hg19_v2_chr3_-_149051194_149051269	0.176981	SOX9	ENST00000470080.1|TM4SF18|ENSG00000163762.2|transmembrane 4 L six family member 18
hg19_v2_chr17_-_49124230_49124248	0.156877	SOX9	ENST00000510283.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000510855.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr3_-_65583561_65583610	0.149752	SOX9	ENST00000460329.2|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr2_+_30569506_30569525	0.138567	SOX9	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr11_+_131781290_131781362	0.132496	SOX9	ENST00000425719.2|NTM|ENSG00000182667.10|neurotrimin 	ENST00000374784.1|NTM|ENSG00000182667.10|neurotrimin
hg19_v2_chr7_-_131241361_131241398	0.127136	SOX9	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr6_-_128841503_128841870	0.12032	SOX9	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr1_+_64239657_64239724	0.120015	SOX9	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr20_-_17662705_17662874	0.118988	SOX9	ENST00000455029.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr20_-_17662878_17662940	0.116441	SOX9	ENST00000377813.1|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000377807.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000360807.4|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000398782.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr12_-_71003568_71003629	0.111665	SOX9	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr15_+_85923797_85923844	0.109908	SOX9	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr5_-_16936340_16936418	0.109772	SOX9	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr1_-_19426149_19426221	0.107789	SOX9	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr3_-_8686479_8686486	0.106497	SOX9	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr2_+_223536428_223536505	0.105471	SOX9	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr10_-_129924611_129924662	0.104114	SOX9	ENST00000368654.3|MKI67|ENSG00000148773.8|marker of proliferation Ki-67
hg19_v2_chr20_+_42086525_42086568	0.103629	SOX9	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr19_-_17375541_17375605	0.103121	SOX9	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr15_+_40886439_40886493	0.101672	SOX9	ENST00000532056.1|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5 	ENST00000399668.2|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5
hg19_v2_chr9_-_130517522_130517583	0.101452	SOX9	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr8_-_82395461_82395498	0.0970615	SOX9	ENST00000256104.4|FABP4|ENSG00000170323.4|fatty acid binding protein 4, adipocyte
hg19_v2_chr21_+_26934165_26934221	0.0941235	SOX9	ENST00000456917.1|MIR155HG|ENSG00000234883.2|MIR155 host gene (non-protein coding)
hg19_v2_chr6_-_75915757_75915775	0.0934314	SOX9	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr8_+_98656693_98656774	0.0926945	SOX9	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr20_-_43150601_43150751	0.0912676	SOX9	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr11_-_67141090_67141208	0.0905922	SOX9	ENST00000312438.7|CLCF1|ENSG00000175505.9|cardiotrophin-like cytokine factor 1
hg19_v2_chr3_+_9773409_9773479	0.0903481	SOX9	ENST00000433861.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000424362.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000383829.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000302054.3|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000420291.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1
hg19_v2_chr5_-_146833485_146833522	0.0882123	SOX9	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr7_-_92855762_92855837	0.0869201	SOX9	ENST00000453812.2|HEPACAM2|ENSG00000188175.5|HEPACAM family member 2 	ENST00000394468.2|HEPACAM2|ENSG00000188175.5|HEPACAM family member 2
hg19_v2_chr6_+_114178512_114178586	0.0860993	SOX9	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr12_-_45270151_45270162	0.0857971	SOX9	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr1_+_43766642_43766667	0.0853264	SOX9	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr3_-_149510553_149510610	0.0847724	SOX9	ENST00000462519.2|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000446160.1|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000383050.3|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1
hg19_v2_chr17_+_26646121_26646133	0.0832492	SOX9	ENST00000226230.6|TMEM97|ENSG00000109084.9|transmembrane protein 97
hg19_v2_chr16_+_15528332_15528385	0.0832113	SOX9	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr12_-_45270077_45270143	0.0829644	SOX9	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr14_+_100070869_100070893	0.082164	SOX9	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr1_-_182641367_182641386	0.0816363	SOX9	ENST00000508450.1|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr3_-_46904918_46904940	0.0804986	SOX9	ENST00000395869.1|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr1_-_93645818_93645918	0.0803633	SOX9	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr6_+_56954867_56954882	0.0794628	SOX9	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chrX_-_110654147_110654194	0.0785186	SOX9	ENST00000358070.4|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr12_-_122985494_122985543	0.0784855	SOX9	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr5_+_74632993_74633028	0.0782555	SOX9	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr15_+_85923856_85923987	0.0780889	SOX9	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr12_-_122985067_122985268	0.078013	SOX9	ENST00000540586.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8 	ENST00000543897.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr3_-_46904946_46904973	0.0780022	SOX9	ENST00000292327.4|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr2_-_61765315_61765422	0.0776864	SOX9	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr19_-_58514129_58514205	0.0776839	SOX9	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr19_-_17375527_17375538	0.0773271	SOX9	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr5_+_74633036_74633085	0.077316	SOX9	ENST00000343975.5|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr7_+_138145076_138145116	0.0766144	SOX9	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr3_+_39509163_39509180	0.0765707	SOX9	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr17_-_37764128_37764258	0.0761308	SOX9	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr7_-_111846435_111846471	0.0754283	SOX9	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr15_+_40886199_40886236	0.0750394	SOX9	ENST00000346991.5|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5 	ENST00000528975.1|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5 	ENST00000527044.1|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5
hg19_v2_chr9_-_35828576_35828734	0.0736398	SOX9	ENST00000377984.2|FAM221B|ENSG00000204930.5|family with sequence similarity 221, member B 	ENST00000423537.2|FAM221B|ENSG00000204930.5|family with sequence similarity 221, member B 	ENST00000472182.1|FAM221B|ENSG00000204930.5|family with sequence similarity 221, member B
hg19_v2_chr8_+_98656336_98656535	0.0734552	SOX9	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr19_+_58790314_58790358	0.0733902	SOX9	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr12_-_111358372_111358389	0.0731443	SOX9	ENST00000548438.1|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow 	ENST00000228841.8|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow
hg19_v2_chr19_-_45004556_45004581	0.0731269	SOX9	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr1_+_185703513_185703683	0.0729821	SOX9	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr12_-_24103954_24103972	0.071929	SOX9	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr1_-_68698222_68698266	0.0705744	SOX9	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr7_+_138145145_138145209	0.0703971	SOX9	ENST00000415680.2|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr4_+_41614720_41614734	0.0700849	SOX9	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr14_-_88459503_88459615	0.0692783	SOX9	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr4_+_95128748_95128794	0.0691946	SOX9	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr5_+_140602904_140603078	0.0687772	SOX9	ENST00000515856.2|PCDHB14|ENSG00000120327.4|protocadherin beta 14 	ENST00000239449.4|PCDHB14|ENSG00000120327.4|protocadherin beta 14
hg19_v2_chr10_-_104953009_104953061	0.0681869	SOX9	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr11_-_69519410_69519410	0.0676313	SOX9	ENST00000294312.3|FGF19|ENSG00000162344.3|fibroblast growth factor 19
hg19_v2_chr19_-_51891209_51891233	0.0676297	SOX9	ENST00000221973.3|LIM2|ENSG00000105370.3|lens intrinsic membrane protein 2, 19kDa 	ENST00000596399.1|LIM2|ENSG00000105370.3|lens intrinsic membrane protein 2, 19kDa
hg19_v2_chr10_+_70480963_70481010	0.0673896	SOX9	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr5_+_40679584_40679600	0.0670984	SOX9	ENST00000302472.3|PTGER4|ENSG00000171522.5|prostaglandin E receptor 4 (subtype EP4)
hg19_v2_chr2_-_97405775_97405816	0.0669267	SOX9	ENST00000264963.4|LMAN2L|ENSG00000114988.7|lectin, mannose-binding 2-like 	ENST00000537039.1|LMAN2L|ENSG00000114988.7|lectin, mannose-binding 2-like 	ENST00000377079.4|LMAN2L|ENSG00000114988.7|lectin, mannose-binding 2-like 	ENST00000426463.2|LMAN2L|ENSG00000114988.7|lectin, mannose-binding 2-like 	ENST00000534882.1|LMAN2L|ENSG00000114988.7|lectin, mannose-binding 2-like
hg19_v2_chr9_+_134000948_134001043	0.0668896	SOX9	ENST00000359428.5|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000411637.2|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000451030.1|NUP214|ENSG00000126883.12|nucleoporin 214kDa
hg19_v2_chr14_-_53019211_53019269	0.0664406	SOX9	ENST00000557374.1|TXNDC16|ENSG00000087301.4|thioredoxin domain containing 16 	ENST00000281741.4|TXNDC16|ENSG00000087301.4|thioredoxin domain containing 16
hg19_v2_chr15_-_34502197_34502212	0.0662789	SOX9	ENST00000557877.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr1_+_93645314_93645476	0.0661638	SOX9	ENST00000343253.7|CCDC18|ENSG00000122483.13|coiled-coil domain containing 18
