hg19_v2_chr4_+_145567173_145567296	0.902244	UCACAUU	ENST00000296575.3|HHIP|ENSG00000164161.5|hedgehog interacting protein
hg19_v2_chr11_+_113930291_113930339	0.759062	UCACAUU	ENST00000335953.4|ZBTB16|ENSG00000109906.9|zinc finger and BTB domain containing 16
hg19_v2_chr5_+_82767284_82767310	0.661062	UCACAUU	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr1_-_92351769_92351787	0.613441	UCACAUU	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr5_-_136834982_136835037	0.611472	UCACAUU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr15_+_33010175_33010211	0.541097	UCACAUU	ENST00000300177.4|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560677.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560830.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist
hg19_v2_chr5_+_40679584_40679600	0.503397	UCACAUU	ENST00000302472.3|PTGER4|ENSG00000171522.5|prostaglandin E receptor 4 (subtype EP4)
hg19_v2_chr8_-_122653630_122653661	0.45882	UCACAUU	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr8_-_60031762_60031803	0.421664	UCACAUU	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr1_+_159141397_159141549	0.396624	UCACAUU	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr15_-_48937982_48938046	0.374636	UCACAUU	ENST00000316623.5|FBN1|ENSG00000166147.9|fibrillin 1
hg19_v2_chr8_+_77593448_77593471	0.364884	UCACAUU	ENST00000521891.2|ZFHX4|ENSG00000091656.11|zinc finger homeobox 4
hg19_v2_chr4_+_123747834_123747863	0.354383	UCACAUU	ENST00000264498.3|FGF2|ENSG00000138685.8|fibroblast growth factor 2 (basic)
hg19_v2_chr6_+_151561085_151561146	0.345691	UCACAUU	ENST00000402676.2|AKAP12|ENSG00000131016.12|A kinase (PRKA) anchor protein 12
hg19_v2_chr5_-_41510656_41510713	0.335549	UCACAUU	ENST00000377801.3|PLCXD3|ENSG00000182836.5|phosphatidylinositol-specific phospholipase C, X domain containing 3
hg19_v2_chrX_+_16964794_16964861	0.318168	UCACAUU	ENST00000357277.3|REPS2|ENSG00000169891.13|RALBP1 associated Eps domain containing 2
hg19_v2_chr5_-_157002775_157002790	0.298397	UCACAUU	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr2_+_148778570_148778589	0.293659	UCACAUU	ENST00000407073.1|MBD5|ENSG00000204406.7|methyl-CpG binding domain protein 5
hg19_v2_chrX_-_19140677_19140760	0.292129	UCACAUU	ENST00000357544.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379869.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000360279.4|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379873.2|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379878.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000354791.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379876.1|GPR64|ENSG00000173698.13|G protein-coupled receptor 64
hg19_v2_chr1_-_72748417_72748510	0.285291	UCACAUU	ENST00000357731.5|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr1_+_78956651_78956757	0.282359	UCACAUU	ENST00000370757.3|PTGFR|ENSG00000122420.5|prostaglandin F receptor (FP) 	ENST00000370756.3|PTGFR|ENSG00000122420.5|prostaglandin F receptor (FP)
hg19_v2_chr16_+_88493879_88493879	0.267142	UCACAUU	ENST00000565624.1|ZNF469|ENSG00000225614.2|zinc finger protein 469 	ENST00000437464.1|ZNF469|ENSG00000225614.2|zinc finger protein 469
hg19_v2_chr10_+_31608054_31608156	0.265829	UCACAUU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr3_+_69812877_69812962	0.258711	UCACAUU	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr2_-_200322723_200322819	0.245386	UCACAUU	ENST00000417098.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr9_-_113800317_113800328	0.244758	UCACAUU	ENST00000374431.3|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chrX_+_9754461_9754496	0.242639	UCACAUU	ENST00000380913.3|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr11_-_96076334_96076419	0.241595	UCACAUU	ENST00000524717.1|MAML2|ENSG00000184384.9|mastermind-like 2 (Drosophila)
hg19_v2_chr8_+_16884740_16884804	0.235383	UCACAUU	ENST00000318063.5|MICU3|ENSG00000155970.7|mitochondrial calcium uptake family, member 3
hg19_v2_chr4_+_15004165_15004298	0.234948	UCACAUU	ENST00000538197.1|CPEB2|ENSG00000137449.11|cytoplasmic polyadenylation element binding protein 2 	ENST00000541112.1|CPEB2|ENSG00000137449.11|cytoplasmic polyadenylation element binding protein 2 	ENST00000442003.2|CPEB2|ENSG00000137449.11|cytoplasmic polyadenylation element binding protein 2
hg19_v2_chr5_+_71403061_71403169	0.230102	UCACAUU	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr6_+_114178512_114178586	0.229154	UCACAUU	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr20_-_48099182_48099214	0.221784	UCACAUU	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr3_-_66551351_66551356	0.21798	UCACAUU	ENST00000273261.3|LRIG1|ENSG00000144749.9|leucine-rich repeats and immunoglobulin-like domains 1
hg19_v2_chr5_-_127873659_127873735	0.214282	UCACAUU	ENST00000262464.4|FBN2|ENSG00000138829.6|fibrillin 2
hg19_v2_chr5_+_118407053_118407239	0.213007	UCACAUU	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
hg19_v2_chr9_-_74383799_74383818	0.207308	UCACAUU	ENST00000377044.4|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chr1_-_46598284_46598356	0.206973	UCACAUU	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr4_-_142053952_142053996	0.191628	UCACAUU	ENST00000515673.2|RNF150|ENSG00000170153.6|ring finger protein 150
hg19_v2_chr9_+_4490394_4490446	0.187288	UCACAUU	ENST00000262352.3|SLC1A1|ENSG00000106688.7|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
hg19_v2_chrX_-_154493791_154493874	0.186296	UCACAUU	ENST00000369454.3|RAB39B|ENSG00000155961.4|RAB39B, member RAS oncogene family
hg19_v2_chr10_+_1095416_1095482	0.184104	UCACAUU	ENST00000358220.1|WDR37|ENSG00000047056.10|WD repeat domain 37
hg19_v2_chrX_-_83757399_83757487	0.17866	UCACAUU	ENST00000373177.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000297977.5|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000506585.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000449553.2|HDX|ENSG00000165259.9|highly divergent homeobox
hg19_v2_chr20_+_39657454_39657470	0.176313	UCACAUU	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr16_-_73082274_73082274	0.165703	UCACAUU	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr14_-_61116168_61116180	0.163585	UCACAUU	ENST00000247182.6|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr22_+_38093005_38093067	0.16234	UCACAUU	ENST00000406386.3|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein
hg19_v2_chr16_+_2587998_2588011	0.16152	UCACAUU	ENST00000441549.3|PDPK1|ENSG00000140992.14|3-phosphoinositide dependent protein kinase-1 	ENST00000268673.7|PDPK1|ENSG00000140992.14|3-phosphoinositide dependent protein kinase-1
hg19_v2_chr5_-_73937244_73937274	0.155247	UCACAUU	ENST00000302351.4|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000510316.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000508331.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain)
hg19_v2_chr10_+_103986085_103986085	0.153222	UCACAUU	ENST00000370005.3|ELOVL3|ENSG00000119915.4|ELOVL fatty acid elongase 3
hg19_v2_chr8_+_22457127_22457185	0.151665	UCACAUU	ENST00000289989.5|C8orf58|ENSG00000241852.5|chromosome 8 open reading frame 58
hg19_v2_chr2_-_179343268_179343338	0.15083	UCACAUU	ENST00000424785.2|FKBP7|ENSG00000079150.13|FK506 binding protein 7
hg19_v2_chr21_+_47401650_47401692	0.150791	UCACAUU	ENST00000361866.3|COL6A1|ENSG00000142156.10|collagen, type VI, alpha 1
hg19_v2_chr11_+_133938820_133938914	0.150779	UCACAUU	ENST00000299106.4|JAM3|ENSG00000166086.8|junctional adhesion molecule 3 	ENST00000529443.2|JAM3|ENSG00000166086.8|junctional adhesion molecule 3
hg19_v2_chr5_-_131826457_131826514	0.141118	UCACAUU	ENST00000437654.1|IRF1|ENSG00000125347.9|interferon regulatory factor 1 	ENST00000245414.4|IRF1|ENSG00000125347.9|interferon regulatory factor 1
hg19_v2_chr8_-_91658303_91658327	0.136482	UCACAUU	ENST00000458549.2|TMEM64|ENSG00000180694.9|transmembrane protein 64
hg19_v2_chr5_+_149887672_149887698	0.134538	UCACAUU	ENST00000261797.6|NDST1|ENSG00000070614.10|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
hg19_v2_chr5_+_32788945_32788945	0.133558	UCACAUU	ENST00000326958.1|AC026703.1|ENSG00000181495.1|AC026703.1
hg19_v2_chr12_+_32655048_32655108	0.130128	UCACAUU	ENST00000427716.2|FGD4|ENSG00000139132.10|FYVE, RhoGEF and PH domain containing 4 	ENST00000266482.3|FGD4|ENSG00000139132.10|FYVE, RhoGEF and PH domain containing 4
hg19_v2_chr4_-_129208940_129208976	0.129646	UCACAUU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr2_+_152214098_152214115	0.125019	UCACAUU	ENST00000243347.3|TNFAIP6|ENSG00000123610.3|tumor necrosis factor, alpha-induced protein 6
hg19_v2_chr15_-_37390482_37390572	0.124864	UCACAUU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr3_+_187930719_187930729	0.123328	UCACAUU	ENST00000312675.4|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr10_+_73724123_73724206	0.120802	UCACAUU	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr2_-_101034070_101034147	0.120235	UCACAUU	ENST00000264249.3|CHST10|ENSG00000115526.6|carbohydrate sulfotransferase 10
hg19_v2_chr4_-_89619386_89619386	0.119873	UCACAUU	ENST00000323061.5|NAP1L5|ENSG00000177432.6|nucleosome assembly protein 1-like 5
hg19_v2_chr1_-_24194771_24194851	0.119665	UCACAUU	ENST00000374479.3|FUCA1|ENSG00000179163.11|fucosidase, alpha-L- 1, tissue
hg19_v2_chr1_+_65730385_65730468	0.119391	UCACAUU	ENST00000263441.7|DNAJC6|ENSG00000116675.11|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENST00000395325.3|DNAJC6|ENSG00000116675.11|DnaJ (Hsp40) homolog, subfamily C, member 6
hg19_v2_chr4_+_160188889_160188968	0.117219	UCACAUU	ENST00000264431.4|RAPGEF2|ENSG00000109756.4|Rap guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr18_-_70535177_70535254	0.117213	UCACAUU	ENST00000327305.6|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr1_-_84464780_84464862	0.117122	UCACAUU	ENST00000260505.8|TTLL7|ENSG00000137941.12|tubulin tyrosine ligase-like family, member 7
hg19_v2_chr4_+_124320665_124320702	0.116657	UCACAUU	ENST00000394339.2|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr5_+_173315283_173315335	0.114895	UCACAUU	ENST00000265085.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chr21_+_44394620_44394737	0.112825	UCACAUU	ENST00000291547.5|PKNOX1|ENSG00000160199.10|PBX/knotted 1 homeobox 1
