hg19_v2_chr4_+_123747979_123747994	0.411649	PAX1_PAX9	ENST00000608478.1|FGF2|ENSG00000138685.8|fibroblast growth factor 2 (basic)
hg19_v2_chr4_+_123747834_123747863	0.353123	PAX1_PAX9	ENST00000264498.3|FGF2|ENSG00000138685.8|fibroblast growth factor 2 (basic)
hg19_v2_chr5_-_133747589_133747603	0.217031	PAX1_PAX9	ENST00000458198.2|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr8_+_84824920_84824948	0.209763	PAX1_PAX9	ENST00000523678.1|RP11-120I21.2|ENSG00000254202.1|RP11-120I21.2
hg19_v2_chr5_-_133747551_133747585	0.167493	PAX1_PAX9	ENST00000395009.3|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr2_-_207629997_207630030	0.145649	PAX1_PAX9	ENST00000454776.2|MDH1B|ENSG00000138400.8|malate dehydrogenase 1B, NAD (soluble)
hg19_v2_chrX_-_153707545_153707596	0.144624	PAX1_PAX9	ENST00000357360.4|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr7_-_19157248_19157295	0.141597	PAX1_PAX9	ENST00000242261.5|TWIST1|ENSG00000122691.8|twist family bHLH transcription factor 1
hg19_v2_chrX_-_153707246_153707306	0.141467	PAX1_PAX9	ENST00000407062.1|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr1_-_162838551_162838628	0.139548	PAX1_PAX9	ENST00000367910.1|C1orf110|ENSG00000185860.9|chromosome 1 open reading frame 110 	ENST00000367912.2|C1orf110|ENSG00000185860.9|chromosome 1 open reading frame 110 	ENST00000367911.2|C1orf110|ENSG00000185860.9|chromosome 1 open reading frame 110
hg19_v2_chr19_-_40791211_40791269	0.1249	PAX1_PAX9	ENST00000579047.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr8_-_121824374_121824391	0.10509	PAX1_PAX9	ENST00000517992.1|SNTB1|ENSG00000172164.9|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
hg19_v2_chr2_+_119699864_119699905	0.0972438	PAX1_PAX9	ENST00000541757.1|MARCO|ENSG00000019169.9|macrophage receptor with collagenous structure 	ENST00000412481.1|MARCO|ENSG00000019169.9|macrophage receptor with collagenous structure
hg19_v2_chr8_-_125384927_125384952	0.0965053	PAX1_PAX9	ENST00000297632.6|TMEM65|ENSG00000164983.6|transmembrane protein 65
hg19_v2_chr2_-_207630033_207630061	0.0935877	PAX1_PAX9	ENST00000449792.1|MDH1B|ENSG00000138400.8|malate dehydrogenase 1B, NAD (soluble)
hg19_v2_chr5_+_133842243_133842269	0.0849645	PAX1_PAX9	ENST00000515627.2|AC005355.2|ENSG00000251169.2|AC005355.2
hg19_v2_chr19_-_18995029_18995050	0.0797113	PAX1_PAX9	ENST00000596048.1|CERS1|ENSG00000223802.3|ceramide synthase 1
hg19_v2_chr7_-_144533074_144533153	0.0778105	PAX1_PAX9	ENST00000360057.3|TPK1|ENSG00000196511.9|thiamin pyrophosphokinase 1 	ENST00000378099.3|TPK1|ENSG00000196511.9|thiamin pyrophosphokinase 1
hg19_v2_chr2_-_175712270_175712316	0.0774952	PAX1_PAX9	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr9_+_33795533_33795562	0.0718702	PAX1_PAX9	ENST00000379405.3|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr9_+_33750667_33750819	0.0688603	PAX1_PAX9	ENST00000457896.1|PRSS3|ENSG00000010438.12|protease, serine, 3 	ENST00000342836.4|PRSS3|ENSG00000010438.12|protease, serine, 3 	ENST00000429677.3|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr1_+_26759295_26759382	0.0688142	PAX1_PAX9	ENST00000430232.1|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase
hg19_v2_chr10_-_99393208_99393237	0.066737	PAX1_PAX9	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr9_+_33750515_33750648	0.0657313	PAX1_PAX9	ENST00000361005.5|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr13_+_98086445_98086493	0.0648127	PAX1_PAX9	ENST00000245304.4|RAP2A|ENSG00000125249.6|RAP2A, member of RAS oncogene family
hg19_v2_chr5_+_72251857_72251908	0.0564212	PAX1_PAX9	ENST00000507345.2|FCHO2|ENSG00000157107.9|FCH domain only 2 	ENST00000512348.1|FCHO2|ENSG00000157107.9|FCH domain only 2 	ENST00000287761.6|FCHO2|ENSG00000157107.9|FCH domain only 2
hg19_v2_chr20_-_17641097_17641152	0.0561343	PAX1_PAX9	ENST00000246043.4|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr17_+_39969183_39969265	0.0517694	PAX1_PAX9	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr12_-_101801505_101801598	0.0484236	PAX1_PAX9	ENST00000539055.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000551688.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000551671.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000261636.8|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1
