hg19_v2_chr4_-_138453606_138453673	1.14894	SOX3_SOX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr4_-_138453559_138453572	0.982395	SOX3_SOX2	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr6_+_72596604_72596727	0.803772	SOX3_SOX2	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr8_-_124553437_124553453	0.733121	SOX3_SOX2	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr4_-_186877502_186877563	0.649596	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr22_+_27053422_27053488	0.622108	SOX3_SOX2	ENST00000413665.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000421151.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000456129.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000430080.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr8_-_22550815_22550844	0.578293	SOX3_SOX2	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr16_-_4987065_4987156	0.57216	SOX3_SOX2	ENST00000590782.2|PPL|ENSG00000118898.11|periplakin 	ENST00000345988.2|PPL|ENSG00000118898.11|periplakin
hg19_v2_chr4_-_186732048_186732225	0.559479	SOX3_SOX2	ENST00000448662.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439049.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000420158.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000431808.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319471.9|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr9_-_131940526_131940546	0.527933	SOX3_SOX2	ENST00000372491.2|IER5L|ENSG00000188483.6|immediate early response 5-like
hg19_v2_chr2_+_210444142_210444194	0.511452	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr11_-_94965667_94965705	0.508112	SOX3_SOX2	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr3_-_114343768_114343822	0.480329	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr9_+_101705893_101705921	0.476768	SOX3_SOX2	ENST00000375001.3|COL15A1|ENSG00000204291.6|collagen, type XV, alpha 1
hg19_v2_chr8_+_104384616_104384661	0.474693	SOX3_SOX2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr6_+_30848557_30848645	0.46349	SOX3_SOX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr1_+_215256467_215256622	0.439335	SOX3_SOX2	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr3_-_18466026_18466065	0.435926	SOX3_SOX2	ENST00000417717.2|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr22_+_27053190_27053336	0.422497	SOX3_SOX2	ENST00000439738.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000422403.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000436238.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000425476.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000455640.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000451141.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000452429.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000423278.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr9_-_123476612_123476698	0.415746	SOX3_SOX2	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr9_-_123476719_123476810	0.413889	SOX3_SOX2	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr4_+_62067860_62067900	0.413659	SOX3_SOX2	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr20_-_39317868_39317884	0.395899	SOX3_SOX2	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr19_+_45409011_45409069	0.39414	SOX3_SOX2	ENST00000252486.4|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000446996.1|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000434152.1|APOE|ENSG00000130203.5|apolipoprotein E
hg19_v2_chr15_-_93632421_93632446	0.385781	SOX3_SOX2	ENST00000329082.7|RGMA|ENSG00000182175.9|repulsive guidance molecule family member a
hg19_v2_chrX_+_55744228_55744318	0.384625	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr1_+_145727681_145727725	0.383557	SOX3_SOX2	ENST00000417171.1|PDZK1|ENSG00000174827.9|PDZ domain containing 1 	ENST00000451928.2|PDZK1|ENSG00000174827.9|PDZ domain containing 1
hg19_v2_chr7_+_16793160_16793160	0.382396	SOX3_SOX2	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr4_+_95679072_95679125	0.381687	SOX3_SOX2	ENST00000515059.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chrX_+_55744166_55744222	0.379601	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr4_-_159080806_159080833	0.372462	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr11_-_111794446_111794471	0.360683	SOX3_SOX2	ENST00000527950.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr3_-_48470838_48470872	0.360296	SOX3_SOX2	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr1_-_32801825_32801980	0.356981	SOX3_SOX2	ENST00000329421.7|MARCKSL1|ENSG00000175130.6|MARCKS-like 1
hg19_v2_chr4_+_41614720_41614734	0.355372	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr9_-_95298314_95298340	0.354458	SOX3_SOX2	ENST00000344604.5|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific 	ENST00000375540.1|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr14_-_22005018_22005040	0.349636	SOX3_SOX2	ENST00000546363.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr11_-_111781554_111781584	0.348897	SOX3_SOX2	ENST00000526167.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000528961.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr1_-_156828810_156828914	0.346117	SOX3_SOX2	ENST00000368195.3|INSRR|ENSG00000027644.4|insulin receptor-related receptor
hg19_v2_chr6_+_72596406_72596454	0.339469	SOX3_SOX2	ENST00000491071.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr10_-_70092671_70092806	0.335908	SOX3_SOX2	ENST00000358769.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000432941.1|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000495025.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr8_-_17579726_17579759	0.333178	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr12_-_7281469_7281538	0.333164	SOX3_SOX2	ENST00000542370.1|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular 	ENST00000266560.3|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular
hg19_v2_chr10_+_60759378_60759409	0.328275	SOX3_SOX2	ENST00000432535.1|LINC00844|ENSG00000237949.1|long intergenic non-protein coding RNA 844
hg19_v2_chr1_+_200993071_200993094	0.328107	SOX3_SOX2	ENST00000446333.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1	ENST00000458003.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1
hg19_v2_chr1_+_33722080_33722174	0.327327	SOX3_SOX2	ENST00000483388.1|ZNF362|ENSG00000160094.10|zinc finger protein 362 	ENST00000539719.1|ZNF362|ENSG00000160094.10|zinc finger protein 362
hg19_v2_chr15_-_52944231_52944268	0.326252	SOX3_SOX2	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr1_+_11751748_11751798	0.324593	SOX3_SOX2	ENST00000294485.5|DRAXIN|ENSG00000162490.6|dorsal inhibitory axon guidance protein
hg19_v2_chr4_-_2264015_2264041	0.320992	SOX3_SOX2	ENST00000337190.2|MXD4|ENSG00000123933.10|MAX dimerization protein 4
hg19_v2_chr5_-_175964366_175964429	0.318804	SOX3_SOX2	ENST00000274811.4|RNF44|ENSG00000146083.7|ring finger protein 44
hg19_v2_chr11_-_111781610_111781617	0.317996	SOX3_SOX2	ENST00000525823.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr3_-_58563094_58563126	0.314204	SOX3_SOX2	ENST00000464064.1|FAM107A|ENSG00000168309.12|family with sequence similarity 107, member A
hg19_v2_chr11_-_111781454_111781513	0.313512	SOX3_SOX2	ENST00000533280.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr15_-_82338460_82338496	0.305877	SOX3_SOX2	ENST00000558133.1|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B 	ENST00000329713.4|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B
hg19_v2_chr15_+_22382382_22382382	0.30557	SOX3_SOX2	ENST00000328795.4|OR4N4|ENSG00000183706.4|olfactory receptor, family 4, subfamily N, member 4
hg19_v2_chrX_+_84499081_84499115	0.301194	SOX3_SOX2	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr16_-_11730213_11730238	0.296749	SOX3_SOX2	ENST00000576334.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574848.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr1_+_197886461_197886558	0.294262	SOX3_SOX2	ENST00000367388.3|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000337020.2|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367387.4|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr8_-_21988558_21988566	0.292704	SOX3_SOX2	ENST00000312841.8|HR|ENSG00000168453.10|hair growth associated
hg19_v2_chr7_-_19813192_19813256	0.291594	SOX3_SOX2	ENST00000422233.1|TMEM196|ENSG00000173452.9|transmembrane protein 196 	ENST00000433641.1|TMEM196|ENSG00000173452.9|transmembrane protein 196
hg19_v2_chr19_-_20844343_20844351	0.290989	SOX3_SOX2	ENST00000595405.1|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr11_+_57365150_57365276	0.290753	SOX3_SOX2	ENST00000457869.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000340687.6|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378323.4|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378324.2|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000403558.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
hg19_v2_chr7_+_20370746_20370778	0.287696	SOX3_SOX2	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr2_-_1748214_1748295	0.285704	SOX3_SOX2	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr3_-_87040233_87040257	0.280118	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr2_-_175869936_175869954	0.278173	SOX3_SOX2	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr2_+_210517895_210518021	0.276602	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr9_+_139874683_139874714	0.273782	SOX3_SOX2	ENST00000444903.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chr6_+_112375275_112375334	0.271551	SOX3_SOX2	ENST00000368666.2|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3 	ENST00000604763.1|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3 	ENST00000230529.5|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3
hg19_v2_chr17_-_9940058_9940074	0.270178	SOX3_SOX2	ENST00000585266.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chrX_-_142722897_142723019	0.269938	SOX3_SOX2	ENST00000338017.4|SLITRK4|ENSG00000179542.11|SLIT and NTRK-like family, member 4
hg19_v2_chr4_-_175443943_175444049	0.268269	SOX3_SOX2	ENST00000296522.6|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr17_+_7608511_7608538	0.265167	SOX3_SOX2	ENST00000226091.2|EFNB3|ENSG00000108947.4|ephrin-B3
hg19_v2_chr3_+_39509070_39509101	0.26027	SOX3_SOX2	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr20_-_50418947_50418964	0.259726	SOX3_SOX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr21_+_27011584_27011618	0.25872	SOX3_SOX2	ENST00000400532.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000480456.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000312957.5|JAM2|ENSG00000154721.10|junctional adhesion molecule 2
hg19_v2_chr17_+_1674982_1675041	0.254281	SOX3_SOX2	ENST00000572048.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000573763.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr20_-_50418972_50419029	0.252566	SOX3_SOX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr20_-_50419055_50419066	0.252332	SOX3_SOX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chrX_+_80457442_80457501	0.251201	SOX3_SOX2	ENST00000373212.5|SH3BGRL|ENSG00000131171.8|SH3 domain binding glutamic acid-rich protein like
hg19_v2_chr12_+_31079652_31079892	0.249157	SOX3_SOX2	ENST00000546076.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000535215.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000544427.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000261177.9|TSPAN11|ENSG00000110900.10|tetraspanin 11
hg19_v2_chr1_-_156217829_156217867	0.24914	SOX3_SOX2	ENST00000356983.2|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000335852.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000340183.5|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000540423.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr1_+_164529004_164529060	0.248807	SOX3_SOX2	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr19_-_55691377_55691406	0.246931	SOX3_SOX2	ENST00000589172.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr14_+_96505659_96505664	0.246726	SOX3_SOX2	ENST00000555004.1|C14orf132|ENSG00000227051.4|chromosome 14 open reading frame 132
hg19_v2_chr6_-_128841503_128841870	0.245578	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr1_-_156217822_156217823	0.243587	SOX3_SOX2	ENST00000368270.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr4_+_86699834_86699889	0.241684	SOX3_SOX2	ENST00000395183.2|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr8_-_108510224_108510283	0.240969	SOX3_SOX2	ENST00000517746.1|ANGPT1|ENSG00000154188.5|angiopoietin 1 	ENST00000297450.3|ANGPT1|ENSG00000154188.5|angiopoietin 1
hg19_v2_chr12_+_80750134_80750134	0.23865	SOX3_SOX2	ENST00000546620.1|OTOGL|ENSG00000165899.6|otogelin-like
hg19_v2_chr5_+_140593509_140593509	0.23861	SOX3_SOX2	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chr4_-_90757364_90757396	0.236948	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr1_-_3528034_3528077	0.236835	SOX3_SOX2	ENST00000356575.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr14_-_91884115_91884127	0.235553	SOX3_SOX2	ENST00000389857.6|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr1_-_161015752_161015778	0.234609	SOX3_SOX2	ENST00000435396.1|USF1|ENSG00000158773.10|upstream transcription factor 1 	ENST00000368021.3|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr4_-_5890145_5890234	0.234317	SOX3_SOX2	ENST00000397890.2|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr3_+_149689066_149689066	0.233527	SOX3_SOX2	ENST00000593416.1|AC117395.1|ENSG00000268175.1|LOC646903 protein; Uncharacterized protein
hg19_v2_chr1_-_156217875_156217885	0.230026	SOX3_SOX2	ENST00000292291.5|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr2_+_105050794_105050854	0.229068	SOX3_SOX2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr2_+_210444748_210444770	0.227769	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr16_-_31085033_31085078	0.227413	SOX3_SOX2	ENST00000414399.1|ZNF668|ENSG00000167394.8|zinc finger protein 668
hg19_v2_chr5_+_15500280_15500312	0.227269	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr10_-_70092635_70092666	0.225793	SOX3_SOX2	ENST00000309049.4|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr5_-_39425290_39425336	0.223615	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr18_+_6729698_6729724	0.223567	SOX3_SOX2	ENST00000383472.4|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr11_-_117747434_117747453	0.222907	SOX3_SOX2	ENST00000529335.2|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000530956.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000260282.4|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6
hg19_v2_chr6_-_46459099_46459132	0.221935	SOX3_SOX2	ENST00000371374.1|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr8_-_48651648_48651648	0.220378	SOX3_SOX2	ENST00000408965.3|CEBPD|ENSG00000221869.4|CCAAT/enhancer binding protein (C/EBP), delta
hg19_v2_chr5_+_140235469_140235634	0.220021	SOX3_SOX2	ENST00000506939.2|PCDHA10|ENSG00000250120.2|protocadherin alpha 10 	ENST00000307360.5|PCDHA10|ENSG00000250120.2|protocadherin alpha 10
hg19_v2_chr5_+_148960931_148961073	0.21996	SOX3_SOX2	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr3_-_114790179_114790222	0.219865	SOX3_SOX2	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr12_+_94542459_94542513	0.219216	SOX3_SOX2	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr2_+_30454390_30454409	0.219047	SOX3_SOX2	ENST00000395323.3|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000406087.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000404397.1|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr6_-_24877490_24877583	0.217441	SOX3_SOX2	ENST00000540914.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B 	ENST00000378023.4|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr1_-_46598371_46598708	0.216102	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr16_-_28550348_28550495	0.215889	SOX3_SOX2	ENST00000324873.6|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr7_+_141463897_141463897	0.215857	SOX3_SOX2	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr6_+_126240442_126240459	0.215355	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr5_-_39425222_39425283	0.214619	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr3_+_44596679_44596726	0.213319	SOX3_SOX2	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr14_+_91580777_91580793	0.213196	SOX3_SOX2	ENST00000525393.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000428926.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517362.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chrX_+_100333709_100333876	0.212489	SOX3_SOX2	ENST00000372930.4|TMEM35|ENSG00000126950.7|transmembrane protein 35
hg19_v2_chr19_-_7553852_7553874	0.212292	SOX3_SOX2	ENST00000593547.1|PEX11G|ENSG00000104883.3|peroxisomal biogenesis factor 11 gamma
hg19_v2_chr10_+_72972281_72972336	0.210365	SOX3_SOX2	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr14_+_91580708_91580730	0.210082	SOX3_SOX2	ENST00000518868.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr1_-_3447967_3448012	0.209377	SOX3_SOX2	ENST00000294599.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr1_+_144339738_144339738	0.206842	SOX3_SOX2	ENST00000538264.1|AL592284.1|ENSG00000231360.2|Protein LOC642441
hg19_v2_chr1_-_1243392_1243403	0.204458	SOX3_SOX2	ENST00000354700.5|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr4_-_90756769_90756846	0.204042	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr4_-_175443788_175443795	0.20391	SOX3_SOX2	ENST00000541923.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr14_-_73493784_73493822	0.203717	SOX3_SOX2	ENST00000553891.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr3_+_133118839_133118925	0.201268	SOX3_SOX2	ENST00000302334.2|BFSP2|ENSG00000170819.4|beaded filament structural protein 2, phakinin
hg19_v2_chr22_-_32555275_32555296	0.20065	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr14_+_91581011_91581044	0.200433	SOX3_SOX2	ENST00000523894.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522322.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523771.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr7_+_70597109_70597155	0.193684	SOX3_SOX2	ENST00000333538.5|WBSCR17|ENSG00000185274.7|Williams-Beuren syndrome chromosome region 17
hg19_v2_chr12_+_31477250_31477250	0.192966	SOX3_SOX2	ENST00000313737.4|AC024940.1|ENSG00000177340.4|AC024940.1
hg19_v2_chr14_+_95078714_95078739	0.192042	SOX3_SOX2	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr12_-_10588539_10588600	0.191142	SOX3_SOX2	ENST00000381902.2|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000381901.1|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000539033.1|NKG2-E|ENSG00000255641.1|Uncharacterized protein
hg19_v2_chr11_-_10829851_10829860	0.190491	SOX3_SOX2	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr1_-_153283194_153283194	0.188305	SOX3_SOX2	ENST00000290722.1|PGLYRP3|ENSG00000159527.3|peptidoglycan recognition protein 3
hg19_v2_chrX_+_102469997_102470094	0.184261	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr6_+_89790490_89790506	0.182867	SOX3_SOX2	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr3_+_183353356_183353450	0.182379	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr8_-_93115445_93115462	0.18211	SOX3_SOX2	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr6_+_89790459_89790479	0.182083	SOX3_SOX2	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr11_+_1889880_1889903	0.181216	SOX3_SOX2	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr2_+_74685527_74685599	0.179996	SOX3_SOX2	ENST00000393972.3|WBP1|ENSG00000239779.2|WW domain binding protein 1 	ENST00000409737.1|WBP1|ENSG00000239779.2|WW domain binding protein 1 	ENST00000428943.1|WBP1|ENSG00000239779.2|WW domain binding protein 1
hg19_v2_chrX_+_69488174_69488202	0.179483	SOX3_SOX2	ENST00000480877.2|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin) 	ENST00000307959.8|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr3_-_48700310_48700348	0.177673	SOX3_SOX2	ENST00000164024.4|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3 	ENST00000544264.1|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3
hg19_v2_chr5_-_39425068_39425098	0.177178	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr2_+_181845298_181845378	0.177017	SOX3_SOX2	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr13_+_31506818_31506853	0.176771	SOX3_SOX2	ENST00000380473.3|TEX26|ENSG00000175664.5|testis expressed 26
hg19_v2_chr4_-_175443484_175443650	0.176489	SOX3_SOX2	ENST00000514584.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000542498.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000296521.7|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000422112.2|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000504433.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr4_+_15480828_15480868	0.176267	SOX3_SOX2	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr14_-_73493825_73493920	0.175877	SOX3_SOX2	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr15_+_34310428_34310428	0.175749	SOX3_SOX2	ENST00000557872.1|CHRM5|ENSG00000184984.8|cholinergic receptor, muscarinic 5
hg19_v2_chr4_+_41258786_41258962	0.175451	SOX3_SOX2	ENST00000503431.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000284440.4|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000508768.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000512788.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
hg19_v2_chrX_-_13956497_13956536	0.17537	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr8_-_120685608_120685693	0.173713	SOX3_SOX2	ENST00000427067.2|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chrX_+_150866779_150866779	0.173463	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr3_+_39509163_39509180	0.172333	SOX3_SOX2	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr2_-_238499303_238499331	0.17186	SOX3_SOX2	ENST00000409576.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chrX_+_103031421_103031546	0.171124	SOX3_SOX2	ENST00000433491.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000418604.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000443502.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr2_+_177015950_177015950	0.170712	SOX3_SOX2	ENST00000306324.3|HOXD4|ENSG00000170166.5|homeobox D4
hg19_v2_chr11_-_2162468_2162497	0.170523	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr1_+_244998602_244998646	0.169752	SOX3_SOX2	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr3_-_116163830_116163855	0.169241	SOX3_SOX2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr10_+_70320413_70320413	0.169236	SOX3_SOX2	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr12_-_95611149_95611249	0.167825	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr1_-_161014731_161014788	0.167654	SOX3_SOX2	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr2_-_166060571_166060582	0.16738	SOX3_SOX2	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr9_-_130712995_130713006	0.167369	SOX3_SOX2	ENST00000373084.4|FAM102A|ENSG00000167106.7|family with sequence similarity 102, member A
hg19_v2_chrX_+_103031758_103031779	0.167299	SOX3_SOX2	ENST00000303958.2|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000361621.2|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr22_+_30792846_30792978	0.166589	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr9_+_2622085_2622174	0.165211	SOX3_SOX2	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr13_-_28674693_28674747	0.163708	SOX3_SOX2	ENST00000537084.1|FLT3|ENSG00000122025.10|fms-related tyrosine kinase 3 	ENST00000241453.7|FLT3|ENSG00000122025.10|fms-related tyrosine kinase 3 	ENST00000380982.4|FLT3|ENSG00000122025.10|fms-related tyrosine kinase 3
hg19_v2_chr17_+_4046462_4046550	0.161892	SOX3_SOX2	ENST00000577075.2|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000575251.1|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000301391.3|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2
hg19_v2_chr12_+_133707204_133707236	0.161681	SOX3_SOX2	ENST00000426665.2|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr1_+_164528866_164528877	0.1615	SOX3_SOX2	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr12_-_52887034_52887049	0.160831	SOX3_SOX2	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr1_-_108231101_108231133	0.160732	SOX3_SOX2	ENST00000544443.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000415432.2|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chr16_+_57673430_57673438	0.160465	SOX3_SOX2	ENST00000540164.2|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568531.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr2_+_223536428_223536505	0.160353	SOX3_SOX2	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr12_+_95611569_95611608	0.160077	SOX3_SOX2	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr16_-_74455290_74455290	0.159946	SOX3_SOX2	ENST00000339953.5|CLEC18B|ENSG00000140839.7|C-type lectin domain family 18, member B
hg19_v2_chr2_-_166060552_166060566	0.159927	SOX3_SOX2	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr20_+_30598231_30598260	0.15981	SOX3_SOX2	ENST00000300415.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like 	ENST00000262659.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like
hg19_v2_chr10_-_49482907_49482941	0.15951	SOX3_SOX2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr7_-_99869799_99869855	0.159209	SOX3_SOX2	ENST00000436886.2|GATS|ENSG00000160844.6|GATS, stromal antigen 3 opposite strand
hg19_v2_chr3_-_11623804_11623865	0.158463	SOX3_SOX2	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr22_-_32341336_32341336	0.157282	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr16_+_54964740_54964789	0.155279	SOX3_SOX2	ENST00000394636.4|IRX5|ENSG00000176842.10|iroquois homeobox 5
hg19_v2_chr1_-_1334685_1334722	0.155231	SOX3_SOX2	ENST00000400809.3|CCNL2|ENSG00000221978.7|cyclin L2 	ENST00000408918.4|CCNL2|ENSG00000221978.7|cyclin L2
hg19_v2_chr17_+_27920486_27920525	0.154776	SOX3_SOX2	ENST00000394859.3|ANKRD13B|ENSG00000198720.8|ankyrin repeat domain 13B
hg19_v2_chr19_+_1491144_1491223	0.153861	SOX3_SOX2	ENST00000233596.3|REEP6|ENSG00000115255.6|receptor accessory protein 6
hg19_v2_chr1_-_17307173_17307330	0.153751	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr1_+_235491714_235491895	0.153549	SOX3_SOX2	ENST00000471812.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000358966.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000282841.5|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000391855.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr2_+_111880242_111880289	0.153386	SOX3_SOX2	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chrX_-_139866723_139866723	0.152835	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr20_+_61448376_61448418	0.152678	SOX3_SOX2	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr20_-_30458019_30458083	0.152662	SOX3_SOX2	ENST00000486996.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15 	ENST00000398084.2|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr1_+_150229554_150229660	0.151873	SOX3_SOX2	ENST00000369111.4|CA14|ENSG00000118298.6|carbonic anhydrase XIV
hg19_v2_chr2_-_183387430_183387465	0.151484	SOX3_SOX2	ENST00000410103.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr20_-_4804244_4804293	0.149762	SOX3_SOX2	ENST00000379400.3|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr3_+_145782358_145782358	0.149691	SOX3_SOX2	ENST00000422482.1|AC107021.1|ENSG00000232013.1|HCG1786590; PRO2533; Uncharacterized protein
hg19_v2_chr14_+_21467414_21467463	0.148931	SOX3_SOX2	ENST00000554422.1|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2 	ENST00000298681.4|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2
hg19_v2_chr17_+_48503519_48503597	0.147675	SOX3_SOX2	ENST00000300441.4|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000541920.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000506582.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000504392.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000427954.2|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2
hg19_v2_chr1_+_79115503_79115530	0.147524	SOX3_SOX2	ENST00000370747.4|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000438486.1|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000545124.1|IFI44|ENSG00000137965.6|interferon-induced protein 44
hg19_v2_chr5_+_170288856_170288920	0.146352	SOX3_SOX2	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr20_-_36889127_36889174	0.146305	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr5_+_82767583_82767744	0.146098	SOX3_SOX2	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr17_+_80416482_80416600	0.145877	SOX3_SOX2	ENST00000309794.11|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000345415.7|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000457415.3|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000584411.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000412079.2|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000577432.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr20_+_33292068_33292164	0.145821	SOX3_SOX2	ENST00000374810.3|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000374809.2|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000451665.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chr9_+_107526443_107526477	0.145226	SOX3_SOX2	ENST00000374762.3|NIPSNAP3B|ENSG00000165028.7|nipsnap homolog 3B (C. elegans)
hg19_v2_chr3_+_46618727_46618745	0.144926	SOX3_SOX2	ENST00000296145.5|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr1_+_236305826_236305877	0.143835	SOX3_SOX2	ENST00000366592.3|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B 	ENST00000366591.4|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B
hg19_v2_chrX_+_45364633_45364657	0.143118	SOX3_SOX2	ENST00000435394.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1	ENST00000609127.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1
hg19_v2_chr1_-_935519_935552	0.142873	SOX3_SOX2	ENST00000428771.2|HES4|ENSG00000188290.6|hes family bHLH transcription factor 4
hg19_v2_chr16_-_28550320_28550345	0.142863	SOX3_SOX2	ENST00000395641.2|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr20_-_3996036_3996153	0.142595	SOX3_SOX2	ENST00000336095.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr19_+_7580944_7581031	0.142055	SOX3_SOX2	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr7_+_30960915_30961105	0.14103	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr12_-_88974236_88974256	0.140382	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr1_-_31712401_31712401	0.140144	SOX3_SOX2	ENST00000373736.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr1_-_2461684_2461710	0.139412	SOX3_SOX2	ENST00000378453.3|HES5|ENSG00000197921.5|hes family bHLH transcription factor 5
hg19_v2_chr13_-_110959478_110959511	0.139054	SOX3_SOX2	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chr1_+_93913713_93913839	0.138625	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr1_+_25071848_25071944	0.137947	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chrX_-_128977364_128977436	0.136607	SOX3_SOX2	ENST00000371064.3|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr16_-_29910365_29910430	0.136207	SOX3_SOX2	ENST00000346932.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000350527.3|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000537485.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000568380.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr17_+_51900239_51900312	0.135452	SOX3_SOX2	ENST00000268919.4|KIF2B|ENSG00000141200.6|kinesin family member 2B
hg19_v2_chr15_+_74218787_74218813	0.135061	SOX3_SOX2	ENST00000261921.7|LOXL1|ENSG00000129038.11|lysyl oxidase-like 1
hg19_v2_chr6_-_41863098_41863120	0.134755	SOX3_SOX2	ENST00000373006.1|USP49|ENSG00000164663.9|ubiquitin specific peptidase 49
hg19_v2_chr19_-_51472823_51472929	0.133813	SOX3_SOX2	ENST00000310157.2|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr17_+_80416050_80416235	0.132072	SOX3_SOX2	ENST00000579198.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000390006.4|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000580296.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr16_-_67217844_67217943	0.131823	SOX3_SOX2	ENST00000563902.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000561621.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000290881.7|KIAA0895L|ENSG00000196123.8|KIAA0895-like
