hg19_v2_chr4_-_138453606_138453673	0.728639	MSX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr6_-_167040731_167040745	0.609417	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr17_-_43045439_43045439	0.517073	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr1_-_232651312_232651312	0.515226	MSX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr16_+_53133070_53133081	0.406752	MSX2	ENST00000565832.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr4_-_138453559_138453572	0.400438	MSX2	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr10_-_28571015_28571067	0.285312	MSX2	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr3_-_114866084_114866118	0.26987	MSX2	ENST00000357258.3|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr7_+_134331550_134331593	0.214477	MSX2	ENST00000344924.3|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000418040.1|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000393132.2|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase
hg19_v2_chr7_+_99717230_99717321	0.198784	MSX2	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr8_-_12612962_12613049	0.18213	MSX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr9_+_80912059_80912081	0.174921	MSX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr22_+_46476192_46476222	0.170856	MSX2	ENST00000443490.1|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr1_+_151735431_151735446	0.167588	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr7_+_100209979_100210053	0.166926	MSX2	ENST00000493970.1|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000379527.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr7_+_100209725_100209824	0.166268	MSX2	ENST00000223054.4|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr6_+_25652432_25652485	0.161184	MSX2	ENST00000377961.2|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr10_+_85954377_85954438	0.158685	MSX2	ENST00000332904.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1 	ENST00000372117.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1
hg19_v2_chr1_-_23694794_23694879	0.155669	MSX2	ENST00000374608.3|ZNF436|ENSG00000125945.10|zinc finger protein 436
hg19_v2_chrX_-_48931648_48931730	0.150182	MSX2	ENST00000376386.3|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2 	ENST00000376390.4|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2
hg19_v2_chr11_+_33061543_33061585	0.14962	MSX2	ENST00000432887.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000528898.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000531632.2|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1
hg19_v2_chr7_+_100210133_100210214	0.14817	MSX2	ENST00000393950.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000424091.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr15_-_37393406_37393528	0.145888	MSX2	ENST00000338564.5|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000558313.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000340545.5|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr2_-_73460334_73460405	0.143759	MSX2	ENST00000258083.2|PRADC1|ENSG00000135617.3|protease-associated domain containing 1
hg19_v2_chr11_-_124981475_124981659	0.14057	MSX2	ENST00000532156.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000532407.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000279968.4|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527766.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529583.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000524373.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527271.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000526175.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529609.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000533273.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000531909.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529530.1|TMEM218|ENSG00000150433.5|transmembrane protein 218
hg19_v2_chr8_+_38831683_38831702	0.138631	MSX2	ENST00000302495.4|HTRA4|ENSG00000169495.4|HtrA serine peptidase 4
hg19_v2_chr1_+_152943122_152943142	0.12499	MSX2	ENST00000328051.2|SPRR4|ENSG00000184148.3|small proline-rich protein 4
hg19_v2_chr1_-_151762943_151763012	0.120377	MSX2	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr1_+_244515930_244515950	0.119278	MSX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr5_+_162864575_162864620	0.117063	MSX2	ENST00000512163.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000393929.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000340828.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511683.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510097.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511490.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510664.1|CCNG1|ENSG00000113328.14|cyclin G1
hg19_v2_chr14_-_51027838_51027851	0.109944	MSX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr11_+_67250490_67250527	0.109158	MSX2	ENST00000528641.2|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein 	ENST00000279146.3|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein
hg19_v2_chr12_+_54718904_54718936	0.107431	MSX2	ENST00000262061.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549043.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552218.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000553231.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552362.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000455864.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000416254.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549116.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000551779.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr22_+_17956618_17956637	0.10568	MSX2	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr1_-_36916066_36916092	0.104145	MSX2	ENST00000315643.9|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr17_+_74261413_74261452	0.103406	MSX2	ENST00000587913.1|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr1_-_151965048_151965062	0.0942733	MSX2	ENST00000368809.1|S100A10|ENSG00000197747.4|S100 calcium binding protein A10
hg19_v2_chr16_+_58783542_58783581	0.094203	MSX2	ENST00000500117.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2	ENST00000565722.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2
hg19_v2_chr22_-_30960876_30960901	0.0937203	MSX2	ENST00000401975.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000428682.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000423299.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr1_-_36916011_36916057	0.0932272	MSX2	ENST00000356637.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000354267.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000235532.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr19_-_47137942_47137942	0.0921638	MSX2	ENST00000300873.4|GNG8|ENSG00000167414.4|guanine nucleotide binding protein (G protein), gamma 8
