hg19_v2_chr5_+_52776228_52776245	5.41931	ACAGUAU	ENST00000256759.3|FST|ENSG00000134363.7|follistatin
hg19_v2_chrX_+_102631248_102631335	4.94264	ACAGUAU	ENST00000361298.4|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372645.3|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372635.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr8_-_41166953_41167016	4.92872	ACAGUAU	ENST00000220772.3|SFRP1|ENSG00000104332.7|secreted frizzled-related protein 1
hg19_v2_chr16_-_65155833_65155976	4.01682	ACAGUAU	ENST00000566827.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000394156.3|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000562998.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast)
hg19_v2_chr1_-_95392635_95392834	3.58259	ACAGUAU	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr15_+_39873268_39873294	3.55269	ACAGUAU	ENST00000397591.2|THBS1|ENSG00000137801.9|thrombospondin 1 	ENST00000260356.5|THBS1|ENSG00000137801.9|thrombospondin 1
hg19_v2_chr9_-_117880477_117880536	2.91454	ACAGUAU	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr2_-_227664474_227664508	2.88843	ACAGUAU	ENST00000305123.5|IRS1|ENSG00000169047.5|insulin receptor substrate 1
hg19_v2_chr12_-_15942309_15942330	2.76914	ACAGUAU	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr5_-_127873659_127873735	2.73655	ACAGUAU	ENST00000262464.4|FBN2|ENSG00000138829.6|fibrillin 2
hg19_v2_chr3_+_30648066_30648167	2.28818	ACAGUAU	ENST00000359013.4|TGFBR2|ENSG00000163513.13|transforming growth factor, beta receptor II (70/80kDa)
hg19_v2_chr6_+_121756809_121756838	2.25008	ACAGUAU	ENST00000282561.3|GJA1|ENSG00000152661.7|gap junction protein, alpha 1, 43kDa
hg19_v2_chr8_+_136469684_136469710	2.00133	ACAGUAU	ENST00000355849.5|KHDRBS3|ENSG00000131773.9|KH domain containing, RNA binding, signal transduction associated 3
hg19_v2_chr4_-_7873981_7874044	1.89156	ACAGUAU	ENST00000360265.4|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr10_+_60272814_60272900	1.87544	ACAGUAU	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr20_-_14318248_14318264	1.83971	ACAGUAU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr4_-_99579733_99579789	1.83081	ACAGUAU	ENST00000305798.3|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr21_-_27542972_27543138	1.83041	ACAGUAU	ENST00000346798.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000439274.2|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000354192.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000348990.5|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000357903.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000358918.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000359726.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr10_-_126849068_126849138	1.82788	ACAGUAU	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr14_-_52535712_52535753	1.66866	ACAGUAU	ENST00000216286.5|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen) 	ENST00000541773.1|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen)
hg19_v2_chr3_-_98620500_98620547	1.57716	ACAGUAU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr6_+_114178512_114178586	1.54678	ACAGUAU	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr9_+_132934835_132934857	1.48816	ACAGUAU	ENST00000372398.3|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr13_-_107187462_107187462	1.44994	ACAGUAU	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr12_-_76425368_76425384	1.42235	ACAGUAU	ENST00000602540.1|PHLDA1|ENSG00000139289.9|pleckstrin homology-like domain, family A, member 1
hg19_v2_chr15_-_48937982_48938046	1.40513	ACAGUAU	ENST00000316623.5|FBN1|ENSG00000166147.9|fibrillin 1
hg19_v2_chr14_+_85996471_85996497	1.35803	ACAGUAU	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr16_-_10674528_10674555	1.3501	ACAGUAU	ENST00000359543.3|EMP2|ENSG00000213853.5|epithelial membrane protein 2
hg19_v2_chr20_+_19867150_19867175	1.27446	ACAGUAU	ENST00000255006.6|RIN2|ENSG00000132669.8|Ras and Rab interactor 2
hg19_v2_chr1_-_225840747_225840860	1.26984	ACAGUAU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr8_-_42397037_42397121	1.24616	ACAGUAU	ENST00000342228.3|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr12_+_13349650_13349667	1.23781	ACAGUAU	ENST00000256951.5|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000431267.2|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000542474.1|EMP1|ENSG00000134531.5|epithelial membrane protein 1 	ENST00000544053.1|EMP1|ENSG00000134531.5|epithelial membrane protein 1