hg19_v2_chr5_-_179780312_179780387	0.130123	SOX3_SOX2	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr11_-_2162162_2162246	0.130054	SOX3_SOX2	ENST00000381389.1|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr4_+_41540160_41540196	0.129923	SOX3_SOX2	ENST00000503057.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000511496.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr4_-_186733363_186733392	0.129538	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr1_-_182641367_182641386	0.1293	SOX3_SOX2	ENST00000508450.1|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr20_-_1165117_1165117	0.128737	SOX3_SOX2	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr1_+_89990431_89990493	0.128667	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr2_-_2334888_2335053	0.128367	SOX3_SOX2	ENST00000428368.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like 	ENST00000399161.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like
hg19_v2_chr16_+_2880296_2880310	0.128326	SOX3_SOX2	ENST00000571723.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr17_-_7297519_7297593	0.128007	SOX3_SOX2	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr3_-_105588231_105588396	0.127653	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chrX_+_84499038_84499078	0.127502	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr15_+_33603147_33603187	0.127444	SOX3_SOX2	ENST00000415757.3|RYR3|ENSG00000198838.7|ryanodine receptor 3 	ENST00000389232.4|RYR3|ENSG00000198838.7|ryanodine receptor 3
hg19_v2_chr3_+_54157480_54157547	0.127325	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr3_-_112360116_112360153	0.125644	SOX3_SOX2	ENST00000206423.3|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80 	ENST00000439685.2|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr21_+_30671690_30671762	0.125518	SOX3_SOX2	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr6_+_101846664_101846702	0.124807	SOX3_SOX2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr19_+_56159509_56159643	0.123473	SOX3_SOX2	ENST00000586790.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106 	ENST00000591578.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106 	ENST00000588740.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106
hg19_v2_chr20_+_62492566_62492566	0.122933	SOX3_SOX2	ENST00000369916.3|ABHD16B|ENSG00000183260.5|abhydrolase domain containing 16B
hg19_v2_chr12_-_71003568_71003629	0.122719	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr7_-_29186008_29186172	0.122621	SOX3_SOX2	ENST00000396276.3|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000265394.5|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chr1_-_155177677_155177739	0.12238	SOX3_SOX2	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr19_-_56904799_56904919	0.122354	SOX3_SOX2	ENST00000589895.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000589143.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000301310.4|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000586929.1|ZNF582|ENSG00000018869.12|zinc finger protein 582
hg19_v2_chr19_-_3029011_3029174	0.121119	SOX3_SOX2	ENST00000590536.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000587137.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000455444.2|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000262953.6|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)
hg19_v2_chr1_+_16085244_16085255	0.121076	SOX3_SOX2	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr16_+_2880254_2880278	0.120762	SOX3_SOX2	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr4_+_78078304_78078406	0.120679	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr19_+_9732156_9732223	0.120449	SOX3_SOX2	ENST00000586614.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000587536.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000591056.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000592851.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82
hg19_v2_chr15_+_76629064_76629073	0.120097	SOX3_SOX2	ENST00000290759.4|ISL2|ENSG00000159556.5|ISL LIM homeobox 2
hg19_v2_chr3_-_49459878_49459912	0.120068	SOX3_SOX2	ENST00000546031.1|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000458307.2|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000430521.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr10_-_61122220_61122358	0.119757	SOX3_SOX2	ENST00000422313.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000435852.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000442566.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373868.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000277705.6|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373867.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000419214.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chr19_+_57640011_57640011	0.119717	SOX3_SOX2	ENST00000598197.1|USP29|ENSG00000131864.6|ubiquitin specific peptidase 29
hg19_v2_chr6_+_112375462_112375536	0.119266	SOX3_SOX2	ENST00000361714.1|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3
hg19_v2_chr9_-_115819039_115819082	0.118949	SOX3_SOX2	ENST00000555206.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr7_+_73245193_73245337	0.118722	SOX3_SOX2	ENST00000340958.2|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr11_+_36317830_36317850	0.118543	SOX3_SOX2	ENST00000530639.1|PRR5L|ENSG00000135362.9|proline rich 5 like
hg19_v2_chr19_+_56159362_56159405	0.118349	SOX3_SOX2	ENST00000593069.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106 	ENST00000308964.3|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106
hg19_v2_chr18_-_7117813_7117843	0.118335	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr17_-_7297833_7297889	0.118041	SOX3_SOX2	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr4_+_124317940_124317987	0.117964	SOX3_SOX2	ENST00000505319.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila) 	ENST00000339241.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr7_-_27142290_27142430	0.117269	SOX3_SOX2	ENST00000222718.5|HOXA2|ENSG00000105996.5|homeobox A2
hg19_v2_chr1_+_185703513_185703683	0.117069	SOX3_SOX2	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr20_+_20348740_20348765	0.116693	SOX3_SOX2	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chrX_-_73512411_73512444	0.116173	SOX3_SOX2	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr5_-_150284351_150284443	0.115594	SOX3_SOX2	ENST00000427179.1|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr1_-_33815486_33815517	0.115368	SOX3_SOX2	ENST00000373418.3|PHC2|ENSG00000134686.12|polyhomeotic homolog 2 (Drosophila)
hg19_v2_chr12_-_58027138_58027159	0.115366	SOX3_SOX2	ENST00000341156.4|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
hg19_v2_chr3_-_49459865_49459876	0.115122	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr9_+_36136700_36136742	0.115072	SOX3_SOX2	ENST00000396613.3|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377959.1|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377960.4|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2
hg19_v2_chr8_+_104831472_104831510	0.114766	SOX3_SOX2	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr16_-_80926457_80926494	0.114712	SOX3_SOX2	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr14_+_75746781_75746896	0.114247	SOX3_SOX2	ENST00000555347.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr6_+_123100853_123100904	0.114206	SOX3_SOX2	ENST00000356535.4|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr19_+_56989609_56989625	0.113446	SOX3_SOX2	ENST00000601875.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr3_+_38323785_38323789	0.113434	SOX3_SOX2	ENST00000466887.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14 	ENST00000448498.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14
hg19_v2_chr1_-_57431679_57431810	0.113369	SOX3_SOX2	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr1_+_47799542_47799624	0.112967	SOX3_SOX2	ENST00000471289.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 	ENST00000450808.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
hg19_v2_chr9_+_36036430_36036430	0.11282	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr16_+_57673207_57673343	0.112499	SOX3_SOX2	ENST00000564783.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000564729.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000565976.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566508.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000544297.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr17_-_72358001_72358085	0.111925	SOX3_SOX2	ENST00000375366.3|BTBD17|ENSG00000204347.3|BTB (POZ) domain containing 17
hg19_v2_chr14_-_22005062_22005082	0.111626	SOX3_SOX2	ENST00000317492.5|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr19_+_56905024_56905180	0.111534	SOX3_SOX2	ENST00000591172.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000589888.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000587979.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000585659.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000593109.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head)
hg19_v2_chrX_+_86772787_86772817	0.111205	SOX3_SOX2	ENST00000373114.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr1_+_155036204_155036238	0.111072	SOX3_SOX2	ENST00000368409.3|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000359751.4|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000556931.1|EFNA3|ENSG00000143590.9|ephrin-A3 	ENST00000505139.1|EFNA3|ENSG00000251246.1|Ephrin-A3; Uncharacterized protein; cDNA FLJ57652, highly similar to Ephrin-A3  	ENST00000427683.2|EFNA4|ENSG00000243364.3|ephrin-A4
hg19_v2_chr22_-_22090043_22090058	0.110687	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr17_-_78009647_78009681	0.110639	SOX3_SOX2	ENST00000310924.2|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr1_-_221915418_221915518	0.110573	SOX3_SOX2	ENST00000323825.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10 	ENST00000366899.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10
hg19_v2_chr18_+_21718924_21718963	0.110368	SOX3_SOX2	ENST00000399496.3|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr1_+_212797789_212797818	0.110169	SOX3_SOX2	ENST00000294829.3|FAM71A|ENSG00000162771.6|family with sequence similarity 71, member A
hg19_v2_chr17_+_57642886_57643006	0.109521	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr1_+_150039369_150039444	0.108615	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr7_+_30185406_30185417	0.108335	SOX3_SOX2	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr2_+_17721920_17721933	0.108319	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr8_-_60031762_60031803	0.108176	SOX3_SOX2	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr15_+_89631647_89631725	0.108157	SOX3_SOX2	ENST00000569550.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565066.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565973.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr1_+_151739131_151739177	0.107939	SOX3_SOX2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr17_+_27573875_27573881	0.107609	SOX3_SOX2	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chr7_-_128415844_128415849	0.10752	SOX3_SOX2	ENST00000249389.2|OPN1SW|ENSG00000128617.2|opsin 1 (cone pigments), short-wave-sensitive
hg19_v2_chr11_-_18813353_18813389	0.10729	SOX3_SOX2	ENST00000358540.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396171.4|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396167.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
hg19_v2_chrX_+_84498989_84499003	0.10725	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr7_+_20370300_20370359	0.106746	SOX3_SOX2	ENST00000537992.1|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr9_+_116638562_116638606	0.106501	SOX3_SOX2	ENST00000374126.5|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000288466.7|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr10_+_99496872_99496954	0.105989	SOX3_SOX2	ENST00000337540.7|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27 	ENST00000357540.4|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27 	ENST00000370613.3|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27 	ENST00000370610.3|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27 	ENST00000393677.4|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27 	ENST00000453958.2|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27 	ENST00000359980.3|ZFYVE27|ENSG00000155256.13|zinc finger, FYVE domain containing 27
hg19_v2_chr6_-_27440460_27440505	0.10584	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr7_-_14942944_14942997	0.105103	SOX3_SOX2	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr8_-_70745575_70745625	0.104836	SOX3_SOX2	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr9_-_73483958_73483985	0.104759	SOX3_SOX2	ENST00000377101.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377106.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000360823.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377105.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr3_-_165555200_165555260	0.104549	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr6_-_27440837_27440912	0.104546	SOX3_SOX2	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr3_+_46616017_46616045	0.104487	SOX3_SOX2	ENST00000542931.1|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr12_+_133614119_133614166	0.104399	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr2_+_74685413_74685456	0.104386	SOX3_SOX2	ENST00000233615.2|WBP1|ENSG00000239779.2|WW domain binding protein 1
hg19_v2_chr10_+_99079008_99079060	0.103769	SOX3_SOX2	ENST00000371021.3|FRAT1|ENSG00000165879.7|frequently rearranged in advanced T-cell lymphomas
hg19_v2_chr17_-_62502022_62502074	0.103224	SOX3_SOX2	ENST00000578804.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr3_+_36421826_36421844	0.103073	SOX3_SOX2	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr20_-_30458491_30458550	0.102821	SOX3_SOX2	ENST00000339738.5|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr4_+_47487285_47487366	0.101818	SOX3_SOX2	ENST00000273859.3|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D 	ENST00000504445.1|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D
hg19_v2_chr12_-_6772303_6772314	0.101352	SOX3_SOX2	ENST00000396807.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000446105.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000341550.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr7_-_29234802_29234895	0.101253	SOX3_SOX2	ENST00000449801.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000409850.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chrX_+_135229600_135229624	0.100445	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr19_+_58790314_58790358	0.100423	SOX3_SOX2	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr19_-_7553889_7553929	0.100396	SOX3_SOX2	ENST00000221480.1|PEX11G|ENSG00000104883.3|peroxisomal biogenesis factor 11 gamma
hg19_v2_chr4_+_153857468_153857520	0.100344	SOX3_SOX2	ENST00000511601.1|FHDC1|ENSG00000137460.4|FH2 domain containing 1
hg19_v2_chr19_+_3880581_3880692	0.100041	SOX3_SOX2	ENST00000450849.2|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000301260.6|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000398448.3|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type
hg19_v2_chrX_+_153686614_153686629	0.0999504	SOX3_SOX2	ENST00000369682.3|PLXNA3|ENSG00000130827.5|plexin A3
hg19_v2_chr5_-_54281491_54281517	0.0993791	SOX3_SOX2	ENST00000381405.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr7_+_12727250_12727265	0.0993771	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr19_-_10047219_10047235	0.0991422	SOX3_SOX2	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr16_+_68573640_68573698	0.0991054	SOX3_SOX2	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr22_-_31688431_31688520	0.0987887	SOX3_SOX2	ENST00000402249.3|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000443175.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000215912.5|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000441972.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr3_-_183735651_183735727	0.0985872	SOX3_SOX2	ENST00000427120.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000392579.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000382494.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000446941.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr1_-_1243252_1243318	0.098555	SOX3_SOX2	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr1_+_104198377_104198377	0.0984474	SOX3_SOX2	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr1_+_153232160_153232176	0.0983006	SOX3_SOX2	ENST00000368742.3|LOR|ENSG00000203782.5|loricrin
hg19_v2_chr15_+_84115868_84115980	0.0982364	SOX3_SOX2	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr16_+_11762270_11762344	0.0982092	SOX3_SOX2	ENST00000329565.5|SNN|ENSG00000184602.5|stannin
hg19_v2_chr3_-_4927447_4927479	0.0981523	SOX3_SOX2	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr19_+_34287751_34287807	0.0980329	SOX3_SOX2	ENST00000590771.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000589786.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000284006.6|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000588881.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15
hg19_v2_chr8_-_72274095_72274116	0.0979161	SOX3_SOX2	ENST00000303824.7|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr18_+_29027696_29027774	0.097912	SOX3_SOX2	ENST00000257189.4|DSG3|ENSG00000134757.4|desmoglein 3
hg19_v2_chr5_-_146435501_146435537	0.0978421	SOX3_SOX2	ENST00000336640.6|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr19_-_19626838_19626991	0.0977909	SOX3_SOX2	ENST00000360913.3|TSSK6|ENSG00000178093.12|testis-specific serine kinase 6
hg19_v2_chr7_+_95401851_95401876	0.0972661	SOX3_SOX2	ENST00000447467.2|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chrX_-_11284095_11284131	0.0972095	SOX3_SOX2	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr10_+_94451574_94451612	0.0971701	SOX3_SOX2	ENST00000492654.2|HHEX|ENSG00000152804.6|hematopoietically expressed homeobox
hg19_v2_chr11_+_46402482_46402502	0.096914	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr18_+_28956740_28956846	0.0968789	SOX3_SOX2	ENST00000308128.4|DSG4|ENSG00000175065.7|desmoglein 4 	ENST00000359747.4|DSG4|ENSG00000175065.7|desmoglein 4
hg19_v2_chr12_+_124457746_124457842	0.0966226	SOX3_SOX2	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr14_+_22966642_22966642	0.0964348	SOX3_SOX2	ENST00000390496.1|TRAJ41|ENSG00000211848.1|T cell receptor alpha joining 41
hg19_v2_chr8_+_105235572_105235610	0.0964001	SOX3_SOX2	ENST00000523362.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr1_-_28520384_28520393	0.0960672	SOX3_SOX2	ENST00000305392.3|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr1_-_247171347_247171395	0.0958561	SOX3_SOX2	ENST00000339986.7|ZNF695|ENSG00000197472.10|zinc finger protein 695 	ENST00000487338.2|ZNF695|ENSG00000197472.10|zinc finger protein 695
hg19_v2_chr2_+_162272605_162272753	0.0950642	SOX3_SOX2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr12_-_45270151_45270162	0.0947071	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr20_+_68306_68351	0.0943568	SOX3_SOX2	ENST00000382410.2|DEFB125|ENSG00000178591.6|defensin, beta 125
hg19_v2_chr17_+_4487294_4487307	0.0941572	SOX3_SOX2	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr7_-_71868354_71868431	0.0941187	SOX3_SOX2	ENST00000412588.1|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr12_-_45270077_45270143	0.094118	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr9_-_130517522_130517583	0.0940035	SOX3_SOX2	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr5_-_33892204_33892297	0.0939349	SOX3_SOX2	ENST00000504830.1|ADAMTS12|ENSG00000151388.6|ADAM metallopeptidase with thrombospondin type 1 motif, 12
hg19_v2_chr5_-_146435694_146435705	0.0937118	SOX3_SOX2	ENST00000356826.3|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr6_+_155537771_155537868	0.0937037	SOX3_SOX2	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr10_-_30024716_30024739	0.0935941	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr11_-_58611957_58611999	0.0935682	SOX3_SOX2	ENST00000532258.1|GLYATL2|ENSG00000156689.2|glycine-N-acyltransferase-like 2
hg19_v2_chr4_-_80993854_80993906	0.0931889	SOX3_SOX2	ENST00000346652.6|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr9_-_138799070_138799284	0.0929569	SOX3_SOX2	ENST00000389532.4|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1 	ENST00000409386.3|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1
hg19_v2_chr2_+_30370382_30370421	0.0928088	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chrX_+_135229559_135229576	0.092757	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr15_-_40401062_40401093	0.0925655	SOX3_SOX2	ENST00000354670.4|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000559701.1|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000557870.1|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000558774.1|BMF|ENSG00000104081.9|Bcl2 modifying factor
hg19_v2_chr7_+_12726474_12726542	0.092389	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr4_-_87281224_87281375	0.0923727	SOX3_SOX2	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr1_+_42928945_42929025	0.0922293	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chr4_-_109089573_109089585	0.0921496	SOX3_SOX2	ENST00000265165.1|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr11_-_70672645_70672711	0.0919465	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr3_-_3152031_3152064	0.0918975	SOX3_SOX2	ENST00000383846.1|IL5RA|ENSG00000091181.15|interleukin 5 receptor, alpha 	ENST00000427088.1|IL5RA|ENSG00000091181.15|interleukin 5 receptor, alpha 	ENST00000446632.2|IL5RA|ENSG00000091181.15|interleukin 5 receptor, alpha 	ENST00000438560.1|IL5RA|ENSG00000091181.15|interleukin 5 receptor, alpha
hg19_v2_chr6_+_21666633_21666681	0.0917366	SOX3_SOX2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr9_-_98279241_98279339	0.0917069	SOX3_SOX2	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr14_+_70078303_70078321	0.0916477	SOX3_SOX2	ENST00000342745.4|KIAA0247|ENSG00000100647.7|KIAA0247
hg19_v2_chr9_-_130639997_130640022	0.0915163	SOX3_SOX2	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr15_+_84116106_84116283	0.0914839	SOX3_SOX2	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr19_+_55888186_55888204	0.0913822	SOX3_SOX2	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr22_-_31688381_31688418	0.0913318	SOX3_SOX2	ENST00000487265.2|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr12_+_133707161_133707202	0.0911561	SOX3_SOX2	ENST00000538918.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000540609.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000248211.6|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000543271.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000536877.1|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr22_+_25595817_25595840	0.0908143	SOX3_SOX2	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr19_-_40919271_40919294	0.0906921	SOX3_SOX2	ENST00000291825.7|PRX|ENSG00000105227.10|periaxin 	ENST00000324001.7|PRX|ENSG00000105227.10|periaxin
hg19_v2_chr5_+_140625147_140625147	0.0906644	SOX3_SOX2	ENST00000231173.3|PCDHB15|ENSG00000113248.3|protocadherin beta 15
hg19_v2_chr8_-_110620284_110620304	0.0906288	SOX3_SOX2	ENST00000529690.1|SYBU|ENSG00000147642.12|syntabulin (syntaxin-interacting)
hg19_v2_chr11_+_64058820_64058881	0.0902347	SOX3_SOX2	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr5_-_150284532_150284549	0.0902122	SOX3_SOX2	ENST00000394226.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000446148.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000274599.5|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000418587.2|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr21_+_17442799_17442853	0.0898555	SOX3_SOX2	ENST00000602580.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000458468.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602935.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr1_-_93645818_93645918	0.0897769	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr19_-_36705547_36705597	0.0897711	SOX3_SOX2	ENST00000304116.5|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chrX_+_69488155_69488172	0.0897508	SOX3_SOX2	ENST00000374495.3|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr7_+_5322561_5322660	0.0896759	SOX3_SOX2	ENST00000396872.3|SLC29A4|ENSG00000164638.6|solute carrier family 29 (equilibrative nucleoside transporter), member 4 	ENST00000444741.1|SLC29A4|ENSG00000164638.6|solute carrier family 29 (equilibrative nucleoside transporter), member 4 	ENST00000297195.4|SLC29A4|ENSG00000164638.6|solute carrier family 29 (equilibrative nucleoside transporter), member 4 	ENST00000406453.3|SLC29A4|ENSG00000164638.6|solute carrier family 29 (equilibrative nucleoside transporter), member 4
hg19_v2_chr16_+_57653854_57653968	0.0895322	SOX3_SOX2	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr5_-_146435572_146435590	0.0894486	SOX3_SOX2	ENST00000394414.1|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr10_+_103986085_103986085	0.0883052	SOX3_SOX2	ENST00000370005.3|ELOVL3|ENSG00000119915.4|ELOVL fatty acid elongase 3
hg19_v2_chr4_+_4388805_4388855	0.0881102	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr11_+_113779704_113779727	0.0878949	SOX3_SOX2	ENST00000537778.1|HTR3B|ENSG00000149305.2|5-hydroxytryptamine (serotonin) receptor 3B, ionotropic
hg19_v2_chr11_+_64058758_64058797	0.0877192	SOX3_SOX2	ENST00000538767.1|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr17_+_73452695_73452744	0.087499	SOX3_SOX2	ENST00000582186.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000582455.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000581252.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000579208.1|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chr11_+_64059464_64059482	0.0872516	SOX3_SOX2	ENST00000394525.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr12_-_45307711_45307922	0.0871203	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr16_+_57653989_57654022	0.0870159	SOX3_SOX2	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr12_+_56477093_56477110	0.0870112	SOX3_SOX2	ENST00000549672.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000415288.2|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr20_+_44036620_44036658	0.0865993	SOX3_SOX2	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr12_-_18243119_18243133	0.0861448	SOX3_SOX2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr3_+_134514093_134514169	0.0861182	SOX3_SOX2	ENST00000398015.3|EPHB1|ENSG00000154928.12|EPH receptor B1
hg19_v2_chr14_+_23305760_23305781	0.0860127	SOX3_SOX2	ENST00000311852.6|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr22_+_19701985_19702063	0.0859707	SOX3_SOX2	ENST00000455784.2|SEPT5|ENSG00000184702.13|septin 5 	ENST00000406395.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr12_-_122240792_122240858	0.085861	SOX3_SOX2	ENST00000545885.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000542933.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000541657.1|RHOF|ENSG00000139725.3|ras homolog family member F (in filopodia) 	ENST00000428029.2|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000541694.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000536662.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000535643.1|AC084018.1|ENSG00000212694.4|AC084018.1
hg19_v2_chr13_-_25745857_25745886	0.0858525	SOX3_SOX2	ENST00000381853.3|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chr10_-_127371675_127371716	0.085759	SOX3_SOX2	ENST00000532135.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000526819.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000368821.3|TEX36|ENSG00000175018.8|testis expressed 36
hg19_v2_chr2_+_61293021_61293093	0.085676	SOX3_SOX2	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr11_+_369804_369804	0.0856563	SOX3_SOX2	ENST00000329962.6|B4GALNT4|ENSG00000182272.7|beta-1,4-N-acetyl-galactosaminyl transferase 4
hg19_v2_chr7_+_44836276_44836283	0.0856052	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr16_-_15736881_15736928	0.0850487	SOX3_SOX2	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr12_-_8815404_8815438	0.0849866	SOX3_SOX2	ENST00000359478.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000396549.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr11_+_46402744_46402777	0.0847309	SOX3_SOX2	ENST00000533952.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr3_-_124839648_124839709	0.0844139	SOX3_SOX2	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr2_-_70475701_70475717	0.0843566	SOX3_SOX2	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr5_+_55033845_55033870	0.0841327	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr14_-_106322288_106322325	0.0832678	SOX3_SOX2	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr17_-_74287333_74287333	0.0832065	SOX3_SOX2	ENST00000447564.2|QRICH2|ENSG00000129646.9|glutamine rich 2
hg19_v2_chr15_+_85144217_85144281	0.0831553	SOX3_SOX2	ENST00000540936.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000448803.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546275.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546148.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000442073.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000334141.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000358472.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000502939.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000379358.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000327179.6|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2
hg19_v2_chr7_+_87563458_87563489	0.0830142	SOX3_SOX2	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr2_+_176964458_176964540	0.0825098	SOX3_SOX2	ENST00000406506.2|HOXD12|ENSG00000170178.5|homeobox D12 	ENST00000404162.2|HOXD12|ENSG00000170178.5|homeobox D12
hg19_v2_chr10_+_45455207_45455279	0.0824673	SOX3_SOX2	ENST00000334940.6|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000374417.2|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000340258.5|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000427758.1|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4
hg19_v2_chr1_-_157670528_157670568	0.0823746	SOX3_SOX2	ENST00000368186.5|FCRL3|ENSG00000160856.16|Fc receptor-like 3 	ENST00000496769.1|FCRL3|ENSG00000160856.16|Fc receptor-like 3
hg19_v2_chr18_+_21719018_21719061	0.0823145	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr2_+_14772810_14772853	0.0822656	SOX3_SOX2	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr2_-_224467093_224467221	0.0820619	SOX3_SOX2	ENST00000305409.2|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr17_-_14683517_14683523	0.0818616	SOX3_SOX2	ENST00000379640.1|AC005863.1|ENSG00000205325.1|AC005863.1
hg19_v2_chr7_-_142207004_142207033	0.0818535	SOX3_SOX2	ENST00000426318.2|TRBV10-2|ENSG00000229769.2|T cell receptor beta variable 10-2
hg19_v2_chr2_+_177025619_177025619	0.081604	SOX3_SOX2	ENST00000410016.1|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr21_+_17791648_17791775	0.0814667	SOX3_SOX2	ENST00000602892.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000418813.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000435697.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr9_-_98079965_98080008	0.0809291	SOX3_SOX2	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr1_-_8086343_8086378	0.0806381	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr14_+_23340822_23341004	0.0800615	SOX3_SOX2	ENST00000359591.4|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr12_+_133613937_133613994	0.0797104	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr5_+_140480083_140480234	0.0794553	SOX3_SOX2	ENST00000231130.2|PCDHB3|ENSG00000113205.2|protocadherin beta 3
hg19_v2_chr15_+_69373184_69373202	0.0792557	SOX3_SOX2	ENST00000558147.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000440444.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277
hg19_v2_chr19_+_49468558_49468567	0.0791629	SOX3_SOX2	ENST00000331825.6|FTL|ENSG00000087086.9|ferritin, light polypeptide