hg19_v2_chr5_+_32711419_32711540	0.109211	UCACAUU	ENST00000265074.8|NPR3|ENSG00000113389.11|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
hg19_v2_chr2_-_40679186_40679297	0.107127	UCACAUU	ENST00000406785.2|SLC8A1|ENSG00000183023.14|solute carrier family 8 (sodium/calcium exchanger), member 1
hg19_v2_chr4_-_125633876_125633897	0.107116	UCACAUU	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr19_-_46974741_46974826	0.103097	UCACAUU	ENST00000313683.10|PNMAL1|ENSG00000182013.13|paraneoplastic Ma antigen family-like 1 	ENST00000602246.1|PNMAL1|ENSG00000182013.13|paraneoplastic Ma antigen family-like 1
hg19_v2_chr2_+_24714729_24714927	0.101522	UCACAUU	ENST00000406961.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1 	ENST00000405141.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1
hg19_v2_chr3_+_155588300_155588369	0.101019	UCACAUU	ENST00000496455.2|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr2_-_47168906_47168994	0.100694	UCACAUU	ENST00000444761.2|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2 	ENST00000409147.1|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2
hg19_v2_chr20_+_5107420_5107432	0.0992006	UCACAUU	ENST00000460006.1|CDS2|ENSG00000101290.9|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
hg19_v2_chr2_-_45236540_45236577	0.0983681	UCACAUU	ENST00000303077.6|SIX2|ENSG00000170577.7|SIX homeobox 2
hg19_v2_chr16_-_17564738_17564834	0.0976472	UCACAUU	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr6_-_24721054_24721074	0.0959286	UCACAUU	ENST00000378119.4|C6orf62|ENSG00000112308.8|chromosome 6 open reading frame 62
hg19_v2_chr1_+_198126093_198126207	0.0953489	UCACAUU	ENST00000367385.4|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000442588.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000538004.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7
hg19_v2_chr5_-_158526756_158526797	0.0922406	UCACAUU	ENST00000313708.6|EBF1|ENSG00000164330.12|early B-cell factor 1 	ENST00000517373.1|EBF1|ENSG00000164330.12|early B-cell factor 1
hg19_v2_chr1_+_78470530_78470551	0.0921809	UCACAUU	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr15_+_52043758_52043809	0.0919861	UCACAUU	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr3_+_88188254_88188254	0.0909505	UCACAUU	ENST00000309495.5|ZNF654|ENSG00000175105.5|zinc finger protein 654
hg19_v2_chr18_+_67956135_67956144	0.0908529	UCACAUU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr15_-_61521495_61521518	0.0899859	UCACAUU	ENST00000335670.6|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr12_-_10766184_10766222	0.0890683	UCACAUU	ENST00000539554.1|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000381881.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000320756.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila)
hg19_v2_chr3_-_52713729_52713784	0.0885324	UCACAUU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr2_-_160919112_160919162	0.0872418	UCACAUU	ENST00000283243.7|PLA2R1|ENSG00000153246.7|phospholipase A2 receptor 1, 180kDa 	ENST00000392771.1|PLA2R1|ENSG00000153246.7|phospholipase A2 receptor 1, 180kDa
hg19_v2_chr7_+_116312411_116312502	0.0858207	UCACAUU	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr21_+_39628655_39628672	0.0855195	UCACAUU	ENST00000398925.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15 	ENST00000398928.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15 	ENST00000328656.4|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15 	ENST00000443341.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr1_+_164528866_164528877	0.0816978	UCACAUU	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr16_+_24741013_24741058	0.0807626	UCACAUU	ENST00000315183.7|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A 	ENST00000395799.3|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A
hg19_v2_chr9_+_100263912_100263988	0.0805271	UCACAUU	ENST00000259365.4|TMOD1|ENSG00000136842.9|tropomodulin 1
hg19_v2_chrX_+_118108571_118108589	0.0800696	UCACAUU	ENST00000304778.7|LONRF3|ENSG00000175556.12|LON peptidase N-terminal domain and ring finger 3
hg19_v2_chrX_+_115567767_115567790	0.0796035	UCACAUU	ENST00000371900.4|SLC6A14|ENSG00000087916.7|solute carrier family 6 (amino acid transporter), member 14
hg19_v2_chr12_-_104234966_104234984	0.0793174	UCACAUU	ENST00000392876.3|NT5DC3|ENSG00000111696.7|5'-nucleotidase domain containing 3
hg19_v2_chr15_-_55881135_55881192	0.0792731	UCACAUU	ENST00000302000.6|PYGO1|ENSG00000171016.7|pygopus family PHD finger 1
hg19_v2_chr7_+_65338230_65338293	0.0782719	UCACAUU	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr6_-_116575226_116575278	0.0770593	UCACAUU	ENST00000420283.1|TSPYL4|ENSG00000187189.9|TSPY-like 4
hg19_v2_chr16_-_19896220_19896239	0.0769067	UCACAUU	ENST00000562469.1|GPRC5B|ENSG00000167191.7|G protein-coupled receptor, family C, group 5, member B 	ENST00000300571.2|GPRC5B|ENSG00000167191.7|G protein-coupled receptor, family C, group 5, member B
hg19_v2_chr2_-_86564776_86564813	0.075944	UCACAUU	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr11_-_66115032_66115163	0.0758804	UCACAUU	ENST00000311181.4|B3GNT1|ENSG00000174684.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
hg19_v2_chr9_-_123639600_123639627	0.074852	UCACAUU	ENST00000373896.3|PHF19|ENSG00000119403.9|PHD finger protein 19
hg19_v2_chr2_+_172950227_172950264	0.0747788	UCACAUU	ENST00000341900.6|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr6_+_87865262_87865339	0.0744164	UCACAUU	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr10_+_93683519_93683594	0.0740011	UCACAUU	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr1_+_218519577_218519594	0.0736662	UCACAUU	ENST00000366930.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2 	ENST00000366929.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2
hg19_v2_chr1_-_211307315_211307357	0.0735503	UCACAUU	ENST00000271751.4|KCNH1|ENSG00000143473.7|potassium voltage-gated channel, subfamily H (eag-related), member 1
hg19_v2_chr9_+_91003271_91003386	0.0730705	UCACAUU	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chrX_+_73641286_73641400	0.0730408	UCACAUU	ENST00000587091.1|SLC16A2|ENSG00000147100.5|solute carrier family 16, member 2 (thyroid hormone transporter)
hg19_v2_chr17_-_33760164_33760218	0.0723383	UCACAUU	ENST00000445092.1|SLFN12|ENSG00000172123.8|schlafen family member 12 	ENST00000394562.1|SLFN12|ENSG00000172123.8|schlafen family member 12 	ENST00000447040.2|SLFN12|ENSG00000172123.8|schlafen family member 12
hg19_v2_chr2_-_158485387_158485517	0.0714851	UCACAUU	ENST00000243349.8|ACVR1C|ENSG00000123612.11|activin A receptor, type IC
hg19_v2_chr8_+_27168988_27169021	0.0701009	UCACAUU	ENST00000397501.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000338238.4|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000544172.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta
hg19_v2_chr8_-_71316021_71316068	0.0697752	UCACAUU	ENST00000452400.2|NCOA2|ENSG00000140396.8|nuclear receptor coactivator 2
hg19_v2_chr22_+_40573921_40573946	0.0692993	UCACAUU	ENST00000454349.2|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B 	ENST00000335727.9|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B
hg19_v2_chr8_-_82024290_82024310	0.0688737	UCACAUU	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr1_+_26798955_26799010	0.0683188	UCACAUU	ENST00000361427.5|HMGN2|ENSG00000198830.6|high mobility group nucleosomal binding domain 2
hg19_v2_chr2_+_170683942_170683972	0.0681055	UCACAUU	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr16_+_67596310_67596353	0.0679902	UCACAUU	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr15_-_58358607_58358621	0.0675055	UCACAUU	ENST00000249750.4|ALDH1A2|ENSG00000128918.10|aldehyde dehydrogenase 1 family, member A2
hg19_v2_chr5_-_178054105_178054119	0.0673317	UCACAUU	ENST00000316308.4|CLK4|ENSG00000113240.8|CDC-like kinase 4
hg19_v2_chr1_-_27816556_27816572	0.0667085	UCACAUU	ENST00000536657.1|WASF2|ENSG00000158195.6|WAS protein family, member 2
hg19_v2_chr12_+_66217911_66218018	0.066151	UCACAUU	ENST00000403681.2|HMGA2|ENSG00000149948.9|high mobility group AT-hook 2
hg19_v2_chr19_-_31840438_31840470	0.0660553	UCACAUU	ENST00000240587.4|TSHZ3|ENSG00000121297.6|teashirt zinc finger homeobox 3
hg19_v2_chr6_-_137113604_137113666	0.0650327	UCACAUU	ENST00000359015.4|MAP3K5|ENSG00000197442.8|mitogen-activated protein kinase kinase kinase 5
hg19_v2_chr5_+_127419449_127419540	0.0645169	UCACAUU	ENST00000262461.2|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2 	ENST00000343225.4|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2
hg19_v2_chr7_-_93520259_93520316	0.0637946	UCACAUU	ENST00000222543.5|TFPI2|ENSG00000105825.7|tissue factor pathway inhibitor 2
hg19_v2_chr1_+_118148556_118148681	0.0637329	UCACAUU	ENST00000369448.3|FAM46C|ENSG00000183508.4|family with sequence similarity 46, member C
hg19_v2_chr7_-_97881429_97881563	0.0630273	UCACAUU	ENST00000420697.1|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000379795.3|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000415086.1|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000542604.1|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000447648.2|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1
hg19_v2_chr17_+_45608430_45608490	0.061903	UCACAUU	ENST00000322157.4|NPEPPS|ENSG00000141279.11|aminopeptidase puromycin sensitive
hg19_v2_chr16_-_4897266_4897343	0.0615129	UCACAUU	ENST00000591451.1|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000436648.5|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000381983.3|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000588297.1|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000321919.9|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis)
hg19_v2_chr17_+_60704762_60704762	0.0604927	UCACAUU	ENST00000303375.5|MRC2|ENSG00000011028.9|mannose receptor, C type 2
hg19_v2_chrX_+_46433193_46433237	0.0587484	UCACAUU	ENST00000276055.3|CHST7|ENSG00000147119.3|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7
hg19_v2_chr16_-_49315731_49315754	0.0584839	UCACAUU	ENST00000219197.6|CBLN1|ENSG00000102924.7|cerebellin 1 precursor
