hg19_v2_chr11_-_115375107_115375283	0.0820095	UUGUUCG	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr9_-_23821273_23821313	0.0799978	UUGUUCG	ENST00000380110.4|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr12_+_4382917_4382938	0.0729661	UUGUUCG	ENST00000261254.3|CCND2|ENSG00000118971.3|cyclin D2
hg19_v2_chr4_-_139163491_139163510	0.072082	UUGUUCG	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr8_+_120220561_120220650	0.0626884	UUGUUCG	ENST00000276681.6|MAL2|ENSG00000147676.9|mal, T-cell differentiation protein 2 (gene/pseudogene)
hg19_v2_chr18_+_19749386_19749404	0.0605705	UUGUUCG	ENST00000269216.3|GATA6|ENSG00000141448.4|GATA binding protein 6
hg19_v2_chr8_+_61591337_61591393	0.0484657	UUGUUCG	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr22_+_40390930_40390994	0.0452185	UUGUUCG	ENST00000333407.6|FAM83F|ENSG00000133477.12|family with sequence similarity 83, member F
hg19_v2_chr4_-_36246060_36246167	0.0394378	UUGUUCG	ENST00000303965.4|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr13_-_95364389_95364389	0.0376156	UUGUUCG	ENST00000376945.2|SOX21|ENSG00000125285.4|SRY (sex determining region Y)-box 21
hg19_v2_chr12_+_20522179_20522203	0.0368094	UUGUUCG	ENST00000359062.3|PDE3A|ENSG00000172572.6|phosphodiesterase 3A, cGMP-inhibited
hg19_v2_chr17_+_55162453_55162594	0.0365025	UUGUUCG	ENST00000575322.1|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000337714.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000314126.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1
hg19_v2_chr4_+_155665123_155665158	0.0345579	UUGUUCG	ENST00000336356.3|LRAT|ENSG00000121207.7|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)
hg19_v2_chr20_+_20348740_20348765	0.0310789	UUGUUCG	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chr1_+_233463507_233463520	0.0310412	UUGUUCG	ENST00000366623.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4  	ENST00000366624.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4
hg19_v2_chr17_+_30813576_30813637	0.030268	UUGUUCG	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr13_-_31736027_31736064	0.0276163	UUGUUCG	ENST00000380406.5|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1 	ENST00000320027.5|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1 	ENST00000380405.4|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr8_-_125384927_125384952	0.0249618	UUGUUCG	ENST00000297632.6|TMEM65|ENSG00000164983.6|transmembrane protein 65
hg19_v2_chrX_+_56259316_56259480	0.0246898	UUGUUCG	ENST00000468660.1|KLF8|ENSG00000102349.10|Kruppel-like factor 8
hg19_v2_chr9_-_100935043_100935166	0.0238151	UUGUUCG	ENST00000343933.5|CORO2A|ENSG00000106789.8|coronin, actin binding protein, 2A
hg19_v2_chr10_-_131762105_131762105	0.0235741	UUGUUCG	ENST00000368648.3|EBF3|ENSG00000108001.9|early B-cell factor 3 	ENST00000355311.5|EBF3|ENSG00000108001.9|early B-cell factor 3
hg19_v2_chr22_+_51112800_51112852	0.0225162	UUGUUCG	ENST00000414786.2|SHANK3|ENSG00000251322.3|SH3 and multiple ankyrin repeat domains 3
hg19_v2_chr6_+_149068464_149068559	0.0218772	UUGUUCG	ENST00000367463.4|UST|ENSG00000111962.7|uronyl-2-sulfotransferase
hg19_v2_chrX_+_69664706_69664819	0.0213769	UUGUUCG	ENST00000194900.4|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila) 	ENST00000374360.3|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila)
hg19_v2_chr11_+_68080077_68080127	0.0210405	UUGUUCG	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr13_+_73632897_73632930	0.0197151	UUGUUCG	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr4_-_40631859_40631889	0.019712	UUGUUCG	ENST00000295971.7|RBM47|ENSG00000163694.10|RNA binding motif protein 47 	ENST00000319592.4|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr4_+_113152881_113152912	0.0177225	UUGUUCG	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr5_+_56111361_56111403	0.0176652	UUGUUCG	ENST00000399503.3|MAP3K1|ENSG00000095015.5|mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase
hg19_v2_chr5_+_149109825_149109907	0.0175055	UUGUUCG	ENST00000360453.4|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000394320.3|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta 	ENST00000309241.5|PPARGC1B|ENSG00000155846.12|peroxisome proliferator-activated receptor gamma, coactivator 1 beta
hg19_v2_chr19_-_663277_663312	0.0170527	UUGUUCG	ENST00000292363.5|RNF126|ENSG00000070423.13|ring finger protein 126
hg19_v2_chr1_-_21377447_21377487	0.0168836	UUGUUCG	ENST00000374937.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000264211.8|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr15_-_72410109_72410161	0.0166398	UUGUUCG	ENST00000564571.1|MYO9A|ENSG00000066933.11|myosin IXA
hg19_v2_chr18_-_53255766_53255860	0.0165112	UUGUUCG	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr1_-_100231349_100231349	0.0164865	UUGUUCG	ENST00000287474.5|FRRS1|ENSG00000156869.8|ferric-chelate reductase 1 	ENST00000414213.1|FRRS1|ENSG00000156869.8|ferric-chelate reductase 1
hg19_v2_chr11_+_34127142_34127189	0.0164367	UUGUUCG	ENST00000257829.3|NAT10|ENSG00000135372.4|N-acetyltransferase 10 (GCN5-related) 	ENST00000531159.2|NAT10|ENSG00000135372.4|N-acetyltransferase 10 (GCN5-related)
hg19_v2_chr10_-_52383644_52383743	0.0163082	UUGUUCG	ENST00000361781.2|SGMS1|ENSG00000198964.9|sphingomyelin synthase 1
hg19_v2_chr5_-_76935513_76935513	0.0152332	UUGUUCG	ENST00000306422.3|OTP|ENSG00000171540.6|orthopedia homeobox
hg19_v2_chr1_-_10856694_10856715	0.01446	UUGUUCG	ENST00000377022.3|CASZ1|ENSG00000130940.10|castor zinc finger 1 	ENST00000344008.5|CASZ1|ENSG00000130940.10|castor zinc finger 1
hg19_v2_chr10_-_126849068_126849138	0.0143154	UUGUUCG	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr1_+_111682058_111682249	0.0142916	UUGUUCG	ENST00000545121.1|CEPT1|ENSG00000134255.9|choline/ethanolamine phosphotransferase 1
hg19_v2_chr3_-_135914615_135914701	0.0141469	UUGUUCG	ENST00000309993.2|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chrX_-_49056635_49056718	0.0140859	UUGUUCG	ENST00000472598.1|SYP|ENSG00000102003.6|synaptophysin 	ENST00000538567.1|SYP|ENSG00000102003.6|synaptophysin 	ENST00000479808.1|SYP|ENSG00000102003.6|synaptophysin 	ENST00000263233.4|SYP|ENSG00000102003.6|synaptophysin
hg19_v2_chr8_-_101965146_101965236	0.0140341	UUGUUCG	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr17_+_27369918_27370010	0.0134233	UUGUUCG	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr12_-_76425368_76425384	0.0125775	UUGUUCG	ENST00000602540.1|PHLDA1|ENSG00000139289.9|pleckstrin homology-like domain, family A, member 1
hg19_v2_chr2_-_131850951_131851065	0.0125197	UUGUUCG	ENST00000409185.1|FAM168B|ENSG00000152102.13|family with sequence similarity 168, member B 	ENST00000389915.3|FAM168B|ENSG00000152102.13|family with sequence similarity 168, member B
hg19_v2_chr19_+_34919257_34919332	0.0123114	UUGUUCG	ENST00000246548.4|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2 	ENST00000590048.2|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2
hg19_v2_chr9_+_77112244_77112281	0.0122293	UUGUUCG	ENST00000376896.3|RORB|ENSG00000198963.6|RAR-related orphan receptor B
hg19_v2_chr15_-_25684110_25684212	0.0120549	UUGUUCG	ENST00000232165.3|UBE3A|ENSG00000114062.13|ubiquitin protein ligase E3A
hg19_v2_chr2_-_172750733_172750762	0.0120463	UUGUUCG	ENST00000392592.4|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12 	ENST00000422440.2|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12
hg19_v2_chr4_-_120550146_120550201	0.0118179	UUGUUCG	ENST00000354960.3|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr7_+_157318477_157318477	0.0116162	UUGUUCG	ENST00000444154.1|AC006372.1|ENSG00000236669.1|AC006372.1