hg19_v2_chr3_-_57233966_57234014	0.0790225	SOX3_SOX2	ENST00000473921.1|HESX1|ENSG00000163666.4|HESX homeobox 1 	ENST00000295934.3|HESX1|ENSG00000163666.4|HESX homeobox 1
hg19_v2_chr15_+_25200074_25200105	0.0787572	SOX3_SOX2	ENST00000390687.4|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000584968.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000346403.6|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000554227.2|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N
hg19_v2_chr2_+_181845843_181845859	0.0787261	SOX3_SOX2	ENST00000602710.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr5_-_118324200_118324254	0.0786573	SOX3_SOX2	ENST00000515439.3|DTWD2|ENSG00000169570.5|DTW domain containing 2 	ENST00000510708.1|DTWD2|ENSG00000169570.5|DTW domain containing 2
hg19_v2_chr13_-_38443860_38443939	0.0785548	SOX3_SOX2	ENST00000426868.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379681.3|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000338947.5|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000355779.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000358477.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379673.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4
hg19_v2_chr11_-_58612168_58612257	0.0782763	SOX3_SOX2	ENST00000287275.1|GLYATL2|ENSG00000156689.2|glycine-N-acyltransferase-like 2
hg19_v2_chr4_+_114214125_114214151	0.0782129	SOX3_SOX2	ENST00000509550.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr11_+_60997055_60997055	0.0778667	SOX3_SOX2	ENST00000544899.1|PGA4|ENSG00000229183.4|pepsinogen 4, group I (pepsinogen A)
hg19_v2_chr8_-_38326119_38326134	0.0774054	SOX3_SOX2	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr12_+_133657461_133657529	0.0773157	SOX3_SOX2	ENST00000412146.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000544426.1|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440984.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000319849.3|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440550.2|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr1_-_153066998_153067008	0.077001	SOX3_SOX2	ENST00000368750.3|SPRR2E|ENSG00000203785.4|small proline-rich protein 2E
hg19_v2_chr16_-_71918033_71918107	0.0768699	SOX3_SOX2	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr21_+_17909594_17909663	0.0766037	SOX3_SOX2	ENST00000441820.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602280.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr4_+_113970772_113970885	0.0765415	SOX3_SOX2	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr3_+_159557637_159557650	0.0763923	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr12_-_54779511_54779577	0.0763816	SOX3_SOX2	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr7_+_116660246_116660336	0.0762726	SOX3_SOX2	ENST00000434836.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393443.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000465133.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000477742.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393447.4|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393444.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr19_-_44124019_44124030	0.0762417	SOX3_SOX2	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr5_-_137514333_137514367	0.0762342	SOX3_SOX2	ENST00000411594.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000430331.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr18_-_53253323_53253359	0.0759524	SOX3_SOX2	ENST00000540999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000563888.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr15_+_25200108_25200161	0.0758814	SOX3_SOX2	ENST00000577949.1|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000338094.6|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000579070.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000577565.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000338327.4|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein
hg19_v2_chr6_+_31620191_31620238	0.0758756	SOX3_SOX2	ENST00000375918.2|APOM|ENSG00000204444.6|apolipoprotein M 	ENST00000375920.4|APOM|ENSG00000204444.6|apolipoprotein M
hg19_v2_chr16_+_30934376_30934392	0.0757884	SOX3_SOX2	ENST00000562798.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19 	ENST00000471231.2|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr19_+_9473676_9473712	0.0756563	SOX3_SOX2	ENST00000343499.4|ZNF177|ENSG00000188629.7|zinc finger protein 177 	ENST00000592912.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr6_-_91006627_91006641	0.075518	SOX3_SOX2	ENST00000537989.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr12_-_50790267_50790405	0.0754707	SOX3_SOX2	ENST00000327337.5|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A 	ENST00000543111.1|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A
hg19_v2_chr2_+_65283529_65283599	0.0753937	SOX3_SOX2	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr14_-_82089405_82089428	0.0752852	SOX3_SOX2	ENST00000554211.1|RP11-799P8.1|ENSG00000258977.1|RP11-799P8.1
hg19_v2_chr20_-_3996165_3996245	0.0749738	SOX3_SOX2	ENST00000545616.2|RNF24|ENSG00000101236.12|ring finger protein 24 	ENST00000358395.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr9_+_117904097_117904097	0.0749577	SOX3_SOX2	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr7_+_112262421_112262447	0.0747325	SOX3_SOX2	ENST00000453459.1|AC002463.3|ENSG00000223646.1|AC002463.3
hg19_v2_chr19_+_1105110_1105259	0.0744565	SOX3_SOX2	ENST00000587648.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chr17_+_63133587_63133627	0.0742661	SOX3_SOX2	ENST00000449996.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9 	ENST00000262406.9|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr3_+_100211412_100211504	0.0741455	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr5_+_49962772_49962815	0.073978	SOX3_SOX2	ENST00000281631.5|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000513738.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503665.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000514067.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503046.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr18_-_53253112_53253199	0.0735203	SOX3_SOX2	ENST00000568673.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562847.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000568147.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr4_-_109090106_109090124	0.0734728	SOX3_SOX2	ENST00000379951.2|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr14_+_22433675_22433680	0.0733015	SOX3_SOX2	ENST00000390442.3|TRAV12-3|ENSG00000211794.3|T cell receptor alpha variable 12-3
hg19_v2_chr6_+_35704855_35704874	0.0731352	SOX3_SOX2	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr22_-_27014043_27014073	0.0731263	SOX3_SOX2	ENST00000215939.2|CRYBB1|ENSG00000100122.5|crystallin, beta B1
hg19_v2_chr12_+_4829507_4829601	0.073065	SOX3_SOX2	ENST00000252318.2|GALNT8|ENSG00000130035.2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)
hg19_v2_chr1_+_214161854_214161892	0.0728877	SOX3_SOX2	ENST00000435016.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr20_-_25566153_25566211	0.0726147	SOX3_SOX2	ENST00000278886.6|NINL|ENSG00000101004.10|ninein-like 	ENST00000422516.1|NINL|ENSG00000101004.10|ninein-like
hg19_v2_chr1_-_79472365_79472443	0.0724025	SOX3_SOX2	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr2_+_27071045_27071157	0.0723715	SOX3_SOX2	ENST00000401478.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr3_-_65583561_65583610	0.0722659	SOX3_SOX2	ENST00000460329.2|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr11_+_76494253_76494317	0.0722333	SOX3_SOX2	ENST00000333090.4|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr17_-_39661849_39661871	0.07211	SOX3_SOX2	ENST00000246635.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000336861.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587544.1|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587435.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr14_+_22782867_22782922	0.0720618	SOX3_SOX2	ENST00000390467.3|TRAV40|ENSG00000211819.3|T cell receptor alpha variable 40
hg19_v2_chr8_-_8243968_8244008	0.0716836	SOX3_SOX2	ENST00000520004.1|SGK223|ENSG00000182319.5|Tyrosine-protein kinase SgK223
hg19_v2_chr1_-_169555779_169555826	0.0715995	SOX3_SOX2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr2_+_169923504_169923545	0.0714933	SOX3_SOX2	ENST00000357546.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr3_+_37440653_37440653	0.0714631	SOX3_SOX2	ENST00000328376.5|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35 	ENST00000452017.2|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35
hg19_v2_chr2_-_190649082_190649102	0.071186	SOX3_SOX2	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr12_+_133613878_133613924	0.0710001	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr10_+_22605304_22605372	0.070675	SOX3_SOX2	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr3_-_149688655_149688737	0.0706053	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr11_-_82708435_82708472	0.0705669	SOX3_SOX2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr18_-_28682374_28682415	0.0704122	SOX3_SOX2	ENST00000280904.6|DSC2|ENSG00000134755.10|desmocollin 2
hg19_v2_chr6_+_35704804_35704813	0.0703329	SOX3_SOX2	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr12_+_48722763_48722763	0.0701287	SOX3_SOX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr1_-_184006829_184006911	0.070065	SOX3_SOX2	ENST00000361927.4|COLGALT2|ENSG00000198756.6|collagen beta(1-O)galactosyltransferase 2
hg19_v2_chrX_-_2847366_2847394	0.0700312	SOX3_SOX2	ENST00000381154.1|ARSD|ENSG00000006756.11|arylsulfatase D
hg19_v2_chr17_-_62050278_62050278	0.0699575	SOX3_SOX2	ENST00000578147.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit 	ENST00000435607.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit
hg19_v2_chr3_-_129407535_129407575	0.0698767	SOX3_SOX2	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr4_+_25915822_25915893	0.069856	SOX3_SOX2	ENST00000506197.2|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr5_+_95187934_95187939	0.0697904	SOX3_SOX2	ENST00000357880.3|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27 	ENST00000436592.1|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27
hg19_v2_chr1_-_46598284_46598356	0.0696598	SOX3_SOX2	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr9_-_115818951_115819011	0.0695013	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr4_+_25915896_25915931	0.0694018	SOX3_SOX2	ENST00000514384.1|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr5_-_137514288_137514331	0.069015	SOX3_SOX2	ENST00000454473.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000418329.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000455658.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000230901.5|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000402931.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr9_+_82187630_82187722	0.0690091	SOX3_SOX2	ENST00000265284.6|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr18_-_53089723_53089786	0.0689991	SOX3_SOX2	ENST00000561992.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562512.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr16_+_70207686_70208060	0.0688931	SOX3_SOX2	ENST00000541793.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000314151.8|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000565806.1|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000569347.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000536907.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C
hg19_v2_chr3_-_141747950_141748004	0.0688209	SOX3_SOX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr5_-_14871866_14871916	0.068814	SOX3_SOX2	ENST00000284268.6|ANKH|ENSG00000154122.8|ANKH inorganic pyrophosphate transport regulator
hg19_v2_chr8_+_79428539_79428606	0.0687748	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr1_+_87012753_87012767	0.0687738	SOX3_SOX2	ENST00000370563.3|CLCA4|ENSG00000016602.8|chloride channel accessory 4
hg19_v2_chr8_+_134125727_134125747	0.0687214	SOX3_SOX2	ENST00000521107.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr3_-_120170052_120170100	0.0684516	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr21_+_17792672_17792775	0.0682339	SOX3_SOX2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr21_+_38445539_38445596	0.0681945	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr11_+_60691924_60691966	0.0679867	SOX3_SOX2	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr17_+_43238061_43238097	0.0679843	SOX3_SOX2	ENST00000307275.3|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000585340.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chrX_-_128788914_128788942	0.0678991	SOX3_SOX2	ENST00000429967.1|APLN|ENSG00000171388.9|apelin 	ENST00000307484.6|APLN|ENSG00000171388.9|apelin
hg19_v2_chr10_-_106240032_106240047	0.0678633	SOX3_SOX2	ENST00000447860.1|RP11-127O4.3|ENSG00000225768.1|RP11-127O4.3
hg19_v2_chr1_+_50569575_50569586	0.0678604	SOX3_SOX2	ENST00000371827.1|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr12_+_70760056_70760085	0.0677261	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr11_+_46402583_46402669	0.067638	SOX3_SOX2	ENST00000359803.3|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr11_+_65339820_65340051	0.0675624	SOX3_SOX2	ENST00000316409.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000449319.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000530349.1|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B
hg19_v2_chr17_-_39743139_39743173	0.0675557	SOX3_SOX2	ENST00000167586.6|KRT14|ENSG00000186847.5|keratin 14
hg19_v2_chr2_-_70475730_70475798	0.0674689	SOX3_SOX2	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr16_-_11367452_11367491	0.0674463	SOX3_SOX2	ENST00000327157.2|PRM3|ENSG00000178257.2|protamine 3
hg19_v2_chr7_+_29234101_29234130	0.067309	SOX3_SOX2	ENST00000435288.2|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr6_-_43478239_43478424	0.0673065	SOX3_SOX2	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr6_+_80341000_80341025	0.0672832	SOX3_SOX2	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chr11_+_65265141_65265306	0.0672675	SOX3_SOX2	ENST00000534336.1|MALAT1|ENSG00000251562.3|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
hg19_v2_chr3_+_69985792_69985874	0.06715	SOX3_SOX2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr16_+_69984810_69984889	0.0671311	SOX3_SOX2	ENST00000393701.2|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A 	ENST00000568461.1|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A
hg19_v2_chr12_-_10875831_10876025	0.0670615	SOX3_SOX2	ENST00000279550.7|YBX3|ENSG00000060138.8|Y box binding protein 3 	ENST00000228251.4|YBX3|ENSG00000060138.8|Y box binding protein 3
hg19_v2_chr2_+_65283506_65283527	0.0669582	SOX3_SOX2	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr12_-_50294033_50294044	0.0669566	SOX3_SOX2	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr2_-_26205340_26205381	0.066932	SOX3_SOX2	ENST00000264712.3|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr22_-_30970560_30970577	0.066856	SOX3_SOX2	ENST00000402369.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000406361.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr4_-_76928641_76928668	0.0667035	SOX3_SOX2	ENST00000264888.5|CXCL9|ENSG00000138755.5|chemokine (C-X-C motif) ligand 9
hg19_v2_chr11_-_66445219_66445392	0.066511	SOX3_SOX2	ENST00000525754.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531969.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000524637.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531036.2|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000310046.4|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B
hg19_v2_chr8_+_68864330_68864361	0.0664009	SOX3_SOX2	ENST00000288368.4|PREX2|ENSG00000046889.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
hg19_v2_chr19_+_36266417_36266427	0.0663925	SOX3_SOX2	ENST00000378944.5|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33 	ENST00000007510.4|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33
hg19_v2_chr8_-_27469196_27469294	0.0663043	SOX3_SOX2	ENST00000546343.1|CLU|ENSG00000120885.15|clusterin 	ENST00000560566.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr17_-_53046058_53046146	0.066234	SOX3_SOX2	ENST00000571584.1|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast) 	ENST00000299335.3|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast)
hg19_v2_chr2_+_242127924_242128117	0.0661114	SOX3_SOX2	ENST00000402530.3|ANO7|ENSG00000146205.9|anoctamin 7 	ENST00000274979.8|ANO7|ENSG00000146205.9|anoctamin 7 	ENST00000402430.3|ANO7|ENSG00000146205.9|anoctamin 7
hg19_v2_chr2_+_181845074_181845118	0.0658567	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr8_+_87878640_87878673	0.065819	SOX3_SOX2	ENST00000518476.1|CNBD1|ENSG00000176571.7|cyclic nucleotide binding domain containing 1
hg19_v2_chr8_+_62200509_62200590	0.0656748	SOX3_SOX2	ENST00000519846.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000518592.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000325897.4|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr2_+_131513864_131513922	0.0655906	SOX3_SOX2	ENST00000458606.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3 	ENST00000423981.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
hg19_v2_chr19_+_12949251_12949370	0.0655749	SOX3_SOX2	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr17_+_68100989_68101026	0.0654909	SOX3_SOX2	ENST00000585558.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392670.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr17_+_57232690_57232860	0.0653073	SOX3_SOX2	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr1_-_28520447_28520453	0.0650072	SOX3_SOX2	ENST00000539896.1|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr1_+_151682909_151682909	0.0648751	SOX3_SOX2	ENST00000326413.3|RIIAD1|ENSG00000178796.8|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 	ENST00000442233.2|AL589765.1|ENSG00000240510.2|Uncharacterized protein; cDNA FLJ36032 fis, clone TESTI2017069
hg19_v2_chr12_+_54378923_54378970	0.0645592	SOX3_SOX2	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr5_+_85913721_85913790	0.0644966	SOX3_SOX2	ENST00000247655.3|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000509578.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000515763.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc
hg19_v2_chr8_+_126442563_126442624	0.0644642	SOX3_SOX2	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr16_+_20499024_20499024	0.0641673	SOX3_SOX2	ENST00000593357.1|AC137056.1|ENSG00000267824.1|Uncharacterized protein; cDNA FLJ34659 fis, clone KIDNE2018863
hg19_v2_chrX_+_44732757_44732860	0.064142	SOX3_SOX2	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr12_-_67072714_67072925	0.0641193	SOX3_SOX2	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr5_+_140749803_140749831	0.0639193	SOX3_SOX2	ENST00000576222.1|PCDHGB3|ENSG00000262209.1|protocadherin gamma subfamily B, 3
hg19_v2_chr16_-_4852915_4852951	0.0636547	SOX3_SOX2	ENST00000322048.7|ROGDI|ENSG00000067836.8|rogdi homolog (Drosophila)
hg19_v2_chr3_-_49466686_49466764	0.063586	SOX3_SOX2	ENST00000273598.3|NICN1|ENSG00000145029.7|nicolin 1 	ENST00000436744.2|NICN1|ENSG00000145029.7|nicolin 1
hg19_v2_chr12_-_1703331_1703377	0.0635675	SOX3_SOX2	ENST00000339235.3|FBXL14|ENSG00000171823.6|F-box and leucine-rich repeat protein 14
hg19_v2_chr3_-_155011483_155011564	0.0634815	SOX3_SOX2	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr16_+_53242350_53242398	0.0634549	SOX3_SOX2	ENST00000565442.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr10_+_102222798_102222798	0.0633918	SOX3_SOX2	ENST00000343737.5|WNT8B|ENSG00000075290.7|wingless-type MMTV integration site family, member 8B
hg19_v2_chr3_-_11685345_11685432	0.0632828	SOX3_SOX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr7_+_111846643_111846704	0.0632232	SOX3_SOX2	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr8_-_145688231_145688261	0.0632219	SOX3_SOX2	ENST00000530374.1|CYHR1|ENSG00000187954.8|cysteine/histidine-rich 1
hg19_v2_chr6_+_83777374_83777456	0.0631353	SOX3_SOX2	ENST00000349129.2|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000237163.5|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000536812.1|DOPEY1|ENSG00000083097.10|dopey family member 1
hg19_v2_chrX_-_13956737_13956808	0.0629319	SOX3_SOX2	ENST00000454189.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr12_-_58026920_58026993	0.0626618	SOX3_SOX2	ENST00000550764.1|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1 	ENST00000551220.1|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
hg19_v2_chr1_+_202385953_202385994	0.0626249	SOX3_SOX2	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr11_+_118478313_118478358	0.0625844	SOX3_SOX2	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr14_+_91580357_91580454	0.0624989	SOX3_SOX2	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr3_+_16926441_16926463	0.0624373	SOX3_SOX2	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr8_-_27468945_27468948	0.0623673	SOX3_SOX2	ENST00000405140.3|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr4_-_57687847_57687911	0.062336	SOX3_SOX2	ENST00000504762.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000248701.4|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000506738.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)
hg19_v2_chr14_+_77228532_77228672	0.0622757	SOX3_SOX2	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr16_-_11375179_11375207	0.0622205	SOX3_SOX2	ENST00000312511.3|PRM1|ENSG00000175646.3|protamine 1
hg19_v2_chr2_-_86564776_86564813	0.0619082	SOX3_SOX2	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr11_-_76155618_76155676	0.0618859	SOX3_SOX2	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr3_+_46538981_46538981	0.0618496	SOX3_SOX2	ENST00000296142.3|RTP3|ENSG00000163825.3|receptor (chemosensory) transporter protein 3
hg19_v2_chr19_+_36266433_36266490	0.0618323	SOX3_SOX2	ENST00000314737.5|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33
hg19_v2_chr9_+_90112741_90112761	0.0616052	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chrX_+_105937068_105937091	0.0614761	SOX3_SOX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr7_-_100061869_100061900	0.0613069	SOX3_SOX2	ENST00000332375.3|C7orf61|ENSG00000185955.4|chromosome 7 open reading frame 61
hg19_v2_chr12_+_41831485_41831555	0.0612127	SOX3_SOX2	ENST00000539469.2|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4 	ENST00000298919.7|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4
hg19_v2_chr8_-_97247759_97247862	0.0611386	SOX3_SOX2	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr12_-_121734489_121734564	0.060975	SOX3_SOX2	ENST00000412367.2|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta 	ENST00000402834.4|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta 	ENST00000404169.3|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
hg19_v2_chr19_+_50194360_50194410	0.0609581	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chr10_-_105845674_105845760	0.0609442	SOX3_SOX2	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chrX_-_119603138_119603220	0.0608247	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr10_+_22605374_22605387	0.0607644	SOX3_SOX2	ENST00000448361.1|COMMD3|ENSG00000148444.11|COMM domain containing 3
hg19_v2_chr7_+_111846741_111846776	0.0606619	SOX3_SOX2	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr2_+_168725458_168725458	0.0606439	SOX3_SOX2	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr6_+_37787704_37787718	0.0605986	SOX3_SOX2	ENST00000474522.1|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr12_-_11150474_11150474	0.0605927	SOX3_SOX2	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chr12_-_55028664_55028679	0.0605316	SOX3_SOX2	ENST00000547511.1|LACRT|ENSG00000135413.4|lacritin 	ENST00000257867.4|LACRT|ENSG00000135413.4|lacritin
hg19_v2_chr12_-_105478339_105478361	0.0603534	SOX3_SOX2	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr11_-_44971702_44971759	0.0602882	SOX3_SOX2	ENST00000533940.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11 	ENST00000533937.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11
hg19_v2_chr10_+_23217006_23217018	0.0602485	SOX3_SOX2	ENST00000376528.4|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000447081.1|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr13_+_25946201_25946215	0.0601688	SOX3_SOX2	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr20_-_62610982_62611008	0.0596128	SOX3_SOX2	ENST00000369886.3|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10 	ENST00000450107.1|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10
hg19_v2_chr4_+_118955500_118955612	0.0595711	SOX3_SOX2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr16_+_21610879_21610974	0.0593498	SOX3_SOX2	ENST00000396014.4|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chrX_+_135251835_135251887	0.0592724	SOX3_SOX2	ENST00000456445.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr5_+_140430979_140430979	0.0592506	SOX3_SOX2	ENST00000306549.3|PCDHB1|ENSG00000171815.3|protocadherin beta 1
hg19_v2_chr12_-_10151773_10151899	0.05925	SOX3_SOX2	ENST00000298527.6|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B 	ENST00000348658.4|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B
hg19_v2_chr1_+_11539204_11539295	0.0592123	SOX3_SOX2	ENST00000294484.6|PTCHD2|ENSG00000204624.6|patched domain containing 2 	ENST00000389575.3|PTCHD2|ENSG00000204624.6|patched domain containing 2
hg19_v2_chr9_+_116263639_116263707	0.0591179	SOX3_SOX2	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr19_+_15852203_15852203	0.0589405	SOX3_SOX2	ENST00000305892.1|OR10H3|ENSG00000171936.1|olfactory receptor, family 10, subfamily H, member 3
hg19_v2_chr16_-_18887627_18887627	0.0589245	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr4_+_164265035_164265091	0.0588813	SOX3_SOX2	ENST00000338566.3|NPY5R|ENSG00000164129.7|neuropeptide Y receptor Y5
hg19_v2_chr17_-_38804061_38804112	0.0587726	SOX3_SOX2	ENST00000474246.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000377808.4|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000578044.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580419.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000400122.3|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580654.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000577721.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000478349.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000431889.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
hg19_v2_chr4_-_40859132_40859209	0.0586764	SOX3_SOX2	ENST00000543538.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000502841.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000504305.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000513516.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000510670.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2
hg19_v2_chr8_+_59323823_59323947	0.0586198	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr12_-_49076002_49076043	0.0584908	SOX3_SOX2	ENST00000357861.3|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550347.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000420613.2|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550931.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550870.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr9_+_82187487_82187557	0.0584832	SOX3_SOX2	ENST00000435650.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000414465.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376537.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376534.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr7_+_95401877_95401948	0.0584403	SOX3_SOX2	ENST00000524053.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000324972.6|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000537881.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000437599.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000359388.4|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000413338.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chr19_-_57967854_57967854	0.058285	SOX3_SOX2	ENST00000321039.3|VN1R1|ENSG00000178201.3|vomeronasal 1 receptor 1
hg19_v2_chr9_-_35563896_35563911	0.0582557	SOX3_SOX2	ENST00000399742.2|FAM166B|ENSG00000215187.5|family with sequence similarity 166, member B
hg19_v2_chr11_+_196738_196779	0.058254	SOX3_SOX2	ENST00000325113.4|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3 	ENST00000342593.5|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3
hg19_v2_chr10_+_23216944_23217002	0.0580158	SOX3_SOX2	ENST00000298032.5|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000409983.3|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000409049.3|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr7_+_55980331_55980331	0.0579957	SOX3_SOX2	ENST00000429591.2|ZNF713|ENSG00000178665.10|zinc finger protein 713
hg19_v2_chr2_-_233352531_233352550	0.0578881	SOX3_SOX2	ENST00000304546.1|ECEL1|ENSG00000171551.7|endothelin converting enzyme-like 1
hg19_v2_chrX_+_135251783_135251813	0.0578829	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr3_-_66024213_66024238	0.0578568	SOX3_SOX2	ENST00000483466.1|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr4_+_144303093_144303132	0.0578303	SOX3_SOX2	ENST00000505913.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chrX_+_155227246_155227335	0.0577533	SOX3_SOX2	ENST00000244174.5|IL9R|ENSG00000124334.12|interleukin 9 receptor 	ENST00000424344.3|IL9R|ENSG00000124334.12|interleukin 9 receptor
hg19_v2_chr16_+_16434185_16434185	0.0575327	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr4_+_156680153_156680242	0.0573451	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr7_+_102553430_102553456	0.0572976	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr7_-_41742697_41742714	0.0571336	SOX3_SOX2	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr6_-_139695757_139695795	0.0570941	SOX3_SOX2	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr12_-_71551868_71551882	0.0567624	SOX3_SOX2	ENST00000247829.3|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr5_+_138677515_138677581	0.0566782	SOX3_SOX2	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr19_+_8455077_8455083	0.0564723	SOX3_SOX2	ENST00000328024.6|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr11_-_108422926_108422937	0.0564356	SOX3_SOX2	ENST00000428840.1|EXPH5|ENSG00000110723.7|exophilin 5 	ENST00000526312.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr1_-_182642017_182642049	0.0564031	SOX3_SOX2	ENST00000367557.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8 	ENST00000258302.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr11_+_66045634_66045710	0.0561934	SOX3_SOX2	ENST00000528852.1|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2 	ENST00000311445.6|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2
hg19_v2_chr7_+_106505696_106505798	0.0561777	SOX3_SOX2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr12_+_32260085_32260268	0.0560992	SOX3_SOX2	ENST00000548411.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000281474.5|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000551086.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila)
hg19_v2_chr12_-_92539614_92539673	0.0560981	SOX3_SOX2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr7_+_99613212_99613236	0.056051	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr9_+_116263778_116263793	0.055989	SOX3_SOX2	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr1_+_65886326_65886406	0.0558536	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr3_-_195310802_195310818	0.0558132	SOX3_SOX2	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr5_+_175792459_175792513	0.0557664	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr19_+_39904168_39904468	0.0557368	SOX3_SOX2	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr19_+_56989485_56989565	0.0555486	SOX3_SOX2	ENST00000585445.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000586091.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000594783.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000592146.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000588158.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000299997.4|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000591797.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr12_-_8803128_8803164	0.055445	SOX3_SOX2	ENST00000543467.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr1_+_93913665_93913705	0.0553775	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr2_+_127413677_127413703	0.0552813	SOX3_SOX2	ENST00000356887.7|GYPC|ENSG00000136732.10|glycophorin C (Gerbich blood group)