hg19_v2_chr3_+_36421826_36421844	1.18447	ACAGUAU	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr11_-_115375107_115375283	1.15959	ACAGUAU	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr10_+_63661053_63661079	1.14852	ACAGUAU	ENST00000279873.7|ARID5B|ENSG00000150347.10|AT rich interactive domain 5B (MRF1-like)
hg19_v2_chr12_-_26278030_26278060	1.13572	ACAGUAU	ENST00000242728.4|BHLHE41|ENSG00000123095.5|basic helix-loop-helix family, member e41
hg19_v2_chr8_-_42065187_42065242	1.13228	ACAGUAU	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chrX_-_99891796_99891811	1.09259	ACAGUAU	ENST00000373020.4|TSPAN6|ENSG00000000003.10|tetraspanin 6
hg19_v2_chr12_+_4430371_4430429	1.08283	ACAGUAU	ENST00000179259.4|C12orf5|ENSG00000078237.4|chromosome 12 open reading frame 5
hg19_v2_chr3_+_99357319_99357454	1.01766	ACAGUAU	ENST00000452013.1|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000261037.3|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000273342.4|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1
hg19_v2_chr21_-_43346790_43346823	1.01726	ACAGUAU	ENST00000329623.7|C2CD2|ENSG00000157617.12|C2 calcium-dependent domain containing 2
hg19_v2_chr18_+_8717369_8717384	1.01223	ACAGUAU	ENST00000359865.3|SOGA2|ENSG00000168502.13|SOGA family member 2 	ENST00000400050.3|SOGA2|ENSG00000168502.13|SOGA family member 2 	ENST00000306285.7|SOGA2|ENSG00000168502.13|SOGA family member 2
hg19_v2_chr7_+_116139424_116139444	0.991523	ACAGUAU	ENST00000222693.4|CAV2|ENSG00000105971.10|caveolin 2
hg19_v2_chr2_-_37899323_37899374	0.963316	ACAGUAU	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr2_-_235405679_235405739	0.922867	ACAGUAU	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr3_+_105085734_105085760	0.920492	ACAGUAU	ENST00000306107.5|ALCAM|ENSG00000170017.8|activated leukocyte cell adhesion molecule
hg19_v2_chr7_+_55086794_55086811	0.88908	ACAGUAU	ENST00000275493.2|EGFR|ENSG00000146648.11|epidermal growth factor receptor 	ENST00000442591.1|EGFR|ENSG00000146648.11|epidermal growth factor receptor
hg19_v2_chr13_-_77460525_77460548	0.884127	ACAGUAU	ENST00000377474.2|KCTD12|ENSG00000178695.4|potassium channel tetramerization domain containing 12 	ENST00000317765.2|KCTD12|ENSG00000178695.4|potassium channel tetramerization domain containing 12
hg19_v2_chr7_-_27213893_27213954	0.878785	ACAGUAU	ENST00000283921.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr1_-_186649543_186649563	0.866558	ACAGUAU	ENST00000367468.5|PTGS2|ENSG00000073756.7|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr16_+_69221028_69221092	0.858339	ACAGUAU	ENST00000336278.4|SNTB2|ENSG00000168807.12|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
hg19_v2_chr3_-_124774802_124774852	0.816284	ACAGUAU	ENST00000311127.4|HEG1|ENSG00000173706.8|heart development protein with EGF-like domains 1
hg19_v2_chr6_-_139695757_139695795	0.816061	ACAGUAU	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr4_+_78078304_78078406	0.815468	ACAGUAU	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr5_+_82767284_82767310	0.795564	ACAGUAU	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr7_-_47621736_47621747	0.76635	ACAGUAU	ENST00000311160.9|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr19_+_18794470_18794512	0.755108	ACAGUAU	ENST00000321949.8|CRTC1|ENSG00000105662.11|CREB regulated transcription coactivator 1 	ENST00000338797.6|CRTC1|ENSG00000105662.11|CREB regulated transcription coactivator 1
hg19_v2_chr9_+_112810878_112810985	0.739933	ACAGUAU	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr3_+_107241783_107241850	0.736805	ACAGUAU	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr18_+_22006580_22006614	0.726486	ACAGUAU	ENST00000284202.4|IMPACT|ENSG00000154059.5|impact RWD domain protein
hg19_v2_chrX_+_51486481_51486549	0.704735	ACAGUAU	ENST00000340438.4|GSPT2|ENSG00000189369.7|G1 to S phase transition 2