hg19_v2_chr6_-_53213780_53213947	0.066125	SOX9	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr3_+_189507460_189507471	0.0661073	SOX9	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr22_+_38142235_38142297	0.06592	SOX9	ENST00000407319.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000403663.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000428075.1|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein
hg19_v2_chr10_+_73724123_73724206	0.0656883	SOX9	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr16_+_3019552_3019559	0.0653147	SOX9	ENST00000572687.1|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chr12_-_91546926_91546972	0.0652259	SOX9	ENST00000550758.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr2_-_70475701_70475717	0.0648224	SOX9	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr7_+_99775366_99775518	0.0645898	SOX9	ENST00000394018.2|STAG3|ENSG00000066923.13|stromal antigen 3 	ENST00000416412.1|STAG3|ENSG00000066923.13|stromal antigen 3
hg19_v2_chr10_+_6244829_6244904	0.0645689	SOX9	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr3_+_39509070_39509101	0.0645108	SOX9	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chrM_+_4431_4475	0.0644777	SOX9	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr2_+_54683419_54683442	0.0642996	SOX9	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr7_-_71868354_71868431	0.063996	SOX9	ENST00000412588.1|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr1_-_40367530_40367597	0.0637121	SOX9	ENST00000372816.2|MYCL|ENSG00000116990.9|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 	ENST00000372815.1|MYCL|ENSG00000116990.9|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog
hg19_v2_chr7_-_121944491_121944705	0.0635791	SOX9	ENST00000331178.4|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000427185.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000442488.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1
hg19_v2_chr2_-_200323414_200323468	0.0631607	SOX9	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr15_+_90895471_90895572	0.0622907	SOX9	ENST00000354377.3|ZNF774|ENSG00000196391.6|zinc finger protein 774 	ENST00000379090.5|ZNF774|ENSG00000196391.6|zinc finger protein 774
hg19_v2_chr11_-_10829851_10829860	0.0620021	SOX9	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr5_-_146833222_146833261	0.0618127	SOX9	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr17_+_26646175_26646295	0.0613934	SOX9	ENST00000583381.1|TMEM97|ENSG00000109084.9|transmembrane protein 97 	ENST00000582113.1|TMEM97|ENSG00000109084.9|transmembrane protein 97 	ENST00000582384.1|TMEM97|ENSG00000109084.9|transmembrane protein 97
hg19_v2_chr12_-_18243119_18243133	0.0611112	SOX9	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chrX_-_53711064_53711132	0.0610958	SOX9	ENST00000342160.3|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 	ENST00000446750.1|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr5_-_141338627_141338627	0.0610003	SOX9	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr7_-_112635675_112635720	0.060689	SOX9	ENST00000447785.1|AC018464.3|ENSG00000234520.1|AC018464.3	ENST00000451962.1|AC018464.3|ENSG00000234520.1|AC018464.3
hg19_v2_chr1_-_156828810_156828914	0.0606733	SOX9	ENST00000368195.3|INSRR|ENSG00000027644.4|insulin receptor-related receptor
hg19_v2_chr9_-_73483958_73483985	0.0606387	SOX9	ENST00000377101.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377106.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000360823.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377105.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr10_-_62332357_62332428	0.0602668	SOX9	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr14_+_53019993_53020137	0.058774	SOX9	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr1_+_180897269_180897295	0.0581132	SOX9	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr6_-_39282329_39282406	0.0580393	SOX9	ENST00000373231.4|KCNK17|ENSG00000124780.9|potassium channel, subfamily K, member 17
hg19_v2_chr20_-_40247133_40247194	0.0576419	SOX9	ENST00000373233.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6 	ENST00000309279.7|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr4_-_5894777_5894799	0.0568511	SOX9	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr17_+_77751931_77752014	0.0568079	SOX9	ENST00000310942.4|CBX2|ENSG00000173894.6|chromobox homolog 2 	ENST00000269399.5|CBX2|ENSG00000173894.6|chromobox homolog 2
hg19_v2_chr7_+_11013491_11013553	0.0558774	SOX9	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chrX_-_73512411_73512444	0.0558163	SOX9	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr20_-_45984401_45984514	0.0557785	SOX9	ENST00000311275.7|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr16_-_89556942_89557020	0.0553341	SOX9	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr16_+_3068393_3068446	0.0549621	SOX9	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr1_-_243418621_243418648	0.0545426	SOX9	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr9_-_21482312_21482312	0.0542702	SOX9	ENST00000448696.3|IFNE|ENSG00000184995.6|interferon, epsilon
hg19_v2_chr8_-_38326139_38326161	0.0539812	SOX9	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr11_-_77531752_77531792	0.0538648	SOX9	ENST00000440064.2|RSF1|ENSG00000048649.9|remodeling and spacing factor 1 	ENST00000528095.1|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr2_-_70475730_70475798	0.0534877	SOX9	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr11_+_67159416_67159492	0.0530098	SOX9	ENST00000307980.2|RAD9A|ENSG00000172613.3|RAD9 homolog A (S. pombe) 	ENST00000544620.1|RAD9A|ENSG00000172613.3|RAD9 homolog A (S. pombe)
hg19_v2_chr16_+_3019246_3019304	0.0527322	SOX9	ENST00000318782.8|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV 	ENST00000293978.8|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chr10_-_13570533_13570533	0.0527203	SOX9	ENST00000396900.2|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000396898.2|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr2_-_55277654_55277685	0.0525732	SOX9	ENST00000337526.6|RTN4|ENSG00000115310.13|reticulon 4 	ENST00000317610.7|RTN4|ENSG00000115310.13|reticulon 4 	ENST00000357732.4|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr8_-_70745575_70745625	0.0523835	SOX9	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr16_-_67217844_67217943	0.0518674	SOX9	ENST00000563902.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000561621.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000290881.7|KIAA0895L|ENSG00000196123.8|KIAA0895-like
hg19_v2_chr3_-_112329110_112329127	0.0517772	SOX9	ENST00000479368.1|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr7_+_100450328_100450399	0.0517469	SOX9	ENST00000540482.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000418037.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000428758.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000275729.3|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000415287.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000354161.3|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000416675.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9
hg19_v2_chr7_+_155090271_155090382	0.0516288	SOX9	ENST00000476756.1|INSIG1|ENSG00000186480.8|insulin induced gene 1
hg19_v2_chr4_-_41750922_41750987	0.0515621	SOX9	ENST00000226382.2|PHOX2B|ENSG00000109132.5|paired-like homeobox 2b
hg19_v2_chr11_-_8190534_8190602	0.0515197	SOX9	ENST00000309737.6|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000425599.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000539720.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000531450.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000419822.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000335425.7|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000343202.4|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone
hg19_v2_chr2_-_55277692_55277734	0.0514433	SOX9	ENST00000394611.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr16_+_67261008_67261073	0.0513378	SOX9	ENST00000304800.9|TMEM208|ENSG00000168701.14|transmembrane protein 208 	ENST00000563953.1|TMEM208|ENSG00000168701.14|transmembrane protein 208 	ENST00000565201.1|TMEM208|ENSG00000168701.14|transmembrane protein 208
hg19_v2_chr4_+_95128996_95129056	0.0512735	SOX9	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr16_-_73093597_73093597	0.0511913	SOX9	ENST00000397992.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr7_-_38289173_38289173	0.0504061	SOX9	ENST00000436911.2|TRGC2|ENSG00000227191.2|T cell receptor gamma constant 2
hg19_v2_chr6_+_72596406_72596454	0.0504053	SOX9	ENST00000491071.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr6_+_72596604_72596727	0.0500535	SOX9	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr5_+_140739537_140739703	0.0499634	SOX9	ENST00000522605.1|PCDHGB2|ENSG00000253910.1|protocadherin gamma subfamily B, 2
hg19_v2_chrX_+_85403487_85403625	0.0496279	SOX9	ENST00000373125.4|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chrX_-_38080077_38080177	0.0494828	SOX9	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chr22_+_31090793_31090889	0.0494793	SOX9	ENST00000332585.6|OSBP2|ENSG00000184792.11|oxysterol binding protein 2 	ENST00000382310.3|OSBP2|ENSG00000184792.11|oxysterol binding protein 2 	ENST00000446658.2|OSBP2|ENSG00000184792.11|oxysterol binding protein 2
hg19_v2_chr5_-_43313574_43313614	0.0494343	SOX9	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr6_+_32132360_32132437	0.0491757	SOX9	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr18_-_31802282_31802282	0.0489322	SOX9	ENST00000535475.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr5_+_140213815_140213969	0.0484789	SOX9	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr10_-_128359074_128359083	0.0481816	SOX9	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr7_+_120590803_120590857	0.0481315	SOX9	ENST00000315870.5|ING3|ENSG00000071243.11|inhibitor of growth family, member 3 	ENST00000339121.5|ING3|ENSG00000071243.11|inhibitor of growth family, member 3 	ENST00000445699.1|ING3|ENSG00000071243.11|inhibitor of growth family, member 3