hg19_v2_chr7_-_2883928_2883993	0.0881065	MSX2	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr1_-_36915880_36916004	0.0879196	MSX2	ENST00000445843.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr20_+_56964169_56964182	0.0824118	MSX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr7_-_99717463_99717483	0.0822183	MSX2	ENST00000437822.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr3_-_141747950_141748004	0.0807915	MSX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr3_-_164796269_164796290	0.0791705	MSX2	ENST00000264382.3|SI|ENSG00000090402.3|sucrase-isomaltase (alpha-glucosidase)
hg19_v2_chrX_-_15332665_15332693	0.0735655	MSX2	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chr7_-_99716952_99717021	0.0735098	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_-_151431647_151431669	0.0725254	MSX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr2_-_55646957_55647027	0.0715528	MSX2	ENST00000263630.8|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr14_+_65381079_65381212	0.0703115	MSX2	ENST00000549115.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000607599.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000548752.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000359118.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000552002.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551947.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551093.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000542227.1|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000447296.2|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000549987.1|CHURC1-FNTB|ENSG00000125954.8|CHURC1-FNTB readthrough
hg19_v2_chr2_-_55647057_55647082	0.0690861	MSX2	ENST00000436346.1|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr1_-_68698197_68698214	0.0684736	MSX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr1_+_202317815_202317854	0.0668101	MSX2	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr12_-_95397442_95397546	0.0596488	MSX2	ENST00000547157.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000547986.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000327772.2|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
hg19_v2_chr10_-_99447024_99447080	0.0591104	MSX2	ENST00000370626.3|AVPI1|ENSG00000119986.6|arginine vasopressin-induced 1
hg19_v2_chr4_+_71587669_71587752	0.0582163	MSX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr16_+_69345243_69345312	0.0581794	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr18_-_48346298_48346391	0.058125	MSX2	ENST00000398439.3|MRO|ENSG00000134042.8|maestro
hg19_v2_chrX_+_77154935_77155012	0.056875	MSX2	ENST00000481445.1|COX7B|ENSG00000131174.4|cytochrome c oxidase subunit VIIb
hg19_v2_chr5_+_31532373_31532479	0.0563456	MSX2	ENST00000325366.9|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000355907.3|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000507818.2|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22
hg19_v2_chr9_-_4666421_4666492	0.0545419	MSX2	ENST00000381895.5|SPATA6L|ENSG00000106686.12|spermatogenesis associated 6-like
hg19_v2_chr6_+_34204642_34204664	0.0536954	MSX2	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr2_+_150187020_150187120	0.0528898	MSX2	ENST00000334166.4|LYPD6|ENSG00000187123.10|LY6/PLAUR domain containing 6
hg19_v2_chr8_+_9413410_9413451	0.0524638	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr4_-_109684120_109684217	0.0513041	MSX2	ENST00000512646.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000411864.2|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000296486.3|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000510706.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase
hg19_v2_chr5_+_95997918_95998007	0.0476354	MSX2	ENST00000395812.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000395813.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000359176.4|CAST|ENSG00000153113.19|calpastatin 	ENST00000325674.7|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr11_-_13517565_13517728	0.0475781	MSX2	ENST00000282091.1|PTH|ENSG00000152266.2|parathyroid hormone 	ENST00000529816.1|PTH|ENSG00000152266.2|parathyroid hormone
hg19_v2_chr2_-_27603582_27603657	0.0473922	MSX2	ENST00000323703.6|ZNF513|ENSG00000163795.9|zinc finger protein 513 	ENST00000436006.1|ZNF513|ENSG00000163795.9|zinc finger protein 513
hg19_v2_chr10_-_99205607_99205779	0.0473643	MSX2	ENST00000477692.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000485122.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370886.5|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370885.4|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370902.3|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370884.5|EXOSC1|ENSG00000171311.8|exosome component 1
hg19_v2_chr14_-_23504337_23504369	0.0434666	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr11_-_71823796_71823826	0.0414132	MSX2	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr1_+_175036966_175036994	0.0412698	MSX2	ENST00000239462.4|TNN|ENSG00000120332.11|tenascin N
hg19_v2_chr11_+_101918153_101918198	0.039922	MSX2	ENST00000434758.2|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000526781.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000534360.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70
hg19_v2_chr1_-_151431909_151431987	0.039872	MSX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr15_+_41245160_41245347	0.0390053	MSX2	ENST00000444189.2|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli) 	ENST00000446533.3|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli)
hg19_v2_chr19_-_10121144_10121155	0.0380181	MSX2	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr14_-_23504432_23504448	0.037626	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr2_+_172864490_172864490	0.0358678	MSX2	ENST00000315796.4|METAP1D|ENSG00000172878.9|methionyl aminopeptidase type 1D (mitochondrial)
hg19_v2_chr18_+_5748793_5748820	0.0358141	MSX2	ENST00000566533.1|RP11-945C19.1|ENSG00000261738.2|RP11-945C19.1	ENST00000562452.2|RP11-945C19.1|ENSG00000261738.2|RP11-945C19.1
hg19_v2_chr7_+_48211048_48211063	0.0353465	MSX2	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr13_-_103389159_103389159	0.0339611	MSX2	ENST00000322527.2|CCDC168|ENSG00000175820.2|coiled-coil domain containing 168
hg19_v2_chr11_-_121986923_121986923	0.0337904	MSX2	ENST00000560104.1|BLID|ENSG00000259571.1|BH3-like motif containing, cell death inducer