hg19_v2_chr8_-_86253888_86253944	0.0552407	SOX3_SOX2	ENST00000522389.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000432364.2|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517618.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr8_-_133123406_133123406	0.0551504	SOX3_SOX2	ENST00000434736.2|HHLA1|ENSG00000132297.7|HERV-H LTR-associating 1
hg19_v2_chr11_+_120971882_120971882	0.0549588	SOX3_SOX2	ENST00000392793.1|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr11_+_1411503_1411521	0.0549376	SOX3_SOX2	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr10_+_102759045_102759233	0.0549352	SOX3_SOX2	ENST00000370220.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr17_-_7145475_7145774	0.0548653	SOX3_SOX2	ENST00000571129.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000571253.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000573928.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr19_+_17326521_17326574	0.0546332	SOX3_SOX2	ENST00000593597.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr19_+_57791806_57791875	0.0544087	SOX3_SOX2	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr19_-_36247910_36247937	0.0543049	SOX3_SOX2	ENST00000587965.1|HSPB6|ENSG00000004776.7|heat shock protein, alpha-crystallin-related, B6 	ENST00000004982.3|HSPB6|ENSG00000004776.7|heat shock protein, alpha-crystallin-related, B6
hg19_v2_chr7_-_112727774_112727833	0.0542334	SOX3_SOX2	ENST00000297146.3|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000501255.2|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr16_+_28303804_28303864	0.0542098	SOX3_SOX2	ENST00000341901.4|SBK1|ENSG00000188322.4|SH3 domain binding kinase 1
hg19_v2_chr19_-_23578220_23578362	0.0541133	SOX3_SOX2	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr12_+_49372251_49372398	0.0537845	SOX3_SOX2	ENST00000293549.3|WNT1|ENSG00000125084.7|wingless-type MMTV integration site family, member 1
hg19_v2_chr8_-_80993010_80993073	0.0537636	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr1_-_173174681_173174702	0.0537247	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr2_+_54342533_54342547	0.0537171	SOX3_SOX2	ENST00000406041.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr17_+_33914276_33914386	0.0534027	SOX3_SOX2	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr9_-_39239171_39239171	0.0533211	SOX3_SOX2	ENST00000358144.2|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3
hg19_v2_chr2_-_178128528_178128574	0.053303	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr6_+_13925098_13925163	0.0530459	SOX3_SOX2	ENST00000488300.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000544682.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000420478.2|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr10_-_54531406_54531460	0.0529341	SOX3_SOX2	ENST00000373968.3|MBL2|ENSG00000165471.6|mannose-binding lectin (protein C) 2, soluble
hg19_v2_chr16_-_22385901_22385947	0.0529247	SOX3_SOX2	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr1_+_235490659_235490670	0.0528355	SOX3_SOX2	ENST00000488594.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr1_-_202858227_202858283	0.0527559	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chr17_+_27071002_27071103	0.0525888	SOX3_SOX2	ENST00000262395.5|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000422344.1|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000444415.3|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000262396.6|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4
hg19_v2_chrY_+_24636544_24636544	0.0525885	SOX3_SOX2	ENST00000303728.1|PRY|ENSG00000169789.6|PTPN13-like, Y-linked 	ENST00000338793.2|PRY|ENSG00000169789.6|PTPN13-like, Y-linked
hg19_v2_chr17_-_27278304_27278408	0.0525719	SOX3_SOX2	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr1_+_32084641_32084641	0.0523975	SOX3_SOX2	ENST00000373706.5|HCRTR1|ENSG00000121764.7|hypocretin (orexin) receptor 1
hg19_v2_chr22_+_42372764_42372868	0.052389	SOX3_SOX2	ENST00000396426.3|SEPT3|ENSG00000100167.15|septin 3 	ENST00000406029.1|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr20_+_34042962_34043028	0.052163	SOX3_SOX2	ENST00000446710.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa 	ENST00000420564.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa
hg19_v2_chr22_+_23165153_23165278	0.052128	SOX3_SOX2	ENST00000390317.2|IGLV2-8|ENSG00000211671.2|immunoglobulin lambda variable 2-8
hg19_v2_chr9_-_117880477_117880536	0.0521086	SOX3_SOX2	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr7_+_29234028_29234043	0.0520738	SOX3_SOX2	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr12_+_49212514_49212692	0.0519973	SOX3_SOX2	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr8_-_42623924_42623935	0.051963	SOX3_SOX2	ENST00000276410.2|CHRNA6|ENSG00000147434.4|cholinergic receptor, nicotinic, alpha 6 (neuronal)
hg19_v2_chr17_+_7323634_7323679	0.0519131	SOX3_SOX2	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr4_+_159593271_159593295	0.0518051	SOX3_SOX2	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr4_-_20985632_20985664	0.0516502	SOX3_SOX2	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr12_+_53443680_53443858	0.0515685	SOX3_SOX2	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr8_-_38326139_38326161	0.0514498	SOX3_SOX2	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr6_+_29364416_29364416	0.051441	SOX3_SOX2	ENST00000383555.2|OR12D2|ENSG00000168787.4|olfactory receptor, family 12, subfamily D, member 2 (gene/pseudogene)
hg19_v2_chr17_+_74864476_74864592	0.0513372	SOX3_SOX2	ENST00000301618.4|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 	ENST00000569840.2|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
hg19_v2_chr11_-_76155700_76155736	0.0512891	SOX3_SOX2	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr17_+_2240775_2240812	0.0512104	SOX3_SOX2	ENST00000268989.3|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2 	ENST00000426855.2|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr6_+_123100620_123100763	0.0512099	SOX3_SOX2	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr10_+_97759848_97759883	0.0511593	SOX3_SOX2	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr8_-_29940464_29940486	0.0511346	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr13_+_111767650_111767874	0.0509878	SOX3_SOX2	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr17_-_39296739_39296798	0.0509512	SOX3_SOX2	ENST00000345847.4|KRTAP4-6|ENSG00000198090.3|keratin associated protein 4-6
hg19_v2_chr19_-_44285401_44285446	0.0509171	SOX3_SOX2	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr9_-_120177216_120177341	0.0509134	SOX3_SOX2	ENST00000373996.3|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000313400.4|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000361477.3|ASTN2|ENSG00000148219.12|astrotactin 2
hg19_v2_chr20_-_4795747_4795769	0.0508792	SOX3_SOX2	ENST00000379376.2|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr1_-_11863171_11863302	0.0508164	SOX3_SOX2	ENST00000376592.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr1_-_153013588_153013605	0.0507829	SOX3_SOX2	ENST00000360379.3|SPRR2D|ENSG00000163216.6|small proline-rich protein 2D
hg19_v2_chr8_-_102218292_102218421	0.0506898	SOX3_SOX2	ENST00000518336.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000520454.1|ZNF706|ENSG00000120963.7|zinc finger protein 706
hg19_v2_chr15_-_74421477_74421619	0.0503747	SOX3_SOX2	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr5_+_140710061_140710252	0.0503387	SOX3_SOX2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr3_-_149688896_149688970	0.0503162	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chrX_+_89176881_89176955	0.050273	SOX3_SOX2	ENST00000283891.5|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked 	ENST00000561129.2|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked
hg19_v2_chr6_+_32811885_32811915	0.049834	SOX3_SOX2	ENST00000458296.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000413039.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000429600.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000412095.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000395330.1|PSMB9|ENSG00000240065.3|proteasome (prosome, macropain) subunit, beta type, 9 	ENST00000415067.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr5_-_157079372_157079395	0.0498174	SOX3_SOX2	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr14_+_91580732_91580746	0.049803	SOX3_SOX2	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr1_+_66458072_66458109	0.0496652	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr4_-_103266219_103266296	0.049627	SOX3_SOX2	ENST00000394833.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr13_+_32605437_32605473	0.0496085	SOX3_SOX2	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr7_+_116593292_116593409	0.0495999	SOX3_SOX2	ENST00000393446.2|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000265437.5|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393451.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr7_+_44788430_44788530	0.0495281	SOX3_SOX2	ENST00000457123.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2 	ENST00000309315.4|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr4_+_81118647_81118666	0.0495207	SOX3_SOX2	ENST00000415738.2|PRDM8|ENSG00000152784.11|PR domain containing 8
hg19_v2_chr6_+_56954867_56954882	0.0494633	SOX3_SOX2	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr8_+_86019382_86019487	0.0493887	SOX3_SOX2	ENST00000360375.3|LRRCC1|ENSG00000133739.11|leucine rich repeat and coiled-coil centrosomal protein 1
hg19_v2_chrX_+_100646190_100646266	0.0493332	SOX3_SOX2	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr2_+_113735575_113735606	0.0493307	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr16_-_19533404_19533467	0.0492161	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr12_+_53443963_53443970	0.049086	SOX3_SOX2	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr17_-_33760269_33760302	0.0490695	SOX3_SOX2	ENST00000452764.3|SLFN12|ENSG00000172123.8|schlafen family member 12
hg19_v2_chr2_-_231825668_231825781	0.0490599	SOX3_SOX2	ENST00000392039.2|GPR55|ENSG00000135898.5|G protein-coupled receptor 55
hg19_v2_chr16_+_68573116_68573228	0.0490135	SOX3_SOX2	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr7_+_77167343_77167369	0.0489485	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr8_+_110346546_110346619	0.048869	SOX3_SOX2	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chrX_-_69509738_69509829	0.0488384	SOX3_SOX2	ENST00000374454.1|PDZD11|ENSG00000120509.6|PDZ domain containing 11 	ENST00000239666.4|PDZD11|ENSG00000120509.6|PDZ domain containing 11
hg19_v2_chr1_-_231004220_231004399	0.0487233	SOX3_SOX2	ENST00000366663.5|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr1_-_37499726_37499850	0.0487102	SOX3_SOX2	ENST00000373091.3|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3 	ENST00000373093.4|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3
hg19_v2_chr20_-_45318230_45318418	0.0486802	SOX3_SOX2	ENST00000372114.3|TP53RK|ENSG00000172315.5|TP53 regulating kinase
hg19_v2_chr10_+_104535994_104536014	0.0486669	SOX3_SOX2	ENST00000369889.4|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr15_-_74043816_74043816	0.0485352	SOX3_SOX2	ENST00000379822.4|C15orf59|ENSG00000205363.4|chromosome 15 open reading frame 59
hg19_v2_chr15_+_85923797_85923844	0.0485323	SOX3_SOX2	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr5_+_135364584_135364691	0.0484339	SOX3_SOX2	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr5_+_140797296_140797427	0.0483692	SOX3_SOX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr16_+_21610797_21610850	0.0482003	SOX3_SOX2	ENST00000358154.3|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr1_-_114695537_114695602	0.0481465	SOX3_SOX2	ENST00000609117.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608879.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608203.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000609577.1|SYT6|ENSG00000134207.10|synaptotagmin VI
hg19_v2_chrX_-_17878827_17878846	0.0480951	SOX3_SOX2	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr12_-_5352315_5352324	0.0480926	SOX3_SOX2	ENST00000536518.1|RP11-319E16.1|ENSG00000256115.1|RP11-319E16.1
hg19_v2_chr8_-_38325219_38325418	0.0480795	SOX3_SOX2	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr17_-_56406117_56406165	0.0480417	SOX3_SOX2	ENST00000268893.6|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1 	ENST00000355701.3|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1
hg19_v2_chr5_+_140213815_140213969	0.0477132	SOX3_SOX2	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr5_-_157079428_157079452	0.0476894	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr9_+_44868935_44868935	0.0476473	SOX3_SOX2	ENST00000448436.2|RP11-160N1.10|ENSG00000204814.5|RP11-160N1.10
hg19_v2_chr2_-_228497888_228498036	0.0476379	SOX3_SOX2	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr16_+_8814563_8814603	0.0476136	SOX3_SOX2	ENST00000425191.2|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase 	ENST00000569156.1|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase
hg19_v2_chr22_-_46450024_46450110	0.0474244	SOX3_SOX2	ENST00000396008.2|C22orf26|ENSG00000182257.5|chromosome 22 open reading frame 26 	ENST00000333761.1|C22orf26|ENSG00000182257.5|chromosome 22 open reading frame 26
hg19_v2_chr2_-_208989225_208989255	0.0474192	SOX3_SOX2	ENST00000264376.4|CRYGD|ENSG00000118231.4|crystallin, gamma D
hg19_v2_chr4_-_87281196_87281219	0.047351	SOX3_SOX2	ENST00000359221.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr16_-_20556492_20556492	0.0472919	SOX3_SOX2	ENST00000568098.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr3_-_149688502_149688526	0.0472468	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr19_-_44123734_44123796	0.047219	SOX3_SOX2	ENST00000598676.1|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr3_-_112564797_112564797	0.0471923	SOX3_SOX2	ENST00000398214.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like 	ENST00000448932.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like
hg19_v2_chr11_+_111808119_111808151	0.0469506	SOX3_SOX2	ENST00000531396.1|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr7_+_99613195_99613206	0.0468525	SOX3_SOX2	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr6_+_46620705_46620732	0.0468119	SOX3_SOX2	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr5_-_110062349_110062380	0.0466344	SOX3_SOX2	ENST00000511883.2|TMEM232|ENSG00000186952.10|transmembrane protein 232 	ENST00000455884.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr5_-_110062384_110062450	0.046588	SOX3_SOX2	ENST00000429839.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr11_-_61129335_61129385	0.0465246	SOX3_SOX2	ENST00000545361.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3 	ENST00000539128.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3 	ENST00000546151.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3 	ENST00000447532.2|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chrX_+_37850026_37850070	0.046512	SOX3_SOX2	ENST00000341016.3|CXorf27|ENSG00000187516.5|chromosome X open reading frame 27
hg19_v2_chr7_-_107443652_107443675	0.0463654	SOX3_SOX2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr6_+_30594619_30594665	0.0463376	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr2_+_169923577_169923592	0.0462913	SOX3_SOX2	ENST00000432060.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr5_+_140571902_140571967	0.0462478	SOX3_SOX2	ENST00000239446.4|PCDHB10|ENSG00000120324.4|protocadherin beta 10
hg19_v2_chr14_+_105781048_105781101	0.0462228	SOX3_SOX2	ENST00000458164.2|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2 	ENST00000447393.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr10_+_114710211_114710229	0.0461854	SOX3_SOX2	ENST00000349937.2|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369397.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr5_-_115910091_115910141	0.0461113	SOX3_SOX2	ENST00000257414.8|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr14_-_21994525_21994634	0.0459494	SOX3_SOX2	ENST00000538754.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr12_-_11508520_11508686	0.0458946	SOX3_SOX2	ENST00000545626.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1 	ENST00000500254.2|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr15_-_81202118_81202118	0.0458434	SOX3_SOX2	ENST00000560560.1|RP11-351M8.1|ENSG00000259649.1|Uncharacterized protein
hg19_v2_chr15_-_38519066_38519111	0.0458157	SOX3_SOX2	ENST00000561320.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1	ENST00000561161.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1
hg19_v2_chr2_+_127413704_127413760	0.0457102	SOX3_SOX2	ENST00000409836.3|GYPC|ENSG00000136732.10|glycophorin C (Gerbich blood group)
hg19_v2_chr22_+_42372931_42372947	0.0453453	SOX3_SOX2	ENST00000328414.8|SEPT3|ENSG00000100167.15|septin 3 	ENST00000396425.3|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr12_-_69080590_69080644	0.0452545	SOX3_SOX2	ENST00000433116.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2	ENST00000500695.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2
hg19_v2_chr20_+_44036900_44036984	0.0452145	SOX3_SOX2	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr16_+_6533729_6533796	0.0451924	SOX3_SOX2	ENST00000551752.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr18_-_64271316_64271334	0.0451069	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr2_-_70475586_70475646	0.0450935	SOX3_SOX2	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr5_+_138678131_138678169	0.0449248	SOX3_SOX2	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr9_+_27524283_27524312	0.0448267	SOX3_SOX2	ENST00000276943.2|IFNK|ENSG00000147896.3|interferon, kappa
hg19_v2_chr16_-_89007491_89007608	0.0448121	SOX3_SOX2	ENST00000327483.5|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000564416.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr4_+_15683369_15683390	0.044719	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr14_-_88459503_88459615	0.0446596	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr6_-_161695042_161695064	0.0446486	SOX3_SOX2	ENST00000366908.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366911.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366905.3|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr13_+_76362974_76363015	0.0445699	SOX3_SOX2	ENST00000497947.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr11_-_236326_236431	0.0445178	SOX3_SOX2	ENST00000525237.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000532956.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000525319.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000524564.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000382743.4|SIRT3|ENSG00000142082.10|sirtuin 3
hg19_v2_chr14_+_63671105_63671126	0.0444037	SOX3_SOX2	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr19_-_5903714_5903809	0.0443896	SOX3_SOX2	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr2_+_71295733_71295752	0.0442091	SOX3_SOX2	ENST00000443938.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000244204.6|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr19_+_21203426_21203475	0.0440309	SOX3_SOX2	ENST00000261560.5|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000599548.1|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000594110.1|ZNF430|ENSG00000118620.8|zinc finger protein 430
hg19_v2_chr6_+_13925318_13925424	0.0439698	SOX3_SOX2	ENST00000423553.2|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000537388.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr2_+_220408724_220408789	0.0439311	SOX3_SOX2	ENST00000421791.1|TMEM198|ENSG00000188760.6|transmembrane protein 198 	ENST00000373883.3|TMEM198|ENSG00000188760.6|transmembrane protein 198 	ENST00000451952.1|TMEM198|ENSG00000188760.6|transmembrane protein 198
hg19_v2_chr1_+_28285973_28285973	0.0439163	SOX3_SOX2	ENST00000373884.5|XKR8|ENSG00000158156.7|XK, Kell blood group complex subunit-related family, member 8
hg19_v2_chr4_-_25865159_25865382	0.0437687	SOX3_SOX2	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr8_+_12803176_12803195	0.0435771	SOX3_SOX2	ENST00000524591.2|KIAA1456|ENSG00000250305.4|KIAA1456
hg19_v2_chr17_+_33914460_33914536	0.0435385	SOX3_SOX2	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr2_-_18770812_18770839	0.0434631	SOX3_SOX2	ENST00000359846.2|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000532967.1|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000444297.2|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000304081.4|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000600945.1|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB
hg19_v2_chr2_+_177028805_177028805	0.043446	SOX3_SOX2	ENST00000249440.3|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr3_+_112930306_112930338	0.0434231	SOX3_SOX2	ENST00000495514.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr6_-_28303901_28303975	0.0433862	SOX3_SOX2	ENST00000439158.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000446474.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000414431.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000344279.6|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000453745.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chrX_-_114252193_114252207	0.0433837	SOX3_SOX2	ENST00000243213.1|IL13RA2|ENSG00000123496.3|interleukin 13 receptor, alpha 2
hg19_v2_chr3_+_159570722_159570733	0.0433749	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr12_-_133707021_133707071	0.0433645	SOX3_SOX2	ENST00000537226.1|ZNF891|ENSG00000214029.3|zinc finger protein 891
hg19_v2_chr13_+_28527647_28527667	0.0432654	SOX3_SOX2	ENST00000567234.1|LINC00543|ENSG00000260704.1|long intergenic non-protein coding RNA 543
hg19_v2_chr14_+_105941118_105941196	0.043203	SOX3_SOX2	ENST00000550577.1|CRIP2|ENSG00000182809.6|cysteine-rich protein 2 	ENST00000538259.2|CRIP2|ENSG00000182809.6|cysteine-rich protein 2
hg19_v2_chr8_-_41754231_41754281	0.043107	SOX3_SOX2	ENST00000265709.8|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr19_+_17326141_17326178	0.0430788	SOX3_SOX2	ENST00000445667.2|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000263897.5|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr3_-_183735731_183735803	0.0430224	SOX3_SOX2	ENST00000334444.6|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr19_+_4279282_4279293	0.0430037	SOX3_SOX2	ENST00000599689.1|SHD|ENSG00000105251.6|Src homology 2 domain containing transforming protein D
hg19_v2_chr16_+_6069072_6069132	0.0428783	SOX3_SOX2	ENST00000547605.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000550418.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000553186.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr12_+_95611516_95611527	0.0428664	SOX3_SOX2	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr3_-_52486841_52486882	0.0428212	SOX3_SOX2	ENST00000496590.1|TNNC1|ENSG00000114854.3|troponin C type 1 (slow)
hg19_v2_chr3_+_9834758_9834801	0.0426052	SOX3_SOX2	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chr5_-_58882219_58882337	0.042567	SOX3_SOX2	ENST00000505453.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000360047.5|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chrX_+_135252050_135252085	0.0424305	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr19_-_7990991_7991059	0.0424136	SOX3_SOX2	ENST00000318978.4|CTXN1|ENSG00000178531.4|cortexin 1
hg19_v2_chrX_+_100645812_100646008	0.0423427	SOX3_SOX2	ENST00000427805.2|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000553110.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000392994.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000409338.1|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough 	ENST00000409170.3|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough
hg19_v2_chr14_+_71108460_71108508	0.0423301	SOX3_SOX2	ENST00000256367.2|TTC9|ENSG00000133985.2|tetratricopeptide repeat domain 9
hg19_v2_chr6_-_111888474_111888563	0.0423045	SOX3_SOX2	ENST00000368735.1|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr2_+_179316163_179316163	0.0422171	SOX3_SOX2	ENST00000409117.3|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chrX_+_46306624_46306709	0.0421157	SOX3_SOX2	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr5_+_111496631_111496703	0.0420821	SOX3_SOX2	ENST00000508590.1|EPB41L4A-AS1|ENSG00000224032.2|EPB41L4A antisense RNA 1
hg19_v2_chr1_-_17445930_17445954	0.0420296	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr17_+_15603447_15603447	0.0419644	SOX3_SOX2	ENST00000395893.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr8_+_145064215_145064232	0.0417986	SOX3_SOX2	ENST00000313269.5|GRINA|ENSG00000178719.12|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
hg19_v2_chr14_-_50583271_50583318	0.0417229	SOX3_SOX2	ENST00000395860.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase 	ENST00000395859.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase
hg19_v2_chr11_-_6817128_6817128	0.0416934	SOX3_SOX2	ENST00000332601.3|OR6A2|ENSG00000184933.3|olfactory receptor, family 6, subfamily A, member 2
hg19_v2_chr5_-_54281407_54281429	0.0416719	SOX3_SOX2	ENST00000381403.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr1_-_173176452_173176477	0.0416657	SOX3_SOX2	ENST00000281834.3|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr19_+_37960240_37960299	0.04162	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr11_-_35287243_35287292	0.0415873	SOX3_SOX2	ENST00000464522.2|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chrX_+_71401526_71401549	0.0415724	SOX3_SOX2	ENST00000218432.5|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000423432.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000373669.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr17_-_77924627_77924661	0.0413146	SOX3_SOX2	ENST00000572862.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000573782.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000574427.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000570373.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000340848.7|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000576768.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr10_-_104179682_104179717	0.0412799	SOX3_SOX2	ENST00000406432.1|PSD|ENSG00000059915.12|pleckstrin and Sec7 domain containing
hg19_v2_chr4_+_150999418_150999433	0.0412031	SOX3_SOX2	ENST00000296550.7|DCLK2|ENSG00000170390.10|doublecortin-like kinase 2
hg19_v2_chr1_+_50571949_50571964	0.0411682	SOX3_SOX2	ENST00000357083.4|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr7_-_6388537_6388611	0.0411427	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr11_+_32112431_32112454	0.0410559	SOX3_SOX2	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr17_+_77751931_77752014	0.0410246	SOX3_SOX2	ENST00000310942.4|CBX2|ENSG00000173894.6|chromobox homolog 2 	ENST00000269399.5|CBX2|ENSG00000173894.6|chromobox homolog 2
hg19_v2_chr8_-_42623747_42623755	0.0408592	SOX3_SOX2	ENST00000534622.1|CHRNA6|ENSG00000147434.4|cholinergic receptor, nicotinic, alpha 6 (neuronal)
hg19_v2_chr20_-_49547910_49547988	0.0408462	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr12_-_14133053_14133159	0.0408378	SOX3_SOX2	ENST00000609686.1|GRIN2B|ENSG00000273079.1|glutamate receptor, ionotropic, N-methyl D-aspartate 2B
hg19_v2_chr6_-_41254403_41254457	0.0407604	SOX3_SOX2	ENST00000589614.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000334475.6|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000591620.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000244709.4|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1
hg19_v2_chr11_-_105892937_105893130	0.040754	SOX3_SOX2	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr13_-_84456527_84456541	0.0407196	SOX3_SOX2	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr5_+_140753444_140753651	0.0406714	SOX3_SOX2	ENST00000517434.1|PCDHGA6|ENSG00000253731.1|protocadherin gamma subfamily A, 6
hg19_v2_chrX_-_110655306_110655330	0.040649	SOX3_SOX2	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr14_-_100772862_100772877	0.0406165	SOX3_SOX2	ENST00000359232.3|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chr2_+_11679963_11679986	0.0404654	SOX3_SOX2	ENST00000263834.5|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1
hg19_v2_chr2_-_204400013_204400058	0.0403777	SOX3_SOX2	ENST00000374489.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000374488.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000308091.4|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000453034.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000420371.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr4_-_53617798_53617813	0.0403603	SOX3_SOX2	ENST00000443173.1|ERVMER34-1|ENSG00000226887.3|endogenous retrovirus group MER34, member 1
hg19_v2_chr15_+_63335899_63336001	0.0402427	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr19_+_50354430_50354448	0.040134	SOX3_SOX2	ENST00000599732.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr3_+_113616317_113616364	0.0400968	SOX3_SOX2	ENST00000440446.2|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C 	ENST00000488680.1|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C
hg19_v2_chr1_-_200379129_200379174	0.0400822	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr7_+_6144514_6144614	0.0400426	SOX3_SOX2	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chr14_+_85996471_85996497	0.039974	SOX3_SOX2	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr19_+_50354462_50354482	0.0399045	SOX3_SOX2	ENST00000601675.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr3_-_184095923_184095953	0.0397061	SOX3_SOX2	ENST00000445696.2|THPO|ENSG00000090534.13|thrombopoietin 	ENST00000204615.7|THPO|ENSG00000090534.13|thrombopoietin
hg19_v2_chr1_+_33231268_33231284	0.0396955	SOX3_SOX2	ENST00000373480.1|KIAA1522|ENSG00000162522.6|KIAA1522
hg19_v2_chr6_-_84937314_84937372	0.0395747	SOX3_SOX2	ENST00000257766.4|KIAA1009|ENSG00000135315.7|KIAA1009 	ENST00000403245.3|KIAA1009|ENSG00000135315.7|KIAA1009
hg19_v2_chr7_+_50344289_50344378	0.0395674	SOX3_SOX2	ENST00000413698.1|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000359197.5|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000331340.3|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000357364.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000343574.5|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000349824.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000346667.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000440768.2|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros)
hg19_v2_chr8_+_26435359_26435426	0.0395476	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr16_-_67514982_67515140	0.0394499	SOX3_SOX2	ENST00000565835.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000540149.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000290949.3|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
hg19_v2_chr3_-_142682178_142682178	0.0394206	SOX3_SOX2	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr2_+_66662510_66662532	0.0393402	SOX3_SOX2	ENST00000272369.9|MEIS1|ENSG00000143995.15|Meis homeobox 1 	ENST00000407092.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr15_-_41166414_41166487	0.0392947	SOX3_SOX2	ENST00000220507.4|RHOV|ENSG00000104140.6|ras homolog family member V
hg19_v2_chr20_+_42086525_42086568	0.03928	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr2_-_74570520_74570547	0.0391849	SOX3_SOX2	ENST00000394019.2|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000346834.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000359484.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000423644.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000377634.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000436454.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5