hg19_v2_chr14_+_85996507_85996572	0.048099	SOX9	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr18_+_42260861_42260882	0.0480767	SOX9	ENST00000282030.5|SETBP1|ENSG00000152217.12|SET binding protein 1
hg19_v2_chr16_-_15474904_15474904	0.047783	SOX9	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr12_-_11548496_11548505	0.0477275	SOX9	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr3_-_149051444_149051548	0.0476595	SOX9	ENST00000296059.2|TM4SF18|ENSG00000163762.2|transmembrane 4 L six family member 18
hg19_v2_chr4_+_95129061_95129198	0.0475215	SOX9	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr1_-_21503337_21503407	0.047039	SOX9	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chrX_+_48380205_48380257	0.0468559	SOX9	ENST00000446158.1|EBP|ENSG00000147155.6|emopamil binding protein (sterol isomerase) 	ENST00000414061.1|EBP|ENSG00000147155.6|emopamil binding protein (sterol isomerase)
hg19_v2_chr5_+_15500280_15500312	0.0460373	SOX9	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chrX_+_85403445_85403479	0.045977	SOX9	ENST00000373131.1|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr1_-_243418344_243418356	0.0459351	SOX9	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr11_-_46867780_46867848	0.0458706	SOX9	ENST00000529230.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5 	ENST00000415402.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5 	ENST00000312055.5|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr20_-_45985172_45985240	0.0457614	SOX9	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr2_-_55277436_55277464	0.0455788	SOX9	ENST00000354474.6|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr11_+_67007518_67007533	0.0452433	SOX9	ENST00000530342.1|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A 	ENST00000308783.5|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A
hg19_v2_chr1_-_197115818_197115829	0.0449011	SOX9	ENST00000367409.4|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 	ENST00000294732.7|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
hg19_v2_chr10_+_104678032_104678094	0.0448426	SOX9	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr15_-_59041768_59041950	0.0446052	SOX9	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr2_-_55277512_55277533	0.0444689	SOX9	ENST00000402434.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr12_+_124997766_124997772	0.0444013	SOX9	ENST00000543970.1|RP11-83B20.1|ENSG00000214650.2|RP11-83B20.1
hg19_v2_chr10_+_102106829_102106881	0.0442082	SOX9	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr2_-_55276320_55276334	0.0440598	SOX9	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr14_+_75230011_75230120	0.0439318	SOX9	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr14_+_85996471_85996497	0.0438917	SOX9	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr19_+_45394477_45394546	0.0436176	SOX9	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chr11_+_1411503_1411521	0.0433539	SOX9	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr17_-_62308087_62308116	0.043251	SOX9	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr5_+_140729649_140729828	0.0428105	SOX9	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr5_-_147162263_147162338	0.0426473	SOX9	ENST00000333010.6|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2 	ENST00000265272.5|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr20_+_3827459_3827534	0.0425872	SOX9	ENST00000416600.2|MAVS|ENSG00000088888.13|mitochondrial antiviral signaling protein 	ENST00000428216.2|MAVS|ENSG00000088888.13|mitochondrial antiviral signaling protein
hg19_v2_chr2_+_102314161_102314206	0.0425109	SOX9	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr8_-_38325219_38325418	0.0424544	SOX9	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr16_-_27561209_27561244	0.0424314	SOX9	ENST00000356183.4|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa 	ENST00000561623.1|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa
hg19_v2_chr5_+_140248518_140248689	0.0424054	SOX9	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr14_-_88459182_88459236	0.0422456	SOX9	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr20_+_30795664_30795743	0.0422411	SOX9	ENST00000375749.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000375730.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000539210.1|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1
hg19_v2_chrX_-_153599578_153599656	0.0421079	SOX9	ENST00000360319.4|FLNA|ENSG00000196924.10|filamin A, alpha 	ENST00000344736.4|FLNA|ENSG00000196924.10|filamin A, alpha
hg19_v2_chr8_-_21645804_21645986	0.0419183	SOX9	ENST00000518077.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2 	ENST00000517892.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr11_-_79151695_79151710	0.0418721	SOX9	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr7_+_116312411_116312502	0.0418557	SOX9	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr1_-_26324534_26324648	0.0415613	SOX9	ENST00000374284.1|PAFAH2|ENSG00000158006.9|platelet-activating factor acetylhydrolase 2, 40kDa 	ENST00000441420.1|PAFAH2|ENSG00000158006.9|platelet-activating factor acetylhydrolase 2, 40kDa 	ENST00000374282.3|PAFAH2|ENSG00000158006.9|platelet-activating factor acetylhydrolase 2, 40kDa
hg19_v2_chr15_-_42186248_42186275	0.0414502	SOX9	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chr8_-_38326119_38326134	0.0414429	SOX9	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chrX_+_78003204_78003248	0.0414393	SOX9	ENST00000435339.3|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4 	ENST00000514744.1|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4
hg19_v2_chr2_-_158182410_158182446	0.0410081	SOX9	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr1_+_78769549_78769568	0.0409458	SOX9	ENST00000370758.1|PTGFR|ENSG00000122420.5|prostaglandin F receptor (FP)
hg19_v2_chr3_-_48700310_48700348	0.0408444	SOX9	ENST00000164024.4|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3 	ENST00000544264.1|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3
hg19_v2_chr3_+_49507559_49507580	0.0406762	SOX9	ENST00000421560.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000308775.2|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000545947.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000541308.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000539901.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000538711.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000418588.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1)
hg19_v2_chr9_+_2622085_2622174	0.0403352	SOX9	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr11_-_111649015_111649030	0.0401178	SOX9	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr1_-_68698197_68698214	0.0400932	SOX9	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr10_-_103874692_103874715	0.0396333	SOX9	ENST00000361198.5|LDB1|ENSG00000198728.6|LIM domain binding 1
hg19_v2_chr16_+_14802801_14802801	0.0392556	SOX9	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr11_-_117103208_117103288	0.0388878	SOX9	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr20_-_39317868_39317884	0.0387782	SOX9	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr13_+_42846272_42846334	0.0384609	SOX9	ENST00000025301.2|AKAP11|ENSG00000023516.7|A kinase (PRKA) anchor protein 11
hg19_v2_chr12_-_8815477_8815490	0.0381455	SOX9	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr3_+_88108381_88108450	0.0381065	SOX9	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr16_+_89989687_89989774	0.037802	SOX9	ENST00000315491.7|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000555576.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000554336.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000553967.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr10_-_24770632_24770632	0.0375604	SOX9	ENST00000596413.1|AL353583.1|ENSG00000269879.1|AL353583.1
hg19_v2_chr17_-_72358001_72358085	0.0372346	SOX9	ENST00000375366.3|BTBD17|ENSG00000204347.3|BTB (POZ) domain containing 17
hg19_v2_chr9_+_4792869_4792902	0.0367687	SOX9	ENST00000381750.4|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr7_+_44788146_44788181	0.0366257	SOX9	ENST00000413916.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr19_+_12949251_12949370	0.0360903	SOX9	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr1_+_10271674_10271674	0.0355832	SOX9	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr5_-_159546396_159546470	0.0355033	SOX9	ENST00000523662.1|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000456329.3|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000307063.7|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A
hg19_v2_chr22_+_21987005_21987021	0.0354542	SOX9	ENST00000607942.1|CCDC116|ENSG00000161180.6|coiled-coil domain containing 116 	ENST00000425975.1|CCDC116|ENSG00000161180.6|coiled-coil domain containing 116 	ENST00000292779.3|CCDC116|ENSG00000161180.6|coiled-coil domain containing 116
hg19_v2_chr15_-_37392703_37392717	0.0353712	SOX9	ENST00000382766.2|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000444725.1|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr21_-_33104367_33104441	0.0352807	SOX9	ENST00000286835.7|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4 	ENST00000399804.1|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4
hg19_v2_chr13_+_53029564_53029650	0.0349412	SOX9	ENST00000468284.1|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000378034.3|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000258607.5|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000378037.5|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2
hg19_v2_chr3_+_51422478_51422478	0.0349023	SOX9	ENST00000528157.1|MANF|ENSG00000145050.11|mesencephalic astrocyte-derived neurotrophic factor
hg19_v2_chr12_+_69979113_69979155	0.0348919	SOX9	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr5_+_170288856_170288920	0.0348557	SOX9	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr3_-_123339418_123339473	0.0346904	SOX9	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr1_-_152297679_152297722	0.034414	SOX9	ENST00000368799.1|FLG|ENSG00000143631.10|filaggrin