hg19_v2_chr11_+_109964087_109964123	0.0582214	UCACAUU	ENST00000278590.3|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr7_+_73082152_73082223	0.0561161	UCACAUU	ENST00000324941.4|VPS37D|ENSG00000176428.5|vacuolar protein sorting 37 homolog D (S. cerevisiae) 	ENST00000451519.1|VPS37D|ENSG00000176428.5|vacuolar protein sorting 37 homolog D (S. cerevisiae)
hg19_v2_chr1_+_154377669_154377699	0.054884	UCACAUU	ENST00000368485.3|IL6R|ENSG00000160712.8|interleukin 6 receptor 	ENST00000344086.4|IL6R|ENSG00000160712.8|interleukin 6 receptor
hg19_v2_chr17_+_27717415_27717618	0.0548597	UCACAUU	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr11_+_32112431_32112454	0.0547028	UCACAUU	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr8_-_124553437_124553453	0.0544422	UCACAUU	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr8_-_26371608_26371608	0.0542196	UCACAUU	ENST00000522362.2|PNMA2|ENSG00000240694.4|paraneoplastic Ma antigen 2
hg19_v2_chr1_+_24286287_24286326	0.0541425	UCACAUU	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr8_+_126442563_126442624	0.0529406	UCACAUU	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr10_-_65225722_65225755	0.0523754	UCACAUU	ENST00000399251.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr6_+_119215308_119215391	0.0516693	UCACAUU	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr13_+_96743093_96743093	0.0505536	UCACAUU	ENST00000376705.2|HS6ST3|ENSG00000185352.7|heparan sulfate 6-O-sulfotransferase 3
hg19_v2_chr4_-_140098339_140098392	0.050453	UCACAUU	ENST00000394235.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr20_+_43595115_43595220	0.0502825	UCACAUU	ENST00000372806.3|STK4|ENSG00000101109.7|serine/threonine kinase 4 	ENST00000396731.4|STK4|ENSG00000101109.7|serine/threonine kinase 4 	ENST00000372801.1|STK4|ENSG00000101109.7|serine/threonine kinase 4 	ENST00000499879.2|STK4|ENSG00000101109.7|serine/threonine kinase 4
hg19_v2_chr3_-_18466787_18466861	0.050098	UCACAUU	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr20_+_43991668_43991853	0.0496174	UCACAUU	ENST00000243918.5|SYS1|ENSG00000204070.5|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) 	ENST00000426004.1|SYS1|ENSG00000204070.5|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
hg19_v2_chr4_-_141677267_141677291	0.0495867	UCACAUU	ENST00000442267.2|TBC1D9|ENSG00000109436.7|TBC1 domain family, member 9 (with GRAM domain)
hg19_v2_chr17_-_33814851_33814890	0.049532	UCACAUU	ENST00000449046.1|SLFN12L|ENSG00000205045.4|schlafen family member 12-like 	ENST00000260908.7|SLFN12L|ENSG00000205045.4|schlafen family member 12-like
hg19_v2_chr8_-_94753229_94753263	0.0485302	UCACAUU	ENST00000518597.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B 	ENST00000399300.2|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B 	ENST00000517700.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr1_-_20812690_20812763	0.048435	UCACAUU	ENST00000375078.3|CAMK2N1|ENSG00000162545.5|calcium/calmodulin-dependent protein kinase II inhibitor 1
hg19_v2_chr2_-_164592497_164592573	0.048259	UCACAUU	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr10_-_102279586_102279711	0.0482553	UCACAUU	ENST00000370345.3|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000451524.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000370329.5|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae)
hg19_v2_chr2_+_220042933_220042985	0.048125	UCACAUU	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr2_+_200775971_200775988	0.0479196	UCACAUU	ENST00000319974.5|C2orf69|ENSG00000178074.5|chromosome 2 open reading frame 69
hg19_v2_chr1_-_182641037_182641068	0.0478797	UCACAUU	ENST00000483095.2|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr14_-_80677970_80678051	0.0478659	UCACAUU	ENST00000438257.4|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr3_+_134204881_134204913	0.0473017	UCACAUU	ENST00000511574.1|CEP63|ENSG00000182923.12|centrosomal protein 63kDa 	ENST00000337090.3|CEP63|ENSG00000182923.12|centrosomal protein 63kDa 	ENST00000383229.3|CEP63|ENSG00000182923.12|centrosomal protein 63kDa
hg19_v2_chr12_+_122242597_122242638	0.0467443	UCACAUU	ENST00000267197.5|SETD1B|ENSG00000139718.6|SET domain containing 1B
hg19_v2_chr9_+_32384617_32384709	0.0466737	UCACAUU	ENST00000379923.1|ACO1|ENSG00000122729.14|aconitase 1, soluble 	ENST00000309951.6|ACO1|ENSG00000122729.14|aconitase 1, soluble 	ENST00000541043.1|ACO1|ENSG00000122729.14|aconitase 1, soluble
hg19_v2_chr3_+_62304712_62304732	0.0465593	UCACAUU	ENST00000494481.1|C3orf14|ENSG00000114405.6|chromosome 3 open reading frame 14
hg19_v2_chr9_+_139221880_139221932	0.0464931	UCACAUU	ENST00000392945.3|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1 	ENST00000440944.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr11_+_32914579_32914724	0.0463746	UCACAUU	ENST00000399302.2|QSER1|ENSG00000060749.10|glutamine and serine rich 1
hg19_v2_chr18_+_67068228_67068291	0.0463544	UCACAUU	ENST00000382713.5|DOK6|ENSG00000206052.6|docking protein 6
hg19_v2_chr15_-_56209306_56209344	0.046332	UCACAUU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr17_-_33416231_33416338	0.0462557	UCACAUU	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr5_+_65222299_65222361	0.0461625	UCACAUU	ENST00000284037.5|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr8_-_103668114_103668134	0.0459634	UCACAUU	ENST00000285407.6|KLF10|ENSG00000155090.10|Kruppel-like factor 10
hg19_v2_chr20_+_32077880_32077951	0.0455334	UCACAUU	ENST00000342704.6|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000375279.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr7_-_14029515_14029642	0.0453805	UCACAUU	ENST00000430479.1|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000405218.2|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000343495.5|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr4_+_129730779_129730826	0.0447909	UCACAUU	ENST00000226319.6|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chr12_+_107349497_107349578	0.0446924	UCACAUU	ENST00000548125.1|C12orf23|ENSG00000151135.5|chromosome 12 open reading frame 23 	ENST00000280756.4|C12orf23|ENSG00000151135.5|chromosome 12 open reading frame 23
hg19_v2_chr12_+_22778009_22778112	0.0438929	UCACAUU	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr10_+_70480963_70481010	0.0438062	UCACAUU	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr14_-_35182994_35183034	0.043615	UCACAUU	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr6_+_45389893_45389914	0.0432053	UCACAUU	ENST00000371432.3|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr10_-_70166946_70166950	0.0431273	UCACAUU	ENST00000388768.2|RUFY2|ENSG00000204130.8|RUN and FYVE domain containing 2
hg19_v2_chr7_-_120498357_120498456	0.043074	UCACAUU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr10_+_43633914_43633935	0.0430084	UCACAUU	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr1_-_165414414_165414433	0.0423975	UCACAUU	ENST00000359842.5|RXRG|ENSG00000143171.8|retinoid X receptor, gamma
hg19_v2_chr3_+_33155444_33155492	0.0422897	UCACAUU	ENST00000320954.6|CRTAP|ENSG00000170275.10|cartilage associated protein
hg19_v2_chr5_-_176778523_176778684	0.0422869	UCACAUU	ENST00000513877.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2 	ENST00000515209.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2 	ENST00000514458.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2 	ENST00000502560.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2
hg19_v2_chr9_-_135230336_135230398	0.0415819	UCACAUU	ENST00000224140.5|SETX|ENSG00000107290.9|senataxin 	ENST00000372169.2|SETX|ENSG00000107290.9|senataxin 	ENST00000393220.1|SETX|ENSG00000107290.9|senataxin
hg19_v2_chr19_-_5622991_5622991	0.0414308	UCACAUU	ENST00000252542.4|SAFB2|ENSG00000130254.7|scaffold attachment factor B2
hg19_v2_chr2_+_43864387_43864472	0.0413511	UCACAUU	ENST00000282406.4|PLEKHH2|ENSG00000152527.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
hg19_v2_chr1_+_112938803_112938860	0.0406336	UCACAUU	ENST00000271277.6|CTTNBP2NL|ENSG00000143079.10|CTTNBP2 N-terminal like
hg19_v2_chr2_-_1748214_1748295	0.0404088	UCACAUU	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr20_+_31407692_31407709	0.0404074	UCACAUU	ENST00000375571.5|MAPRE1|ENSG00000101367.8|microtubule-associated protein, RP/EB family, member 1
hg19_v2_chr1_+_179923873_179923954	0.0403174	UCACAUU	ENST00000367607.3|CEP350|ENSG00000135837.11|centrosomal protein 350kDa 	ENST00000491495.2|CEP350|ENSG00000135837.11|centrosomal protein 350kDa
hg19_v2_chr14_+_73525144_73525224	0.0401346	UCACAUU	ENST00000261973.7|RBM25|ENSG00000119707.9|RNA binding motif protein 25 	ENST00000540173.1|RBM25|ENSG00000119707.9|RNA binding motif protein 25
hg19_v2_chr2_-_70475730_70475798	0.0401223	UCACAUU	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr3_-_87040233_87040257	0.0397457	UCACAUU	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr14_-_74485960_74486035	0.0395511	UCACAUU	ENST00000556242.1|ENTPD5|ENSG00000187097.8|ectonucleoside triphosphate diphosphohydrolase 5 	ENST00000334696.6|ENTPD5|ENSG00000187097.8|ectonucleoside triphosphate diphosphohydrolase 5
hg19_v2_chr17_-_36956155_36956223	0.0394456	UCACAUU	ENST00000269554.3|PIP4K2B|ENSG00000141720.7|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
hg19_v2_chr1_-_89531041_89531050	0.0393247	UCACAUU	ENST00000370473.4|GBP1|ENSG00000117228.9|guanylate binding protein 1, interferon-inducible
hg19_v2_chr20_+_3451650_3451729	0.0390157	UCACAUU	ENST00000262919.5|ATRN|ENSG00000088812.13|attractin
hg19_v2_chr12_+_96588143_96588185	0.0388625	UCACAUU	ENST00000228741.3|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2) 	ENST00000547249.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr12_+_72233487_72233563	0.0384183	UCACAUU	ENST00000482439.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000550746.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000491063.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000319106.8|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000485960.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000393309.3|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15
hg19_v2_chr10_+_90750378_90750444	0.0384017	UCACAUU	ENST00000355740.2|FAS|ENSG00000026103.15|Fas cell surface death receptor 	ENST00000352159.4|FAS|ENSG00000026103.15|Fas cell surface death receptor
hg19_v2_chr3_-_28390581_28390618	0.0381885	UCACAUU	ENST00000479665.1|AZI2|ENSG00000163512.9|5-azacytidine induced 2