hg19_v2_chr6_-_108145499_108145532	0.039166	SOX3_SOX2	ENST00000369020.3|SCML4|ENSG00000146285.9|sex comb on midleg-like 4 (Drosophila) 	ENST00000369022.2|SCML4|ENSG00000146285.9|sex comb on midleg-like 4 (Drosophila)
hg19_v2_chr1_+_171154347_171154389	0.0390568	SOX3_SOX2	ENST00000209929.7|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional) 	ENST00000441535.1|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional)
hg19_v2_chr3_+_130613226_130613485	0.0390486	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr20_+_62795827_62795878	0.0390046	SOX3_SOX2	ENST00000328439.1|MYT1|ENSG00000196132.7|myelin transcription factor 1 	ENST00000536311.1|MYT1|ENSG00000196132.7|myelin transcription factor 1
hg19_v2_chr17_+_36861735_36861795	0.0389371	SOX3_SOX2	ENST00000378137.5|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 	ENST00000325718.7|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr15_+_78730531_78730612	0.0386208	SOX3_SOX2	ENST00000258886.8|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr19_+_44100544_44100581	0.0385802	SOX3_SOX2	ENST00000391965.2|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000525771.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr7_-_142120321_142120369	0.0384609	SOX3_SOX2	ENST00000390377.1|TRBV7-7|ENSG00000253291.1|T cell receptor beta variable 7-7
hg19_v2_chr14_-_50698276_50698304	0.0382788	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr7_-_134143841_134143924	0.0382366	SOX3_SOX2	ENST00000285930.4|AKR1B1|ENSG00000085662.9|aldo-keto reductase family 1, member B1 (aldose reductase)
hg19_v2_chr14_-_105531759_105531782	0.0381942	SOX3_SOX2	ENST00000329797.3|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000539291.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000392585.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132
hg19_v2_chr19_+_57791419_57791436	0.0380734	SOX3_SOX2	ENST00000537645.1|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr5_+_180326145_180326274	0.0380573	SOX3_SOX2	ENST00000508408.1|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000511704.1|BTNL8|ENSG00000113303.7|butyrophilin-like 8
hg19_v2_chr7_+_30067973_30068063	0.0380296	SOX3_SOX2	ENST00000258679.7|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000449726.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396257.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396259.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr16_+_3254247_3254247	0.0380218	SOX3_SOX2	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chr19_+_44100727_44100804	0.038011	SOX3_SOX2	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr16_+_75032901_75032974	0.0380038	SOX3_SOX2	ENST00000335325.4|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase 	ENST00000320619.6|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr17_-_17740287_17740316	0.0379709	SOX3_SOX2	ENST00000355815.4|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1 	ENST00000261646.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr14_+_50234827_50234886	0.0379453	SOX3_SOX2	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr19_-_10341948_10341965	0.0379301	SOX3_SOX2	ENST00000590320.1|S1PR2|ENSG00000267534.1|sphingosine-1-phosphate receptor 2 	ENST00000592342.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1 	ENST00000588952.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1
hg19_v2_chr14_+_101299520_101299615	0.037927	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chrX_-_106960285_106960365	0.0378326	SOX3_SOX2	ENST00000503515.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372397.2|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr12_-_11548496_11548505	0.0376804	SOX3_SOX2	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr2_+_207024306_207024392	0.037671	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr15_+_63796779_63796863	0.0376165	SOX3_SOX2	ENST00000561442.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000560070.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000540797.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000380324.3|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000268049.7|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000536001.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000539772.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3
hg19_v2_chr6_-_41040268_41040353	0.0375882	SOX3_SOX2	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr10_+_24497704_24497743	0.0374489	SOX3_SOX2	ENST00000376456.4|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000458595.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr7_-_150780487_150780597	0.0374479	SOX3_SOX2	ENST00000482202.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr4_+_52709229_52709345	0.0374122	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr2_-_38978492_38978636	0.0374019	SOX3_SOX2	ENST00000409276.1|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000446327.2|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7 	ENST00000313117.6|SRSF7|ENSG00000115875.14|serine/arginine-rich splicing factor 7
hg19_v2_chr4_-_48908805_48908821	0.0373947	SOX3_SOX2	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr13_-_45150392_45150472	0.037387	SOX3_SOX2	ENST00000501704.2|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr3_-_19988462_19988501	0.0373865	SOX3_SOX2	ENST00000344838.4|EFHB|ENSG00000163576.13|EF-hand domain family, member B
hg19_v2_chr12_-_52845910_52845938	0.0373741	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr1_-_226926864_226927038	0.0373444	SOX3_SOX2	ENST00000429204.1|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B 	ENST00000366784.1|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B
hg19_v2_chr12_-_106641728_106641805	0.0373108	SOX3_SOX2	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr19_+_45596398_45596463	0.0372055	SOX3_SOX2	ENST00000544069.2|PPP1R37|ENSG00000104866.6|protein phosphatase 1, regulatory subunit 37
hg19_v2_chr3_+_14860469_14860469	0.03708	SOX3_SOX2	ENST00000285046.5|FGD5|ENSG00000154783.6|FYVE, RhoGEF and PH domain containing 5
hg19_v2_chr22_+_47016277_47016299	0.0370203	SOX3_SOX2	ENST00000406902.1|GRAMD4|ENSG00000075240.12|GRAM domain containing 4
hg19_v2_chr3_-_167813132_167813183	0.0369459	SOX3_SOX2	ENST00000309027.4|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr11_-_67141090_67141208	0.0369134	SOX3_SOX2	ENST00000312438.7|CLCF1|ENSG00000175505.9|cardiotrophin-like cytokine factor 1
hg19_v2_chr14_-_80697396_80697402	0.0368563	SOX3_SOX2	ENST00000557010.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr7_-_144107320_144107320	0.0368229	SOX3_SOX2	ENST00000483238.1|NOBOX|ENSG00000106410.10|NOBOX oogenesis homeobox 	ENST00000467773.1|NOBOX|ENSG00000106410.10|NOBOX oogenesis homeobox
hg19_v2_chr13_+_106118592_106118619	0.0367792	SOX3_SOX2	ENST00000375936.3|DAOA|ENSG00000182346.13|D-amino acid oxidase activator 	ENST00000329625.5|DAOA|ENSG00000182346.13|D-amino acid oxidase activator
hg19_v2_chr5_+_140729649_140729828	0.0367651	SOX3_SOX2	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr4_-_48908822_48908845	0.0367168	SOX3_SOX2	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr16_-_48419361_48419408	0.0365749	SOX3_SOX2	ENST00000394725.2|SIAH1|ENSG00000196470.7|siah E3 ubiquitin protein ligase 1
hg19_v2_chr19_+_11708259_11708309	0.0365113	SOX3_SOX2	ENST00000587939.1|ZNF627|ENSG00000198551.5|zinc finger protein 627 	ENST00000588174.1|ZNF627|ENSG00000198551.5|zinc finger protein 627
hg19_v2_chr4_-_52883786_52883786	0.0363841	SOX3_SOX2	ENST00000343457.3|LRRC66|ENSG00000188993.3|leucine rich repeat containing 66
hg19_v2_chr3_+_112930387_112930431	0.0363126	SOX3_SOX2	ENST00000485230.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chrX_-_13835147_13835224	0.0361903	SOX3_SOX2	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr19_+_24009879_24009921	0.0359819	SOX3_SOX2	ENST00000354585.4|RPSAP58|ENSG00000205246.4|ribosomal protein SA pseudogene 58
hg19_v2_chr8_-_139926236_139926269	0.035923	SOX3_SOX2	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chr16_+_72459838_72459857	0.0358828	SOX3_SOX2	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr6_-_46620522_46620560	0.0358718	SOX3_SOX2	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr2_-_178128250_178128300	0.0357953	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr7_-_88425025_88425046	0.0357814	SOX3_SOX2	ENST00000297203.2|C7orf62|ENSG00000164645.2|chromosome 7 open reading frame 62
hg19_v2_chr7_-_128171123_128171144	0.0357411	SOX3_SOX2	ENST00000608477.1|RP11-212P7.2|ENSG00000273270.1|RP11-212P7.2
hg19_v2_chr19_+_56652556_56652641	0.0357049	SOX3_SOX2	ENST00000337080.3|ZNF444|ENSG00000167685.10|zinc finger protein 444
hg19_v2_chrX_-_106959631_106959775	0.0356966	SOX3_SOX2	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr2_+_202098203_202098256	0.035351	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr17_-_7145106_7145172	0.0351908	SOX3_SOX2	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr1_+_24286287_24286326	0.0351778	SOX3_SOX2	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr19_-_45004556_45004581	0.0351534	SOX3_SOX2	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr15_-_70994612_70994652	0.0350341	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr5_+_94727048_94727074	0.0350149	SOX3_SOX2	ENST00000283357.5|FAM81B|ENSG00000153347.5|family with sequence similarity 81, member B
hg19_v2_chr11_-_2906979_2907111	0.0349543	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chrX_-_128977781_128977869	0.0349399	SOX3_SOX2	ENST00000357166.6|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr3_+_183415558_183415649	0.0348344	SOX3_SOX2	ENST00000305135.5|YEATS2|ENSG00000163872.11|YEATS domain containing 2
hg19_v2_chr17_+_59489112_59489112	0.034729	SOX3_SOX2	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chrX_+_37545012_37545064	0.0346443	SOX3_SOX2	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr14_+_93799556_93799577	0.0346191	SOX3_SOX2	ENST00000256339.4|UNC79|ENSG00000133958.9|unc-79 homolog (C. elegans)
hg19_v2_chr5_+_76012009_76012024	0.0345209	SOX3_SOX2	ENST00000505600.1|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr17_-_74639886_74639920	0.0344893	SOX3_SOX2	ENST00000156626.7|ST6GALNAC1|ENSG00000070526.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
hg19_v2_chr2_+_66662690_66662711	0.0344353	SOX3_SOX2	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr1_-_9970227_9970356	0.0343751	SOX3_SOX2	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr7_-_105516923_105516982	0.034342	SOX3_SOX2	ENST00000478915.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr11_-_130184555_130184581	0.0341625	SOX3_SOX2	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr2_-_157189180_157189290	0.0340987	SOX3_SOX2	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr14_+_85996507_85996572	0.034043	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr3_-_93747425_93747454	0.0339488	SOX3_SOX2	ENST00000315099.2|STX19|ENSG00000178750.2|syntaxin 19
hg19_v2_chr1_+_100818009_100818072	0.0338825	SOX3_SOX2	ENST00000370125.2|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000361544.6|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000370124.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr4_-_100009856_100009902	0.0336874	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr14_-_69619823_69619879	0.0336771	SOX3_SOX2	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr19_+_17326191_17326215	0.0335844	SOX3_SOX2	ENST00000595101.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000596136.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000379776.4|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr9_+_39355699_39355699	0.0335317	SOX3_SOX2	ENST00000377647.3|SPATA31A1|ENSG00000204849.5|SPATA31 subfamily A, member 1
hg19_v2_chr15_-_42186248_42186275	0.0333825	SOX3_SOX2	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chr14_-_25519317_25519503	0.0333686	SOX3_SOX2	ENST00000323944.5|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr8_+_86121448_86121494	0.033344	SOX3_SOX2	ENST00000520225.1|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr2_-_109605663_109605828	0.0333032	SOX3_SOX2	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
hg19_v2_chr3_-_197024394_197024740	0.0332836	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr6_+_101847105_101847154	0.0332281	SOX3_SOX2	ENST00000369137.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000318991.6|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr6_-_52668605_52668708	0.0331852	SOX3_SOX2	ENST00000334575.5|GSTA1|ENSG00000243955.1|glutathione S-transferase alpha 1
hg19_v2_chr10_-_65028938_65028989	0.0331548	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr2_-_128568721_128568766	0.0331363	SOX3_SOX2	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr19_-_5340730_5340859	0.0331243	SOX3_SOX2	ENST00000372412.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000357368.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000262963.6|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000348075.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000353284.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chrX_+_107288197_107288212	0.0331186	SOX3_SOX2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr2_-_14541060_14541087	0.0330964	SOX3_SOX2	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr6_-_161085291_161085308	0.0330795	SOX3_SOX2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr8_-_95220775_95220820	0.0330786	SOX3_SOX2	ENST00000441892.2|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000521491.1|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000027335.3|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine)
hg19_v2_chr8_-_27468842_27468878	0.0330709	SOX3_SOX2	ENST00000523500.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr3_-_71353892_71353928	0.0330648	SOX3_SOX2	ENST00000484350.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chrX_+_147582228_147582320	0.0330557	SOX3_SOX2	ENST00000342251.3|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr12_-_10282681_10282741	0.033054	SOX3_SOX2	ENST00000533022.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr5_-_95158644_95158709	0.0329594	SOX3_SOX2	ENST00000237858.6|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr1_+_178482212_178482255	0.032896	SOX3_SOX2	ENST00000319416.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000258298.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367643.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367642.3|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr12_+_40787194_40787197	0.0328033	SOX3_SOX2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr2_+_220492116_220492137	0.0327804	SOX3_SOX2	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr18_+_32820990_32821031	0.0327043	SOX3_SOX2	ENST00000601719.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000591206.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000330501.7|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000261333.6|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000355632.4|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000585800.1|ZNF397|ENSG00000186812.8|zinc finger protein 397
hg19_v2_chr7_-_24797032_24797162	0.0326094	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr16_-_52580920_52580992	0.0324895	SOX3_SOX2	ENST00000219746.9|TOX3|ENSG00000103460.12|TOX high mobility group box family member 3
hg19_v2_chr14_-_69619291_69619326	0.0324884	SOX3_SOX2	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr7_-_38289173_38289173	0.0324863	SOX3_SOX2	ENST00000436911.2|TRGC2|ENSG00000227191.2|T cell receptor gamma constant 2
hg19_v2_chr7_+_87563557_87563735	0.0324532	SOX3_SOX2	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr11_-_6677018_6677085	0.0324065	SOX3_SOX2	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr14_-_91884150_91884234	0.0323974	SOX3_SOX2	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr5_-_40835303_40835437	0.032393	SOX3_SOX2	ENST00000509877.1|RPL37|ENSG00000145592.9|ribosomal protein L37 	ENST00000508493.1|RPL37|ENSG00000145592.9|ribosomal protein L37 	ENST00000274242.5|RPL37|ENSG00000145592.9|ribosomal protein L37
hg19_v2_chr1_-_155243235_155243307	0.0323641	SOX3_SOX2	ENST00000355560.4|CLK2|ENSG00000176444.14|CDC-like kinase 2 	ENST00000368361.4|CLK2|ENSG00000176444.14|CDC-like kinase 2
hg19_v2_chr9_+_39884975_39884975	0.0322141	SOX3_SOX2	ENST00000456183.2|SPATA31A2|ENSG00000204848.4|SPATA31 subfamily A, member 2
hg19_v2_chr20_-_1538319_1538363	0.0321788	SOX3_SOX2	ENST00000381621.1|SIRPD|ENSG00000125900.8|signal-regulatory protein delta
hg19_v2_chr1_-_6479963_6479986	0.0321068	SOX3_SOX2	ENST00000377836.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000487437.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000489730.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000377834.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2
hg19_v2_chr15_+_93749295_93749295	0.0317995	SOX3_SOX2	ENST00000599897.1|AC112693.2|ENSG00000269360.1|AC112693.2
hg19_v2_chr22_+_41865109_41865152	0.0317987	SOX3_SOX2	ENST00000216254.4|ACO2|ENSG00000100412.11|aconitase 2, mitochondrial 	ENST00000396512.3|ACO2|ENSG00000100412.11|aconitase 2, mitochondrial
hg19_v2_chr6_+_138725343_138725501	0.0316914	SOX3_SOX2	ENST00000607197.1|HEBP2|ENSG00000051620.6|heme binding protein 2 	ENST00000367697.3|HEBP2|ENSG00000051620.6|heme binding protein 2
hg19_v2_chr22_-_50746027_50746082	0.031623	SOX3_SOX2	ENST00000425954.1|PLXNB2|ENSG00000196576.10|plexin B2 	ENST00000449103.1|PLXNB2|ENSG00000196576.10|plexin B2
hg19_v2_chr2_-_151344172_151344243	0.031573	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr6_-_133055896_133055910	0.0315321	SOX3_SOX2	ENST00000367927.5|VNN3|ENSG00000093134.9|vanin 3 	ENST00000425515.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000207771.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000392393.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000450865.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000392394.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr10_-_61718429_61718429	0.0315218	SOX3_SOX2	ENST00000430888.1|C10orf40|ENSG00000235931.2|chromosome 10 open reading frame 40
hg19_v2_chr7_+_117120017_117120087	0.031293	SOX3_SOX2	ENST00000003084.6|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 	ENST00000454343.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr16_+_28875126_28875195	0.0312698	SOX3_SOX2	ENST00000359285.5|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1 	ENST00000538342.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr2_-_160472952_160473080	0.0309961	SOX3_SOX2	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr14_-_94789663_94789731	0.0309861	SOX3_SOX2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chrX_-_72434628_72434722	0.030938	SOX3_SOX2	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr1_-_211666259_211666259	0.0309378	SOX3_SOX2	ENST00000367002.4|RD3|ENSG00000198570.5|retinal degeneration 3
hg19_v2_chr4_-_48908737_48908799	0.0308829	SOX3_SOX2	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr1_+_226250379_226250427	0.030789	SOX3_SOX2	ENST00000366815.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A 	ENST00000366814.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A
hg19_v2_chr7_+_77166592_77166653	0.0307873	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr12_+_18891045_18891066	0.0307338	SOX3_SOX2	ENST00000317658.3|CAPZA3|ENSG00000177938.3|capping protein (actin filament) muscle Z-line, alpha 3
hg19_v2_chr4_+_76649797_76650004	0.0306919	SOX3_SOX2	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr1_-_235813290_235813323	0.0306423	SOX3_SOX2	ENST00000391854.2|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr17_+_34842512_34842572	0.0305909	SOX3_SOX2	ENST00000588253.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000592616.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000590858.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000588357.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3
hg19_v2_chr22_-_36357671_36357714	0.0305482	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr3_-_141747439_141747452	0.0302396	SOX3_SOX2	ENST00000467667.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr11_-_130184470_130184533	0.030125	SOX3_SOX2	ENST00000357899.4|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44 	ENST00000397753.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr2_-_74781061_74781088	0.0300898	SOX3_SOX2	ENST00000264094.3|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000393937.2|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000409986.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr2_-_100721923_100722045	0.0299911	SOX3_SOX2	ENST00000356421.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr22_+_19419425_19419425	0.029967	SOX3_SOX2	ENST00000333130.3|MRPL40|ENSG00000185608.4|mitochondrial ribosomal protein L40
hg19_v2_chr19_-_14785674_14785685	0.0298473	SOX3_SOX2	ENST00000253673.5|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr3_+_186435065_186435126	0.0298256	SOX3_SOX2	ENST00000287611.2|KNG1|ENSG00000113889.7|kininogen 1 	ENST00000265023.4|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr3_+_138067666_138067745	0.0297745	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chrX_-_73072534_73072588	0.0297396	SOX3_SOX2	ENST00000429829.1|XIST|ENSG00000229807.5|X inactive specific transcript (non-protein coding)
hg19_v2_chr11_+_46402297_46402306	0.0297357	SOX3_SOX2	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr9_-_41327364_41327364	0.0296643	SOX3_SOX2	ENST00000377509.2|SPATA31A4|ENSG00000234214.3|SPATA31 subfamily A, member 4 	ENST00000429767.1|SPATA31A4|ENSG00000234214.3|SPATA31 subfamily A, member 4
hg19_v2_chr13_+_111855414_111855417	0.0295462	SOX3_SOX2	ENST00000375737.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr2_+_33172221_33172369	0.0295367	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr8_-_144679833_144679914	0.0295177	SOX3_SOX2	ENST00000419152.2|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000423316.2|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000395119.3|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000529272.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr8_-_33424636_33424653	0.0295097	SOX3_SOX2	ENST00000256257.1|RNF122|ENSG00000133874.1|ring finger protein 122
hg19_v2_chr2_+_30569506_30569525	0.0294053	SOX3_SOX2	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr19_+_18263928_18264072	0.0293581	SOX3_SOX2	ENST00000222254.8|PIK3R2|ENSG00000105647.10|phosphoinositide-3-kinase, regulatory subunit 2 (beta)
hg19_v2_chr6_-_33385655_33385719	0.0293549	SOX3_SOX2	ENST00000440279.3|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli) 	ENST00000607266.1|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli)
hg19_v2_chr1_+_196743912_196743925	0.0293454	SOX3_SOX2	ENST00000367425.4|CFHR3|ENSG00000116785.9|complement factor H-related 3
hg19_v2_chr14_-_100772767_100772790	0.0293277	SOX3_SOX2	ENST00000392908.3|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 	ENST00000539621.1|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chr5_+_140772381_140772381	0.0293246	SOX3_SOX2	ENST00000398604.2|PCDHGA8|ENSG00000253767.1|protocadherin gamma subfamily A, 8
hg19_v2_chr19_+_45971246_45971265	0.0293052	SOX3_SOX2	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr13_-_49975632_49975735	0.0292905	SOX3_SOX2	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr1_+_200842083_200842116	0.029273	SOX3_SOX2	ENST00000304244.2|GPR25|ENSG00000170128.2|G protein-coupled receptor 25
hg19_v2_chr16_+_2083265_2083303	0.0291862	SOX3_SOX2	ENST00000565855.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 	ENST00000566198.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr12_+_8666126_8666182	0.029128	SOX3_SOX2	ENST00000299665.2|CLEC4D|ENSG00000166527.3|C-type lectin domain family 4, member D
hg19_v2_chr2_+_202098166_202098202	0.0289938	SOX3_SOX2	ENST00000392263.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264274.9|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392259.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392266.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000432109.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264275.5|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr13_+_76334795_76334809	0.0288611	SOX3_SOX2	ENST00000526202.1|LMO7|ENSG00000136153.15|LIM domain 7 	ENST00000465261.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr7_+_73868120_73868216	0.0287208	SOX3_SOX2	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr3_+_42947600_42947680	0.0286342	SOX3_SOX2	ENST00000328199.6|ZNF662|ENSG00000182983.10|zinc finger protein 662 	ENST00000541208.1|ZNF662|ENSG00000182983.10|zinc finger protein 662
hg19_v2_chr15_+_85923856_85923987	0.0285832	SOX3_SOX2	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chrX_-_132352373_132352384	0.0283994	SOX3_SOX2	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr15_-_59665062_59665099	0.0283951	SOX3_SOX2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr19_-_14785622_14785667	0.028371	SOX3_SOX2	ENST00000443157.2|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr14_-_45603657_45603732	0.0283616	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chr12_-_9360966_9360996	0.028326	SOX3_SOX2	ENST00000261336.2|PZP|ENSG00000126838.5|pregnancy-zone protein
hg19_v2_chr11_+_44117741_44117798	0.0283059	SOX3_SOX2	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr9_-_132586378_132586433	0.0282901	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chrX_-_140786896_140786896	0.0282642	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr2_-_38829768_38829825	0.0282368	SOX3_SOX2	ENST00000378915.3|HNRNPLL|ENSG00000143889.11|heterogeneous nuclear ribonucleoprotein L-like
hg19_v2_chr4_-_140216948_140216999	0.0280484	SOX3_SOX2	ENST00000265500.4|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr13_+_76210448_76210494	0.0279954	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr15_+_69857515_69857531	0.0279767	SOX3_SOX2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr17_+_16284104_16284245	0.0279671	SOX3_SOX2	ENST00000577958.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000302182.3|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000577640.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr2_+_46926326_46926452	0.0279355	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr17_+_35851570_35851667	0.0278945	SOX3_SOX2	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr19_+_52772821_52772828	0.0278623	SOX3_SOX2	ENST00000439461.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr17_-_46690839_46690884	0.0277998	SOX3_SOX2	ENST00000498634.2|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr22_+_38864041_38864150	0.0276912	SOX3_SOX2	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr22_+_21771656_21771693	0.0275906	SOX3_SOX2	ENST00000407464.2|HIC2|ENSG00000169635.5|hypermethylated in cancer 2
hg19_v2_chr5_+_180326077_180326136	0.027522	SOX3_SOX2	ENST00000231229.4|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000340184.4|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000400707.3|BTNL8|ENSG00000113303.7|butyrophilin-like 8
hg19_v2_chr17_-_17740325_17740349	0.0274986	SOX3_SOX2	ENST00000338854.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr12_-_8815215_8815298	0.027449	SOX3_SOX2	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr17_+_34842473_34842507	0.0274438	SOX3_SOX2	ENST00000490126.2|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000225410.4|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3
hg19_v2_chr6_-_13328564_13328815	0.0274303	SOX3_SOX2	ENST00000606530.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607658.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000343141.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000356436.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379300.3|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000452989.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000450347.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000422136.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000446018.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379291.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379307.2|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000606370.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607230.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7
hg19_v2_chr1_+_223566715_223566791	0.0273685	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr20_+_43211149_43211266	0.0273641	SOX3_SOX2	ENST00000372886.1|PKIG|ENSG00000168734.9|protein kinase (cAMP-dependent, catalytic) inhibitor gamma
hg19_v2_chr18_-_47013586_47013633	0.0273414	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr2_-_9143786_9143942	0.027333	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr4_-_106629796_106629863	0.0273087	SOX3_SOX2	ENST00000416543.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000515819.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000420368.2|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000503746.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000340139.5|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000433009.1|INTS12|ENSG00000138785.10|integrator complex subunit 12
hg19_v2_chr3_+_181429704_181429722	0.0272334	SOX3_SOX2	ENST00000431565.2|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2 	ENST00000325404.1|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2
hg19_v2_chr2_-_183106641_183106754	0.0271826	SOX3_SOX2	ENST00000346717.4|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr17_+_8339164_8339186	0.027012	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr19_+_19303572_19303651	0.0268871	SOX3_SOX2	ENST00000407360.3|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein 	ENST00000540981.1|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr1_+_66797687_66797884	0.0268777	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr7_+_134551583_134551599	0.0268059	SOX3_SOX2	ENST00000435928.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr7_+_148844516_148844577	0.0267311	SOX3_SOX2	ENST00000420008.2|ZNF398|ENSG00000197024.4|zinc finger protein 398 	ENST00000475153.1|ZNF398|ENSG00000197024.4|zinc finger protein 398
hg19_v2_chr2_-_180129484_180129574	0.0266672	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr11_-_119991589_119991609	0.0265896	SOX3_SOX2	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr7_-_121944491_121944705	0.0265627	SOX3_SOX2	ENST00000331178.4|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000427185.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000442488.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1
hg19_v2_chr6_+_32811861_32811872	0.026547	SOX3_SOX2	ENST00000453426.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr17_+_55334364_55334412	0.026518	SOX3_SOX2	ENST00000322684.3|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2 	ENST00000579590.1|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chrX_+_153626708_153626730	0.0264383	SOX3_SOX2	ENST00000436473.1|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000344746.4|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000458500.1|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr15_+_50474385_50474404	0.0264337	SOX3_SOX2	ENST00000267842.5|SLC27A2|ENSG00000140284.6|solute carrier family 27 (fatty acid transporter), member 2
hg19_v2_chr12_+_110152033_110152033	0.026151	SOX3_SOX2	ENST00000538780.1|FAM222A|ENSG00000139438.5|family with sequence similarity 222, member A
hg19_v2_chr22_-_23484246_23484283	0.0261509	SOX3_SOX2	ENST00000216036.4|RTDR1|ENSG00000100218.7|rhabdoid tumor deletion region gene 1
hg19_v2_chr6_+_42981922_42982047	0.0260851	SOX3_SOX2	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr2_-_20425158_20425206	0.0260846	SOX3_SOX2	ENST00000381150.1|SDC1|ENSG00000115884.6|syndecan 1
hg19_v2_chr1_+_87797351_87797441	0.0260482	SOX3_SOX2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr6_-_31697977_31698052	0.026031	SOX3_SOX2	ENST00000375787.2|DDAH2|ENSG00000213722.4|dimethylarginine dimethylaminohydrolase 2