hg19_v2_chr17_-_1531635_1531725	0.0342073	SOX9	ENST00000571650.1|SLC43A2|ENSG00000167703.10|solute carrier family 43 (amino acid system L transporter), member 2
hg19_v2_chr1_+_155293702_155293729	0.034161	SOX9	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr17_+_57232690_57232860	0.0340066	SOX9	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr2_+_61293021_61293093	0.0337839	SOX9	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr2_+_160568978_160569064	0.0333582	SOX9	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr7_-_107643674_107643700	0.0331431	SOX9	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr14_-_85996332_85996403	0.032975	SOX9	ENST00000380722.1|RP11-497E19.1|ENSG00000205562.1|RP11-497E19.1
hg19_v2_chr11_-_102323740_102323780	0.0329257	SOX9	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr4_-_76598326_76598346	0.0329202	SOX9	ENST00000503660.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr12_-_10151773_10151899	0.0328099	SOX9	ENST00000298527.6|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B 	ENST00000348658.4|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B
hg19_v2_chrX_+_65384052_65384112	0.0325924	SOX9	ENST00000336279.5|HEPH|ENSG00000089472.12|hephaestin 	ENST00000458621.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr12_+_69979210_69979252	0.0325537	SOX9	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr19_-_15490568_15490606	0.0325446	SOX9	ENST00000269701.2|AKAP8|ENSG00000105127.4|A kinase (PRKA) anchor protein 8
hg19_v2_chr15_+_84115868_84115980	0.0322518	SOX9	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr12_-_81763184_81763202	0.0316815	SOX9	ENST00000548670.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000541570.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000553058.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chrX_-_117107542_117107677	0.0315389	SOX9	ENST00000371878.1|KLHL13|ENSG00000003096.9|kelch-like family member 13
hg19_v2_chr5_+_179159813_179159851	0.0315284	SOX9	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr3_-_123339343_123339401	0.0312892	SOX9	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr7_+_44788430_44788530	0.0310937	SOX9	ENST00000457123.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2 	ENST00000309315.4|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr2_+_111880242_111880289	0.0309638	SOX9	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr1_+_150039369_150039444	0.030792	SOX9	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr7_+_29519486_29519549	0.0305426	SOX9	ENST00000409041.4|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr7_+_77167376_77167395	0.0303926	SOX9	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chrX_-_135962876_135962896	0.0302615	SOX9	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr9_-_139658965_139658975	0.0301939	SOX9	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chr9_-_139965000_139965040	0.0299843	SOX9	ENST00000409687.3|SAPCD2|ENSG00000186193.7|suppressor APC domain containing 2
hg19_v2_chr15_+_71184931_71184974	0.0297429	SOX9	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr2_+_10262857_10262873	0.0297315	SOX9	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr8_-_66753682_66753743	0.0296934	SOX9	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr12_-_91451758_91451763	0.0296568	SOX9	ENST00000266719.3|KERA|ENSG00000139330.5|keratocan
hg19_v2_chr11_-_6677018_6677085	0.0294898	SOX9	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr1_+_26737292_26737322	0.0289618	SOX9	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr7_+_77167343_77167369	0.0286646	SOX9	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr16_+_22524844_22525003	0.0282183	SOX9	ENST00000538606.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000424340.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000517539.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000528249.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr4_-_149363662_149363688	0.0282014	SOX9	ENST00000355292.3|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2 	ENST00000358102.3|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2
hg19_v2_chrX_+_65384182_65384231	0.0280767	SOX9	ENST00000441993.2|HEPH|ENSG00000089472.12|hephaestin 	ENST00000419594.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr12_+_69979446_69979471	0.0277459	SOX9	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr5_-_146889619_146889639	0.0277109	SOX9	ENST00000343218.5|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr6_+_30687978_30688141	0.0276754	SOX9	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr10_-_94050820_94050868	0.0276056	SOX9	ENST00000265997.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr7_-_99774945_99775026	0.0276029	SOX9	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr16_-_75590114_75590184	0.0275123	SOX9	ENST00000568377.1|TMEM231|ENSG00000205084.6|transmembrane protein 231 	ENST00000565067.1|TMEM231|ENSG00000205084.6|transmembrane protein 231 	ENST00000258173.6|TMEM231|ENSG00000205084.6|transmembrane protein 231
hg19_v2_chr12_-_10251539_10251560	0.0274558	SOX9	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr3_+_43328004_43328095	0.0273746	SOX9	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr11_-_102323489_102323576	0.0271756	SOX9	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr1_-_184723942_184724047	0.0268903	SOX9	ENST00000318130.8|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr5_+_140767452_140767452	0.0266396	SOX9	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr20_-_34330129_34330234	0.0265428	SOX9	ENST00000397370.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000528062.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000407261.4|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000374038.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000361162.6|RBM39|ENSG00000131051.16|RNA binding motif protein 39
hg19_v2_chr15_+_80696666_80696700	0.0264129	SOX9	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr6_-_134861089_134861168	0.0262647	SOX9	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr12_-_11508520_11508686	0.026098	SOX9	ENST00000545626.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1 	ENST00000500254.2|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chrX_-_16888448_16888537	0.0260205	SOX9	ENST00000468092.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000404022.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000380087.2|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7
hg19_v2_chr18_+_7946941_7946952	0.0256876	SOX9	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr6_+_97372596_97372644	0.0256403	SOX9	ENST00000369261.4|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr4_-_109090106_109090124	0.0256394	SOX9	ENST00000379951.2|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr12_+_95611569_95611608	0.0256341	SOX9	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr15_-_50411412_50411437	0.0255597	SOX9	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr12_+_64238539_64238600	0.0254165	SOX9	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chr11_-_126138808_126138877	0.0254143	SOX9	ENST00000332118.6|SRPR|ENSG00000182934.7|signal recognition particle receptor (docking protein) 	ENST00000532259.1|SRPR|ENSG00000182934.7|signal recognition particle receptor (docking protein)
hg19_v2_chr17_-_16472483_16472533	0.0253944	SOX9	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr15_-_34659349_34659479	0.0253466	SOX9	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr5_-_147162078_147162106	0.0252851	SOX9	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr11_+_196738_196779	0.0248612	SOX9	ENST00000325113.4|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3 	ENST00000342593.5|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3
hg19_v2_chr7_-_150924121_150924332	0.0248231	SOX9	ENST00000441774.1|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000222388.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000287844.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2
hg19_v2_chr19_+_45971246_45971265	0.024643	SOX9	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr16_+_19467772_19467839	0.0246179	SOX9	ENST00000219821.5|TMC5|ENSG00000103534.12|transmembrane channel-like 5 	ENST00000561503.1|TMC5|ENSG00000103534.12|transmembrane channel-like 5 	ENST00000564959.1|TMC5|ENSG00000103534.12|transmembrane channel-like 5
hg19_v2_chr3_+_45635661_45635816	0.0245847	SOX9	ENST00000440097.1|LIMD1|ENSG00000144791.5|LIM domains containing 1
hg19_v2_chr1_+_155294264_155294332	0.0245563	SOX9	ENST00000368349.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr15_-_52944231_52944268	0.0244277	SOX9	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr7_-_27239703_27239725	0.0243829	SOX9	ENST00000222753.4|HOXA13|ENSG00000106031.6|homeobox A13
hg19_v2_chr6_-_27782548_27782607	0.0243024	SOX9	ENST00000333151.3|HIST1H2AJ|ENSG00000182611.3|histone cluster 1, H2aj
hg19_v2_chr1_+_155294342_155294368	0.0241976	SOX9	ENST00000292254.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chrX_-_2418596_2418621	0.0241728	SOX9	ENST00000381218.3|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1
hg19_v2_chr16_-_20416053_20416064	0.0236779	SOX9	ENST00000302451.4|PDILT|ENSG00000169340.5|protein disulfide isomerase-like, testis expressed
hg19_v2_chr6_-_89927151_89927156	0.0233055	SOX9	ENST00000454853.2|GABRR1|ENSG00000146276.7|gamma-aminobutyric acid (GABA) A receptor, rho 1
hg19_v2_chr1_+_147374915_147374946	0.0232676	SOX9	ENST00000240986.4|GJA8|ENSG00000121634.4|gap junction protein, alpha 8, 50kDa
hg19_v2_chr11_-_95522907_95522989	0.023247	SOX9	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr14_-_21516590_21516692	0.0231444	SOX9	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr1_+_155579979_155580032	0.0230984	SOX9	ENST00000452804.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000538143.1|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000245564.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000368341.4|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator
hg19_v2_chr14_-_69619291_69619326	0.022977	SOX9	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr20_-_35492048_35492118	0.0226537	SOX9	ENST00000237536.4|SOGA1|ENSG00000149639.10|suppressor of glucose, autophagy associated 1
hg19_v2_chrX_+_46306624_46306709	0.0226333	SOX9	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr20_+_61448376_61448418	0.0226211	SOX9	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr19_+_42580274_42580375	0.0225918	SOX9	ENST00000359044.4|ZNF574|ENSG00000105732.9|zinc finger protein 574
hg19_v2_chr2_-_151344172_151344243	0.0225865	SOX9	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr5_+_140787600_140787770	0.0223737	SOX9	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr16_-_46782221_46782263	0.0221638	SOX9	ENST00000394809.4|MYLK3|ENSG00000140795.8|myosin light chain kinase 3
hg19_v2_chr2_+_220492116_220492137	0.0221458	SOX9	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr7_+_128349106_128349128	0.0220566	SOX9	ENST00000485070.1|FAM71F1|ENSG00000135248.11|family with sequence similarity 71, member F1
hg19_v2_chr9_+_108463234_108463265	0.0220565	SOX9	ENST00000374688.1|TMEM38B|ENSG00000095209.7|transmembrane protein 38B
hg19_v2_chr4_-_109089573_109089585	0.022044	SOX9	ENST00000265165.1|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr16_+_838614_838633	0.0219573	SOX9	ENST00000262315.9|CHTF18|ENSG00000127586.12|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 	ENST00000455171.2|CHTF18|ENSG00000127586.12|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)
hg19_v2_chr5_-_83680192_83680209	0.0219141	SOX9	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr2_-_37899323_37899374	0.0216971	SOX9	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr5_+_169931249_169931364	0.0215984	SOX9	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr11_-_77531858_77531880	0.0215707	SOX9	ENST00000360355.2|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chrX_-_2418936_2419024	0.0215563	SOX9	ENST00000461691.1|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381223.4|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381222.2|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000412516.2|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked 	ENST00000334651.5|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked
hg19_v2_chr16_+_66400533_66400545	0.0214971	SOX9	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr1_+_26737253_26737269	0.0212104	SOX9	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr14_+_39644387_39644417	0.0211957	SOX9	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr8_+_26435359_26435426	0.0211002	SOX9	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr14_-_69619823_69619879	0.021089	SOX9	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chrX_-_73834449_73834481	0.021024	SOX9	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr12_+_69633372_69633396	0.0209831	SOX9	ENST00000456847.3|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa 	ENST00000266679.8|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr12_-_81763127_81763171	0.020983	SOX9	ENST00000541017.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr7_-_99699538_99699563	0.0207971	SOX9	ENST00000343023.6|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7 	ENST00000303887.5|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7
hg19_v2_chr20_+_32150140_32150230	0.0206432	SOX9	ENST00000344201.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000346541.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397800.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397798.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000492345.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr12_+_54378923_54378970	0.0206219	SOX9	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr5_-_83680603_83680617	0.0206022	SOX9	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr9_+_35538616_35538650	0.0204717	SOX9	ENST00000455600.1|RUSC2|ENSG00000198853.7|RUN and SH3 domain containing 2
hg19_v2_chrX_-_74145273_74145319	0.0203867	SOX9	ENST00000055682.6|KIAA2022|ENSG00000050030.9|KIAA2022
hg19_v2_chr2_-_70475586_70475646	0.0202298	SOX9	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr6_-_30654977_30655009	0.0202246	SOX9	ENST00000399199.3|PPP1R18|ENSG00000146112.7|protein phosphatase 1, regulatory subunit 18
hg19_v2_chr11_+_64949343_64949454	0.0202095	SOX9	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr19_-_5340730_5340859	0.0199616	SOX9	ENST00000372412.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000357368.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000262963.6|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000348075.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000353284.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr10_+_91461337_91461380	0.019777	SOX9	ENST00000260753.4|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000416354.1|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000394289.2|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000371728.3|KIF20B|ENSG00000138182.10|kinesin family member 20B
hg19_v2_chr5_+_140593509_140593509	0.0197686	SOX9	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chr1_+_47137445_47137533	0.0197085	SOX9	ENST00000569393.1|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000334122.4|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000415500.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr12_+_49621658_49621709	0.0196778	SOX9	ENST00000541364.1|TUBA1C|ENSG00000167553.10|tubulin, alpha 1c
hg19_v2_chr17_-_74722536_74722639	0.0196282	SOX9	ENST00000585429.1|JMJD6|ENSG00000070495.10|jumonji domain containing 6
hg19_v2_chr17_+_7761301_7761396	0.0195889	SOX9	ENST00000332439.4|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1 	ENST00000570446.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr15_-_56035177_56035355	0.0193514	SOX9	ENST00000389286.4|PRTG|ENSG00000166450.8|protogenin 	ENST00000561292.1|PRTG|ENSG00000166450.8|protogenin
hg19_v2_chr7_+_128379346_128379447	0.0192608	SOX9	ENST00000535011.2|CALU|ENSG00000128595.12|calumenin 	ENST00000542996.2|CALU|ENSG00000128595.12|calumenin 	ENST00000535623.1|CALU|ENSG00000128595.12|calumenin 	ENST00000538546.1|CALU|ENSG00000128595.12|calumenin 	ENST00000249364.4|CALU|ENSG00000128595.12|calumenin 	ENST00000449187.2|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr7_-_16685422_16685448	0.0192394	SOX9	ENST00000306999.2|ANKMY2|ENSG00000106524.4|ankyrin repeat and MYND domain containing 2
hg19_v2_chr11_+_34073195_34073266	0.0192041	SOX9	ENST00000341394.4|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr2_-_54197915_54197977	0.0190924	SOX9	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr2_-_1748214_1748295	0.0190278	SOX9	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr13_+_24553933_24553949	0.0189204	SOX9	ENST00000424834.2|SPATA13|ENSG00000182957.11|spermatogenesis associated 13 	ENST00000439928.2|RP11-309I15.1|ENSG00000228741.2|RP11-309I15.1
hg19_v2_chr7_+_128379449_128379463	0.0188832	SOX9	ENST00000479257.1|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr12_-_49582978_49583107	0.0188715	SOX9	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr16_+_88636789_88636827	0.0187492	SOX9	ENST00000301011.5|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18 	ENST00000452588.2|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr6_-_24877490_24877583	0.0186315	SOX9	ENST00000540914.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B 	ENST00000378023.4|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr16_+_1662326_1662442	0.018565	SOX9	ENST00000397412.3|CRAMP1L|ENSG00000007545.11|Crm, cramped-like (Drosophila)
hg19_v2_chr11_+_60691924_60691966	0.0185411	SOX9	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr2_-_208031542_208031595	0.0185357	SOX9	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr4_-_140544386_140544413	0.0184517	SOX9	ENST00000561977.1|RP11-308D13.3|ENSG00000261268.1|RP11-308D13.3
hg19_v2_chr13_+_111767650_111767874	0.0183955	SOX9	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr20_+_37554955_37555067	0.0182765	SOX9	ENST00000217429.4|FAM83D|ENSG00000101447.9|family with sequence similarity 83, member D
hg19_v2_chr19_+_36208877_36208921	0.0181432	SOX9	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr1_+_11751748_11751798	0.0179604	SOX9	ENST00000294485.5|DRAXIN|ENSG00000162490.6|dorsal inhibitory axon guidance protein
hg19_v2_chr3_+_111260980_111261016	0.0179388	SOX9	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr6_+_50681541_50681541	0.0178835	SOX9	ENST00000008391.3|TFAP2D|ENSG00000008197.4|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
hg19_v2_chr16_-_838329_838397	0.017713	SOX9	ENST00000563560.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000569601.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000565809.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000565377.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000007264.2|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000567114.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1
hg19_v2_chr3_+_181429704_181429722	0.0176252	SOX9	ENST00000431565.2|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2 	ENST00000325404.1|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2
hg19_v2_chr1_-_160040038_160040064	0.0175425	SOX9	ENST00000368089.3|KCNJ10|ENSG00000177807.6|potassium inwardly-rectifying channel, subfamily J, member 10
hg19_v2_chr6_-_127840336_127840452	0.0175188	SOX9	ENST00000525778.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr9_-_73483926_73483945	0.0174863	SOX9	ENST00000396283.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000361823.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr5_+_76011868_76012005	0.0174373	SOX9	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr5_-_134871639_134871660	0.0172607	SOX9	ENST00000314744.4|NEUROG1|ENSG00000181965.4|neurogenin 1
hg19_v2_chr6_-_127840021_127840047	0.0171862	SOX9	ENST00000465909.2|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr12_+_95611516_95611527	0.0171458	SOX9	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chrX_-_133931164_133931269	0.0169624	SOX9	ENST00000370790.1|FAM122B|ENSG00000156504.12|family with sequence similarity 122B 	ENST00000298090.6|FAM122B|ENSG00000156504.12|family with sequence similarity 122B
