55496334	0.0275181	LHX2	ENST00000417363.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000412530.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000394600.3|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000366137.2|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000420637.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2
hg19_v2_chr17_-_39140549_39140579	0.0265135	LHX2	ENST00000377755.4|KRT40|ENSG00000204889.6|keratin 40
hg19_v2_chr5_-_156536126_156536141	0.0263894	LHX2	ENST00000522593.1|HAVCR2|ENSG00000135077.4|hepatitis A virus cellular receptor 2
hg19_v2_chr18_+_3466248_3466312	0.025358	LHX2	ENST00000581029.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000581442.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000579007.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4
hg19_v2_chr12_+_6554021_6554040	0.0253417	LHX2	ENST00000266557.3|CD27|ENSG00000139193.3|CD27 molecule
hg19_v2_chr16_+_24266874_24266917	0.0252369	LHX2	ENST00000005284.3|CACNG3|ENSG00000006116.3|calcium channel, voltage-dependent, gamma subunit 3
hg19_v2_chr14_-_78083112_78083140	0.0249806	LHX2	ENST00000216484.2|SPTLC2|ENSG00000100596.2|serine palmitoyltransferase, long chain base subunit 2
hg19_v2_chr4_-_105416039_105416065	0.0246751	LHX2	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr21_+_34619079_34619079	0.0244731	LHX2	ENST00000433395.2|AP000295.9|ENSG00000249624.4|AP000295.9
hg19_v2_chrY_-_20935572_20935621	0.0243822	LHX2	ENST00000382852.1|HSFY2|ENSG00000169953.11|heat shock transcription factor, Y linked 2 	ENST00000344884.4|HSFY2|ENSG00000169953.11|heat shock transcription factor, Y linked 2 	ENST00000304790.3|HSFY2|ENSG00000169953.11|heat shock transcription factor, Y linked 2
hg19_v2_chr4_+_15471489_15471637	0.0236058	LHX2	ENST00000424120.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000413206.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000438599.2|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000511544.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000512702.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000507954.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000515124.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000503292.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000503658.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr7_-_54826920_54826939	0.0229374	LHX2	ENST00000395535.3|SEC61G|ENSG00000132432.9|Sec61 gamma subunit 	ENST00000352861.4|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr16_+_31271274_31271315	0.022896	LHX2	ENST00000287497.8|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit) 	ENST00000544665.3|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit)
hg19_v2_chr2_-_128284020_128284091	0.0226022	LHX2	ENST00000295321.4|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae) 	ENST00000455721.2|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae)
hg19_v2_chr12_-_11548496_11548505	0.0217377	LHX2	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr7_-_5998714_5998714	0.0216701	LHX2	ENST00000539903.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr13_+_19756173_19756185	0.0215817	LHX2	ENST00000382988.2|RP11-408E5.4|ENSG00000121388.4|RP11-408E5.4
hg19_v2_chr2_+_234627424_234627444	0.0214569	LHX2	ENST00000373409.3|UGT1A4|ENSG00000244474.1|UDP glucuronosyltransferase 1 family, polypeptide A4
hg19_v2_chr2_+_87769459_87769476	0.0210615	LHX2	ENST00000414030.1|LINC00152|ENSG00000222041.6|long intergenic non-protein coding RNA 152 	ENST00000437561.1|LINC00152|ENSG00000222041.6|long intergenic non-protein coding RNA 152
hg19_v2_chr15_+_58430567_58430589	0.020499	LHX2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chrY_+_20708557_20708606	0.0201851	LHX2	ENST00000307393.2|HSFY1|ENSG00000172468.9|heat shock transcription factor, Y-linked 1 	ENST00000309834.4|HSFY1|ENSG00000172468.9|heat shock transcription factor, Y-linked 1 	ENST00000382856.2|HSFY1|ENSG00000172468.9|heat shock transcription factor, Y-linked 1
hg19_v2_chr15_+_58430368_58430401	0.0201003	LHX2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr17_-_57229155_57229198	0.0200375	LHX2	ENST00000584089.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr6_+_112408768_112408894	0.0199363	LHX2	ENST00000368656.2|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B 	ENST00000604268.1|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B
hg19_v2_chr12_-_74686314_74686425	0.0192135	LHX2	ENST00000551210.1|RP11-81H3.2|ENSG00000251138.2|RP11-81H3.2	ENST00000515416.2|RP11-81H3.2|ENSG00000251138.2|RP11-81H3.2	ENST00000549905.1|RP11-81H3.2|ENSG00000251138.2|RP11-81H3.2
hg19_v2_chr17_-_38859996_38860010	0.0188923	LHX2	ENST00000264651.2|KRT24|ENSG00000167916.4|keratin 24
hg19_v2_chr5_+_179921344_179921423	0.0183896	LHX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr20_+_30697298_30697330	0.0179111	LHX2	ENST00000398022.2|TM9SF4|ENSG00000101337.11|transmembrane 9 superfamily protein member 4
hg19_v2_chr12_-_113574028_113574051	0.0176972	LHX2	ENST00000546530.1|RASAL1|ENSG00000111344.7|RAS protein activator like 1 (GAP1 like) 	ENST00000261729.5|RASAL1|ENSG00000111344.7|RAS protein activator like 1 (GAP1 like)
hg19_v2_chr2_+_173686303_173686325	0.0176475	LHX2	ENST00000397087.3|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr9_+_21440440_21440440	0.0173927	LHX2	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr11_-_2323089_2323154	0.0173393	LHX2	ENST00000456145.2|C11orf21|ENSG00000110665.7|chromosome 11 open reading frame 21