hg19_v2_chr11_-_86666427_86666450	0.011431	UUGUUCG	ENST00000531380.1|FZD4|ENSG00000174804.3|frizzled family receptor 4
hg19_v2_chr10_-_735553_735683	0.0112957	UUGUUCG	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr11_+_33563821_33563877	0.0111002	UUGUUCG	ENST00000321505.4|KIAA1549L|ENSG00000110427.10|KIAA1549-like 	ENST00000265654.5|KIAA1549L|ENSG00000110427.10|KIAA1549-like 	ENST00000389726.3|KIAA1549L|ENSG00000110427.10|KIAA1549-like
hg19_v2_chr22_-_42017021_42017100	0.010366	UUGUUCG	ENST00000263256.6|DESI1|ENSG00000100418.7|desumoylating isopeptidase 1
hg19_v2_chrX_+_24483338_24483573	0.00905004	UUGUUCG	ENST00000379162.4|PDK3|ENSG00000067992.8|pyruvate dehydrogenase kinase, isozyme 3 	ENST00000441463.2|PDK3|ENSG00000067992.8|pyruvate dehydrogenase kinase, isozyme 3
hg19_v2_chr12_+_56211703_56211858	0.00866263	UUGUUCG	ENST00000243045.5|ORMDL2|ENSG00000123353.5|ORM1-like 2 (S. cerevisiae) 	ENST00000552672.1|ORMDL2|ENSG00000123353.5|ORM1-like 2 (S. cerevisiae) 	ENST00000550836.1|ORMDL2|ENSG00000123353.5|ORM1-like 2 (S. cerevisiae)
hg19_v2_chr6_-_71666732_71666769	0.00853038	UUGUUCG	ENST00000230053.6|B3GAT2|ENSG00000112309.6|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
hg19_v2_chr19_-_14316980_14316999	0.00851256	UUGUUCG	ENST00000361434.3|LPHN1|ENSG00000072071.12|latrophilin 1 	ENST00000340736.6|LPHN1|ENSG00000072071.12|latrophilin 1
hg19_v2_chr2_+_118846008_118846100	0.00846474	UUGUUCG	ENST00000245787.4|INSIG2|ENSG00000125629.10|insulin induced gene 2
hg19_v2_chr19_-_6279932_6280000	0.00844323	UUGUUCG	ENST00000252674.7|MLLT1|ENSG00000130382.7|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
hg19_v2_chr7_-_128695147_128695203	0.00804064	UUGUUCG	ENST00000482320.1|TNPO3|ENSG00000064419.9|transportin 3 	ENST00000393245.1|TNPO3|ENSG00000064419.9|transportin 3 	ENST00000471234.1|TNPO3|ENSG00000064419.9|transportin 3
hg19_v2_chr2_+_133174147_133174235	0.00779985	UUGUUCG	ENST00000329321.3|GPR39|ENSG00000183840.5|G protein-coupled receptor 39
hg19_v2_chr15_+_39542867_39542967	0.00769484	UUGUUCG	ENST00000318578.3|C15orf54|ENSG00000175746.4|chromosome 15 open reading frame 54 	ENST00000561223.1|C15orf54|ENSG00000175746.4|chromosome 15 open reading frame 54
hg19_v2_chr2_+_223725652_223725705	0.00765932	UUGUUCG	ENST00000357430.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3 	ENST00000392066.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3
hg19_v2_chr16_+_86544113_86544145	0.00762612	UUGUUCG	ENST00000262426.4|FOXF1|ENSG00000103241.5|forkhead box F1
hg19_v2_chr15_+_36887069_36887101	0.00759645	UUGUUCG	ENST00000566807.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000567389.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000562877.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41
hg19_v2_chrX_-_100604184_100604184	0.00758693	UUGUUCG	ENST00000372902.3|TIMM8A|ENSG00000126953.5|translocase of inner mitochondrial membrane 8 homolog A (yeast)
hg19_v2_chr12_+_53774423_53774658	0.00733294	UUGUUCG	ENST00000426431.2|SP1|ENSG00000185591.5|Sp1 transcription factor
hg19_v2_chr19_+_19496624_19496660	0.00725238	UUGUUCG	ENST00000494516.2|GATAD2A|ENSG00000167491.13|GATA zinc finger domain containing 2A 	ENST00000360315.3|GATAD2A|ENSG00000167491.13|GATA zinc finger domain containing 2A 	ENST00000252577.5|GATAD2A|ENSG00000167491.13|GATA zinc finger domain containing 2A
hg19_v2_chr3_-_151176497_151176497	0.00692131	UUGUUCG	ENST00000282466.3|IGSF10|ENSG00000152580.8|immunoglobulin superfamily, member 10
hg19_v2_chr21_-_38362497_38362541	0.00689669	UUGUUCG	ENST00000427746.1|HLCS|ENSG00000159267.10|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 	ENST00000336648.4|HLCS|ENSG00000159267.10|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)