hg19_v2_chrX_+_70443050_70443061	0.0168849	SOX9	ENST00000361726.6|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr6_+_32939964_32939994	0.016866	SOX9	ENST00000607833.1|BRD2|ENSG00000204256.8|bromodomain containing 2
hg19_v2_chr12_+_22778009_22778112	0.0168122	SOX9	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr11_+_125496619_125496646	0.0166995	SOX9	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr1_-_235491462_235491534	0.0166492	SOX9	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr1_-_119530428_119530572	0.0165433	SOX9	ENST00000369429.3|TBX15|ENSG00000092607.9|T-box 15
hg19_v2_chr4_-_83351294_83351417	0.0165314	SOX9	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr1_+_33116743_33116754	0.0164508	SOX9	ENST00000414241.3|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4 	ENST00000373493.5|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4
hg19_v2_chr8_+_126442563_126442624	0.0163502	SOX9	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr7_-_148725733_148725759	0.0162459	SOX9	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr14_-_91884150_91884234	0.0160047	SOX9	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr16_-_3068171_3068191	0.0159872	SOX9	ENST00000572154.1|CLDN6|ENSG00000184697.6|claudin 6 	ENST00000328796.4|CLDN6|ENSG00000184697.6|claudin 6
hg19_v2_chr4_-_83350580_83350600	0.0158011	SOX9	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr19_-_44100275_44100302	0.0157273	SOX9	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr1_-_201123586_201123637	0.0156761	SOX9	ENST00000414605.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367334.5|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367332.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr22_+_38864041_38864150	0.0155459	SOX9	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr1_-_201123546_201123581	0.015521	SOX9	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr1_+_158815588_158815691	0.0154733	SOX9	ENST00000438394.1|MNDA|ENSG00000163563.7|myeloid cell nuclear differentiation antigen
hg19_v2_chr15_+_89164520_89164559	0.0154159	SOX9	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr13_-_107214291_107214305	0.0153787	SOX9	ENST00000375926.1|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr13_-_84456527_84456541	0.015292	SOX9	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr16_+_27561449_27561481	0.0152149	SOX9	ENST00000261588.4|KIAA0556|ENSG00000047578.8|KIAA0556
hg19_v2_chr11_+_64949899_64949941	0.0150683	SOX9	ENST00000531068.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527699.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533909.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527323.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr3_+_16306837_16306973	0.0150635	SOX9	ENST00000606098.1|OXNAD1|ENSG00000154814.9|oxidoreductase NAD-binding domain containing 1
hg19_v2_chr5_+_140797296_140797427	0.0150489	SOX9	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr6_+_22146851_22146883	0.0148	SOX9	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr4_+_54243862_54243874	0.014701	SOX9	ENST00000306932.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr16_+_56970567_56970647	0.0146709	SOX9	ENST00000563911.1|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
hg19_v2_chr3_+_69985734_69985754	0.0143557	SOX9	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr1_-_200992827_200992867	0.0143524	SOX9	ENST00000332129.2|KIF21B|ENSG00000116852.10|kinesin family member 21B 	ENST00000422435.2|KIF21B|ENSG00000116852.10|kinesin family member 21B
hg19_v2_chrX_+_107288197_107288212	0.0143029	SOX9	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr5_+_50678921_50678921	0.0142896	SOX9	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr7_+_111846741_111846776	0.0141642	SOX9	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr17_-_1532106_1532148	0.0141389	SOX9	ENST00000301335.5|SLC43A2|ENSG00000167703.10|solute carrier family 43 (amino acid system L transporter), member 2 	ENST00000382147.4|SLC43A2|ENSG00000167703.10|solute carrier family 43 (amino acid system L transporter), member 2
hg19_v2_chr11_-_35441597_35441613	0.0141009	SOX9	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr6_+_43457317_43457360	0.0140934	SOX9	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr2_+_220491973_220492049	0.0139306	SOX9	ENST00000358055.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr2_-_86422523_86422595	0.0138986	SOX9	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr22_+_35796108_35796172	0.0138655	SOX9	ENST00000382011.5|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5 	ENST00000416905.1|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5
hg19_v2_chr7_+_94537542_94537591	0.0138645	SOX9	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr12_-_49582593_49582682	0.0136125	SOX9	ENST00000295766.5|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chrX_-_103268259_103268259	0.0136018	SOX9	ENST00000217926.5|H2BFWT|ENSG00000123569.7|H2B histone family, member W, testis-specific
hg19_v2_chr2_+_220492287_220492338	0.0133971	SOX9	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr5_+_140557371_140557371	0.0133689	SOX9	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr3_+_69985792_69985874	0.0133462	SOX9	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr2_+_46926326_46926452	0.0133275	SOX9	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr9_-_99064386_99064410	0.0132833	SOX9	ENST00000375262.2|HSD17B3|ENSG00000130948.5|hydroxysteroid (17-beta) dehydrogenase 3
hg19_v2_chr12_+_49761273_49761330	0.0132536	SOX9	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr6_+_21666633_21666681	0.0132485	SOX9	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr1_-_31381528_31381659	0.0128554	SOX9	ENST00000339394.6|SDC3|ENSG00000162512.11|syndecan 3
hg19_v2_chr2_-_107503558_107503580	0.0128513	SOX9	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr15_-_64673665_64673709	0.012838	SOX9	ENST00000300035.4|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr11_+_34654011_34654118	0.0127669	SOX9	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr5_-_131826457_131826514	0.0127509	SOX9	ENST00000437654.1|IRF1|ENSG00000125347.9|interferon regulatory factor 1 	ENST00000245414.4|IRF1|ENSG00000125347.9|interferon regulatory factor 1
hg19_v2_chr1_-_154164534_154164687	0.0124253	SOX9	ENST00000271850.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368530.2|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr5_-_39425290_39425336	0.0122883	SOX9	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr1_+_14075903_14075940	0.0121895	SOX9	ENST00000343137.4|PRDM2|ENSG00000116731.18|PR domain containing 2, with ZNF domain 	ENST00000503842.1|PRDM2|ENSG00000116731.18|PR domain containing 2, with ZNF domain 	ENST00000407521.3|PRDM2|ENSG00000116731.18|PR domain containing 2, with ZNF domain 	ENST00000505823.1|PRDM2|ENSG00000116731.18|PR domain containing 2, with ZNF domain
hg19_v2_chr15_-_52263937_52264003	0.0119782	SOX9	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr3_-_49058479_49058491	0.0118631	SOX9	ENST00000440857.1|DALRD3|ENSG00000178149.12|DALR anticodon binding domain containing 3
hg19_v2_chr1_+_47137544_47137550	0.0118213	SOX9	ENST00000564373.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr22_+_35796056_35796090	0.0117424	SOX9	ENST00000216122.4|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5
hg19_v2_chr6_-_11232891_11232915	0.0117052	SOX9	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr2_+_86668464_86668584	0.0114795	SOX9	ENST00000409064.1|KDM3A|ENSG00000115548.12|lysine (K)-specific demethylase 3A
hg19_v2_chr11_-_77532050_77532066	0.0113985	SOX9	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chrX_-_75005054_75005094	0.0113692	SOX9	ENST00000373359.2|MAGEE2|ENSG00000186675.5|melanoma antigen family E, 2
hg19_v2_chr11_+_13299186_13299432	0.01134	SOX9	ENST00000527998.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000396441.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000533520.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529825.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389707.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000401424.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529388.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000530357.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403290.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000361003.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389708.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403510.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000482049.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like
hg19_v2_chr8_+_11660120_11660221	0.011337	SOX9	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr18_+_72163536_72163646	0.0111983	SOX9	ENST00000579847.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000583203.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000581513.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000577600.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000579583.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000584613.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family)
hg19_v2_chrX_-_19817869_19817922	0.0111324	SOX9	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr19_-_44439387_44439419	0.0110946	SOX9	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr19_+_36359341_36359352	0.0110247	SOX9	ENST00000221891.4|APLP1|ENSG00000105290.7|amyloid beta (A4) precursor-like protein 1
hg19_v2_chr3_-_48470838_48470872	0.0109634	SOX9	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr6_-_27440837_27440912	0.0109266	SOX9	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr11_-_35441524_35441578	0.0108434	SOX9	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr12_-_99548524_99548550	0.0106099	SOX9	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr1_+_10459111_10459175	0.0105828	SOX9	ENST00000541529.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000270776.8|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000483936.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000538557.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr1_+_200993071_200993094	0.010494	SOX9	ENST00000446333.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1	ENST00000458003.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1