hg19_v2_chr6_+_53659746_53659817	0.687676	ACAGUAU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr5_-_38595498_38595514	0.68702	ACAGUAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr3_+_51428704_51428737	0.67775	ACAGUAU	ENST00000323686.4|RBM15B|ENSG00000179837.6|RNA binding motif protein 15B
hg19_v2_chr7_-_81399438_81399514	0.6716	ACAGUAU	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr6_+_134210243_134210276	0.665193	ACAGUAU	ENST00000367882.4|TCF21|ENSG00000118526.6|transcription factor 21
hg19_v2_chr15_-_59665062_59665099	0.655266	ACAGUAU	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr18_+_3451646_3451722	0.648114	ACAGUAU	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr9_+_112542572_112542590	0.647516	ACAGUAU	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr21_-_39288743_39288765	0.645059	ACAGUAU	ENST00000609713.1|KCNJ6|ENSG00000157542.8|potassium inwardly-rectifying channel, subfamily J, member 6
hg19_v2_chr8_-_67525473_67525518	0.631124	ACAGUAU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr5_-_176981417_176981508	0.625068	ACAGUAU	ENST00000514747.1|FAM193B|ENSG00000146067.11|family with sequence similarity 193, member B 	ENST00000443375.2|FAM193B|ENSG00000146067.11|family with sequence similarity 193, member B 	ENST00000329540.5|FAM193B|ENSG00000146067.11|family with sequence similarity 193, member B
hg19_v2_chr16_-_74640986_74641022	0.6055	ACAGUAU	ENST00000422840.2|GLG1|ENSG00000090863.7|golgi glycoprotein 1 	ENST00000565260.1|GLG1|ENSG00000090863.7|golgi glycoprotein 1 	ENST00000447066.2|GLG1|ENSG00000090863.7|golgi glycoprotein 1 	ENST00000205061.5|GLG1|ENSG00000090863.7|golgi glycoprotein 1
hg19_v2_chr8_-_23712312_23712328	0.596386	ACAGUAU	ENST00000290271.2|STC1|ENSG00000159167.7|stanniocalcin 1
hg19_v2_chr20_+_11871371_11871428	0.589578	ACAGUAU	ENST00000254977.3|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr2_-_216300784_216300895	0.583888	ACAGUAU	ENST00000421182.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000432072.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000323926.6|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000336916.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357867.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000359671.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000346544.3|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000345488.5|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357009.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000446046.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000356005.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000443816.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000426059.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000354785.4|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr6_+_71998506_71998522	0.58311	ACAGUAU	ENST00000370435.4|OGFRL1|ENSG00000119900.7|opioid growth factor receptor-like 1
hg19_v2_chr9_-_14314066_14314075	0.571173	ACAGUAU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr4_+_146402925_146402957	0.564117	ACAGUAU	ENST00000302085.4|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr3_-_136471204_136471249	0.563205	ACAGUAU	ENST00000480733.1|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000383202.2|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000236698.5|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000434713.2|STAG1|ENSG00000118007.8|stromal antigen 1
hg19_v2_chr7_-_131241361_131241398	0.553763	ACAGUAU	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr11_+_9685604_9685706	0.553011	ACAGUAU	ENST00000447399.2|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit 	ENST00000318950.6|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit
hg19_v2_chr18_-_21977748_21977823	0.551185	ACAGUAU	ENST00000399441.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A 	ENST00000319481.3|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr5_+_86564739_86564791	0.548969	ACAGUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr21_-_28338732_28338832	0.547975	ACAGUAU	ENST00000284987.5|ADAMTS5|ENSG00000154736.5|ADAM metallopeptidase with thrombospondin type 1 motif, 5
hg19_v2_chrX_-_51239425_51239453	0.536271	ACAGUAU	ENST00000375992.3|NUDT11|ENSG00000196368.4|nudix (nucleoside diphosphate linked moiety X)-type motif 11