hg19_v2_chr12_-_120554534_120554585	0.0381442	UCACAUU	ENST00000538903.1|RAB35|ENSG00000111737.7|RAB35, member RAS oncogene family 	ENST00000534951.1|RAB35|ENSG00000111737.7|RAB35, member RAS oncogene family
hg19_v2_chr5_+_143584814_143584840	0.0380054	UCACAUU	ENST00000507359.3|KCTD16|ENSG00000183775.6|potassium channel tetramerization domain containing 16
hg19_v2_chr3_-_71834318_71834357	0.0379568	UCACAUU	ENST00000353065.3|PROK2|ENSG00000163421.4|prokineticin 2
hg19_v2_chr8_+_11141925_11141937	0.0379365	UCACAUU	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr1_-_214724566_214724566	0.037754	UCACAUU	ENST00000366956.5|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr14_+_79745746_79745762	0.0374059	UCACAUU	ENST00000281127.7|NRXN3|ENSG00000021645.13|neurexin 3
hg19_v2_chr15_-_71055878_71055932	0.0362656	UCACAUU	ENST00000322954.6|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr17_+_37026106_37026123	0.0357613	UCACAUU	ENST00000318008.6|LASP1|ENSG00000002834.13|LIM and SH3 protein 1
hg19_v2_chrX_+_110339439_110339605	0.0351931	UCACAUU	ENST00000372010.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000519681.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000372007.5|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3
hg19_v2_chr19_-_58662139_58662182	0.0347478	UCACAUU	ENST00000598312.1|ZNF329|ENSG00000181894.10|zinc finger protein 329
hg19_v2_chr13_+_43597269_43597339	0.0345894	UCACAUU	ENST00000379221.2|DNAJC15|ENSG00000120675.4|DnaJ (Hsp40) homolog, subfamily C, member 15
hg19_v2_chr4_+_184020398_184020463	0.0345338	UCACAUU	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr17_-_16472483_16472533	0.034508	UCACAUU	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr17_-_1465924_1466129	0.0342622	UCACAUU	ENST00000573231.1|PITPNA|ENSG00000174238.10|phosphatidylinositol transfer protein, alpha 	ENST00000576722.1|PITPNA|ENSG00000174238.10|phosphatidylinositol transfer protein, alpha 	ENST00000576761.1|PITPNA|ENSG00000174238.10|phosphatidylinositol transfer protein, alpha 	ENST00000576010.2|PITPNA|ENSG00000174238.10|phosphatidylinositol transfer protein, alpha 	ENST00000313486.7|PITPNA|ENSG00000174238.10|phosphatidylinositol transfer protein, alpha 	ENST00000539476.1|PITPNA|ENSG00000174238.10|phosphatidylinositol transfer protein, alpha
hg19_v2_chr1_-_113161730_113161811	0.0341431	UCACAUU	ENST00000544629.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000543570.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000360743.4|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000490067.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000343210.7|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369666.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chr12_-_42538657_42538720	0.0339755	UCACAUU	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr13_+_73302047_73302073	0.033312	UCACAUU	ENST00000377814.2|BORA|ENSG00000136122.11|bora, aurora kinase A activator 	ENST00000377815.3|BORA|ENSG00000136122.11|bora, aurora kinase A activator 	ENST00000390667.5|BORA|ENSG00000136122.11|bora, aurora kinase A activator
hg19_v2_chr12_-_96794143_96794264	0.0332038	UCACAUU	ENST00000543119.2|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr17_+_58677539_58677610	0.0331849	UCACAUU	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr1_-_225615599_225615802	0.0327007	UCACAUU	ENST00000421383.1|LBR|ENSG00000143815.10|lamin B receptor 	ENST00000272163.4|LBR|ENSG00000143815.10|lamin B receptor
hg19_v2_chr5_+_133984462_133984514	0.0323429	UCACAUU	ENST00000398844.2|SEC24A|ENSG00000113615.8|SEC24 family member A 	ENST00000322887.4|SEC24A|ENSG00000113615.8|SEC24 family member A
hg19_v2_chr5_-_78281603_78281617	0.0322447	UCACAUU	ENST00000264914.4|ARSB|ENSG00000113273.11|arylsulfatase B
hg19_v2_chr5_+_135468516_135468621	0.0322283	UCACAUU	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr7_+_99613195_99613206	0.0321921	UCACAUU	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr2_+_173940442_173940625	0.0321636	UCACAUU	ENST00000409176.2|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT  	ENST00000338983.3|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT  	ENST00000431503.2|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr8_-_93115445_93115462	0.0320282	UCACAUU	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr12_+_100967420_100967502	0.0318352	UCACAUU	ENST00000266754.5|GAS2L3|ENSG00000139354.6|growth arrest-specific 2 like 3 	ENST00000547754.1|GAS2L3|ENSG00000139354.6|growth arrest-specific 2 like 3
hg19_v2_chr14_+_55518349_55518423	0.0313264	UCACAUU	ENST00000395468.4|MAPK1IP1L|ENSG00000168175.10|mitogen-activated protein kinase 1 interacting protein 1-like
hg19_v2_chr22_+_21213259_21213271	0.0312458	UCACAUU	ENST00000215730.7|SNAP29|ENSG00000099940.7|synaptosomal-associated protein, 29kDa
hg19_v2_chr10_+_115438920_115438963	0.0312382	UCACAUU	ENST00000429617.1|CASP7|ENSG00000165806.15|caspase 7, apoptosis-related cysteine peptidase 	ENST00000369331.4|CASP7|ENSG00000165806.15|caspase 7, apoptosis-related cysteine peptidase
hg19_v2_chr11_+_69455855_69455974	0.0310837	UCACAUU	ENST00000227507.2|CCND1|ENSG00000110092.3|cyclin D1 	ENST00000536559.1|CCND1|ENSG00000110092.3|cyclin D1
hg19_v2_chr17_+_28705921_28706000	0.0309936	UCACAUU	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr16_-_66584059_66584315	0.0308935	UCACAUU	ENST00000417693.3|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000544898.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000569718.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000527284.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000299697.7|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000451102.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr18_-_43547223_43547312	0.0306982	UCACAUU	ENST00000282041.5|EPG5|ENSG00000152223.8|ectopic P-granules autophagy protein 5 homolog (C. elegans)
hg19_v2_chr9_+_15553055_15553101	0.0306792	UCACAUU	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr8_+_37620097_37620146	0.0301947	UCACAUU	ENST00000328195.3|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial) 	ENST00000523358.1|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial) 	ENST00000523187.1|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial)
hg19_v2_chr5_-_107717058_107717155	0.0299882	UCACAUU	ENST00000359660.5|FBXL17|ENSG00000145743.11|F-box and leucine-rich repeat protein 17
hg19_v2_chr5_+_126112794_126112928	0.0298376	UCACAUU	ENST00000261366.5|LMNB1|ENSG00000113368.7|lamin B1 	ENST00000395354.1|LMNB1|ENSG00000113368.7|lamin B1
hg19_v2_chr7_-_44924939_44924993	0.0297359	UCACAUU	ENST00000395699.2|PURB|ENSG00000146676.5|purine-rich element binding protein B
hg19_v2_chr10_-_70287231_70287290	0.029505	UCACAUU	ENST00000609923.1|SLC25A16|ENSG00000122912.10|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
hg19_v2_chr1_+_36396677_36396749	0.0294559	UCACAUU	ENST00000373191.4|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3 	ENST00000397828.2|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr15_-_60690163_60690242	0.029141	UCACAUU	ENST00000558998.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000560165.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000557986.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000559780.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000559467.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000559956.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000332680.4|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000396024.3|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000421017.2|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000560466.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000558132.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000559113.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000557906.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000558558.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000560468.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000559370.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000558169.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000559725.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000558985.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000451270.2|ANXA2|ENSG00000182718.12|annexin A2
hg19_v2_chr17_-_33448468_33448513	0.0289313	UCACAUU	ENST00000591723.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein  	ENST00000587405.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000593039.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein
hg19_v2_chr9_-_16870704_16870841	0.0289028	UCACAUU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr8_-_22550815_22550844	0.0287418	UCACAUU	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr3_+_30648066_30648167	0.0287134	UCACAUU	ENST00000359013.4|TGFBR2|ENSG00000163513.13|transforming growth factor, beta receptor II (70/80kDa)
hg19_v2_chr14_+_39736299_39736412	0.0285812	UCACAUU	ENST00000341502.5|CTAGE5|ENSG00000150527.12|CTAGE family, member 5 	ENST00000396158.2|CTAGE5|ENSG00000150527.12|CTAGE family, member 5 	ENST00000280083.3|CTAGE5|ENSG00000150527.12|CTAGE family, member 5
hg19_v2_chr3_+_150804676_150804697	0.0283106	UCACAUU	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr17_-_65241281_65241326	0.0282362	UCACAUU	ENST00000358691.5|HELZ|ENSG00000198265.7|helicase with zinc finger 	ENST00000580168.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr2_-_10952922_10952970	0.0280809	UCACAUU	ENST00000272227.3|PDIA6|ENSG00000143870.8|protein disulfide isomerase family A, member 6
hg19_v2_chr10_-_98945677_98945729	0.0279803	UCACAUU	ENST00000266058.4|SLIT1|ENSG00000187122.12|slit homolog 1 (Drosophila) 	ENST00000371041.3|SLIT1|ENSG00000187122.12|slit homolog 1 (Drosophila)
hg19_v2_chr8_-_67579418_67579498	0.0279401	UCACAUU	ENST00000310421.4|VCPIP1|ENSG00000175073.7|valosin containing protein (p97)/p47 complex interacting protein 1
hg19_v2_chr6_-_52926539_52926668	0.0279329	UCACAUU	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr1_+_162467595_162467655	0.0278592	UCACAUU	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chr3_-_138665969_138665993	0.0277147	UCACAUU	ENST00000330315.3|FOXL2|ENSG00000183770.5|forkhead box L2