hg19_v2_chr6_-_80247140_80247175	0.0259679	SOX3_SOX2	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr10_+_11047259_11047351	0.0258728	SOX3_SOX2	ENST00000379261.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000416382.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr7_+_101459263_101459310	0.0258639	SOX3_SOX2	ENST00000292538.4|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000393824.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000547394.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000360264.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000425244.2|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chrX_-_15683147_15683159	0.025776	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr14_+_39644387_39644417	0.0257053	SOX3_SOX2	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr3_+_130613001_130613078	0.0256659	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr19_+_48972459_48972490	0.0256256	SOX3_SOX2	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr2_+_220492287_220492338	0.0255727	SOX3_SOX2	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr8_-_144679532_144679595	0.0255652	SOX3_SOX2	ENST00000534380.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000533494.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000531218.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000526340.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000533204.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000532400.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000529516.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000534377.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000531621.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000530191.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000524900.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000526838.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000531931.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000534475.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000442189.2|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000524624.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000532596.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000529832.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000530306.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000530545.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000525261.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000534804.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000528303.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 	ENST00000528610.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr17_-_36831156_36831187	0.0255306	SOX3_SOX2	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr1_-_145589424_145589471	0.0254989	SOX3_SOX2	ENST00000334513.5|NUDT17|ENSG00000186364.7|nudix (nucleoside diphosphate linked moiety X)-type motif 17
hg19_v2_chr19_-_55874611_55874633	0.0254397	SOX3_SOX2	ENST00000424985.3|FAM71E2|ENSG00000180043.7|family with sequence similarity 71, member E2
hg19_v2_chr19_-_58400372_58400411	0.0253988	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr7_+_73868439_73868450	0.0253524	SOX3_SOX2	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr6_+_108881012_108881038	0.025294	SOX3_SOX2	ENST00000343882.6|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr19_+_19303720_19303783	0.0252757	SOX3_SOX2	ENST00000392324.4|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr3_+_50192499_50192534	0.0251952	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr3_+_51428704_51428737	0.0251519	SOX3_SOX2	ENST00000323686.4|RBM15B|ENSG00000179837.6|RNA binding motif protein 15B
hg19_v2_chr6_-_167040731_167040745	0.0250666	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_+_235492300_235492344	0.0250381	SOX3_SOX2	ENST00000476121.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000497327.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr1_+_169075554_169075571	0.0250217	SOX3_SOX2	ENST00000367815.4|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr1_+_206557366_206557368	0.0249825	SOX3_SOX2	ENST00000414007.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2 	ENST00000419187.2|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chr12_-_10282836_10282863	0.0249173	SOX3_SOX2	ENST00000304084.8|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000353231.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000525605.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr10_+_89622870_89622870	0.0249124	SOX3_SOX2	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr1_+_54411715_54411760	0.0247715	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr9_+_70971815_70971841	0.0246646	SOX3_SOX2	ENST00000396392.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5 	ENST00000396396.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5
hg19_v2_chr13_+_113030658_113030702	0.0245682	SOX3_SOX2	ENST00000414180.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7 	ENST00000443541.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr19_-_14785698_14785810	0.0244733	SOX3_SOX2	ENST00000344373.4|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3 	ENST00000595472.1|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr8_+_9911778_9911880	0.0244602	SOX3_SOX2	ENST00000317173.4|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A 	ENST00000441698.2|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A
hg19_v2_chr22_-_31536480_31536593	0.0244075	SOX3_SOX2	ENST00000215885.3|PLA2G3|ENSG00000100078.3|phospholipase A2, group III
hg19_v2_chr17_-_26301249_26301266	0.0243805	SOX3_SOX2	ENST00000567574.1|RP11-218F4.1|ENSG00000260019.1|RP11-218F4.1
hg19_v2_chr7_+_94537542_94537591	0.0242762	SOX3_SOX2	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr1_+_147400506_147400549	0.0242758	SOX3_SOX2	ENST00000314163.7|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B 	ENST00000468618.2|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B
hg19_v2_chr15_-_65398647_65398697	0.0242731	SOX3_SOX2	ENST00000502113.2|UBAP1L|ENSG00000246922.4|ubiquitin associated protein 1-like
hg19_v2_chr4_+_141445311_141445332	0.0241965	SOX3_SOX2	ENST00000323570.3|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2 	ENST00000511887.2|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr5_+_69321074_69321200	0.0241938	SOX3_SOX2	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr7_-_148787768_148787874	0.0241863	SOX3_SOX2	ENST00000491431.1|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000451334.3|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000316286.9|ZNF786|ENSG00000197362.9|zinc finger protein 786
hg19_v2_chr9_-_34620440_34620515	0.0241749	SOX3_SOX2	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr3_-_45267760_45267826	0.0241408	SOX3_SOX2	ENST00000503771.1|TMEM158|ENSG00000249992.1|transmembrane protein 158 (gene/pseudogene)
hg19_v2_chr10_+_72164135_72164135	0.0241015	SOX3_SOX2	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr2_+_71295717_71295732	0.0239717	SOX3_SOX2	ENST00000418807.3|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000443872.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr12_+_64238539_64238600	0.0238656	SOX3_SOX2	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chr20_+_58713514_58713554	0.0238425	SOX3_SOX2	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chr4_-_103266355_103266371	0.0238	SOX3_SOX2	ENST00000424970.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr7_-_155604967_155605105	0.0237925	SOX3_SOX2	ENST00000297261.2|SHH|ENSG00000164690.3|sonic hedgehog
hg19_v2_chr21_-_27423339_27423352	0.0237825	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr11_-_57148619_57148624	0.0237551	SOX3_SOX2	ENST00000287143.2|PRG3|ENSG00000156575.2|proteoglycan 3
hg19_v2_chr2_+_219283815_219283853	0.0237272	SOX3_SOX2	ENST00000248444.5|VIL1|ENSG00000127831.6|villin 1 	ENST00000454069.1|VIL1|ENSG00000127831.6|villin 1 	ENST00000392114.2|VIL1|ENSG00000127831.6|villin 1
hg19_v2_chr6_-_80247105_80247133	0.0237259	SOX3_SOX2	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr3_+_152879985_152880038	0.0237154	SOX3_SOX2	ENST00000323534.2|RAP2B|ENSG00000181467.2|RAP2B, member of RAS oncogene family
hg19_v2_chr14_+_72052983_72053003	0.0236648	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr7_+_5938351_5938379	0.0236294	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr1_-_201123586_201123637	0.0236177	SOX3_SOX2	ENST00000414605.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367334.5|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367332.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chrX_+_51928002_51928017	0.0235599	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr2_+_105858200_105858200	0.0235155	SOX3_SOX2	ENST00000258456.1|GPR45|ENSG00000135973.1|G protein-coupled receptor 45
hg19_v2_chr8_+_67405755_67405789	0.0235034	SOX3_SOX2	ENST00000521495.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chrX_+_153626571_153626627	0.0234926	SOX3_SOX2	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr17_-_17184605_17184622	0.023459	SOX3_SOX2	ENST00000268717.5|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr6_+_32132360_32132437	0.0234018	SOX3_SOX2	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr12_-_8815299_8815331	0.023385	SOX3_SOX2	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr10_-_91174215_91174314	0.023375	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chr14_-_21567009_21567173	0.023272	SOX3_SOX2	ENST00000556174.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000554478.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000553980.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000421093.2|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr16_+_1832902_1833008	0.0232695	SOX3_SOX2	ENST00000262302.9|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000563136.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565987.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000543305.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000568287.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565134.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2
hg19_v2_chr7_-_100425112_100425121	0.0232615	SOX3_SOX2	ENST00000358173.3|EPHB4|ENSG00000196411.5|EPH receptor B4
hg19_v2_chr11_+_114168085_114168222	0.0232584	SOX3_SOX2	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr4_+_55524085_55524110	0.0231972	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr5_+_67588391_67588411	0.0231926	SOX3_SOX2	ENST00000523872.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr8_+_107738240_107738340	0.0231573	SOX3_SOX2	ENST00000449762.2|OXR1|ENSG00000164830.13|oxidation resistance 1 	ENST00000297447.6|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr14_-_23451845_23451856	0.0231193	SOX3_SOX2	ENST00000262713.2|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr13_+_97874574_97874609	0.0230954	SOX3_SOX2	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr8_+_39759794_39759899	0.0230951	SOX3_SOX2	ENST00000518804.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000519154.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522495.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522840.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1
hg19_v2_chr7_-_50628745_50628778	0.0230948	SOX3_SOX2	ENST00000380984.4|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000357936.5|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000426377.1|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase)
hg19_v2_chr2_+_25264933_25264999	0.0230733	SOX3_SOX2	ENST00000401432.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae) 	ENST00000403714.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae)
hg19_v2_chr17_+_8339189_8339285	0.0230275	SOX3_SOX2	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr10_-_65028817_65028828	0.0229935	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr1_-_43424500_43424546	0.0229854	SOX3_SOX2	ENST00000415851.2|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000426263.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000372500.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1
hg19_v2_chr8_+_67405794_67405862	0.0229306	SOX3_SOX2	ENST00000522977.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46 	ENST00000480005.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr1_-_23670817_23670829	0.0229154	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr7_+_26191809_26191890	0.0229103	SOX3_SOX2	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr20_+_62152077_62152136	0.022827	SOX3_SOX2	ENST00000370179.3|PPDPF|ENSG00000125534.5|pancreatic progenitor cell differentiation and proliferation factor 	ENST00000370177.1|PPDPF|ENSG00000125534.5|pancreatic progenitor cell differentiation and proliferation factor
hg19_v2_chr4_+_78079570_78079586	0.0227664	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr5_-_160973649_160973713	0.0226015	SOX3_SOX2	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chrX_+_102631844_102632109	0.0225943	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr7_+_134464376_134464413	0.0225839	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr2_-_127977654_127977654	0.0224691	SOX3_SOX2	ENST00000409327.1|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr6_-_72130472_72130519	0.0224042	SOX3_SOX2	ENST00000426635.2|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr1_+_67632083_67632169	0.0223105	SOX3_SOX2	ENST00000347310.5|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000371002.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr11_-_3400330_3400422	0.02231	SOX3_SOX2	ENST00000427810.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000005082.9|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000534569.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000438262.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528796.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528410.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000529678.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000354599.6|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000526601.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000525502.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000533036.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000399602.4|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr6_-_52774464_52774499	0.0222016	SOX3_SOX2	ENST00000370968.1|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3 	ENST00000211122.3|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3
hg19_v2_chr12_-_49075941_49076001	0.022192	SOX3_SOX2	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr5_+_175288631_175288690	0.0221501	SOX3_SOX2	ENST00000509837.1|CPLX2|ENSG00000145920.10|complexin 2
hg19_v2_chr17_+_77030267_77030391	0.0221451	SOX3_SOX2	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr2_+_102953608_102953727	0.0219761	SOX3_SOX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr3_+_50192537_50192563	0.0218931	SOX3_SOX2	ENST00000002829.3|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr22_-_17602200_17602265	0.0218791	SOX3_SOX2	ENST00000399875.1|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr10_+_24755416_24755470	0.021865	SOX3_SOX2	ENST00000396446.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000396445.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376451.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr1_-_155880672_155880715	0.021861	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr7_+_30068260_30068301	0.0218582	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr14_+_53019993_53020137	0.0218496	SOX3_SOX2	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chrX_+_86772707_86772752	0.0218439	SOX3_SOX2	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr1_+_40915725_40915808	0.0218128	SOX3_SOX2	ENST00000484445.1|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000411995.2|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000361584.3|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B
hg19_v2_chr14_-_25519095_25519280	0.0217794	SOX3_SOX2	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr1_-_78149041_78149142	0.0216193	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr14_-_21056121_21056206	0.0216136	SOX3_SOX2	ENST00000557105.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398008.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000555841.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000443456.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000432835.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000557503.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398009.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000554842.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr19_-_20150301_20150321	0.0215931	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr11_+_45943169_45943198	0.0214849	SOX3_SOX2	ENST00000529052.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B 	ENST00000531526.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B
hg19_v2_chr17_-_48207157_48207246	0.0214778	SOX3_SOX2	ENST00000330175.4|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14 	ENST00000503131.1|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14
hg19_v2_chr1_-_89357179_89357301	0.0213675	SOX3_SOX2	ENST00000448623.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000418217.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000370500.5|GTF2B|ENSG00000137947.7|general transcription factor IIB
hg19_v2_chr5_-_140700322_140700358	0.0213453	SOX3_SOX2	ENST00000313368.5|TAF7|ENSG00000178913.5|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
hg19_v2_chr13_-_111567353_111567432	0.0213072	SOX3_SOX2	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chrY_-_24242154_24242154	0.0212773	SOX3_SOX2	ENST00000303804.1|PRY2|ENSG00000169807.6|PTPN13-like, Y-linked 2 	ENST00000341740.2|PRY2|ENSG00000169807.6|PTPN13-like, Y-linked 2
hg19_v2_chr5_+_140248518_140248689	0.0212413	SOX3_SOX2	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr6_-_108582168_108582256	0.0212321	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chr9_+_80912059_80912081	0.0212209	SOX3_SOX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr17_+_2240916_2240989	0.0211999	SOX3_SOX2	ENST00000574563.1|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr10_+_69644404_69644427	0.0211908	SOX3_SOX2	ENST00000212015.6|SIRT1|ENSG00000096717.7|sirtuin 1
hg19_v2_chr12_-_99548524_99548550	0.0211602	SOX3_SOX2	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr18_-_78005231_78005435	0.0211521	SOX3_SOX2	ENST00000470488.2|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma 	ENST00000353265.3|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma
hg19_v2_chr7_+_134464414_134464429	0.0211386	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_-_21671968_21672009	0.0211323	SOX3_SOX2	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr4_-_169239921_169239972	0.0211197	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr9_+_41500679_41500679	0.0210132	SOX3_SOX2	ENST00000377621.1|SPATA31A5|ENSG00000233788.4|SPATA31 subfamily A, member 5
hg19_v2_chr15_-_65281775_65281844	0.02098	SOX3_SOX2	ENST00000433215.2|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000558415.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000557795.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome)
hg19_v2_chr6_-_32811771_32811831	0.0209201	SOX3_SOX2	ENST00000395339.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8 	ENST00000374882.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8
hg19_v2_chr1_-_24438664_24438671	0.0209172	SOX3_SOX2	ENST00000374434.3|MYOM3|ENSG00000142661.14|myomesin 3 	ENST00000330966.7|MYOM3|ENSG00000142661.14|myomesin 3 	ENST00000329601.7|MYOM3|ENSG00000142661.14|myomesin 3
hg19_v2_chr14_+_22670455_22670477	0.0208309	SOX3_SOX2	ENST00000390460.1|TRAV26-2|ENSG00000211812.1|T cell receptor alpha variable 26-2
hg19_v2_chr1_+_185014496_185014518	0.0207947	SOX3_SOX2	ENST00000367510.3|RNF2|ENSG00000121481.6|ring finger protein 2
hg19_v2_chr3_+_35721182_35721277	0.0207151	SOX3_SOX2	ENST00000413378.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000417925.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr5_+_140743859_140743898	0.0207021	SOX3_SOX2	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr16_-_28503080_28503304	0.020689	SOX3_SOX2	ENST00000565316.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000565778.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357857.9|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000568558.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357806.7|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chr16_+_68279207_68279252	0.0206402	SOX3_SOX2	ENST00000413021.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000565744.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000219345.5|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chr9_+_90497741_90497775	0.0206353	SOX3_SOX2	ENST00000325643.5|SPATA31E1|ENSG00000177992.9|SPATA31 subfamily E, member 1
hg19_v2_chr14_-_57960545_57960595	0.0205626	SOX3_SOX2	ENST00000526336.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000216445.3|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr16_-_3930724_3930735	0.0204797	SOX3_SOX2	ENST00000262367.5|CREBBP|ENSG00000005339.8|CREB binding protein
hg19_v2_chr17_+_75283973_75284045	0.0204676	SOX3_SOX2	ENST00000431235.2|SEPT9|ENSG00000184640.13|septin 9 	ENST00000449803.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr12_-_54673871_54673925	0.0204143	SOX3_SOX2	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr9_+_95947198_95947225	0.0203781	SOX3_SOX2	ENST00000448039.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000297954.4|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000395477.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000395475.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000349097.3|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000427277.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000356055.3|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000432730.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2
hg19_v2_chr9_-_36401155_36401219	0.0203702	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr5_+_74062806_74062840	0.0203514	SOX3_SOX2	ENST00000296802.5|NSA2|ENSG00000164346.5|NSA2 ribosome biogenesis homolog (S. cerevisiae)
hg19_v2_chr6_-_132834184_132834337	0.0202726	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr4_+_78079450_78079563	0.0201608	SOX3_SOX2	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chrX_+_107288239_107288259	0.0201598	SOX3_SOX2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr12_-_8815477_8815490	0.0200857	SOX3_SOX2	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr17_-_55822653_55822673	0.0200425	SOX3_SOX2	ENST00000299415.2|AC007431.1|ENSG00000166329.2|coiled-coil domain containing 182
hg19_v2_chr14_+_22458631_22458735	0.0200346	SOX3_SOX2	ENST00000390444.1|TRAV16|ENSG00000211796.1|T cell receptor alpha variable 16
hg19_v2_chrX_-_80457385_80457441	0.0199554	SOX3_SOX2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr4_+_41983713_41983798	0.0198944	SOX3_SOX2	ENST00000333141.5|DCAF4L1|ENSG00000182308.5|DDB1 and CUL4 associated factor 4-like 1
hg19_v2_chr21_-_40720995_40721126	0.0196665	SOX3_SOX2	ENST00000380749.5|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr1_+_12538594_12538614	0.0195809	SOX3_SOX2	ENST00000543710.1|VPS13D|ENSG00000048707.9|vacuolar protein sorting 13 homolog D (S. cerevisiae)
hg19_v2_chr10_+_24498060_24498102	0.0195806	SOX3_SOX2	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr20_-_30433396_30433420	0.0195584	SOX3_SOX2	ENST00000375978.3|FOXS1|ENSG00000179772.6|forkhead box S1
hg19_v2_chr7_-_30066233_30066332	0.019552	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr1_-_11024258_11024258	0.0194796	SOX3_SOX2	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr9_-_36400857_36400902	0.0194791	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr22_-_17602143_17602175	0.0194375	SOX3_SOX2	ENST00000331437.3|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr5_+_109025067_109025146	0.019432	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr2_+_191273052_191273121	0.0194211	SOX3_SOX2	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr18_-_29340827_29340845	0.0194016	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr12_-_56352368_56352387	0.0193805	SOX3_SOX2	ENST00000549404.1|PMEL|ENSG00000185664.10|premelanosome protein
hg19_v2_chr16_-_8962544_8962584	0.0193008	SOX3_SOX2	ENST00000570125.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr4_-_80993717_80993850	0.0192246	SOX3_SOX2	ENST00000307333.7|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr17_+_8924837_8924872	0.019204	SOX3_SOX2	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr6_+_20403997_20404034	0.019195	SOX3_SOX2	ENST00000535432.1|E2F3|ENSG00000112242.10|E2F transcription factor 3
hg19_v2_chr11_-_58499434_58499452	0.0191313	SOX3_SOX2	ENST00000344743.3|GLYAT|ENSG00000149124.6|glycine-N-acyltransferase 	ENST00000278400.3|GLYAT|ENSG00000149124.6|glycine-N-acyltransferase
hg19_v2_chr7_+_114055052_114055378	0.0191082	SOX3_SOX2	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr13_+_113656022_113656041	0.019075	SOX3_SOX2	ENST00000423482.2|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr1_-_145827015_145827103	0.0190218	SOX3_SOX2	ENST00000534502.1|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000313835.9|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000454423.3|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A
hg19_v2_chr6_-_2972075_2972090	0.0190148	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr6_+_46620676_46620696	0.018955	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr2_+_70142189_70142223	0.0189529	SOX3_SOX2	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr2_+_8822113_8822196	0.0189358	SOX3_SOX2	ENST00000396290.1|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 	ENST00000331129.3|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
hg19_v2_chr6_+_29429217_29429217	0.0188732	SOX3_SOX2	ENST00000396792.2|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr19_-_20150014_20150085	0.0187645	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr7_-_8302207_8302242	0.0185273	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr17_+_7621045_7621079	0.0184667	SOX3_SOX2	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr4_+_128554081_128554121	0.0183872	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr10_-_62704005_62704045	0.0183859	SOX3_SOX2	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr12_-_129308487_129308588	0.0183838	SOX3_SOX2	ENST00000266771.5|SLC15A4|ENSG00000139370.6|solute carrier family 15 (oligopeptide transporter), member 4
hg19_v2_chr13_-_99852916_99852964	0.0183661	SOX3_SOX2	ENST00000426037.2|UBAC2-AS1|ENSG00000228889.2|UBAC2 antisense RNA 1 	ENST00000445737.2|UBAC2-AS1|ENSG00000228889.2|UBAC2 antisense RNA 1
hg19_v2_chr1_-_115300579_115300590	0.0183389	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr17_+_31254892_31254955	0.0182405	SOX3_SOX2	ENST00000394642.3|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000579849.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr5_-_27038683_27038700	0.018238	SOX3_SOX2	ENST00000511822.1|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin) 	ENST00000231021.4|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin)
hg19_v2_chr7_-_140178726_140178774	0.0182239	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr14_+_22948510_22948510	0.018176	SOX3_SOX2	ENST00000390483.1|TRAJ56|ENSG00000211835.1|T cell receptor alpha joining 56
hg19_v2_chr8_-_9009079_9009092	0.018107	SOX3_SOX2	ENST00000519699.1|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr3_+_48507621_48507689	0.0181024	SOX3_SOX2	ENST00000456089.1|TREX1|ENSG00000213689.5|three prime repair exonuclease 1
hg19_v2_chr1_+_111992064_111992142	0.0180701	SOX3_SOX2	ENST00000483994.1|ATP5F1|ENSG00000116459.6|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1
hg19_v2_chr19_-_23941639_23941672	0.0180523	SOX3_SOX2	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr10_-_25012115_25012174	0.0180233	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr13_+_43355732_43355757	0.0179973	SOX3_SOX2	ENST00000313851.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr3_-_88108192_88108203	0.0179899	SOX3_SOX2	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr12_-_50643664_50643679	0.0179893	SOX3_SOX2	ENST00000550592.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chr14_+_67707826_67707994	0.0179714	SOX3_SOX2	ENST00000261681.4|MPP5|ENSG00000072415.4|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
hg19_v2_chr5_+_156607829_156607946	0.0178784	SOX3_SOX2	ENST00000422843.3|ITK|ENSG00000113263.8|IL2-inducible T-cell kinase
hg19_v2_chr7_-_26904317_26904362	0.0178588	SOX3_SOX2	ENST00000345317.2|SKAP2|ENSG00000005020.8|src kinase associated phosphoprotein 2
hg19_v2_chr2_-_70995307_70995344	0.017839	SOX3_SOX2	ENST00000264436.4|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000355733.3|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000447731.2|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000430656.1|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000413157.2|ADD2|ENSG00000075340.18|adducin 2 (beta)
hg19_v2_chr1_-_108743471_108743499	0.0178324	SOX3_SOX2	ENST00000569674.1|SLC25A24|ENSG00000085491.11|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
hg19_v2_chr12_-_104532062_104532071	0.0177921	SOX3_SOX2	ENST00000240055.3|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr17_+_16284399_16284416	0.0177899	SOX3_SOX2	ENST00000535788.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr6_-_35656712_35656723	0.0177521	SOX3_SOX2	ENST00000357266.4|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000542713.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr19_+_57019212_57019250	0.0177447	SOX3_SOX2	ENST00000308031.5|ZNF471|ENSG00000196263.3|zinc finger protein 471 	ENST00000591537.1|ZNF471|ENSG00000196263.3|zinc finger protein 471
hg19_v2_chr8_+_144679984_144680074	0.0177255	SOX3_SOX2	ENST00000504548.2|TIGD5|ENSG00000179886.4|tigger transposable element derived 5 	ENST00000321385.3|TIGD5|ENSG00000179886.4|tigger transposable element derived 5
hg19_v2_chr19_-_47164386_47164456	0.0177135	SOX3_SOX2	ENST00000391916.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3 	ENST00000410105.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr15_+_71184931_71184974	0.017682	SOX3_SOX2	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr19_-_20150252_20150298	0.0176014	SOX3_SOX2	ENST00000595736.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000593468.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000596019.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr10_-_25012597_25012732	0.0175322	SOX3_SOX2	ENST00000396432.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr3_-_46904918_46904940	0.0174542	SOX3_SOX2	ENST00000395869.1|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr1_+_64239657_64239724	0.0174283	SOX3_SOX2	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr14_-_89878369_89878496	0.0174162	SOX3_SOX2	ENST00000553840.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000556916.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr19_-_36304201_36304201	0.0173747	SOX3_SOX2	ENST00000301175.3|PRODH2|ENSG00000250799.5|proline dehydrogenase (oxidase) 2
hg19_v2_chr6_-_55443831_55443908	0.0172959	SOX3_SOX2	ENST00000428842.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000358072.5|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000508459.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
hg19_v2_chr4_+_95917383_95917421	0.0172886	SOX3_SOX2	ENST00000512312.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr22_+_39052632_39052692	0.0171722	SOX3_SOX2	ENST00000411557.1|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000396811.2|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000216029.3|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000416285.1|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila)
hg19_v2_chr4_+_189060573_189060573	0.0171507	SOX3_SOX2	ENST00000332517.3|TRIML1|ENSG00000184108.3|tripartite motif family-like 1
hg19_v2_chr12_+_14572070_14572164	0.0170554	SOX3_SOX2	ENST00000545769.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000428217.2|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000396279.2|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000542514.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536279.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr2_+_89901292_89901292	0.0169851	SOX3_SOX2	ENST00000448155.2|IGKV1D-39|ENSG00000251546.1|immunoglobulin kappa variable 1D-39