hg19_v2_chr17_-_7137582_7137637	0.0466132	PAX1_PAX9	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr1_+_26758790_26758847	0.0457404	PAX1_PAX9	ENST00000427245.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000525682.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000236342.7|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000526219.1|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000374185.3|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000360009.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase
hg19_v2_chr17_-_3461092_3461126	0.0446207	PAX1_PAX9	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr6_-_137366163_137366298	0.0443738	PAX1_PAX9	ENST00000367748.1|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr19_+_14184370_14184428	0.0437187	PAX1_PAX9	ENST00000590772.1|hsa-mir-1199|ENSG00000141854.3|hsa-mir-1199
hg19_v2_chr10_-_99393242_99393344	0.0435955	PAX1_PAX9	ENST00000370635.3|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000478953.1|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000335628.3|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr7_+_142457315_142457330	0.0424395	PAX1_PAX9	ENST00000486171.1|PRSS1|ENSG00000204983.8|protease, serine, 1 (trypsin 1) 	ENST00000311737.7|PRSS1|ENSG00000204983.8|protease, serine, 1 (trypsin 1)
hg19_v2_chr14_-_69261310_69261453	0.0410539	PAX1_PAX9	ENST00000336440.3|ZFP36L1|ENSG00000185650.8|ZFP36 ring finger protein-like 1
hg19_v2_chr9_-_131418944_131419066	0.0392693	PAX1_PAX9	ENST00000419989.1|WDR34|ENSG00000119333.7|WD repeat domain 34 	ENST00000451652.1|WDR34|ENSG00000119333.7|WD repeat domain 34 	ENST00000372715.2|WDR34|ENSG00000119333.7|WD repeat domain 34
hg19_v2_chr9_+_96793076_96793128	0.036454	PAX1_PAX9	ENST00000375360.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr6_+_3118926_3118976	0.0359921	PAX1_PAX9	ENST00000380379.5|BPHL|ENSG00000137274.8|biphenyl hydrolase-like (serine hydrolase)
hg19_v2_chr18_-_33077556_33077613	0.0291102	PAX1_PAX9	ENST00000589273.1|INO80C|ENSG00000153391.11|INO80 complex subunit C 	ENST00000586489.1|INO80C|ENSG00000153391.11|INO80 complex subunit C
hg19_v2_chr16_+_67197288_67197362	0.0279437	PAX1_PAX9	ENST00000264009.8|HSF4|ENSG00000102878.11|heat shock transcription factor 4 	ENST00000421453.1|HSF4|ENSG00000102878.11|heat shock transcription factor 4
hg19_v2_chr15_+_63569731_63569783	0.0269273	PAX1_PAX9	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr1_-_213031418_213031449	0.0265765	PAX1_PAX9	ENST00000356684.3|FLVCR1-AS1|ENSG00000198468.3|FLVCR1 antisense RNA 1 (head to head) 	ENST00000426161.1|FLVCR1-AS1|ENSG00000198468.3|FLVCR1 antisense RNA 1 (head to head) 	ENST00000424044.1|FLVCR1-AS1|ENSG00000198468.3|FLVCR1 antisense RNA 1 (head to head)
hg19_v2_chr4_+_619386_619407	0.0255069	PAX1_PAX9	ENST00000496514.1|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr8_-_101965559_101965570	0.0221685	PAX1_PAX9	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr10_-_43904608_43904640	0.0206775	PAX1_PAX9	ENST00000337970.3|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr3_+_15247686_15247784	0.0204021	PAX1_PAX9	ENST00000253693.2|CAPN7|ENSG00000131375.5|calpain 7
hg19_v2_chr13_+_21141208_21141265	0.0200421	PAX1_PAX9	ENST00000351808.5|IFT88|ENSG00000032742.13|intraflagellar transport 88 homolog (Chlamydomonas)
hg19_v2_chr18_-_47017956_47018210	0.0195501	PAX1_PAX9	ENST00000584895.1|RPL17-C18orf32|ENSG00000215472.5|RPL17-C18orf32 readthrough 	ENST00000332968.6|RPL17-C18orf32|ENSG00000215472.5|RPL17-C18orf32 readthrough 	ENST00000580210.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000579408.1|RPL17|ENSG00000265681.2|ribosomal protein L17
hg19_v2_chr6_+_159291090_159291223	0.0181287	PAX1_PAX9	ENST00000367073.4|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99 	ENST00000608817.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr13_+_21141270_21141349	0.0180556	PAX1_PAX9	ENST00000319980.6|IFT88|ENSG00000032742.13|intraflagellar transport 88 homolog (Chlamydomonas) 	ENST00000537103.1|IFT88|ENSG00000032742.13|intraflagellar transport 88 homolog (Chlamydomonas) 	ENST00000389373.3|IFT88|ENSG00000032742.13|intraflagellar transport 88 homolog (Chlamydomonas)