hg19_v2_chr11_+_44117741_44117798	0.00638985	UUGUUCG	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr1_-_182573514_182573543	0.00634989	UUGUUCG	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr4_-_83295103_83295157	0.00613031	UUGUUCG	ENST00000313899.7|HNRNPD|ENSG00000138668.14|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 	ENST00000352301.4|HNRNPD|ENSG00000138668.14|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 	ENST00000509107.1|HNRNPD|ENSG00000138668.14|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 	ENST00000353341.4|HNRNPD|ENSG00000138668.14|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 	ENST00000541060.1|HNRNPD|ENSG00000138668.14|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
hg19_v2_chr6_-_91006461_91006517	0.0061243	UUGUUCG	ENST00000257749.4|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000343122.3|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000406998.2|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000453877.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr11_+_101981169_101981210	0.00608758	UUGUUCG	ENST00000526343.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000282441.5|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000537274.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000345877.2|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr6_+_34433844_34433921	0.00594649	UUGUUCG	ENST00000244458.2|PACSIN1|ENSG00000124507.6|protein kinase C and casein kinase substrate in neurons 1 	ENST00000374043.2|PACSIN1|ENSG00000124507.6|protein kinase C and casein kinase substrate in neurons 1
hg19_v2_chr20_-_524455_524466	0.00532797	UUGUUCG	ENST00000349736.5|CSNK2A1|ENSG00000101266.12|casein kinase 2, alpha 1 polypeptide 	ENST00000217244.3|CSNK2A1|ENSG00000101266.12|casein kinase 2, alpha 1 polypeptide
hg19_v2_chr9_+_140513438_140513483	0.00529401	UUGUUCG	ENST00000462484.1|EHMT1|ENSG00000181090.13|euchromatic histone-lysine N-methyltransferase 1 	ENST00000334856.6|EHMT1|ENSG00000181090.13|euchromatic histone-lysine N-methyltransferase 1 	ENST00000460843.1|EHMT1|ENSG00000181090.13|euchromatic histone-lysine N-methyltransferase 1
hg19_v2_chr22_+_29168652_29168770	0.00492521	UUGUUCG	ENST00000249064.4|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117 	ENST00000444523.1|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117 	ENST00000448492.2|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117 	ENST00000421503.2|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117
hg19_v2_chr17_-_27621125_27621143	0.00483198	UUGUUCG	ENST00000579665.1|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2 	ENST00000225388.4|NUFIP2|ENSG00000108256.4|nuclear fragile X mental retardation protein interacting protein 2
hg19_v2_chr15_+_41709302_41709348	0.0048092	UUGUUCG	ENST00000389629.4|RTF1|ENSG00000137815.10|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr1_+_2985760_2985775	0.00466567	UUGUUCG	ENST00000378391.2|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000514189.1|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000270722.5|PRDM16|ENSG00000142611.12|PR domain containing 16
hg19_v2_chr1_-_213189108_213189154	0.00462809	UUGUUCG	ENST00000535388.1|ANGEL2|ENSG00000174606.8|angel homolog 2 (Drosophila)
hg19_v2_chr15_+_81071684_81071719	0.00437806	UUGUUCG	ENST00000220244.3|KIAA1199|ENSG00000103888.11|KIAA1199 	ENST00000394685.3|KIAA1199|ENSG00000103888.11|KIAA1199 	ENST00000356249.5|KIAA1199|ENSG00000103888.11|KIAA1199
hg19_v2_chr10_-_71930222_71930280	0.00436541	UUGUUCG	ENST00000458634.2|SAR1A|ENSG00000079332.10|SAR1 homolog A (S. cerevisiae) 	ENST00000373239.2|SAR1A|ENSG00000079332.10|SAR1 homolog A (S. cerevisiae) 	ENST00000373242.2|SAR1A|ENSG00000079332.10|SAR1 homolog A (S. cerevisiae) 	ENST00000373241.4|SAR1A|ENSG00000079332.10|SAR1 homolog A (S. cerevisiae)