hg19_v2_chrX_+_135579670_135579715	0.01016	SOX9	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr17_-_38210644_38210675	0.0101052	SOX9	ENST00000394128.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000394127.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000356271.3|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000535071.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580885.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000543759.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000537674.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580517.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000578161.1|MED24|ENSG00000008838.13|mediator complex subunit 24
hg19_v2_chr11_-_33183006_33183046	0.0100135	SOX9	ENST00000524827.1|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 	ENST00000323959.4|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 	ENST00000431742.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr20_+_61147651_61147666	0.00997928	SOX9	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr17_+_30813576_30813637	0.00976637	SOX9	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr9_+_134269439_134269506	0.00974302	SOX9	ENST00000405995.1|PRRC2B|ENSG00000130723.13|proline-rich coiled-coil 2B
hg19_v2_chrX_+_107288239_107288259	0.00973288	SOX9	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr7_+_120591170_120591244	0.00970701	SOX9	ENST00000431467.1|ING3|ENSG00000071243.11|inhibitor of growth family, member 3
hg19_v2_chr19_+_48972459_48972490	0.00969852	SOX9	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr12_+_53443963_53443970	0.00968569	SOX9	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr2_+_27070964_27071027	0.00942476	SOX9	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr1_-_31538517_31538632	0.00935323	SOX9	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr17_+_33914460_33914536	0.00905042	SOX9	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr6_-_53213587_53213772	0.00898371	SOX9	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr14_+_91580732_91580746	0.0088462	SOX9	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr18_+_72163443_72163521	0.00880205	SOX9	ENST00000324262.4|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000580672.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family)
hg19_v2_chrX_+_46306714_46306741	0.00877806	SOX9	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr4_-_83351005_83351019	0.00866429	SOX9	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr9_+_15422702_15422883	0.00864304	SOX9	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr17_+_27573875_27573881	0.00857512	SOX9	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chr12_+_53443680_53443858	0.00853818	SOX9	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr20_-_13971255_13971264	0.00849048	SOX9	ENST00000284951.5|SEL1L2|ENSG00000101251.7|sel-1 suppressor of lin-12-like 2 (C. elegans) 	ENST00000378072.5|SEL1L2|ENSG00000101251.7|sel-1 suppressor of lin-12-like 2 (C. elegans)
hg19_v2_chr3_-_122283424_122283498	0.00844199	SOX9	ENST00000477522.2|PARP9|ENSG00000138496.12|poly (ADP-ribose) polymerase family, member 9 	ENST00000360356.2|PARP9|ENSG00000138496.12|poly (ADP-ribose) polymerase family, member 9
hg19_v2_chr9_-_127905736_127905815	0.00840054	SOX9	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr6_+_28193037_28193117	0.00838166	SOX9	ENST00000531981.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000425468.2|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000252207.5|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000531979.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000527436.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9
hg19_v2_chr16_-_53737795_53737850	0.00804822	SOX9	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr6_+_56911336_56911347	0.00801007	SOX9	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr5_-_39425222_39425283	0.00798881	SOX9	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr2_+_109271481_109271509	0.0079555	SOX9	ENST00000542845.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1 	ENST00000393314.2|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr9_-_35111420_35111455	0.00784271	SOX9	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr10_+_104535994_104536014	0.00783764	SOX9	ENST00000369889.4|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr3_-_124839648_124839709	0.00773141	SOX9	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chrY_-_21239221_21239302	0.00764522	SOX9	ENST00000447937.1|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding) 	ENST00000331787.2|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding)
hg19_v2_chr7_-_99679324_99679371	0.00762139	SOX9	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr1_+_14075865_14075898	0.00760677	SOX9	ENST00000413440.1|PRDM2|ENSG00000116731.18|PR domain containing 2, with ZNF domain
hg19_v2_chr9_+_27109133_27109187	0.00716142	SOX9	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chrX_+_84499038_84499078	0.0070963	SOX9	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr6_+_50786414_50786439	0.00704602	SOX9	ENST00000344788.3|TFAP2B|ENSG00000008196.8|transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 	ENST00000393655.3|TFAP2B|ENSG00000008196.8|transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 	ENST00000263046.4|TFAP2B|ENSG00000008196.8|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
hg19_v2_chr19_-_1592652_1592762	0.00702017	SOX9	ENST00000156825.1|MBD3|ENSG00000071655.13|methyl-CpG binding domain protein 3 	ENST00000434436.3|MBD3|ENSG00000071655.13|methyl-CpG binding domain protein 3
hg19_v2_chr8_+_24151620_24151647	0.00691238	SOX9	ENST00000437154.2|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr7_-_5463175_5463195	0.0068648	SOX9	ENST00000399537.4|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18 	ENST00000430969.1|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18
hg19_v2_chr14_-_69619689_69619757	0.00675592	SOX9	ENST00000389997.6|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000557386.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000554681.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr1_+_68150744_68150890	0.0065515	SOX9	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr4_-_121993673_121993698	0.0064838	SOX9	ENST00000379692.4|NDNF|ENSG00000173376.9|neuron-derived neurotrophic factor
hg19_v2_chr12_+_22778116_22778139	0.00647694	SOX9	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr1_-_173991434_173991556	0.00642304	SOX9	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr12_-_118797475_118797527	0.0061457	SOX9	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr8_+_11660227_11660306	0.00611076	SOX9	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr16_+_50775971_50776014	0.00610344	SOX9	ENST00000311559.9|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000564326.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000566206.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome)
hg19_v2_chr18_+_18943554_18943587	0.00605885	SOX9	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr19_+_10764937_10764998	0.00605542	SOX9	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chrX_+_84498989_84499003	0.00581568	SOX9	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr17_+_36584662_36584730	0.00577874	SOX9	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr11_+_125365110_125365110	0.0054459	SOX9	ENST00000527818.1|AP000708.1|ENSG00000255537.1|AP000708.1
hg19_v2_chr6_+_27782788_27782823	0.00540156	SOX9	ENST00000359465.4|HIST1H2BM|ENSG00000196374.5|histone cluster 1, H2bm
hg19_v2_chr19_+_7694623_7694710	0.00538263	SOX9	ENST00000594797.1|PET100|ENSG00000229833.5|PET100 homolog (S. cerevisiae) 	ENST00000456958.3|PET100|ENSG00000229833.5|PET100 homolog (S. cerevisiae) 	ENST00000601406.1|PET100|ENSG00000229833.5|PET100 homolog (S. cerevisiae)
hg19_v2_chr6_-_27440460_27440505	0.00532797	SOX9	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chrX_-_85302531_85302570	0.00529187	SOX9	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr14_+_24641062_24641246	0.00529049	SOX9	ENST00000311457.3|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000557806.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000559919.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr3_-_101232019_101232085	0.00520705	SOX9	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr9_-_35111570_35111600	0.00519242	SOX9	ENST00000378561.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000603301.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr3_+_85008089_85008189	0.0051736	SOX9	ENST00000383699.3|CADM2|ENSG00000175161.9|cell adhesion molecule 2
hg19_v2_chr10_+_70748487_70748498	0.00513957	SOX9	ENST00000361983.4|KIAA1279|ENSG00000198954.4|KIAA1279
hg19_v2_chr2_-_100721923_100722045	0.00505631	SOX9	ENST00000356421.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr3_+_44596679_44596726	0.00500979	SOX9	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr16_-_53737722_53737790	0.00493428	SOX9	ENST00000569716.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562588.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562230.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000379925.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000563746.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000568653.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr8_+_24151553_24151590	0.00479157	SOX9	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr8_+_79578282_79578334	0.0047345	SOX9	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr13_-_41593425_41593480	0.00463402	SOX9	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr11_-_35440796_35440916	0.00457424	SOX9	ENST00000278379.3|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr5_+_76012009_76012024	0.00456574	SOX9	ENST00000505600.1|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr1_-_26232522_26232644	0.00455885	SOX9	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr16_-_30798492_30798535	0.00435232	SOX9	ENST00000262525.4|ZNF629|ENSG00000102870.4|zinc finger protein 629