hg19_v2_chr18_+_39766626_39766668	0.0180461	PAX1_PAX9	ENST00000593234.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585627.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591199.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000586990.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593051.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593316.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591381.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585639.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000589068.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907
hg19_v2_chr6_+_159290917_159290971	0.0160038	PAX1_PAX9	ENST00000367072.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr4_-_171011084_171011147	0.0158472	PAX1_PAX9	ENST00000337664.4|AADAT|ENSG00000109576.9|aminoadipate aminotransferase
hg19_v2_chr10_+_82297658_82297658	0.0151143	PAX1_PAX9	ENST00000339284.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr11_+_61522844_61522875	0.0119997	PAX1_PAX9	ENST00000265460.5|MYRF|ENSG00000124920.9|myelin regulatory factor
hg19_v2_chr19_-_52148798_52148798	0.0115983	PAX1_PAX9	ENST00000534261.2|SIGLEC5|ENSG00000105501.7|sialic acid binding Ig-like lectin 5
hg19_v2_chr8_+_39792474_39792474	0.011509	PAX1_PAX9	ENST00000502986.2|IDO2|ENSG00000188676.9|indoleamine 2,3-dioxygenase 2
hg19_v2_chr4_-_171011323_171011538	0.0112243	PAX1_PAX9	ENST00000509167.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase 	ENST00000353187.2|AADAT|ENSG00000109576.9|aminoadipate aminotransferase 	ENST00000507375.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase 	ENST00000515480.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase
hg19_v2_chr2_-_162931052_162931063	0.0106474	PAX1_PAX9	ENST00000360534.3|DPP4|ENSG00000197635.5|dipeptidyl-peptidase 4
hg19_v2_chr6_-_137494775_137494785	0.0101016	PAX1_PAX9	ENST00000349184.4|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2 	ENST00000296980.2|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2 	ENST00000339602.3|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2
hg19_v2_chr9_-_21142144_21142144	0.0100047	PAX1_PAX9	ENST00000380229.2|IFNW1|ENSG00000177047.5|interferon, omega 1
hg19_v2_chr1_+_160121356_160121363	0.00857518	PAX1_PAX9	ENST00000368081.4|ATP1A4|ENSG00000132681.12|ATPase, Na+/K+ transporting, alpha 4 polypeptide
hg19_v2_chrX_+_148622513_148622612	0.00732568	PAX1_PAX9	ENST00000393985.3|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000423421.1|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000423540.2|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000434353.2|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A 	ENST00000514208.1|CXorf40A|ENSG00000197620.6|chromosome X open reading frame 40A
hg19_v2_chr11_+_6947720_6947812	0.00682348	PAX1_PAX9	ENST00000414517.2|ZNF215|ENSG00000149054.10|zinc finger protein 215
hg19_v2_chr14_+_39703112_39703135	0.00635182	PAX1_PAX9	ENST00000555143.1|MIA2|ENSG00000150526.7|melanoma inhibitory activity 2 	ENST00000280082.3|MIA2|ENSG00000150526.7|melanoma inhibitory activity 2
hg19_v2_chr19_-_40791302_40791443	0.00610488	PAX1_PAX9	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr3_-_25824925_25825042	0.0047959	PAX1_PAX9	ENST00000396649.3|NGLY1|ENSG00000151092.12|N-glycanase 1 	ENST00000428257.1|NGLY1|ENSG00000151092.12|N-glycanase 1 	ENST00000280700.5|NGLY1|ENSG00000151092.12|N-glycanase 1
hg19_v2_chr3_-_25824872_25824913	0.00363753	PAX1_PAX9	ENST00000308710.5|NGLY1|ENSG00000151092.12|N-glycanase 1
hg19_v2_chr15_+_63569785_63569824	0.00328703	PAX1_PAX9	ENST00000380343.4|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit 	ENST00000560353.1|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr18_-_47018769_47018858	0.000263108	PAX1_PAX9	ENST00000583637.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000578528.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000578532.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000580387.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000579248.1|RPL17|ENSG00000265681.2|ribosomal protein L17 	ENST00000581373.1|RPL17|ENSG00000265681.2|ribosomal protein L17