hg19_v2_chr3_+_50712672_50712703	0.0266219	UCACAUU	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr6_+_4021554_4021656	0.026329	UCACAUU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr8_+_1449532_1449532	0.0262439	UCACAUU	ENST00000421627.2|DLGAP2|ENSG00000198010.7|discs, large (Drosophila) homolog-associated protein 2
hg19_v2_chr5_+_162864575_162864620	0.0260358	UCACAUU	ENST00000512163.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000393929.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000340828.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511683.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510097.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511490.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510664.1|CCNG1|ENSG00000113328.14|cyclin G1
hg19_v2_chr17_+_35766965_35767030	0.0259596	UCACAUU	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr19_+_45973120_45973171	0.0257715	UCACAUU	ENST00000592811.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000586615.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr5_+_112312416_112312440	0.0257179	UCACAUU	ENST00000389063.2|DCP2|ENSG00000172795.11|decapping mRNA 2
hg19_v2_chr1_-_231473578_231473619	0.0256405	UCACAUU	ENST00000360394.2|EXOC8|ENSG00000116903.6|exocyst complex component 8 	ENST00000366645.1|EXOC8|ENSG00000116903.6|exocyst complex component 8
hg19_v2_chr6_-_46138676_46138726	0.0255255	UCACAUU	ENST00000371383.2|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 	ENST00000230565.3|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
hg19_v2_chr11_+_74660278_74660334	0.0253769	UCACAUU	ENST00000263672.6|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae) 	ENST00000530257.1|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae) 	ENST00000526361.1|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae) 	ENST00000532972.1|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae)
hg19_v2_chr8_-_57123815_57123867	0.0253005	UCACAUU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr9_-_73736511_73736546	0.0252971	UCACAUU	ENST00000377110.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377111.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr1_-_225840747_225840860	0.0248672	UCACAUU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr13_-_103053946_103054124	0.0246825	UCACAUU	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr4_-_104640973_104640973	0.0242962	UCACAUU	ENST00000304883.2|TACR3|ENSG00000169836.4|tachykinin receptor 3
hg19_v2_chr22_-_31885727_31885923	0.0242675	UCACAUU	ENST00000330125.5|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1 	ENST00000344710.5|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1 	ENST00000397518.1|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1
hg19_v2_chr11_+_12695944_12695989	0.0239324	UCACAUU	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr4_+_72204755_72204778	0.023846	UCACAUU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr4_-_103748880_103749047	0.0235192	UCACAUU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr11_+_35684288_35684353	0.023461	UCACAUU	ENST00000299413.5|TRIM44|ENSG00000166326.5|tripartite motif containing 44
hg19_v2_chr9_-_127905736_127905815	0.0232736	UCACAUU	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr5_+_52083730_52083821	0.0232508	UCACAUU	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr2_-_228028829_228028858	0.0229187	UCACAUU	ENST00000396625.3|COL4A4|ENSG00000081052.10|collagen, type IV, alpha 4 	ENST00000329662.7|COL4A4|ENSG00000081052.10|collagen, type IV, alpha 4
hg19_v2_chr20_+_30102231_30102324	0.0226788	UCACAUU	ENST00000335574.5|HM13|ENSG00000101294.12|histocompatibility (minor) 13 	ENST00000340852.5|HM13|ENSG00000101294.12|histocompatibility (minor) 13 	ENST00000398174.3|HM13|ENSG00000101294.12|histocompatibility (minor) 13 	ENST00000376127.3|HM13|ENSG00000101294.12|histocompatibility (minor) 13 	ENST00000344042.5|HM13|ENSG00000101294.12|histocompatibility (minor) 13
hg19_v2_chr1_+_112162381_112162431	0.0226564	UCACAUU	ENST00000433097.1|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000369709.3|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000436150.2|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family
hg19_v2_chr7_+_90032667_90032793	0.0224532	UCACAUU	ENST00000496677.1|CLDN12|ENSG00000157224.11|claudin 12 	ENST00000287916.4|CLDN12|ENSG00000157224.11|claudin 12 	ENST00000535571.1|CLDN12|ENSG00000157224.11|claudin 12 	ENST00000394604.1|CLDN12|ENSG00000157224.11|claudin 12 	ENST00000394605.2|CLDN12|ENSG00000157224.11|claudin 12
hg19_v2_chr7_+_89975979_89976052	0.0224485	UCACAUU	ENST00000257659.8|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000222511.6|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000417207.1|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative)
hg19_v2_chr20_-_10654639_10654694	0.0223762	UCACAUU	ENST00000254958.5|JAG1|ENSG00000101384.7|jagged 1
hg19_v2_chr2_+_5832799_5832799	0.0223693	UCACAUU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chrX_-_135056216_135056227	0.0222609	UCACAUU	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr5_-_76383133_76383186	0.0221101	UCACAUU	ENST00000255198.2|ZBED3|ENSG00000132846.5|zinc finger, BED-type containing 3
hg19_v2_chr16_+_58497567_58497586	0.0219149	UCACAUU	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr15_+_63481668_63481812	0.0217038	UCACAUU	ENST00000321437.4|RAB8B|ENSG00000166128.8|RAB8B, member RAS oncogene family 	ENST00000559006.1|RAB8B|ENSG00000166128.8|RAB8B, member RAS oncogene family 	ENST00000448330.2|RAB8B|ENSG00000166128.8|RAB8B, member RAS oncogene family
hg19_v2_chr17_+_57784826_57784883	0.0215552	UCACAUU	ENST00000262291.4|VMP1|ENSG00000062716.6|vacuole membrane protein 1
hg19_v2_chr1_-_31196427_31196434	0.0214519	UCACAUU	ENST00000373765.4|MATN1|ENSG00000162510.5|matrilin 1, cartilage matrix protein
hg19_v2_chr2_+_178977143_178977211	0.0210488	UCACAUU	ENST00000286070.5|RBM45|ENSG00000155636.10|RNA binding motif protein 45
hg19_v2_chr9_+_100395891_100395922	0.0207447	UCACAUU	ENST00000375147.3|NCBP1|ENSG00000136937.8|nuclear cap binding protein subunit 1, 80kDa
hg19_v2_chr17_+_75136980_75137028	0.0205605	UCACAUU	ENST00000585618.1|SEC14L1|ENSG00000129657.10|SEC14-like 1 (S. cerevisiae) 	ENST00000413679.2|SEC14L1|ENSG00000129657.10|SEC14-like 1 (S. cerevisiae)
hg19_v2_chr9_+_129567282_129567353	0.0205586	UCACAUU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr3_+_67048721_67048760	0.020486	UCACAUU	ENST00000295568.4|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000484414.1|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000460576.1|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000417314.2|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8
hg19_v2_chr13_+_20532807_20532841	0.0204773	UCACAUU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr11_+_34073195_34073266	0.0203492	UCACAUU	ENST00000341394.4|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr17_+_43224684_43224684	0.0202862	UCACAUU	ENST00000332499.2|HEXIM1|ENSG00000186834.2|hexamethylene bis-acetamide inducible 1
hg19_v2_chr12_+_862089_862343	0.0202731	UCACAUU	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chr5_+_179159813_179159851	0.0202627	UCACAUU	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chrX_-_24045303_24045303	0.0201098	UCACAUU	ENST00000328046.8|KLHL15|ENSG00000174010.9|kelch-like family member 15
hg19_v2_chr5_-_40755987_40756077	0.0199625	UCACAUU	ENST00000337702.4|TTC33|ENSG00000113638.8|tetratricopeptide repeat domain 33
hg19_v2_chr11_+_82868030_82868179	0.0197954	UCACAUU	ENST00000298281.4|PCF11|ENSG00000165494.6|PCF11 cleavage and polyadenylation factor subunit 	ENST00000530660.1|PCF11|ENSG00000165494.6|PCF11 cleavage and polyadenylation factor subunit
hg19_v2_chr3_-_133380731_133380834	0.019754	UCACAUU	ENST00000260810.5|TOPBP1|ENSG00000163781.8|topoisomerase (DNA) II binding protein 1
hg19_v2_chr1_-_93645818_93645918	0.0197417	UCACAUU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr10_-_119806085_119806114	0.0197072	UCACAUU	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr20_+_60718785_60718853	0.0196841	UCACAUU	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr2_-_190649082_190649102	0.0193717	UCACAUU	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr9_+_108424738_108424738	0.0192854	UCACAUU	ENST00000334077.3|TAL2|ENSG00000186051.4|T-cell acute lymphocytic leukemia 2
hg19_v2_chr7_-_73097741_73097789	0.0189698	UCACAUU	ENST00000395176.2|DNAJC30|ENSG00000176410.7|DnaJ (Hsp40) homolog, subfamily C, member 30
hg19_v2_chr20_+_13202418_13202418	0.0188901	UCACAUU	ENST00000262487.4|ISM1|ENSG00000101230.5|isthmin 1, angiogenesis inhibitor
hg19_v2_chr17_-_66287257_66287276	0.0187237	UCACAUU	ENST00000327268.4|SLC16A6|ENSG00000108932.7|solute carrier family 16, member 6
hg19_v2_chr2_-_54087066_54087297	0.0187208	UCACAUU	ENST00000394705.2|GPR75|ENSG00000119737.5|G protein-coupled receptor 75 	ENST00000352846.3|GPR75-ASB3|ENSG00000115239.17|GPR75-ASB3 readthrough 	ENST00000406625.2|ASB3|ENSG00000270898.1|Ankyrin repeat and SOCS box protein 3
hg19_v2_chr17_-_62658186_62658231	0.0186699	UCACAUU	ENST00000262435.9|SMURF2|ENSG00000108854.11|SMAD specific E3 ubiquitin protein ligase 2
hg19_v2_chr7_+_38217818_38217882	0.018487	UCACAUU	ENST00000009041.7|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000544203.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000434197.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like
hg19_v2_chr14_-_61190754_61190852	0.0182749	UCACAUU	ENST00000216513.4|SIX4|ENSG00000100625.8|SIX homeobox 4
hg19_v2_chr2_+_85766280_85766299	0.0182001	UCACAUU	ENST00000306434.3|MAT2A|ENSG00000168906.8|methionine adenosyltransferase II, alpha
hg19_v2_chr3_-_88108192_88108203	0.0181862	UCACAUU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr12_+_104324112_104324196	0.0180975	UCACAUU	ENST00000299767.5|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr8_-_72268889_72268955	0.0180465	UCACAUU	ENST00000388742.4|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr1_-_212004090_212004168	0.0180375	UCACAUU	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr18_+_905104_905118	0.0179026	UCACAUU	ENST00000579794.1|ADCYAP1|ENSG00000141433.8|adenylate cyclase activating polypeptide 1 (pituitary)