hg19_v2_chr2_-_166930131_166930149	0.0172089	LHX2	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr4_-_89951028_89951062	0.016708	LHX2	ENST00000506913.1|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr11_-_40315640_40315684	0.0154778	LHX2	ENST00000278198.2|LRRC4C|ENSG00000148948.3|leucine rich repeat containing 4C
hg19_v2_chr11_+_94706973_94706987	0.0144068	LHX2	ENST00000536741.1|KDM4D|ENSG00000186280.5|lysine (K)-specific demethylase 4D
hg19_v2_chr10_-_69597828_69597854	0.0139312	LHX2	ENST00000339758.7|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr12_+_12510352_12510360	0.0133483	LHX2	ENST00000298571.6|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr19_+_20188830_20188844	0.0126209	LHX2	ENST00000418063.2|ZNF90|ENSG00000213988.5|zinc finger protein 90
hg19_v2_chr7_-_54826869_54826880	0.0117059	LHX2	ENST00000450622.1|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr5_-_133702761_133702793	0.0115635	LHX2	ENST00000521118.1|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3 	ENST00000265334.4|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3 	ENST00000435211.1|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3
hg19_v2_chr6_+_3259148_3259294	0.0107873	LHX2	ENST00000419065.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000473000.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000451246.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000454610.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4
hg19_v2_chr3_-_160823040_160823151	0.0100936	LHX2	ENST00000484127.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000492353.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000473142.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000468268.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000460353.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000320474.4|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000392781.2|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
hg19_v2_chr16_+_23652773_23652850	0.00954575	LHX2	ENST00000563998.1|DCTN5|ENSG00000166847.5|dynactin 5 (p25) 	ENST00000568589.1|DCTN5|ENSG00000166847.5|dynactin 5 (p25) 	ENST00000568272.1|DCTN5|ENSG00000166847.5|dynactin 5 (p25)
hg19_v2_chr1_+_182419261_182419285	0.00896221	LHX2	ENST00000294854.8|RGSL1|ENSG00000121446.13|regulator of G-protein signaling like 1 	ENST00000542961.1|RGSL1|ENSG00000121446.13|regulator of G-protein signaling like 1
hg19_v2_chr11_-_55703876_55703876	0.0089457	LHX2	ENST00000301532.3|OR5I1|ENSG00000167825.3|olfactory receptor, family 5, subfamily I, member 1
hg19_v2_chr3_-_160823158_160823177	0.0086714	LHX2	ENST00000392779.2|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000392780.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000494173.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
hg19_v2_chr12_+_48722763_48722763	0.00803912	LHX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr1_-_28527152_28527152	0.0078088	LHX2	ENST00000321830.5|AL353354.1|ENSG00000215902.1|Uncharacterized protein
hg19_v2_chr5_-_175388327_175388416	0.00762702	LHX2	ENST00000432305.2|THOC3|ENSG00000051596.5|THO complex 3 	ENST00000505969.1|THOC3|ENSG00000051596.5|THO complex 3
hg19_v2_chr2_-_208989225_208989255	0.00759261	LHX2	ENST00000264376.4|CRYGD|ENSG00000118231.4|crystallin, gamma D
hg19_v2_chr9_-_21202204_21202204	0.00711887	LHX2	ENST00000239347.3|IFNA7|ENSG00000214042.1|interferon, alpha 7
hg19_v2_chr1_-_198509804_198509865	0.00644396	LHX2	ENST00000489986.1|ATP6V1G3|ENSG00000151418.7|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 	ENST00000367382.1|ATP6V1G3|ENSG00000151418.7|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3
hg19_v2_chr8_+_55528627_55528631	0.00620312	LHX2	ENST00000220676.1|RP1|ENSG00000104237.6|retinitis pigmentosa 1 (autosomal dominant)
hg19_v2_chr1_+_219347203_219347233	0.00615308	LHX2	ENST00000366927.3|LYPLAL1|ENSG00000143353.7|lysophospholipase-like 1
hg19_v2_chr15_-_72563585_72563628	0.00571597	LHX2	ENST00000287196.9|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6 	ENST00000260376.7|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6
hg19_v2_chr8_-_82395461_82395498	0.00545207	LHX2	ENST00000256104.4|FABP4|ENSG00000170323.4|fatty acid binding protein 4, adipocyte
hg19_v2_chr14_+_22554680_22554691	0.00529248	LHX2	ENST00000390451.2|TRAV23DV6|ENSG00000211803.2|T cell receptor alpha variable 23/delta variable 6
hg19_v2_chr10_+_96443204_96443251	0.00488018	LHX2	ENST00000339022.5|CYP2C18|ENSG00000108242.8|cytochrome P450, family 2, subfamily C, polypeptide 18
hg19_v2_chr14_+_27342334_27342369	0.0033975	LHX2	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr12_-_118797475_118797527	0.00293225	LHX2	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr3_+_35722424_35722438	0.00269093	LHX2	ENST00000396481.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr20_-_31989307_31989367	0.00147577	LHX2	ENST00000473997.1|CDK5RAP1|ENSG00000101391.16|CDK5 regulatory subunit associated protein 1 	ENST00000544843.1|CDK5RAP1|ENSG00000101391.16|CDK5 regulatory subunit associated protein 1 	ENST00000346416.2|CDK5RAP1|ENSG00000101391.16|CDK5 regulatory subunit associated protein 1 	ENST00000357886.4|CDK5RAP1|ENSG00000101391.16|CDK5 regulatory subunit associated protein 1 	ENST00000339269.5|CDK5RAP1|ENSG00000101391.16|CDK5 regulatory subunit associated protein 1
hg19_v2_chr7_-_151217166_151217206	0.00081697	LHX2	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr12_+_16064106_16064238	0.000373716	LHX2	ENST00000428559.2|DERA|ENSG00000023697.8|deoxyribose-phosphate aldolase (putative)