hg19_v2_chr16_+_56965960_56966072	0.00431875	UUGUUCG	ENST00000439977.2|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 	ENST00000344114.4|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 	ENST00000300302.5|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 	ENST00000379792.2|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
hg19_v2_chr4_+_72204755_72204778	0.00426294	UUGUUCG	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr7_-_558876_559046	0.00417309	UUGUUCG	ENST00000354513.5|PDGFA|ENSG00000197461.9|platelet-derived growth factor alpha polypeptide 	ENST00000402802.3|PDGFA|ENSG00000197461.9|platelet-derived growth factor alpha polypeptide
hg19_v2_chr8_+_125551338_125551425	0.00404267	UUGUUCG	ENST00000276689.3|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000518008.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000522532.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 	ENST00000517367.1|NDUFB9|ENSG00000147684.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa
hg19_v2_chr1_+_66999799_66999965	0.0037423	UUGUUCG	ENST00000371035.3|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000371036.3|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000371037.4|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr7_+_100797678_100797708	0.00367604	UUGUUCG	ENST00000337619.5|AP1S1|ENSG00000106367.9|adaptor-related protein complex 1, sigma 1 subunit
hg19_v2_chr2_+_155554797_155554837	0.00348203	UUGUUCG	ENST00000295101.2|KCNJ3|ENSG00000162989.3|potassium inwardly-rectifying channel, subfamily J, member 3
hg19_v2_chr1_+_15853308_15853413	0.00344079	UUGUUCG	ENST00000375838.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375847.3|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375849.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16
hg19_v2_chr12_-_51420128_51420183	0.00339742	UUGUUCG	ENST00000262051.7|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000547732.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000262052.5|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000546488.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000550714.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000548193.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000547579.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000546743.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
hg19_v2_chr1_+_180601139_180601180	0.00317281	UUGUUCG	ENST00000367590.4|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1 	ENST00000367589.3|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1
hg19_v2_chr12_-_120806960_120806985	0.00309808	UUGUUCG	ENST00000257552.2|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chrX_+_95939711_95939786	0.00304743	UUGUUCG	ENST00000373049.4|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2 	ENST00000324765.8|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2
hg19_v2_chr9_-_127533519_127533576	0.00301285	UUGUUCG	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr1_-_67896095_67896106	0.00295157	UUGUUCG	ENST00000370994.4|SERBP1|ENSG00000142864.10|SERPINE1 mRNA binding protein 1
hg19_v2_chrX_+_73641286_73641400	0.00288999	UUGUUCG	ENST00000587091.1|SLC16A2|ENSG00000147100.5|solute carrier family 16, member 2 (thyroid hormone transporter)
hg19_v2_chr10_+_126490354_126490395	0.00279206	UUGUUCG	ENST00000298492.5|FAM175B|ENSG00000165660.7|family with sequence similarity 175, member B
hg19_v2_chrX_-_18690210_18690230	0.00275402	UUGUUCG	ENST00000379984.3|RS1|ENSG00000102104.8|retinoschisin 1
hg19_v2_chr3_-_128369643_128369692	0.00251904	UUGUUCG	ENST00000296255.3|RPN1|ENSG00000163902.7|ribophorin I
hg19_v2_chr9_-_38069208_38069267	0.00248674	UUGUUCG	ENST00000377707.3|SHB|ENSG00000107338.8|Src homology 2 domain containing adaptor protein B 	ENST00000377700.4|SHB|ENSG00000107338.8|Src homology 2 domain containing adaptor protein B
hg19_v2_chr11_-_88796803_88796827	0.0023167	UUGUUCG	ENST00000418177.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5 	ENST00000455756.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5