hg19_v2_chr3_-_47205457_47205492	0.017798	UCACAUU	ENST00000409792.3|SETD2|ENSG00000181555.15|SET domain containing 2
hg19_v2_chr12_+_31812602_31812645	0.0177216	UCACAUU	ENST00000538463.1|METTL20|ENSG00000139160.9|methyltransferase like 20 	ENST00000357721.3|METTL20|ENSG00000139160.9|methyltransferase like 20 	ENST00000539633.1|METTL20|ENSG00000139160.9|methyltransferase like 20
hg19_v2_chr2_+_112812778_112812800	0.0176604	UCACAUU	ENST00000283206.4|TMEM87B|ENSG00000153214.5|transmembrane protein 87B
hg19_v2_chr8_+_37594130_37594169	0.0176173	UCACAUU	ENST00000518526.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000523887.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000276461.5|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2
hg19_v2_chr5_-_114961858_114961876	0.0175585	UCACAUU	ENST00000282382.4|TMED7-TICAM2|ENSG00000251201.4|TMED7-TICAM2 readthrough 	ENST00000456936.3|TMED7|ENSG00000134970.13|transmembrane emp24 protein transport domain containing 7 	ENST00000408996.4|TICAM2|ENSG00000243414.4|toll-like receptor adaptor molecule 2
hg19_v2_chr6_+_117002339_117002400	0.0174226	UCACAUU	ENST00000413340.1|KPNA5|ENSG00000196911.5|karyopherin alpha 5 (importin alpha 6) 	ENST00000368564.1|KPNA5|ENSG00000196911.5|karyopherin alpha 5 (importin alpha 6) 	ENST00000356348.1|KPNA5|ENSG00000196911.5|karyopherin alpha 5 (importin alpha 6)
hg19_v2_chr9_+_129622904_129622956	0.017394	UCACAUU	ENST00000319119.4|ZBTB34|ENSG00000177125.5|zinc finger and BTB domain containing 34
hg19_v2_chr4_-_13546632_13546674	0.0172228	UCACAUU	ENST00000382438.5|NKX3-2|ENSG00000109705.7|NK3 homeobox 2
hg19_v2_chr18_+_59854480_59854551	0.0171146	UCACAUU	ENST00000256858.6|KIAA1468|ENSG00000134444.9|KIAA1468 	ENST00000398130.2|KIAA1468|ENSG00000134444.9|KIAA1468
hg19_v2_chr11_-_76091986_76092038	0.0167951	UCACAUU	ENST00000260045.3|PRKRIR|ENSG00000137492.3|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
hg19_v2_chr10_-_32636106_32636150	0.0165916	UCACAUU	ENST00000263062.8|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila) 	ENST00000319778.6|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr20_-_43150601_43150751	0.0164864	UCACAUU	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr17_+_61699766_61699826	0.0163114	UCACAUU	ENST00000579585.1|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3 	ENST00000584573.1|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3 	ENST00000361733.3|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3 	ENST00000361357.3|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3
hg19_v2_chr17_-_3749515_3749551	0.0162757	UCACAUU	ENST00000158149.3|C17orf85|ENSG00000074356.12|chromosome 17 open reading frame 85 	ENST00000389005.4|C17orf85|ENSG00000074356.12|chromosome 17 open reading frame 85
hg19_v2_chr5_-_133747589_133747603	0.0162263	UCACAUU	ENST00000458198.2|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr11_-_9286921_9286937	0.0161776	UCACAUU	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr17_-_38020392_38020477	0.0161365	UCACAUU	ENST00000346872.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439167.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377945.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000394189.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377944.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377958.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000535189.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377952.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr4_-_111119804_111119832	0.0160528	UCACAUU	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr3_-_15374033_15374136	0.0160287	UCACAUU	ENST00000253688.5|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated) 	ENST00000383791.3|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated)
hg19_v2_chr13_+_113951532_113951594	0.0160104	UCACAUU	ENST00000332556.4|LAMP1|ENSG00000185896.9|lysosomal-associated membrane protein 1
hg19_v2_chr12_-_56652111_56652183	0.0158987	UCACAUU	ENST00000267116.7|ANKRD52|ENSG00000139645.9|ankyrin repeat domain 52
hg19_v2_chr8_+_134203273_134203289	0.0156015	UCACAUU	ENST00000250160.6|WISP1|ENSG00000104415.9|WNT1 inducible signaling pathway protein 1
hg19_v2_chr17_-_58603568_58603610	0.0155336	UCACAUU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr10_-_95462265_95462378	0.0153125	UCACAUU	ENST00000536233.1|FRA10AC1|ENSG00000148690.10|fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 	ENST00000359204.4|FRA10AC1|ENSG00000148690.10|fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 	ENST00000371430.2|FRA10AC1|ENSG00000148690.10|fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 	ENST00000394100.2|FRA10AC1|ENSG00000148690.10|fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1
hg19_v2_chr5_+_139493665_139493718	0.0152886	UCACAUU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr2_+_45878790_45878913	0.0152525	UCACAUU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr4_-_21699380_21699397	0.0151845	UCACAUU	ENST00000382148.3|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chrX_-_64196307_64196338	0.0150715	UCACAUU	ENST00000545618.1|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr4_-_76598296_76598318	0.0149817	UCACAUU	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr12_+_68042495_68042508	0.0149677	UCACAUU	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr9_-_37576226_37576250	0.0149496	UCACAUU	ENST00000432825.2|FBXO10|ENSG00000147912.8|F-box protein 10
hg19_v2_chr5_+_55033845_55033870	0.014932	UCACAUU	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr11_+_86748863_86748948	0.0148751	UCACAUU	ENST00000340353.7|TMEM135|ENSG00000166575.12|transmembrane protein 135
hg19_v2_chr16_-_3930724_3930735	0.0148077	UCACAUU	ENST00000262367.5|CREBBP|ENSG00000005339.8|CREB binding protein
hg19_v2_chr2_+_120517174_120517207	0.0146208	UCACAUU	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr10_+_88516396_88516426	0.0145878	UCACAUU	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr1_-_202936394_202936408	0.0141381	UCACAUU	ENST00000367249.4|CYB5R1|ENSG00000159348.8|cytochrome b5 reductase 1
hg19_v2_chr2_-_37193606_37193633	0.0140428	UCACAUU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr2_-_153574480_153574552	0.0140081	UCACAUU	ENST00000410080.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr10_-_30348439_30348531	0.0138389	UCACAUU	ENST00000375377.1|KIAA1462|ENSG00000165757.8|KIAA1462
hg19_v2_chr6_-_134639180_134639220	0.0135792	UCACAUU	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr17_-_4167142_4167281	0.0134999	UCACAUU	ENST00000570535.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000574367.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000341657.4|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000433651.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr16_-_18812746_18813000	0.0134921	UCACAUU	ENST00000546206.2|ARL6IP1|ENSG00000170540.10|ADP-ribosylation factor-like 6 interacting protein 1 	ENST00000567078.2|RP11-1035H13.3|ENSG00000260342.2|Uncharacterized protein  	ENST00000562819.1|ARL6IP1|ENSG00000170540.10|ADP-ribosylation factor-like 6 interacting protein 1 	ENST00000562234.2|ARL6IP1|ENSG00000170540.10|ADP-ribosylation factor-like 6 interacting protein 1 	ENST00000304414.7|ARL6IP1|ENSG00000170540.10|ADP-ribosylation factor-like 6 interacting protein 1
hg19_v2_chr4_+_166248775_166248901	0.0128583	UCACAUU	ENST00000261507.6|MSMO1|ENSG00000052802.8|methylsterol monooxygenase 1 	ENST00000507013.1|MSMO1|ENSG00000052802.8|methylsterol monooxygenase 1 	ENST00000393766.2|MSMO1|ENSG00000052802.8|methylsterol monooxygenase 1 	ENST00000504317.1|MSMO1|ENSG00000052802.8|methylsterol monooxygenase 1
hg19_v2_chr13_+_108921977_108922082	0.0127674	UCACAUU	ENST00000430559.1|TNFSF13B|ENSG00000102524.7|tumor necrosis factor (ligand) superfamily, member 13b 	ENST00000375887.4|TNFSF13B|ENSG00000102524.7|tumor necrosis factor (ligand) superfamily, member 13b
hg19_v2_chr21_-_15755446_15755508	0.0127208	UCACAUU	ENST00000544452.1|HSPA13|ENSG00000155304.4|heat shock protein 70kDa family, member 13 	ENST00000285667.3|HSPA13|ENSG00000155304.4|heat shock protein 70kDa family, member 13
hg19_v2_chr2_-_102003987_102004057	0.0126872	UCACAUU	ENST00000324768.5|CREG2|ENSG00000175874.5|cellular repressor of E1A-stimulated genes 2
hg19_v2_chr17_-_62502639_62502849	0.0126293	UCACAUU	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chrX_+_27826107_27826107	0.0125909	UCACAUU	ENST00000356790.2|MAGEB10|ENSG00000177689.9|melanoma antigen family B, 10
hg19_v2_chr6_+_10556215_10556240	0.0125852	UCACAUU	ENST00000316170.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr10_+_102295616_102295713	0.0125831	UCACAUU	ENST00000299163.6|HIF1AN|ENSG00000166135.9|hypoxia inducible factor 1, alpha subunit inhibitor
hg19_v2_chr13_+_27131887_27131899	0.012571	UCACAUU	ENST00000335327.5|WASF3|ENSG00000132970.8|WAS protein family, member 3
hg19_v2_chr1_+_93913713_93913839	0.012384	UCACAUU	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr19_-_12886327_12886434	0.0123839	UCACAUU	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr12_-_93323013_93323112	0.012382	UCACAUU	ENST00000322349.8|EEA1|ENSG00000102189.12|early endosome antigen 1
hg19_v2_chr6_-_8064567_8064652	0.0121512	UCACAUU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr3_-_72496035_72496069	0.0120156	UCACAUU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr11_+_124609823_124609941	0.0119255	UCACAUU	ENST00000412681.2|NRGN|ENSG00000154146.8|neurogranin (protein kinase C substrate, RC3)
hg19_v2_chr6_+_153019023_153019043	0.0117918	UCACAUU	ENST00000367245.5|MYCT1|ENSG00000120279.6|myc target 1 	ENST00000529453.1|MYCT1|ENSG00000120279.6|myc target 1
hg19_v2_chr5_-_11904152_11904166	0.0116647	UCACAUU	ENST00000304623.8|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2 	ENST00000458100.2|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2
hg19_v2_chr10_+_93558069_93558154	0.0115855	UCACAUU	ENST00000371627.4|TNKS2|ENSG00000107854.5|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
hg19_v2_chr1_-_205719295_205719404	0.0115779	UCACAUU	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr6_+_76458909_76458934	0.0115678	UCACAUU	ENST00000369981.3|MYO6|ENSG00000196586.9|myosin VI 	ENST00000369985.4|MYO6|ENSG00000196586.9|myosin VI