hg19_v2_chr2_-_128568721_128568766	0.00431852	SOX9	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chrX_-_17878827_17878846	0.00413156	SOX9	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr14_+_63671105_63671126	0.00411762	SOX9	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr12_+_54674482_54674564	0.0040476	SOX9	ENST00000547708.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000340913.6|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000551702.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000330752.8|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000547276.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1
hg19_v2_chr7_-_122840015_122840040	0.00397703	SOX9	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr4_+_54243798_54243854	0.00396213	SOX9	ENST00000337488.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000358575.5|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000507922.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr1_-_1243252_1243318	0.0039583	SOX9	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr22_+_50247449_50247515	0.00383515	SOX9	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr6_+_56911476_56911524	0.00343691	SOX9	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr15_-_64673630_64673648	0.00333702	SOX9	ENST00000558008.1|KIAA0101|ENSG00000166803.6|KIAA0101 	ENST00000559519.1|KIAA0101|ENSG00000166803.6|KIAA0101 	ENST00000380258.2|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr12_+_69633407_69633422	0.00321417	SOX9	ENST00000551516.1|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr9_+_112403059_112403079	0.00318593	SOX9	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr11_+_126139005_126139104	0.00316919	SOX9	ENST00000263578.5|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1 	ENST00000442061.2|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1 	ENST00000532125.1|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1
hg19_v2_chr1_-_157014865_157014865	0.00312658	SOX9	ENST00000361409.2|ARHGEF11|ENSG00000132694.14|Rho guanine nucleotide exchange factor (GEF) 11
hg19_v2_chr21_+_34398153_34398250	0.00312624	SOX9	ENST00000382357.3|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2 	ENST00000430860.1|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2 	ENST00000333337.3|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2
hg19_v2_chr1_-_26233423_26233482	0.00307729	SOX9	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr12_-_57882498_57882509	0.00293989	SOX9	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr13_-_27334879_27334930	0.00290604	SOX9	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr18_-_13915530_13915540	0.00285012	SOX9	ENST00000327606.3|MC2R|ENSG00000185231.4|melanocortin 2 receptor (adrenocorticotropic hormone)
hg19_v2_chr14_+_32546274_32546295	0.0026934	SOX9	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr7_-_99277610_99277626	0.00268852	SOX9	ENST00000343703.5|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000222982.4|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000439761.1|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000339843.2|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5
hg19_v2_chr12_-_49076002_49076043	0.00267388	SOX9	ENST00000357861.3|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550347.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000420613.2|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550931.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550870.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr12_-_52887034_52887049	0.00253962	SOX9	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr12_-_6233828_6233843	0.00252431	SOX9	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr14_+_93357749_93357769	0.0024461	SOX9	ENST00000557689.1|RP11-862G15.1|ENSG00000258742.1|RP11-862G15.1
hg19_v2_chr5_-_39425068_39425098	0.00238667	SOX9	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr2_-_111230393_111230393	0.00230159	SOX9	ENST00000447537.2|LIMS3L|ENSG00000257207.4|LIM and senescent cell antigen-like-containing domain protein 3; Uncharacterized protein; cDNA FLJ59124, highly similar to Particularly interesting newCys-His protein; cDNA, FLJ79109, highly similar to Particularly interesting newCys-His protein  	ENST00000413601.2|LIMS3L|ENSG00000256671.5|LIM and senescent cell antigen-like domains 3-like
hg19_v2_chr17_+_54230819_54230871	0.00229257	SOX9	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr17_-_74722672_74722761	0.00220268	SOX9	ENST00000397625.4|JMJD6|ENSG00000070495.10|jumonji domain containing 6 	ENST00000445478.2|JMJD6|ENSG00000070495.10|jumonji domain containing 6
hg19_v2_chr1_+_203096831_203096864	0.00215644	SOX9	ENST00000337894.4|ADORA1|ENSG00000163485.11|adenosine A1 receptor
hg19_v2_chrX_+_70503037_70503095	0.0020542	SOX9	ENST00000535149.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr5_-_87969130_87969157	0.00203915	SOX9	ENST00000505030.1|LINC00461|ENSG00000245526.4|long intergenic non-protein coding RNA 461 	ENST00000500197.2|LINC00461|ENSG00000245526.4|long intergenic non-protein coding RNA 461
hg19_v2_chr15_+_89922345_89922362	0.00189246	SOX9	ENST00000558982.1|LINC00925|ENSG00000255571.2|long intergenic non-protein coding RNA 925
hg19_v2_chr15_+_41624892_41625111	0.0018601	SOX9	ENST00000260359.6|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000450318.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000450592.2|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000559596.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000414849.2|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000560747.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000560177.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1
hg19_v2_chr17_-_56595196_56595266	0.00184326	SOX9	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr11_+_63953587_63953685	0.00178116	SOX9	ENST00000305218.4|STIP1|ENSG00000168439.12|stress-induced-phosphoprotein 1 	ENST00000538945.1|STIP1|ENSG00000168439.12|stress-induced-phosphoprotein 1
hg19_v2_chr17_-_39041479_39041501	0.00150411	SOX9	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr7_+_2671663_2671790	0.00150404	SOX9	ENST00000407643.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr11_-_33183048_33183077	0.00147652	SOX9	ENST00000438862.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr12_+_110011571_110011644	0.00146909	SOX9	ENST00000539696.1|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000228510.3|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000392727.3|MVK|ENSG00000110921.7|mevalonate kinase
hg19_v2_chr12_-_57882577_57882614	0.00136393	SOX9	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr4_-_110723194_110723207	0.00118473	SOX9	ENST00000394635.3|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr15_+_52311398_52311461	0.00108667	SOX9	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr6_+_29691198_29691241	0.000970523	SOX9	ENST00000440587.2|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000434407.2|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F
hg19_v2_chr16_+_1832902_1833008	0.000968201	SOX9	ENST00000262302.9|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000563136.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565987.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000543305.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000568287.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565134.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2
hg19_v2_chr19_+_44100727_44100804	0.000927843	SOX9	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr9_+_139221880_139221932	0.00092683	SOX9	ENST00000392945.3|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1 	ENST00000440944.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr7_+_16685756_16685820	0.000913597	SOX9	ENST00000415365.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000258761.3|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000433922.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000452975.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000405202.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2
hg19_v2_chr7_+_96634850_96634874	0.000845304	SOX9	ENST00000518156.2|DLX6|ENSG00000006377.9|distal-less homeobox 6
hg19_v2_chr12_+_54891495_54891526	0.000750728	SOX9	ENST00000293373.6|NCKAP1L|ENSG00000123338.8|NCK-associated protein 1-like
hg19_v2_chr9_-_123476719_123476810	0.000437171	SOX9	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr16_+_50776021_50776045	0.000336271	SOX9	ENST00000566679.2|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000564634.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000398568.2|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome)
hg19_v2_chr5_+_94890778_94890837	0.000316408	SOX9	ENST00000380009.4|ARSK|ENSG00000164291.12|arylsulfatase family, member K
hg19_v2_chr22_-_21984282_21984359	0.000258426	SOX9	ENST00000398873.3|YDJC|ENSG00000161179.9|YdjC homolog (bacterial) 	ENST00000292778.6|YDJC|ENSG00000161179.9|YdjC homolog (bacterial)
hg19_v2_chr12_-_11036844_11036861	0.000235762	SOX9	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chr4_+_175205038_175205094	0.000173454	SOX9	ENST00000457424.2|CEP44|ENSG00000164118.8|centrosomal protein 44kDa 	ENST00000514712.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr14_-_31495569_31495636	0.000160055	SOX9	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr4_+_54243917_54244006	0.000116828	SOX9	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr14_+_59655369_59655458	0.000102809	SOX9	ENST00000360909.3|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000351081.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000556135.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1
hg19_v2_chr1_+_12834984_12834984	1.49581e-05	SOX9	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