hg19_v2_chr19_+_16607122_16607274	0.00230164	UUGUUCG	ENST00000221671.3|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44 	ENST00000594035.1|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44 	ENST00000599550.1|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44 	ENST00000594813.1|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44
hg19_v2_chr1_+_110009215_110009250	0.00227726	UUGUUCG	ENST00000369872.3|SYPL2|ENSG00000143028.7|synaptophysin-like 2
hg19_v2_chr18_+_32558208_32558340	0.00215807	UUGUUCG	ENST00000436190.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr9_+_115983808_115983880	0.00207587	UUGUUCG	ENST00000374210.6|SLC31A1|ENSG00000136868.9|solute carrier family 31 (copper transporter), member 1 	ENST00000374212.4|SLC31A1|ENSG00000136868.9|solute carrier family 31 (copper transporter), member 1
hg19_v2_chr15_+_57210818_57210930	0.00206005	UUGUUCG	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr19_-_17799008_17799122	0.0019007	UUGUUCG	ENST00000519716.2|UNC13A|ENSG00000130477.10|unc-13 homolog A (C. elegans)
hg19_v2_chr7_+_139044621_139044725	0.00187588	UUGUUCG	ENST00000354926.4|C7orf55-LUC7L2|ENSG00000146963.13|C7orf55-LUC7L2 readthrough
hg19_v2_chr2_-_74405929_74406028	0.0018301	UUGUUCG	ENST00000396049.4|MOB1A|ENSG00000114978.13|MOB kinase activator 1A
hg19_v2_chr3_+_185303962_185304021	0.00180395	UUGUUCG	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr5_+_145583156_145583180	0.00136479	UUGUUCG	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr3_+_23244780_23244837	0.00122178	UUGUUCG	ENST00000396703.1|UBE2E2|ENSG00000182247.5|ubiquitin-conjugating enzyme E2E 2
hg19_v2_chr17_-_60142609_60142657	0.00121818	UUGUUCG	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr1_-_205601064_205601090	0.00119625	UUGUUCG	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr2_+_242641442_242641478	0.00105729	UUGUUCG	ENST00000313552.6|ING5|ENSG00000168395.10|inhibitor of growth family, member 5 	ENST00000406941.1|ING5|ENSG00000168395.10|inhibitor of growth family, member 5
hg19_v2_chr9_+_26956371_26956463	0.000835359	UUGUUCG	ENST00000380062.5|IFT74|ENSG00000096872.11|intraflagellar transport 74 homolog (Chlamydomonas) 	ENST00000518614.1|IFT74|ENSG00000096872.11|intraflagellar transport 74 homolog (Chlamydomonas)
hg19_v2_chr6_+_159084188_159084212	0.000817719	UUGUUCG	ENST00000367081.3|SYTL3|ENSG00000164674.11|synaptotagmin-like 3
hg19_v2_chr1_+_199996702_199996732	0.000719794	UUGUUCG	ENST00000367362.3|NR5A2|ENSG00000116833.9|nuclear receptor subfamily 5, group A, member 2
hg19_v2_chr18_+_42260861_42260882	0.00064653	UUGUUCG	ENST00000282030.5|SETBP1|ENSG00000152217.12|SET binding protein 1
hg19_v2_chr18_+_18943554_18943587	0.000531505	UUGUUCG	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr17_-_617949_618107	0.000512452	UUGUUCG	ENST00000401468.3|VPS53|ENSG00000141252.15|vacuolar protein sorting 53 homolog (S. cerevisiae) 	ENST00000574029.1|VPS53|ENSG00000141252.15|vacuolar protein sorting 53 homolog (S. cerevisiae) 	ENST00000291074.5|VPS53|ENSG00000141252.15|vacuolar protein sorting 53 homolog (S. cerevisiae) 	ENST00000571805.1|VPS53|ENSG00000141252.15|vacuolar protein sorting 53 homolog (S. cerevisiae) 	ENST00000437048.2|VPS53|ENSG00000141252.15|vacuolar protein sorting 53 homolog (S. cerevisiae) 	ENST00000446250.2|VPS53|ENSG00000141252.15|vacuolar protein sorting 53 homolog (S. cerevisiae)
hg19_v2_chr6_-_132834184_132834337	0.000194811	UUGUUCG	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr13_-_72441315_72441454	0.000180528	UUGUUCG	ENST00000305425.4|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila) 	ENST00000313174.7|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila) 	ENST00000354591.4|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila)