hg19_v2_chr2_+_183580954_183581049	0.0169835	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr14_+_52456327_52456344	0.0168971	SOX3_SOX2	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr16_-_28503357_28503409	0.0168912	SOX3_SOX2	ENST00000333496.9|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000561505.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000567963.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000354630.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000355477.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000357076.5|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000565688.1|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3 	ENST00000359984.7|CLN3|ENSG00000188603.12|ceroid-lipofuscinosis, neuronal 3
hg19_v2_chrX_-_15332665_15332693	0.0168683	SOX3_SOX2	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chr14_+_52456193_52456320	0.0168485	SOX3_SOX2	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr6_+_43266063_43266097	0.0167355	SOX3_SOX2	ENST00000372574.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr7_-_130353553_130353598	0.0166547	SOX3_SOX2	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr1_-_113160826_113160844	0.0165336	SOX3_SOX2	ENST00000538187.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369664.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chr14_+_103589789_103589804	0.0164576	SOX3_SOX2	ENST00000558056.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2 	ENST00000560869.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr15_-_20193370_20193370	0.0164506	SOX3_SOX2	ENST00000558565.2|IGHV3OR15-7|ENSG00000259490.2|immunoglobulin heavy variable 3/OR15-7 (pseudogene)
hg19_v2_chr14_+_35761580_35761679	0.0163903	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr7_+_73703728_73703807	0.0163453	SOX3_SOX2	ENST00000361545.5|CLIP2|ENSG00000106665.11|CAP-GLY domain containing linker protein 2 	ENST00000223398.6|CLIP2|ENSG00000106665.11|CAP-GLY domain containing linker protein 2
hg19_v2_chr12_+_109915179_109915220	0.0163362	SOX3_SOX2	ENST00000434735.2|UBE3B|ENSG00000151148.9|ubiquitin protein ligase E3B
hg19_v2_chr6_-_127840453_127840507	0.0163283	SOX3_SOX2	ENST00000556132.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr12_-_46766577_46766650	0.0162886	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chrX_-_140673133_140673133	0.0162629	SOX3_SOX2	ENST00000370519.3|SPANXA1|ENSG00000198021.5|sperm protein associated with the nucleus, X-linked, family member A1
hg19_v2_chr1_-_151032040_151032125	0.0162563	SOX3_SOX2	ENST00000540998.1|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1 	ENST00000357235.5|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1
hg19_v2_chr2_+_10183651_10183713	0.0161693	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chr9_-_140196703_140196744	0.0161441	SOX3_SOX2	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr2_-_97535708_97535843	0.0161105	SOX3_SOX2	ENST00000305476.5|SEMA4C|ENSG00000168758.6|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
hg19_v2_chr13_-_103451307_103451380	0.0160951	SOX3_SOX2	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr9_-_36400213_36400296	0.0160125	SOX3_SOX2	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr21_-_40685477_40685496	0.0159764	SOX3_SOX2	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr12_-_18890940_18890991	0.0159721	SOX3_SOX2	ENST00000543242.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000539072.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000541966.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000266505.7|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000447925.2|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000435379.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1
hg19_v2_chr9_-_88896977_88897023	0.0159309	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr13_-_28545276_28545276	0.015914	SOX3_SOX2	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr4_-_110624564_110624739	0.0158667	SOX3_SOX2	ENST00000352981.3|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000265164.2|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000505486.1|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase
hg19_v2_chr18_+_55888767_55888809	0.0158278	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr2_-_238499131_238499206	0.0158275	SOX3_SOX2	ENST00000538644.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr9_+_133710453_133710453	0.0158245	SOX3_SOX2	ENST00000318560.5|ABL1|ENSG00000097007.13|c-abl oncogene 1, non-receptor tyrosine kinase
hg19_v2_chr1_-_235814048_235814067	0.0158178	SOX3_SOX2	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr1_+_26737253_26737269	0.0158087	SOX3_SOX2	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr11_-_126081532_126081587	0.0158008	SOX3_SOX2	ENST00000533628.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000298317.4|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000532674.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4
hg19_v2_chr1_+_35734562_35734573	0.0156476	SOX3_SOX2	ENST00000314607.6|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4 	ENST00000373297.2|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr19_-_18717627_18717660	0.0156336	SOX3_SOX2	ENST00000392386.3|CRLF1|ENSG00000006016.6|cytokine receptor-like factor 1
hg19_v2_chr19_+_41256764_41256825	0.0156228	SOX3_SOX2	ENST00000243563.3|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000601253.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000597353.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000599362.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr11_+_114128522_114128553	0.0156113	SOX3_SOX2	ENST00000535401.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr11_+_114271251_114271300	0.015526	SOX3_SOX2	ENST00000375490.5|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr17_-_8079648_8079737	0.0154114	SOX3_SOX2	ENST00000449985.2|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000532998.1|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000437139.2|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000533070.1|TMEM107|ENSG00000179029.10|transmembrane protein 107 	ENST00000316425.5|TMEM107|ENSG00000179029.10|transmembrane protein 107
hg19_v2_chr4_+_39046615_39046680	0.0153951	SOX3_SOX2	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr7_+_48211048_48211063	0.0153871	SOX3_SOX2	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr4_+_95972822_95972844	0.0153364	SOX3_SOX2	ENST00000509540.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB 	ENST00000440890.2|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr15_+_64388166_64388225	0.0153246	SOX3_SOX2	ENST00000353874.4|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000261889.5|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000559844.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000561026.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000558040.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr6_-_161695074_161695112	0.0151842	SOX3_SOX2	ENST00000457520.2|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366906.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000320285.4|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr4_-_85887503_85887544	0.015153	SOX3_SOX2	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr1_-_154150651_154150691	0.0151523	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr2_+_47168313_47168425	0.015115	SOX3_SOX2	ENST00000319190.5|TTC7A|ENSG00000068724.11|tetratricopeptide repeat domain 7A 	ENST00000394850.2|TTC7A|ENSG00000068724.11|tetratricopeptide repeat domain 7A 	ENST00000536057.1|TTC7A|ENSG00000068724.11|tetratricopeptide repeat domain 7A
hg19_v2_chr15_+_76196234_76196466	0.0150877	SOX3_SOX2	ENST00000540507.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000565036.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000569054.1|FBXO22|ENSG00000167196.9|F-box protein 22
hg19_v2_chr11_+_94227129_94227195	0.0150854	SOX3_SOX2	ENST00000540349.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000535502.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000545130.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000544253.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000541144.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49
hg19_v2_chr17_-_15469590_15469590	0.0149973	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr11_-_75236867_75236968	0.0149953	SOX3_SOX2	ENST00000376282.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5 	ENST00000336898.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5
hg19_v2_chr11_-_10562710_10562782	0.0149676	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr15_+_32322685_32322701	0.014935	SOX3_SOX2	ENST00000454250.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal) 	ENST00000306901.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr3_+_156008809_156008839	0.0149161	SOX3_SOX2	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr4_-_103266626_103266647	0.0148904	SOX3_SOX2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr4_+_144258021_144258052	0.0148622	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr12_+_21168630_21168630	0.0148314	SOX3_SOX2	ENST00000421593.2|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr1_-_53018654_53018777	0.0148248	SOX3_SOX2	ENST00000257177.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000355809.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000528642.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000470626.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000371544.3|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr1_+_54411995_54412063	0.0147869	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr3_-_138312971_138313132	0.0147706	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr5_-_137090028_137090075	0.0147618	SOX3_SOX2	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr14_+_101123580_101123695	0.0147436	SOX3_SOX2	ENST00000556697.1|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523 	ENST00000360899.2|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523 	ENST00000553623.1|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523
hg19_v2_chr1_+_26737292_26737322	0.0147322	SOX3_SOX2	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr8_-_124279627_124279627	0.0147049	SOX3_SOX2	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr12_-_56615693_56615758	0.0146935	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr3_-_71294304_71294332	0.0146788	SOX3_SOX2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr7_-_142139783_142139815	0.0146025	SOX3_SOX2	ENST00000390374.3|TRBV7-6|ENSG00000211727.3|T cell receptor beta variable 7-6
hg19_v2_chr5_-_176900610_176900742	0.0144735	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr7_+_150076406_150076456	0.0144415	SOX3_SOX2	ENST00000329630.5|ZNF775|ENSG00000196456.4|zinc finger protein 775
hg19_v2_chr1_-_224033596_224033697	0.0144347	SOX3_SOX2	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chrX_-_77041685_77041716	0.0143762	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr19_+_48773337_48773359	0.0143385	SOX3_SOX2	ENST00000595607.1|ZNF114|ENSG00000178150.4|zinc finger protein 114
hg19_v2_chr10_-_32667660_32667735	0.0142658	SOX3_SOX2	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr19_+_23299777_23299844	0.0142267	SOX3_SOX2	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr19_+_50354393_50354422	0.0141932	SOX3_SOX2	ENST00000391842.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr6_-_2962331_2962391	0.0141743	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr1_-_115300592_115300648	0.0141599	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr4_-_10458982_10459007	0.0141452	SOX3_SOX2	ENST00000326756.3|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr12_-_15942503_15942514	0.0141404	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr16_+_6069586_6069602	0.0141403	SOX3_SOX2	ENST00000547372.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr17_-_42276574_42276742	0.0141375	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr11_-_18548426_18548500	0.014131	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr9_+_136325089_136325144	0.013997	SOX3_SOX2	ENST00000291722.7|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000316948.4|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000540581.1|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1
hg19_v2_chr10_+_114709999_114710031	0.0139592	SOX3_SOX2	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr10_-_123687943_123687997	0.0138901	SOX3_SOX2	ENST00000540606.1|ATE1|ENSG00000107669.13|arginyltransferase 1 	ENST00000455628.1|ATE1|ENSG00000107669.13|arginyltransferase 1
hg19_v2_chr2_+_113816215_113816244	0.0138334	SOX3_SOX2	ENST00000346807.3|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr2_+_169312725_169312810	0.0137454	SOX3_SOX2	ENST00000392687.4|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr13_+_28194873_28194954	0.0137445	SOX3_SOX2	ENST00000302979.3|POLR1D|ENSG00000186184.11|polymerase (RNA) I polypeptide D, 16kDa
hg19_v2_chr7_-_42951509_42951904	0.0136535	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chr8_-_119964434_119964445	0.0136195	SOX3_SOX2	ENST00000297350.4|TNFRSF11B|ENSG00000164761.4|tumor necrosis factor receptor superfamily, member 11b
hg19_v2_chr13_-_36920615_36920659	0.0136189	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr2_-_80531399_80531566	0.0136122	SOX3_SOX2	ENST00000409148.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000415098.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000452811.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1
hg19_v2_chr19_+_21324827_21324855	0.013537	SOX3_SOX2	ENST00000600692.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000599296.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000594425.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000311048.7|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr1_-_11863571_11863603	0.013525	SOX3_SOX2	ENST00000376583.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr12_-_10282742_10282817	0.0135149	SOX3_SOX2	ENST00000298523.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000396484.2|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000310002.4|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr12_-_56120865_56120912	0.0134844	SOX3_SOX2	ENST00000548898.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000552067.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr12_-_10251539_10251560	0.0133838	SOX3_SOX2	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr19_-_12992274_12992332	0.0133426	SOX3_SOX2	ENST00000592506.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal 	ENST00000222219.3|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chrX_+_140968348_140968348	0.0133361	SOX3_SOX2	ENST00000536088.1|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3 	ENST00000443323.2|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3
hg19_v2_chr13_-_41593425_41593480	0.0132198	SOX3_SOX2	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr10_+_11207438_11207455	0.0132011	SOX3_SOX2	ENST00000609692.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000354897.3|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr1_+_6673745_6673830	0.0131711	SOX3_SOX2	ENST00000377648.4|PHF13|ENSG00000116273.5|PHD finger protein 13
hg19_v2_chr19_+_1450112_1450187	0.0131386	SOX3_SOX2	ENST00000590469.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000233607.2|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000238483.4|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000590877.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr7_+_73868220_73868300	0.0130849	SOX3_SOX2	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr3_-_138313161_138313198	0.013036	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr17_-_3337135_3337135	0.0128774	SOX3_SOX2	ENST00000248384.1|OR1E2|ENSG00000127780.3|olfactory receptor, family 1, subfamily E, member 2
hg19_v2_chr4_+_113558612_113558669	0.0128751	SOX3_SOX2	ENST00000505034.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7 	ENST00000324052.6|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr4_-_52904425_52904471	0.0128341	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr5_+_119867159_119867240	0.0128161	SOX3_SOX2	ENST00000505123.1|PRR16|ENSG00000184838.10|proline rich 16
hg19_v2_chr3_-_197025447_197025533	0.0128066	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr13_+_43355683_43355705	0.0127091	SOX3_SOX2	ENST00000537894.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr22_-_22090064_22090127	0.0126967	SOX3_SOX2	ENST00000339468.3|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr19_+_16187816_16187838	0.0126799	SOX3_SOX2	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr20_-_29994007_29994069	0.0126338	SOX3_SOX2	ENST00000376314.2|DEFB121|ENSG00000204548.3|defensin, beta 121
hg19_v2_chr9_-_125693757_125693818	0.0125676	SOX3_SOX2	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr11_-_82997371_82997416	0.0125666	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr1_+_162351503_162351523	0.0125285	SOX3_SOX2	ENST00000458626.2|C1orf226|ENSG00000239887.3|chromosome 1 open reading frame 226
hg19_v2_chr1_+_178482262_178482279	0.0125085	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chrX_+_135579670_135579715	0.0125079	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chrX_-_46404811_46404876	0.0124898	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chr7_+_18535346_18535399	0.0124353	SOX3_SOX2	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr5_-_131347583_131347870	0.0124227	SOX3_SOX2	ENST00000379255.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000430403.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000544770.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379246.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000414078.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000441995.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6
hg19_v2_chr11_+_120081475_120081488	0.012369	SOX3_SOX2	ENST00000328965.4|OAF|ENSG00000184232.4|OAF homolog (Drosophila)
hg19_v2_chr17_-_16472483_16472533	0.012364	SOX3_SOX2	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr3_+_15643476_15643557	0.0122181	SOX3_SOX2	ENST00000436193.1|BTD|ENSG00000169814.8|biotinidase 	ENST00000383778.4|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chrX_-_51812268_51812368	0.0121966	SOX3_SOX2	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr1_-_235292250_235292261	0.0121827	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr4_-_113437328_113437337	0.0121801	SOX3_SOX2	ENST00000313341.3|NEUROG2|ENSG00000178403.3|neurogenin 2
hg19_v2_chr10_+_76585303_76585354	0.0121759	SOX3_SOX2	ENST00000372725.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B
hg19_v2_chr3_-_46904946_46904973	0.0121721	SOX3_SOX2	ENST00000292327.4|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr22_-_41864662_41864729	0.0121451	SOX3_SOX2	ENST00000216252.3|PHF5A|ENSG00000100410.3|PHD finger protein 5A
hg19_v2_chr17_-_10325261_10325267	0.0120511	SOX3_SOX2	ENST00000403437.2|MYH8|ENSG00000133020.4|myosin, heavy chain 8, skeletal muscle, perinatal
hg19_v2_chr11_-_75917569_75917576	0.0120391	SOX3_SOX2	ENST00000322563.3|WNT11|ENSG00000085741.8|wingless-type MMTV integration site family, member 11
hg19_v2_chr3_+_107241882_107241904	0.0119811	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr16_-_28303360_28303393	0.0119523	SOX3_SOX2	ENST00000501520.1|RP11-57A19.2|ENSG00000246465.1|RP11-57A19.2
hg19_v2_chr2_-_3521518_3521518	0.0119468	SOX3_SOX2	ENST00000382093.5|ADI1|ENSG00000182551.9|acireductone dioxygenase 1
hg19_v2_chr14_+_20923350_20923424	0.0119331	SOX3_SOX2	ENST00000555414.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000216714.3|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553681.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557344.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000398030.4|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557181.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000555839.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553368.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000556054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557592.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557150.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1
hg19_v2_chr5_-_171881362_171881397	0.0119194	SOX3_SOX2	ENST00000519643.1|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr4_+_144257915_144258009	0.0117933	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr2_-_9771075_9771153	0.0117898	SOX3_SOX2	ENST00000446619.1|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 	ENST00000238081.3|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr15_+_32322709_32322759	0.0117717	SOX3_SOX2	ENST00000455693.2|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr2_-_208489707_208490022	0.011744	SOX3_SOX2	ENST00000448007.2|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000432416.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000411432.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chr14_-_89021077_89021230	0.0117292	SOX3_SOX2	ENST00000556564.1|PTPN21|ENSG00000070778.8|protein tyrosine phosphatase, non-receptor type 21
hg19_v2_chr9_-_27297126_27297140	0.0117211	SOX3_SOX2	ENST00000380031.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000537675.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000380032.3|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated
hg19_v2_chr10_+_106028923_106028956	0.0117142	SOX3_SOX2	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr16_-_20339123_20339130	0.0116772	SOX3_SOX2	ENST00000381360.5|GP2|ENSG00000169347.12|glycoprotein 2 (zymogen granule membrane)
hg19_v2_chr19_+_21106081_21106207	0.0116262	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr14_+_54976546_54976602	0.0115395	SOX3_SOX2	ENST00000216420.7|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr3_-_141747459_141747507	0.0114392	SOX3_SOX2	ENST00000477292.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000478006.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000495310.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000486111.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr4_+_88571429_88571459	0.0114257	SOX3_SOX2	ENST00000339673.6|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1 	ENST00000282479.7|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1
hg19_v2_chr12_-_6716569_6716642	0.0113447	SOX3_SOX2	ENST00000544040.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000545942.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr1_-_49242553_49242590	0.011296	SOX3_SOX2	ENST00000371833.3|BEND5|ENSG00000162373.8|BEN domain containing 5
hg19_v2_chr4_-_15656923_15657035	0.0112872	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr4_+_88343952_88343970	0.0112346	SOX3_SOX2	ENST00000440591.2|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr19_-_44439387_44439419	0.0112136	SOX3_SOX2	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chrX_+_51927919_51927991	0.0112102	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr17_+_25621102_25621157	0.0111769	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr6_-_32374900_32374905	0.0111405	SOX3_SOX2	ENST00000374995.3|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000374993.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000414363.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000540315.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000544175.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000429232.2|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000454136.3|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000446536.2|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated)
hg19_v2_chr12_+_124997766_124997772	0.0111141	SOX3_SOX2	ENST00000543970.1|RP11-83B20.1|ENSG00000214650.2|RP11-83B20.1
hg19_v2_chr10_-_123274693_123274769	0.0110591	SOX3_SOX2	ENST00000429361.1|FGFR2|ENSG00000066468.16|fibroblast growth factor receptor 2
hg19_v2_chr11_-_64545941_64545958	0.0110108	SOX3_SOX2	ENST00000377387.1|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr1_-_153029980_153030013	0.0109411	SOX3_SOX2	ENST00000392653.2|SPRR2A|ENSG00000241794.1|small proline-rich protein 2A
hg19_v2_chrX_+_115301975_115302005	0.0109397	SOX3_SOX2	ENST00000371906.4|AGTR2|ENSG00000180772.6|angiotensin II receptor, type 2
hg19_v2_chrX_-_24690771_24690794	0.0108535	SOX3_SOX2	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr10_+_47894572_47894572	0.0108037	SOX3_SOX2	ENST00000355876.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr1_-_23670813_23670816	0.0107874	SOX3_SOX2	ENST00000374612.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr14_-_69619689_69619757	0.0107654	SOX3_SOX2	ENST00000389997.6|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000557386.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000554681.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr3_-_88108212_88108223	0.0107427	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr3_+_15643245_15643318	0.0107084	SOX3_SOX2	ENST00000303498.5|BTD|ENSG00000169814.8|biotinidase 	ENST00000437172.1|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr8_+_95835438_95835537	0.0106939	SOX3_SOX2	ENST00000521860.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519457.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519053.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000523731.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000447247.1|INTS8|ENSG00000164941.9|integrator complex subunit 8
hg19_v2_chr2_-_216257849_216257907	0.0106339	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr12_-_15942309_15942330	0.0106222	SOX3_SOX2	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr18_-_74207146_74207183	0.0105362	SOX3_SOX2	ENST00000443185.2|ZNF516|ENSG00000101493.6|zinc finger protein 516
hg19_v2_chr6_-_144385698_144385742	0.0104752	SOX3_SOX2	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr16_-_20702578_20702578	0.0104587	SOX3_SOX2	ENST00000307493.4|ACSM1|ENSG00000166743.5|acyl-CoA synthetase medium-chain family member 1 	ENST00000219151.4|ACSM1|ENSG00000166743.5|acyl-CoA synthetase medium-chain family member 1
hg19_v2_chr11_+_34645791_34645836	0.0103095	SOX3_SOX2	ENST00000529527.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000531728.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000525253.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr12_-_6716534_6716557	0.0102987	SOX3_SOX2	ENST00000544484.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000309577.6|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000357008.2|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr2_+_162101247_162101266	0.0102352	SOX3_SOX2	ENST00000439050.1|AC009299.3|ENSG00000227403.1|AC009299.3	ENST00000436506.1|AC009299.3|ENSG00000227403.1|AC009299.3
hg19_v2_chr8_-_16043780_16043783	0.0102251	SOX3_SOX2	ENST00000445506.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr14_-_35099377_35099389	0.0101527	SOX3_SOX2	ENST00000362031.4|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr12_-_114211474_114211499	0.0101462	SOX3_SOX2	ENST00000550905.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000547963.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr7_+_87257701_87257770	0.00998859	SOX3_SOX2	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr20_+_55099542_55099542	0.00989919	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr11_-_3400442_3400453	0.00983286	SOX3_SOX2	ENST00000429541.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000532539.1|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr3_-_169530574_169530774	0.00977645	SOX3_SOX2	ENST00000316515.7|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522830.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522526.2|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr8_-_7332604_7332604	0.00969574	SOX3_SOX2	ENST00000316169.2|DEFB104B|ENSG00000177023.2|defensin, beta 104B
hg19_v2_chr4_-_144940477_144940541	0.00964393	SOX3_SOX2	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr1_+_32666188_32666274	0.00962021	SOX3_SOX2	ENST00000421922.2|CCDC28B|ENSG00000160050.10|coiled-coil domain containing 28B
hg19_v2_chr2_+_113816685_113816777	0.00958233	SOX3_SOX2	ENST00000393200.2|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr11_+_86511549_86511563	0.00956624	SOX3_SOX2	ENST00000533902.2|PRSS23|ENSG00000150687.7|protease, serine, 23
hg19_v2_chr6_+_135502501_135502652	0.00952405	SOX3_SOX2	ENST00000527615.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000420123.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000525369.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000528774.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534121.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534044.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000533624.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr20_+_55108302_55108302	0.00951863	SOX3_SOX2	ENST00000371325.1|FAM209B|ENSG00000213714.1|family with sequence similarity 209, member B
hg19_v2_chr2_-_74780176_74780259	0.00949282	SOX3_SOX2	ENST00000409549.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr15_-_40331356_40331389	0.009447	SOX3_SOX2	ENST00000560773.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein) 	ENST00000267884.6|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr3_-_57583130_57583152	0.0094386	SOX3_SOX2	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr12_-_104531945_104531996	0.00942439	SOX3_SOX2	ENST00000551446.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr20_+_36149602_36149665	0.00939699	SOX3_SOX2	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr3_-_48601206_48601222	0.00937081	SOX3_SOX2	ENST00000273610.3|UCN2|ENSG00000145040.3|urocortin 2
hg19_v2_chr1_+_107599267_107599340	0.00932993	SOX3_SOX2	ENST00000361318.5|PRMT6|ENSG00000198890.6|protein arginine methyltransferase 6 	ENST00000370078.1|PRMT6|ENSG00000198890.6|protein arginine methyltransferase 6
hg19_v2_chr6_-_112194484_112194662	0.00926793	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr7_+_44788146_44788181	0.00919556	SOX3_SOX2	ENST00000413916.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr16_+_67876180_67876242	0.00918698	SOX3_SOX2	ENST00000303596.1|THAP11|ENSG00000168286.1|THAP domain containing 11
hg19_v2_chr19_+_32836499_32836625	0.00912046	SOX3_SOX2	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr13_-_99404875_99404942	0.0091049	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chr2_+_33172012_33172039	0.00907809	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr6_-_42981651_42981706	0.00907393	SOX3_SOX2	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr7_+_99775366_99775518	0.00906473	SOX3_SOX2	ENST00000394018.2|STAG3|ENSG00000066923.13|stromal antigen 3 	ENST00000416412.1|STAG3|ENSG00000066923.13|stromal antigen 3
hg19_v2_chr12_+_58120044_58120095	0.00898975	SOX3_SOX2	ENST00000542466.2|AGAP2-AS1|ENSG00000255737.2|AGAP2 antisense RNA 1
hg19_v2_chr1_+_17866290_17866330	0.00895223	SOX3_SOX2	ENST00000361221.3|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENST00000452522.1|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENST00000434513.1|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like
hg19_v2_chrX_+_114827818_114827842	0.00893117	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr18_+_45778672_45778672	0.00889171	SOX3_SOX2	ENST00000600091.1|AC091150.1|ENSG00000268960.1|HCG1818186; Uncharacterized protein
hg19_v2_chr16_-_2837949_2837949	0.00884824	SOX3_SOX2	ENST00000570702.1|PRSS33|ENSG00000103355.8|protease, serine, 33
hg19_v2_chr2_+_171571827_171571861	0.00882743	SOX3_SOX2	ENST00000375281.3|SP5|ENSG00000204335.3|Sp5 transcription factor