hg19_v2_chr4_+_41992489_41992561	0.0115413	UCACAUU	ENST00000264451.7|SLC30A9|ENSG00000014824.9|solute carrier family 30 (zinc transporter), member 9
hg19_v2_chr1_-_86174065_86174134	0.0114379	UCACAUU	ENST00000370574.3|ZNHIT6|ENSG00000117174.6|zinc finger, HIT-type containing 6 	ENST00000431532.2|ZNHIT6|ENSG00000117174.6|zinc finger, HIT-type containing 6
hg19_v2_chr14_-_39639523_39639617	0.0113347	UCACAUU	ENST00000330149.5|TRAPPC6B|ENSG00000182400.10|trafficking protein particle complex 6B 	ENST00000554018.1|TRAPPC6B|ENSG00000182400.10|trafficking protein particle complex 6B 	ENST00000347691.5|TRAPPC6B|ENSG00000182400.10|trafficking protein particle complex 6B
hg19_v2_chr1_-_240775447_240775462	0.0111923	UCACAUU	ENST00000318160.4|GREM2|ENSG00000180875.4|gremlin 2, DAN family BMP antagonist
hg19_v2_chr4_+_170541660_170541677	0.0109269	UCACAUU	ENST00000513761.1|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3 	ENST00000347613.4|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3
hg19_v2_chr7_-_28220354_28220441	0.0109175	UCACAUU	ENST00000283928.5|JAZF1|ENSG00000153814.7|JAZF zinc finger 1
hg19_v2_chr10_-_28034989_28035130	0.0108558	UCACAUU	ENST00000375790.5|MKX|ENSG00000150051.9|mohawk homeobox
hg19_v2_chr2_-_201936302_201936416	0.01084	UCACAUU	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr10_+_104678032_104678094	0.0107663	UCACAUU	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr5_+_10353780_10353890	0.010758	UCACAUU	ENST00000449913.2|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000503788.1|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000274140.5|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase
hg19_v2_chr12_+_94542459_94542513	0.0107399	UCACAUU	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr17_-_18585541_18585572	0.0107339	UCACAUU	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr12_-_76953284_76953341	0.010647	UCACAUU	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr7_+_138916231_138916231	0.010439	UCACAUU	ENST00000473989.3|UBN2|ENSG00000157741.10|ubinuclein 2 	ENST00000288561.8|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr1_-_150669500_150669602	0.0104218	UCACAUU	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chrX_-_110513703_110513751	0.0104166	UCACAUU	ENST00000324068.1|CAPN6|ENSG00000077274.7|calpain 6
hg19_v2_chr1_-_108742957_108743003	0.0102741	UCACAUU	ENST00000565488.1|SLC25A24|ENSG00000085491.11|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
hg19_v2_chr17_+_34900737_34900821	0.0102692	UCACAUU	ENST00000304718.4|GGNBP2|ENSG00000005955.8|gametogenetin binding protein 2 	ENST00000485685.2|GGNBP2|ENSG00000005955.8|gametogenetin binding protein 2
hg19_v2_chr10_+_72238517_72238595	0.0101958	UCACAUU	ENST00000263563.6|PALD1|ENSG00000107719.8|phosphatase domain containing, paladin 1
hg19_v2_chr10_+_99079008_99079060	0.0101954	UCACAUU	ENST00000371021.3|FRAT1|ENSG00000165879.7|frequently rearranged in advanced T-cell lymphomas
hg19_v2_chrX_-_41782249_41782287	0.0100672	UCACAUU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr17_-_27621125_27621143	0.0100661	UCACAUU	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr8_+_64081118_64081131	0.010029	UCACAUU	ENST00000539294.1|YTHDF3|ENSG00000185728.12|YTH domain family, member 3
hg19_v2_chr1_+_28099683_28099694	0.0099413	UCACAUU	ENST00000373943.4|STX12|ENSG00000117758.9|syntaxin 12
hg19_v2_chr6_-_154677900_154677944	0.0099073	UCACAUU	ENST00000265198.4|IPCEF1|ENSG00000074706.9|interaction protein for cytohesin exchange factors 1 	ENST00000520261.1|IPCEF1|ENSG00000074706.9|interaction protein for cytohesin exchange factors 1
hg19_v2_chr18_-_31803435_31803515	0.00984642	UCACAUU	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chrX_-_103401649_103401708	0.00978246	UCACAUU	ENST00000357421.4|SLC25A53|ENSG00000176274.6|solute carrier family 25, member 53
hg19_v2_chr4_+_39046615_39046680	0.00966403	UCACAUU	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr12_+_62860581_62860629	0.00929569	UCACAUU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr10_-_101491828_101491900	0.00929149	UCACAUU	ENST00000370483.5|COX15|ENSG00000014919.8|cytochrome c oxidase assembly homolog 15 (yeast) 	ENST00000016171.5|COX15|ENSG00000014919.8|cytochrome c oxidase assembly homolog 15 (yeast)
hg19_v2_chr6_-_34360413_34360453	0.00923754	UCACAUU	ENST00000607016.1|NUDT3|ENSG00000272325.1|nudix (nucleoside diphosphate linked moiety X)-type motif 3
hg19_v2_chr22_-_18111499_18111584	0.00922152	UCACAUU	ENST00000413576.1|ATP6V1E1|ENSG00000131100.8|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 	ENST00000399796.2|ATP6V1E1|ENSG00000131100.8|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 	ENST00000399798.2|ATP6V1E1|ENSG00000131100.8|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 	ENST00000253413.5|ATP6V1E1|ENSG00000131100.8|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1
hg19_v2_chr12_-_88974236_88974256	0.0091793	UCACAUU	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr4_+_159690218_159690290	0.00908363	UCACAUU	ENST00000264433.6|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr4_-_74864386_74864496	0.00884031	UCACAUU	ENST00000296027.4|CXCL5|ENSG00000163735.6|chemokine (C-X-C motif) ligand 5
hg19_v2_chr4_-_53525406_53525502	0.0087677	UCACAUU	ENST00000451218.2|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46 	ENST00000441222.3|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr11_+_120195992_120196023	0.00851444	UCACAUU	ENST00000314475.2|TMEM136|ENSG00000181264.4|transmembrane protein 136 	ENST00000529187.1|TMEM136|ENSG00000181264.4|transmembrane protein 136
hg19_v2_chr7_-_558876_559046	0.00850091	UCACAUU	ENST00000354513.5|PDGFA|ENSG00000197461.9|platelet-derived growth factor alpha polypeptide 	ENST00000402802.3|PDGFA|ENSG00000197461.9|platelet-derived growth factor alpha polypeptide
hg19_v2_chr7_+_114562172_114562243	0.00844356	UCACAUU	ENST00000393486.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing 	ENST00000257724.3|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing
hg19_v2_chr21_+_35445827_35445886	0.00842366	UCACAUU	ENST00000608209.1|SLC5A3|ENSG00000272962.1|sodium/myo-inositol cotransporter  	ENST00000381151.3|SLC5A3|ENSG00000198743.5|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3
hg19_v2_chr4_+_186064395_186064426	0.00834265	UCACAUU	ENST00000281456.6|SLC25A4|ENSG00000151729.6|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4
hg19_v2_chr5_-_145214848_145214886	0.00813286	UCACAUU	ENST00000505416.1|PRELID2|ENSG00000186314.7|PRELI domain containing 2 	ENST00000334744.4|PRELID2|ENSG00000186314.7|PRELI domain containing 2 	ENST00000358004.2|PRELID2|ENSG00000186314.7|PRELI domain containing 2 	ENST00000511435.1|PRELID2|ENSG00000186314.7|PRELI domain containing 2
hg19_v2_chr14_-_57735528_57735726	0.00803542	UCACAUU	ENST00000340918.7|EXOC5|ENSG00000070367.11|exocyst complex component 5 	ENST00000413566.2|EXOC5|ENSG00000070367.11|exocyst complex component 5
hg19_v2_chr11_-_86666427_86666450	0.007793	UCACAUU	ENST00000531380.1|FZD4|ENSG00000174804.3|frizzled family receptor 4
hg19_v2_chr14_+_50234309_50234330	0.0077364	UCACAUU	ENST00000298307.5|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr4_-_25162188_25162208	0.00741969	UCACAUU	ENST00000302922.3|SEPSECS|ENSG00000109618.7|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
hg19_v2_chr20_+_47662805_47662907	0.00703399	UCACAUU	ENST00000262982.2|CSE1L|ENSG00000124207.12|CSE1 chromosome segregation 1-like (yeast) 	ENST00000542325.1|CSE1L|ENSG00000124207.12|CSE1 chromosome segregation 1-like (yeast)
hg19_v2_chr5_+_145583156_145583180	0.00701024	UCACAUU	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr2_-_209119831_209119857	0.00700458	UCACAUU	ENST00000345146.2|IDH1|ENSG00000138413.9|isocitrate dehydrogenase 1 (NADP+), soluble
hg19_v2_chr3_+_5163905_5164039	0.00691718	UCACAUU	ENST00000256496.3|ARL8B|ENSG00000134108.8|ADP-ribosylation factor-like 8B 	ENST00000419534.2|ARL8B|ENSG00000134108.8|ADP-ribosylation factor-like 8B
hg19_v2_chr9_+_114423615_114423661	0.00683266	UCACAUU	ENST00000374293.4|GNG10|ENSG00000242616.3|guanine nucleotide binding protein (G protein), gamma 10
hg19_v2_chr12_-_100536608_100536667	0.00666128	UCACAUU	ENST00000356828.3|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like 	ENST00000279907.7|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like
hg19_v2_chrX_-_132095419_132095426	0.00657537	UCACAUU	ENST00000370836.2|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2 	ENST00000521489.1|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2
hg19_v2_chr11_+_134146635_134146635	0.00646136	UCACAUU	ENST00000431683.2|GLB1L3|ENSG00000166105.11|galactosidase, beta 1-like 3
hg19_v2_chr22_+_29279552_29279586	0.0063396	UCACAUU	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr15_+_80696666_80696700	0.00633739	UCACAUU	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr16_-_58033762_58033762	0.00631987	UCACAUU	ENST00000299237.2|ZNF319|ENSG00000166188.2|zinc finger protein 319
hg19_v2_chr12_+_119419294_119419308	0.00615623	UCACAUU	ENST00000267260.4|SRRM4|ENSG00000139767.4|serine/arginine repetitive matrix 4
hg19_v2_chr5_+_76506706_76506787	0.00603311	UCACAUU	ENST00000340978.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000346042.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000264917.5|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000342343.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000333194.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B
hg19_v2_chr4_-_76439596_76439643	0.00536406	UCACAUU	ENST00000451788.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 	ENST00000512706.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr3_-_122233723_122233797	0.00532187	UCACAUU	ENST00000493510.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000344337.6|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000476916.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000465882.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5)
hg19_v2_chr7_-_26240357_26240377	0.00530496	UCACAUU	ENST00000354667.4|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1 	ENST00000356674.7|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v2_chr14_+_39735411_39735502	0.00526826	UCACAUU	ENST00000603904.1|RP11-407N17.3|ENSG00000258941.2|cTAGE family member 5 isoform 4