hg19_v2_chr19_+_17378159_17378275	0.0328779	MSX2	ENST00000598188.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000359435.4|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599474.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599057.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601043.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000447614.2|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr18_+_39535152_39535232	0.0318786	MSX2	ENST00000262039.4|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000398870.3|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000586545.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr11_-_71823715_71823792	0.0308753	MSX2	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr6_+_160183492_160183523	0.0292761	MSX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr1_-_68698222_68698266	0.0292327	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr19_+_17378278_17378311	0.0291776	MSX2	ENST00000596335.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601436.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000595632.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr3_+_186353756_186353761	0.0291032	MSX2	ENST00000431018.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000450521.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000539949.1|FETUB|ENSG00000090512.7|fetuin B
hg19_v2_chr7_-_56174161_56174269	0.0288225	MSX2	ENST00000395422.3|CHCHD2|ENSG00000106153.12|coiled-coil-helix-coiled-coil-helix domain containing 2
hg19_v2_chr10_-_72142345_72142395	0.0283939	MSX2	ENST00000373224.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000446961.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000358141.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000357631.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20
hg19_v2_chr21_-_22175341_22175434	0.0281624	MSX2	ENST00000416768.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000452561.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000419299.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000437238.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320
hg19_v2_chr3_-_48672859_48672926	0.0277955	MSX2	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chr5_+_140797296_140797427	0.0259782	MSX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr3_+_140396881_140396887	0.0256062	MSX2	ENST00000286349.3|TRIM42|ENSG00000155890.3|tripartite motif containing 42
hg19_v2_chr1_-_228613026_228613065	0.0253569	MSX2	ENST00000366696.1|HIST3H3|ENSG00000168148.3|histone cluster 3, H3
hg19_v2_chr17_-_9929581_9929626	0.0245395	MSX2	ENST00000437099.2|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000396115.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr5_+_95998070_95998179	0.0239568	MSX2	ENST00000421689.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000510756.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000512620.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr5_+_140557371_140557371	0.02319	MSX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr11_-_71823266_71823325	0.0224844	MSX2	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr19_+_41869894_41869961	0.0221184	MSX2	ENST00000413014.2|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr11_-_40315640_40315684	0.0220583	MSX2	ENST00000278198.2|LRRC4C|ENSG00000148948.3|leucine rich repeat containing 4C
hg19_v2_chr15_+_80351910_80351955	0.0219009	MSX2	ENST00000261749.6|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000561060.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr17_+_42264556_42264649	0.0193501	MSX2	ENST00000319511.6|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000589785.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000592825.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000589184.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2
hg19_v2_chr10_-_105110831_105110885	0.0183484	MSX2	ENST00000337211.4|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chrX_+_70752945_70752973	0.0181448	MSX2	ENST00000373701.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr7_+_100183927_100183957	0.0169401	MSX2	ENST00000241071.6|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000360609.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr19_-_46088068_46088100	0.0132258	MSX2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr15_-_98417780_98417780	0.0120729	MSX2	ENST00000503874.3|LINC00923|ENSG00000251209.3|long intergenic non-protein coding RNA 923
hg19_v2_chr17_-_10372875_10372876	0.0111608	MSX2	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr8_+_92261516_92261555	0.00892238	MSX2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chrX_+_70752917_70752933	0.00853655	MSX2	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr10_-_56561022_56561051	0.008401	MSX2	ENST00000373965.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000414778.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395438.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000409834.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395445.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395446.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395442.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395440.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395432.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000361849.3|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395433.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000320301.6|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395430.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000437009.1|PCDH15|ENSG00000150275.13|protocadherin-related 15
hg19_v2_chr2_+_113829895_113829895	0.00774944	MSX2	ENST00000393197.2|IL1F10|ENSG00000136697.8|interleukin 1 family, member 10 (theta)
hg19_v2_chr6_-_116833500_116833511	0.00659987	MSX2	ENST00000356128.4|TRAPPC3L|ENSG00000173626.5|trafficking protein particle complex 3-like
hg19_v2_chr10_-_105110890_105110914	0.00444403	MSX2	ENST00000369847.3|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr5_-_148758839_148758861	0.00352567	MSX2	ENST00000261796.3|IL17B|ENSG00000127743.5|interleukin 17B
hg19_v2_chr17_+_74261277_74261292	0.00238296	MSX2	ENST00000327490.6|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr2_-_98280383_98280570	0.00194358	MSX2	ENST00000289228.5|ACTR1B|ENSG00000115073.6|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
hg19_v2_chr19_+_42817527_42817546	0.00169286	MSX2	ENST00000598766.1|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr11_+_17298255_17298296	0.000585597	MSX2	ENST00000531172.1|NUCB2|ENSG00000070081.11|nucleobindin 2 	ENST00000533738.2|NUCB2|ENSG00000070081.11|nucleobindin 2 	ENST00000323688.6|NUCB2|ENSG00000070081.11|nucleobindin 2