hg19_v2_chr13_-_95131923_95131944	0.00880895	SOX3_SOX2	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr19_-_20844368_20844407	0.00879507	SOX3_SOX2	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr7_-_99679324_99679371	0.00875203	SOX3_SOX2	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr5_+_49962495_49962577	0.00874568	SOX3_SOX2	ENST00000515175.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr16_-_8962853_8962878	0.00869941	SOX3_SOX2	ENST00000565287.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa 	ENST00000311052.5|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr17_+_77018896_77018919	0.00869407	SOX3_SOX2	ENST00000578229.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr16_+_28722684_28722807	0.00867634	SOX3_SOX2	ENST00000331666.6|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000395587.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000569690.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000564243.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C
hg19_v2_chr12_+_85673868_85673885	0.00862692	SOX3_SOX2	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr5_-_95158375_95158485	0.00854688	SOX3_SOX2	ENST00000512469.2|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000379979.4|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000505427.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000508780.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr1_-_156051789_156051838	0.00850136	SOX3_SOX2	ENST00000532414.2|MEX3A|ENSG00000254726.2|mex-3 RNA binding family member A
hg19_v2_chr8_+_9009202_9009252	0.00846948	SOX3_SOX2	ENST00000518496.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr7_-_150779995_150780319	0.00844107	SOX3_SOX2	ENST00000462940.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000492838.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000392818.3|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000488752.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000476627.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr10_+_11206925_11206993	0.00843501	SOX3_SOX2	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr17_-_49337392_49337465	0.00840172	SOX3_SOX2	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr7_-_150780609_150780633	0.00832888	SOX3_SOX2	ENST00000297533.4|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr14_-_35099315_35099369	0.00832258	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr11_+_61129456_61129527	0.00831769	SOX3_SOX2	ENST00000278826.6|TMEM138|ENSG00000149483.7|transmembrane protein 138
hg19_v2_chr8_+_85095769_85095793	0.00825271	SOX3_SOX2	ENST00000518566.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr19_-_40324255_40324296	0.00821272	SOX3_SOX2	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr5_+_79615790_79615827	0.00820255	SOX3_SOX2	ENST00000296739.4|SPZ1|ENSG00000164299.5|spermatogenic leucine zipper 1
hg19_v2_chr14_+_23791159_23791231	0.00818064	SOX3_SOX2	ENST00000557702.1|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr3_-_121740969_121741106	0.00808841	SOX3_SOX2	ENST00000393631.1|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000273691.3|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000344209.5|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1
hg19_v2_chr8_-_6420759_6420775	0.00806927	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr7_+_11013491_11013553	0.00785153	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr17_-_49198216_49198236	0.00780754	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr10_-_735553_735683	0.00776859	SOX3_SOX2	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr3_-_93781750_93781831	0.00776675	SOX3_SOX2	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr1_-_116311402_116311413	0.00775806	SOX3_SOX2	ENST00000261448.5|CASQ2|ENSG00000118729.10|calsequestrin 2 (cardiac muscle)
hg19_v2_chr4_+_90033968_90033968	0.00773883	SOX3_SOX2	ENST00000317005.2|TIGD2|ENSG00000180346.2|tigger transposable element derived 2
hg19_v2_chr12_-_6982442_6982500	0.00770538	SOX3_SOX2	ENST00000523102.1|SPSB2|ENSG00000111671.5|splA/ryanodine receptor domain and SOCS box containing 2 	ENST00000524270.1|SPSB2|ENSG00000111671.5|splA/ryanodine receptor domain and SOCS box containing 2 	ENST00000519357.1|SPSB2|ENSG00000111671.5|splA/ryanodine receptor domain and SOCS box containing 2
hg19_v2_chr16_+_19222479_19222531	0.00768195	SOX3_SOX2	ENST00000568433.1|SYT17|ENSG00000103528.12|synaptotagmin XVII
hg19_v2_chr22_-_44894178_44894203	0.00748826	SOX3_SOX2	ENST00000341255.3|LDOC1L|ENSG00000188636.3|leucine zipper, down-regulated in cancer 1-like
hg19_v2_chr4_+_6717842_6717937	0.00744679	SOX3_SOX2	ENST00000320776.3|BLOC1S4|ENSG00000186222.3|biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino
hg19_v2_chr4_+_2819883_2819948	0.00742017	SOX3_SOX2	ENST00000511747.1|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2 	ENST00000503393.2|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2
hg19_v2_chr7_-_103629963_103630056	0.0073824	SOX3_SOX2	ENST00000428762.1|RELN|ENSG00000189056.9|reelin 	ENST00000343529.5|RELN|ENSG00000189056.9|reelin 	ENST00000424685.2|RELN|ENSG00000189056.9|reelin
hg19_v2_chr15_+_74908147_74908220	0.00736016	SOX3_SOX2	ENST00000568139.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000563297.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000568488.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000352989.5|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000348245.3|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chr10_+_118350522_118350642	0.00735005	SOX3_SOX2	ENST00000530319.1|PNLIPRP1|ENSG00000187021.10|pancreatic lipase-related protein 1 	ENST00000527980.1|PNLIPRP1|ENSG00000187021.10|pancreatic lipase-related protein 1 	ENST00000471549.1|PNLIPRP1|ENSG00000187021.10|pancreatic lipase-related protein 1 	ENST00000534537.1|PNLIPRP1|ENSG00000187021.10|pancreatic lipase-related protein 1
hg19_v2_chr7_+_95115210_95115217	0.00733844	SOX3_SOX2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr5_-_134871639_134871660	0.00715605	SOX3_SOX2	ENST00000314744.4|NEUROG1|ENSG00000181965.4|neurogenin 1
hg19_v2_chr17_-_39677971_39678038	0.00714256	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr11_+_77184416_77184416	0.00710891	SOX3_SOX2	ENST00000598970.1|DKFZP434E1119|ENSG00000268635.1|DKFZP434E1119
hg19_v2_chr2_-_27579842_27579907	0.00709613	SOX3_SOX2	ENST00000423998.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa 	ENST00000264720.3|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr1_-_116383322_116383362	0.00704788	SOX3_SOX2	ENST00000429731.1|NHLH2|ENSG00000177551.5|nescient helix loop helix 2
hg19_v2_chr17_+_79761997_79762034	0.00703347	SOX3_SOX2	ENST00000400723.3|GCGR|ENSG00000215644.5|glucagon receptor 	ENST00000570996.1|GCGR|ENSG00000215644.5|glucagon receptor
hg19_v2_chr1_+_31886653_31886721	0.00700545	SOX3_SOX2	ENST00000536384.1|SERINC2|ENSG00000168528.7|serine incorporator 2
hg19_v2_chr2_+_239756671_239756732	0.00699053	SOX3_SOX2	ENST00000448943.2|TWIST2|ENSG00000233608.2|twist family bHLH transcription factor 2
hg19_v2_chr2_-_208031943_208031991	0.00681642	SOX3_SOX2	ENST00000421199.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous) 	ENST00000457962.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr6_-_137366096_137366111	0.00680855	SOX3_SOX2	ENST00000316649.5|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha 	ENST00000367746.3|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr19_+_52264449_52264465	0.00675851	SOX3_SOX2	ENST00000599326.1|FPR2|ENSG00000171049.8|formyl peptide receptor 2 	ENST00000598953.1|FPR2|ENSG00000171049.8|formyl peptide receptor 2
hg19_v2_chr5_+_179921344_179921423	0.00672365	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr16_-_279405_279462	0.00672018	SOX3_SOX2	ENST00000430864.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000293872.8|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000337351.4|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000397783.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae)
hg19_v2_chr19_-_51141196_51141302	0.00670844	SOX3_SOX2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr6_-_41040195_41040263	0.00665329	SOX3_SOX2	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr1_+_161129254_161129327	0.00662269	SOX3_SOX2	ENST00000368002.3|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21 	ENST00000289865.8|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21 	ENST00000479344.1|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21 	ENST00000368001.1|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21
hg19_v2_chr2_+_71127699_71127744	0.00659323	SOX3_SOX2	ENST00000234392.2|VAX2|ENSG00000116035.2|ventral anterior homeobox 2
hg19_v2_chr15_-_101792137_101792159	0.0065443	SOX3_SOX2	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr6_-_31632962_31632997	0.00651833	SOX3_SOX2	ENST00000456540.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1 	ENST00000445768.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1
hg19_v2_chr3_-_148804275_148804346	0.00650771	SOX3_SOX2	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr14_+_74815116_74815202	0.00642504	SOX3_SOX2	ENST00000256362.4|VRTN|ENSG00000133980.4|vertebrae development associated
hg19_v2_chr6_+_43265992_43266003	0.0063918	SOX3_SOX2	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr7_-_107643674_107643700	0.00634901	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr6_-_111136513_111136525	0.00632719	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr11_+_34643600_34643750	0.00628965	SOX3_SOX2	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr15_-_79103757_79103815	0.00624317	SOX3_SOX2	ENST00000388820.4|ADAMTS7|ENSG00000136378.10|ADAM metallopeptidase with thrombospondin type 1 motif, 7
hg19_v2_chr9_-_43630730_43630730	0.00622883	SOX3_SOX2	ENST00000332857.6|SPATA31A6|ENSG00000185775.9|SPATA31 subfamily A, member 6
hg19_v2_chr4_-_175204765_175204843	0.00621115	SOX3_SOX2	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr1_+_100818156_100818210	0.00620459	SOX3_SOX2	ENST00000336454.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chrX_-_85302531_85302570	0.00618611	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr11_-_84634217_84634229	0.00617262	SOX3_SOX2	ENST00000524982.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr19_+_52839515_52839572	0.00617152	SOX3_SOX2	ENST00000403906.3|ZNF610|ENSG00000167554.10|zinc finger protein 610 	ENST00000601151.1|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr17_-_76921459_76921478	0.006162	SOX3_SOX2	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr11_+_114271314_114271365	0.00613442	SOX3_SOX2	ENST00000541475.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr17_+_61851504_61851570	0.00613055	SOX3_SOX2	ENST00000359353.5|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42 	ENST00000389924.2|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42
hg19_v2_chr17_-_2966901_2966901	0.00610761	SOX3_SOX2	ENST00000575751.1|OR1D5|ENSG00000262628.1|olfactory receptor, family 1, subfamily D, member 5
hg19_v2_chr2_+_208394658_208394692	0.00610494	SOX3_SOX2	ENST00000421139.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr3_+_186435137_186435158	0.00602117	SOX3_SOX2	ENST00000447445.1|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr1_+_244998918_244998975	0.00601874	SOX3_SOX2	ENST00000366528.3|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr6_-_35656685_35656701	0.00597648	SOX3_SOX2	ENST00000539068.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000540787.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr19_-_47349395_47349412	0.00594627	SOX3_SOX2	ENST00000597020.1|AP2S1|ENSG00000042753.7|adaptor-related protein complex 2, sigma 1 subunit
hg19_v2_chr22_+_30792980_30793047	0.00591446	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr1_-_6545502_6545548	0.00583284	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr3_+_169629354_169629372	0.00582138	SOX3_SOX2	ENST00000428432.2|SAMD7|ENSG00000187033.5|sterile alpha motif domain containing 7 	ENST00000335556.3|SAMD7|ENSG00000187033.5|sterile alpha motif domain containing 7
hg19_v2_chr20_-_50479451_50479469	0.00580596	SOX3_SOX2	ENST00000438154.1|RP5-1112F19.2|ENSG00000227964.1|RP5-1112F19.2
hg19_v2_chr21_-_34144157_34144175	0.00574134	SOX3_SOX2	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr12_+_19358228_19358259	0.00569796	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr6_-_35464727_35464738	0.00562223	SOX3_SOX2	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr7_-_105029812_105029860	0.00559219	SOX3_SOX2	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr15_+_80215477_80215546	0.00558609	SOX3_SOX2	ENST00000542003.1|C15ORF37|ENSG00000257028.1|C15orf37 protein; Uncharacterized protein
hg19_v2_chr12_+_99038998_99039078	0.00554758	SOX3_SOX2	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr8_+_133787586_133787673	0.00551147	SOX3_SOX2	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chrX_+_72062617_72062617	0.00549589	SOX3_SOX2	ENST00000440247.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr6_-_30815936_30816035	0.00546023	SOX3_SOX2	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr4_-_125633876_125633897	0.00544717	SOX3_SOX2	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr6_+_28193037_28193117	0.00542487	SOX3_SOX2	ENST00000531981.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000425468.2|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000252207.5|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000531979.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000527436.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9
hg19_v2_chr16_-_75299884_75299919	0.00542395	SOX3_SOX2	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr6_-_146057144_146057164	0.00541598	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chr19_-_18385221_18385245	0.00541052	SOX3_SOX2	ENST00000595654.2|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000593659.1|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000599528.1|KIAA1683|ENSG00000130518.12|KIAA1683
hg19_v2_chr2_+_203241531_203241659	0.00540944	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr11_+_76092353_76092400	0.00537971	SOX3_SOX2	ENST00000530460.1|RP11-111M22.2|ENSG00000179240.4|Homo sapiens putative uncharacterized protein FLJ37770-like (LOC100506127), mRNA. 	ENST00000321844.4|RP11-111M22.2|ENSG00000179240.4|Homo sapiens putative uncharacterized protein FLJ37770-like (LOC100506127), mRNA.
hg19_v2_chr16_+_30662184_30662206	0.00537641	SOX3_SOX2	ENST00000300835.4|PRR14|ENSG00000156858.7|proline rich 14
hg19_v2_chr12_+_6982725_6982736	0.00524769	SOX3_SOX2	ENST00000433346.1|LRRC23|ENSG00000010626.10|leucine rich repeat containing 23
hg19_v2_chrX_-_101718085_101718195	0.00524275	SOX3_SOX2	ENST00000372750.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000372752.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B
hg19_v2_chr13_+_113656047_113656068	0.00523623	SOX3_SOX2	ENST00000375597.4|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr9_-_115774453_115774507	0.00510526	SOX3_SOX2	ENST00000427548.1|ZNF883|ENSG00000228623.2|zinc finger protein 883
hg19_v2_chr3_+_57094469_57094469	0.0051013	SOX3_SOX2	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr12_-_56120838_56120848	0.00495208	SOX3_SOX2	ENST00000548160.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr21_-_31869451_31869451	0.00486775	SOX3_SOX2	ENST00000334058.2|KRTAP19-4|ENSG00000186967.6|keratin associated protein 19-4
hg19_v2_chr6_+_42531798_42531810	0.00481798	SOX3_SOX2	ENST00000372903.2|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372899.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372901.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chrX_+_101478829_101478939	0.00479288	SOX3_SOX2	ENST00000372763.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000372758.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2
hg19_v2_chr6_+_123317116_123317260	0.00472658	SOX3_SOX2	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr2_-_106015491_106015518	0.00470246	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr21_-_31859755_31859755	0.00469779	SOX3_SOX2	ENST00000334055.3|KRTAP19-2|ENSG00000186965.3|keratin associated protein 19-2
hg19_v2_chr9_-_35111570_35111600	0.00467735	SOX3_SOX2	ENST00000378561.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000603301.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr19_+_52839490_52839508	0.0045944	SOX3_SOX2	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chrY_+_15016013_15016029	0.00446936	SOX3_SOX2	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr12_-_111806892_111806925	0.0044531	SOX3_SOX2	ENST00000547710.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000549321.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000361483.3|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000392658.5|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A
hg19_v2_chr4_+_159690218_159690290	0.00438758	SOX3_SOX2	ENST00000264433.6|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr6_-_107436473_107436543	0.00437872	SOX3_SOX2	ENST00000369042.1|BEND3|ENSG00000178409.9|BEN domain containing 3
hg19_v2_chr9_+_6716478_6716551	0.00434968	SOX3_SOX2	ENST00000452643.1|RP11-390F4.3|ENSG00000225489.2|RP11-390F4.3
hg19_v2_chr1_-_150602035_150602095	0.0043349	SOX3_SOX2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr6_-_49834240_49834253	0.00432651	SOX3_SOX2	ENST00000335847.4|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr11_-_111649015_111649030	0.0043048	SOX3_SOX2	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr1_+_93544821_93544868	0.00429591	SOX3_SOX2	ENST00000370303.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr13_+_76334567_76334582	0.00428657	SOX3_SOX2	ENST00000321797.8|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr8_+_9009296_9009313	0.00424038	SOX3_SOX2	ENST00000521718.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr3_-_12200851_12200885	0.00423504	SOX3_SOX2	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr6_-_133055815_133055834	0.00415519	SOX3_SOX2	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr2_-_9770706_9770753	0.00414353	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr5_+_43603229_43603356	0.00412152	SOX3_SOX2	ENST00000344920.4|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512996.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr5_+_56205081_56205092	0.00411778	SOX3_SOX2	ENST00000285947.2|SETD9|ENSG00000155542.7|SET domain containing 9 	ENST00000541720.1|SETD9|ENSG00000155542.7|SET domain containing 9
hg19_v2_chr19_-_17375541_17375605	0.00403138	SOX3_SOX2	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr6_+_88054530_88054567	0.00401208	SOX3_SOX2	ENST00000388923.4|C6orf163|ENSG00000203872.6|chromosome 6 open reading frame 163
hg19_v2_chr1_-_65432171_65432252	0.00400153	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr14_+_62584197_62584208	0.00385263	SOX3_SOX2	ENST00000334389.4|LINC00643|ENSG00000186369.5|long intergenic non-protein coding RNA 643
hg19_v2_chr14_+_23846328_23846461	0.00377526	SOX3_SOX2	ENST00000382809.2|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr19_+_36705504_36705644	0.00375448	SOX3_SOX2	ENST00000456324.1|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr3_+_130612803_130612877	0.0037463	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chrX_+_92929192_92929214	0.00372472	SOX3_SOX2	ENST00000332647.4|FAM133A|ENSG00000179083.5|family with sequence similarity 133, member A
hg19_v2_chr9_-_35115836_35115893	0.00370568	SOX3_SOX2	ENST00000378566.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000378554.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000322813.5|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr3_-_139258521_139258671	0.00363268	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr15_+_41136216_41136252	0.00349268	SOX3_SOX2	ENST00000562057.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1 	ENST00000344051.4|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr6_-_26235206_26235224	0.0034174	SOX3_SOX2	ENST00000244534.5|HIST1H1D|ENSG00000124575.5|histone cluster 1, H1d
hg19_v2_chr3_-_188665428_188665478	0.00341728	SOX3_SOX2	ENST00000444488.1|TPRG1-AS1|ENSG00000234076.1|TPRG1 antisense RNA 1
hg19_v2_chr3_+_88108381_88108450	0.00327234	SOX3_SOX2	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chrX_+_46306714_46306741	0.00325672	SOX3_SOX2	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr6_-_49834209_49834220	0.00319638	SOX3_SOX2	ENST00000507853.1|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr17_+_8213590_8213603	0.00317727	SOX3_SOX2	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr7_-_7575477_7575491	0.00311766	SOX3_SOX2	ENST00000399429.3|COL28A1|ENSG00000215018.5|collagen, type XXVIII, alpha 1
hg19_v2_chr6_+_119215308_119215391	0.00310558	SOX3_SOX2	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr7_-_111202511_111202573	0.00302053	SOX3_SOX2	ENST00000452895.1|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000452753.1|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000331762.3|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr14_+_57857262_57857334	0.00294506	SOX3_SOX2	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr11_-_75062829_75062951	0.00293522	SOX3_SOX2	ENST00000393505.4|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr14_-_65569186_65569243	0.00292584	SOX3_SOX2	ENST00000555932.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358664.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000284165.6|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358402.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000246163.2|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556979.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000555667.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000557746.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556443.1|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr18_+_46065393_46065444	0.00282519	SOX3_SOX2	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr20_-_43150601_43150751	0.00282047	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr10_-_118429461_118429484	0.00279351	SOX3_SOX2	ENST00000588184.1|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82 	ENST00000369210.3|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82
hg19_v2_chr6_-_24936170_24936199	0.00279301	SOX3_SOX2	ENST00000538035.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr10_+_47894023_47894023	0.00276361	SOX3_SOX2	ENST00000358474.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr3_-_69101461_69101494	0.00275954	SOX3_SOX2	ENST00000543976.1|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr19_-_12992244_12992272	0.00274967	SOX3_SOX2	ENST00000538460.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chrX_-_74145273_74145319	0.00266264	SOX3_SOX2	ENST00000055682.6|KIAA2022|ENSG00000050030.9|KIAA2022
hg19_v2_chr1_-_26233423_26233482	0.00262332	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr16_+_33629600_33629681	0.00261115	SOX3_SOX2	ENST00000562905.2|IGHV3OR16-13|ENSG00000271178.1|immunoglobulin heavy variable 3/OR16-13 (non-functional)
hg19_v2_chr11_-_57417405_57417423	0.00259335	SOX3_SOX2	ENST00000524669.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila) 	ENST00000300022.3|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr16_+_30662360_30662511	0.00257816	SOX3_SOX2	ENST00000542965.2|PRR14|ENSG00000156858.7|proline rich 14
hg19_v2_chr2_-_232329186_232329305	0.00254336	SOX3_SOX2	ENST00000322723.4|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr13_+_103451548_103451561	0.00248675	SOX3_SOX2	ENST00000419638.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr1_+_153004800_153004822	0.00247696	SOX3_SOX2	ENST00000392661.3|SPRR1B|ENSG00000169469.7|small proline-rich protein 1B
hg19_v2_chr21_+_33784670_33784696	0.00245787	SOX3_SOX2	ENST00000300255.2|EVA1C|ENSG00000166979.8|eva-1 homolog C (C. elegans)
hg19_v2_chr1_+_156589051_156589089	0.0024211	SOX3_SOX2	ENST00000255039.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr11_+_125496124_125496344	0.00241676	SOX3_SOX2	ENST00000533778.2|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000534070.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr17_-_46623441_46623441	0.00234949	SOX3_SOX2	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr1_+_955448_955508	0.00228101	SOX3_SOX2	ENST00000379370.2|AGRN|ENSG00000188157.9|agrin
hg19_v2_chrX_-_24665208_24665275	0.00224876	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr17_-_27038063_27038117	0.00222656	SOX3_SOX2	ENST00000439862.3|PROCA1|ENSG00000167525.9|protein interacting with cyclin A1
hg19_v2_chr2_+_69240302_69240332	0.00216628	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr14_+_96968707_96968788	0.00214508	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr9_-_34612077_34612125	0.00214443	SOX3_SOX2	ENST00000378959.4|RPP25L|ENSG00000164967.5|ribonuclease P/MRP 25kDa subunit-like 	ENST00000297613.4|RPP25L|ENSG00000164967.5|ribonuclease P/MRP 25kDa subunit-like
hg19_v2_chr10_+_93683519_93683594	0.00211401	SOX3_SOX2	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr3_-_69101413_69101457	0.00202372	SOX3_SOX2	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr15_-_40331115_40331251	0.00193071	SOX3_SOX2	ENST00000558720.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr20_-_45985464_45985567	0.00178724	SOX3_SOX2	ENST00000458360.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000262975.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr10_+_73724123_73724206	0.0017843	SOX3_SOX2	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr19_+_15052301_15052301	0.00175828	SOX3_SOX2	ENST00000248072.3|OR7C2|ENSG00000127529.7|olfactory receptor, family 7, subfamily C, member 2
hg19_v2_chr12_+_49297887_49297898	0.00174177	SOX3_SOX2	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr16_+_1359511_1359804	0.00172109	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chr3_-_123680246_123680264	0.00168142	SOX3_SOX2	ENST00000488653.2|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr17_-_8079632_8079639	0.00163849	SOX3_SOX2	ENST00000431792.2|TMEM107|ENSG00000179029.10|transmembrane protein 107
hg19_v2_chr1_-_23670752_23670803	0.0016086	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chrX_-_71792477_71792720	0.00155364	SOX3_SOX2	ENST00000421523.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000415409.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373559.4|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373556.3|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373560.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373583.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000429103.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373571.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373554.1|HDAC8|ENSG00000147099.15|histone deacetylase 8
hg19_v2_chr17_+_16284604_16284661	0.00155026	SOX3_SOX2	ENST00000395839.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000395837.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr6_-_30654977_30655009	0.00146666	SOX3_SOX2	ENST00000399199.3|PPP1R18|ENSG00000146112.7|protein phosphatase 1, regulatory subunit 18
hg19_v2_chr12_+_101188718_101188745	0.00146556	SOX3_SOX2	ENST00000299222.9|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392977.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr5_+_125758813_125758845	0.00146033	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr11_-_36310958_36310999	0.00144431	SOX3_SOX2	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr6_+_28109703_28109716	0.00144028	SOX3_SOX2	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr7_-_76829125_76829143	0.0012833	SOX3_SOX2	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr17_-_44270270_44270337	0.00125322	SOX3_SOX2	ENST00000572904.1|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr19_+_45754505_45754577	0.00123451	SOX3_SOX2	ENST00000262891.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4 	ENST00000300843.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4
hg19_v2_chr4_-_83483395_83483510	0.00121226	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr6_+_36410762_36410858	0.00117026	SOX3_SOX2	ENST00000483557.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000498267.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000544295.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000449081.2|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000536244.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000460983.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20
hg19_v2_chr1_-_201123546_201123581	0.00114651	SOX3_SOX2	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr1_-_193075180_193075244	0.00106422	SOX3_SOX2	ENST00000367440.3|GLRX2|ENSG00000023572.4|glutaredoxin 2
hg19_v2_chr4_-_164534657_164534701	0.00103943	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr5_+_76011868_76012005	0.00100416	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr9_+_112403059_112403079	0.000967509	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr9_-_35111420_35111455	0.0009618	SOX3_SOX2	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr1_-_68698222_68698266	0.000951035	SOX3_SOX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr17_+_31255165_31255228	0.000924171	SOX3_SOX2	ENST00000578289.1|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000439138.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr21_-_31538971_31538971	0.000887713	SOX3_SOX2	ENST00000286808.3|CLDN17|ENSG00000156282.3|claudin 17
hg19_v2_chr20_+_3870024_3870072	0.000842742	SOX3_SOX2	ENST00000610179.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chrX_+_135579238_135579416	0.000842073	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr16_-_46864955_46864980	0.000744316	SOX3_SOX2	ENST00000565112.1|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr9_-_136933134_136933154	0.000669637	SOX3_SOX2	ENST00000303407.7|BRD3|ENSG00000169925.12|bromodomain containing 3
hg19_v2_chr5_+_128795958_128796012	0.000599205	SOX3_SOX2	ENST00000274487.4|ADAMTS19|ENSG00000145808.4|ADAM metallopeptidase with thrombospondin type 1 motif, 19
hg19_v2_chr14_-_23451467_23451713	0.000572448	SOX3_SOX2	ENST00000555074.1|RP11-298I3.5|ENSG00000259132.1|RP11-298I3.5	ENST00000361265.4|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr6_-_42713792_42713847	0.000571525	SOX3_SOX2	ENST00000372876.1|TBCC|ENSG00000124659.5|tubulin folding cofactor C
hg19_v2_chr19_+_52772832_52772861	0.000522248	SOX3_SOX2	ENST00000593703.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000601711.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000599581.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr13_-_74708372_74708409	0.00051232	SOX3_SOX2	ENST00000377666.4|KLF12|ENSG00000118922.12|Kruppel-like factor 12
hg19_v2_chr8_-_65711310_65711324	0.000503497	SOX3_SOX2	ENST00000310193.3|CYP7B1|ENSG00000172817.3|cytochrome P450, family 7, subfamily B, polypeptide 1
hg19_v2_chrX_+_107069063_107069123	0.000483637	SOX3_SOX2	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr1_-_21113105_21113186	0.000453278	SOX3_SOX2	ENST00000375000.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000419490.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000414993.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000443615.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000312239.5|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3
hg19_v2_chr5_+_140557371_140557371	0.000415239	SOX3_SOX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr19_-_37019562_37019593	0.000369251	SOX3_SOX2	ENST00000523638.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr12_-_81331460_81331505	0.000308012	SOX3_SOX2	ENST00000549417.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr14_+_96968802_96968895	0.000306049	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr19_-_23433144_23433204	0.000299791	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr14_+_64971292_64971415	0.000180873	SOX3_SOX2	ENST00000358738.3|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1 	ENST00000394712.2|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr7_+_117120106_117120149	0.000143811	SOX3_SOX2	ENST00000426809.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr19_-_15442701_15442739	0.000108085	SOX3_SOX2	ENST00000594841.1|BRD4|ENSG00000141867.13|bromodomain containing 4 	ENST00000601941.1|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr2_+_166428839_166428859	0.000106019	SOX3_SOX2	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr17_+_30814707_30814814	3.7409e-05	SOX3_SOX2	ENST00000584792.1|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr1_-_117210290_117210376	3.45995e-05	SOX3_SOX2	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chr13_-_36920872_36920934	1.9845e-05	SOX3_SOX2	ENST00000451493.1|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