hg19_v2_chr4_+_79697495_79697538	0.00525571	UCACAUU	ENST00000502871.1|BMP2K|ENSG00000138756.13|BMP2 inducible kinase 	ENST00000335016.5|BMP2K|ENSG00000138756.13|BMP2 inducible kinase
hg19_v2_chr8_+_59465728_59465826	0.0051795	UCACAUU	ENST00000260130.4|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000422546.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000447182.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000413219.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000424270.2|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000523483.1|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin) 	ENST00000520168.1|SDCBP|ENSG00000137575.7|syndecan binding protein (syntenin)
hg19_v2_chr3_+_140770183_140770244	0.0051559	UCACAUU	ENST00000310546.2|SPSB4|ENSG00000175093.4|splA/ryanodine receptor domain and SOCS box containing 4
hg19_v2_chr15_-_64648273_64648442	0.00495343	UCACAUU	ENST00000607537.1|CSNK1G1|ENSG00000169118.11|casein kinase 1, gamma 1 	ENST00000303052.7|CSNK1G1|ENSG00000169118.11|casein kinase 1, gamma 1 	ENST00000303032.6|CSNK1G1|ENSG00000169118.11|casein kinase 1, gamma 1
hg19_v2_chr7_-_95225768_95225967	0.00494854	UCACAUU	ENST00000005178.5|PDK4|ENSG00000004799.7|pyruvate dehydrogenase kinase, isozyme 4
hg19_v2_chr19_+_1249869_1249894	0.0047021	UCACAUU	ENST00000591446.2|MIDN|ENSG00000167470.8|midnolin
hg19_v2_chr16_-_75467318_75467408	0.00449874	UCACAUU	ENST00000283882.3|CFDP1|ENSG00000153774.4|craniofacial development protein 1
hg19_v2_chr8_+_99129513_99129570	0.00437799	UCACAUU	ENST00000522319.1|POP1|ENSG00000104356.6|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) 	ENST00000401707.2|POP1|ENSG00000104356.6|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)
hg19_v2_chr10_-_125851961_125851970	0.00434524	UCACAUU	ENST00000346248.5|CHST15|ENSG00000182022.13|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
hg19_v2_chr5_+_56469775_56469837	0.00421811	UCACAUU	ENST00000424459.3|GPBP1|ENSG00000062194.11|GC-rich promoter binding protein 1
hg19_v2_chr1_+_50574585_50574638	0.00411636	UCACAUU	ENST00000371824.1|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4 	ENST00000371823.4|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr20_+_62371206_62371224	0.00400799	UCACAUU	ENST00000266077.2|SLC2A4RG|ENSG00000125520.9|SLC2A4 regulator
hg19_v2_chr20_-_17949363_17949454	0.00354415	UCACAUU	ENST00000377759.4|SNX5|ENSG00000089006.12|sorting nexin 5 	ENST00000606557.1|SNX5|ENSG00000089006.12|sorting nexin 5 	ENST00000606602.1|SNX5|ENSG00000089006.12|sorting nexin 5 	ENST00000486039.1|SNX5|ENSG00000089006.12|sorting nexin 5 	ENST00000481323.1|SNX5|ENSG00000089006.12|sorting nexin 5
hg19_v2_chr4_-_24586140_24586188	0.00348496	UCACAUU	ENST00000336812.4|DHX15|ENSG00000109606.8|DEAH (Asp-Glu-Ala-His) box helicase 15
hg19_v2_chr1_-_193155729_193155784	0.00347903	UCACAUU	ENST00000367434.4|B3GALT2|ENSG00000162630.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
hg19_v2_chr15_+_67358163_67358192	0.00337754	UCACAUU	ENST00000327367.4|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr17_-_41977964_41978013	0.00337663	UCACAUU	ENST00000377184.3|MPP2|ENSG00000108852.10|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
hg19_v2_chr12_-_51477333_51477426	0.0033715	UCACAUU	ENST00000228515.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548206.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000546935.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548981.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2
hg19_v2_chr2_-_175113301_175113426	0.00335368	UCACAUU	ENST00000344357.5|OLA1|ENSG00000138430.11|Obg-like ATPase 1 	ENST00000284719.3|OLA1|ENSG00000138430.11|Obg-like ATPase 1
hg19_v2_chr12_-_9102549_9102591	0.00334754	UCACAUU	ENST00000000412.3|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr1_-_245027833_245027855	0.00328804	UCACAUU	ENST00000444376.2|HNRNPU|ENSG00000153187.12|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
hg19_v2_chr3_-_98620500_98620547	0.00315192	UCACAUU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr5_-_132948216_132948255	0.0031156	UCACAUU	ENST00000265342.7|FSTL4|ENSG00000053108.12|follistatin-like 4
hg19_v2_chr3_-_182698381_182698431	0.0030599	UCACAUU	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr7_+_94139105_94139197	0.00292165	UCACAUU	ENST00000297273.4|CASD1|ENSG00000127995.12|CAS1 domain containing 1
hg19_v2_chr1_+_61547894_61547980	0.0028978	UCACAUU	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr1_+_33283043_33283198	0.00287647	UCACAUU	ENST00000373476.1|S100PBP|ENSG00000116497.13|S100P binding protein 	ENST00000373475.5|S100PBP|ENSG00000116497.13|S100P binding protein 	ENST00000529027.1|S100PBP|ENSG00000116497.13|S100P binding protein 	ENST00000398243.3|S100PBP|ENSG00000116497.13|S100P binding protein
hg19_v2_chr2_+_42396472_42396563	0.00284629	UCACAUU	ENST00000318522.5|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4 	ENST00000402711.2|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4
hg19_v2_chr22_+_45559722_45559881	0.00280936	UCACAUU	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr3_-_157221357_157221365	0.00277906	UCACAUU	ENST00000494677.1|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr1_-_166845515_166845564	0.0027679	UCACAUU	ENST00000367874.4|TADA1|ENSG00000152382.5|transcriptional adaptor 1
hg19_v2_chr14_-_38064198_38064239	0.00260812	UCACAUU	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr4_+_128886532_128886576	0.00256031	UCACAUU	ENST00000444616.1|C4orf29|ENSG00000164074.10|chromosome 4 open reading frame 29 	ENST00000388795.5|C4orf29|ENSG00000164074.10|chromosome 4 open reading frame 29
hg19_v2_chr3_-_47823298_47823423	0.00241434	UCACAUU	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr10_-_50396407_50396424	0.00235455	UCACAUU	ENST00000374153.2|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128 	ENST00000374151.3|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128
hg19_v2_chrX_-_53449593_53449677	0.00224013	UCACAUU	ENST00000375340.6|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A 	ENST00000322213.4|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A
hg19_v2_chr9_+_117373486_117373645	0.00192064	UCACAUU	ENST00000288502.4|C9orf91|ENSG00000157693.10|chromosome 9 open reading frame 91 	ENST00000374049.4|C9orf91|ENSG00000157693.10|chromosome 9 open reading frame 91
hg19_v2_chr5_+_50678921_50678921	0.00177992	UCACAUU	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr11_+_111473108_111473226	0.00170477	UCACAUU	ENST00000304987.3|SIK2|ENSG00000170145.4|salt-inducible kinase 2
hg19_v2_chr3_-_98312548_98312567	0.00168101	UCACAUU	ENST00000264193.2|CPOX|ENSG00000080819.2|coproporphyrinogen oxidase
hg19_v2_chr18_+_9913977_9914088	0.00162167	UCACAUU	ENST00000400000.2|VAPA|ENSG00000101558.9|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 	ENST00000340541.4|VAPA|ENSG00000101558.9|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
hg19_v2_chr1_+_46972668_46972669	0.00162064	UCACAUU	ENST00000371956.4|DMBX1|ENSG00000197587.6|diencephalon/mesencephalon homeobox 1 	ENST00000360032.3|DMBX1|ENSG00000197587.6|diencephalon/mesencephalon homeobox 1
hg19_v2_chr11_+_94277017_94277097	0.00127174	UCACAUU	ENST00000358752.2|FUT4|ENSG00000196371.2|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)
hg19_v2_chr13_-_52027134_52027343	0.00118676	UCACAUU	ENST00000311234.4|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000425000.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000463928.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000442263.3|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000398119.2|INTS6|ENSG00000102786.10|integrator complex subunit 6
hg19_v2_chr17_+_39845134_39845145	0.00116301	UCACAUU	ENST00000591776.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1 	ENST00000469257.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1
hg19_v2_chr10_-_94003003_94003013	0.00110762	UCACAUU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chr5_+_129240151_129240182	0.000981254	UCACAUU	ENST00000305031.4|CHSY3|ENSG00000198108.3|chondroitin sulfate synthase 3
hg19_v2_chr4_+_151503077_151503132	0.000777059	UCACAUU	ENST00000317605.4|MAB21L2|ENSG00000181541.4|mab-21-like 2 (C. elegans)
hg19_v2_chr22_+_39853258_39853349	0.000695576	UCACAUU	ENST00000341184.6|MGAT3|ENSG00000128268.11|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr3_+_140660634_140660729	0.000673897	UCACAUU	ENST00000446041.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000507429.1|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000324194.6|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr13_-_50367057_50367142	0.000647997	UCACAUU	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chr2_+_207139367_207139452	0.00063596	UCACAUU	ENST00000374423.3|ZDBF2|ENSG00000204186.3|zinc finger, DBF-type containing 2
hg19_v2_chr19_-_56092187_56092248	0.000601539	UCACAUU	ENST00000325421.4|ZNF579|ENSG00000218891.2|zinc finger protein 579 	ENST00000592239.1|ZNF579|ENSG00000218891.2|zinc finger protein 579
hg19_v2_chr9_+_36572851_36572932	0.000566161	UCACAUU	ENST00000298048.2|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000538311.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000536987.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000545008.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000536860.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000536329.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000541717.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase 	ENST00000543751.1|MELK|ENSG00000165304.3|maternal embryonic leucine zipper kinase
hg19_v2_chr21_-_36260980_36261011	0.000375652	UCACAUU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chrX_+_28605516_28605608	0.000289969	UCACAUU	ENST00000378993.1|IL1RAPL1|ENSG00000169306.5|interleukin 1 receptor accessory protein-like 1
hg19_v2_chr1_-_63153944_63154110	0.00022029	UCACAUU	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr3_+_38206975_38207101	8.0937e-05	UCACAUU	ENST00000446845.1|OXSR1|ENSG00000172939.4|oxidative stress responsive 1 	ENST00000311806.3|OXSR1|ENSG00000172939.4|oxidative stress responsive 1