hg19_v2_chr16_-_17564738_17564834	0.535108	ACAGUAU	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr2_+_201676256_201676323	0.531647	ACAGUAU	ENST00000452206.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000410110.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000409600.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr8_+_98881268_98881382	0.531402	ACAGUAU	ENST00000254898.5|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000524308.1|MATN2|ENSG00000132561.9|matrilin 2 	ENST00000522025.2|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr1_-_103574024_103574063	0.521609	ACAGUAU	ENST00000512756.1|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000370096.3|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000358392.2|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000353414.4|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1
hg19_v2_chr3_-_122233723_122233797	0.512515	ACAGUAU	ENST00000493510.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000344337.6|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000476916.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000465882.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5)
hg19_v2_chr4_+_26585538_26585680	0.505407	ACAGUAU	ENST00000264866.4|TBC1D19|ENSG00000109680.6|TBC1 domain family, member 19
hg19_v2_chr5_+_176560742_176560926	0.489345	ACAGUAU	ENST00000439151.2|NSD1|ENSG00000165671.14|nuclear receptor binding SET domain protein 1
hg19_v2_chr1_-_21671968_21672009	0.474895	ACAGUAU	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr7_+_116312411_116312502	0.467759	ACAGUAU	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr17_-_78450398_78450413	0.466358	ACAGUAU	ENST00000306773.4|NPTX1|ENSG00000171246.5|neuronal pentraxin I
hg19_v2_chr16_+_86544113_86544145	0.464674	ACAGUAU	ENST00000262426.4|FOXF1|ENSG00000103241.5|forkhead box F1
hg19_v2_chr10_+_60094735_60094749	0.458133	ACAGUAU	ENST00000373910.4|UBE2D1|ENSG00000072401.10|ubiquitin-conjugating enzyme E2D 1
hg19_v2_chr7_-_6312206_6312308	0.453551	ACAGUAU	ENST00000350796.3|CYTH3|ENSG00000008256.11|cytohesin 3
hg19_v2_chr10_-_79686284_79686527	0.443794	ACAGUAU	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chr12_+_27485823_27485868	0.439466	ACAGUAU	ENST00000395901.2|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2 	ENST00000546179.1|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2
hg19_v2_chr5_-_172198190_172198206	0.435971	ACAGUAU	ENST00000239223.3|DUSP1|ENSG00000120129.5|dual specificity phosphatase 1
hg19_v2_chr16_-_47177874_47177922	0.429258	ACAGUAU	ENST00000562435.1|NETO2|ENSG00000171208.5|neuropilin (NRP) and tolloid (TLL)-like 2
hg19_v2_chr2_+_5832799_5832799	0.428803	ACAGUAU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr9_-_23821273_23821313	0.408531	ACAGUAU	ENST00000380110.4|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr5_+_141488070_141488094	0.400058	ACAGUAU	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr2_+_198380289_198380305	0.396956	ACAGUAU	ENST00000233892.4|MOB4|ENSG00000115540.10|MOB family member 4, phocein 	ENST00000409916.1|MOB4|ENSG00000115540.10|MOB family member 4, phocein
hg19_v2_chr12_-_57505121_57505216	0.396313	ACAGUAU	ENST00000538913.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000537215.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000454075.3|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000554825.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000553275.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000300134.3|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr15_-_83876758_83876770	0.395226	ACAGUAU	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr6_+_148663729_148663847	0.394812	ACAGUAU	ENST00000367467.3|SASH1|ENSG00000111961.12|SAM and SH3 domain containing 1
hg19_v2_chr7_-_27196267_27196311	0.389387	ACAGUAU	ENST00000242159.3|HOXA7|ENSG00000122592.6|homeobox A7
hg19_v2_chr9_+_77112244_77112281	0.38597	ACAGUAU	ENST00000376896.3|RORB|ENSG00000198963.6|RAR-related orphan receptor B
hg19_v2_chr14_-_81687197_81687280	0.385573	ACAGUAU	ENST00000553612.1|GTF2A1|ENSG00000165417.7|general transcription factor IIA, 1, 19/37kDa
hg19_v2_chr9_-_16870704_16870841	0.378216	ACAGUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr8_+_79578282_79578334	0.369622	ACAGUAU	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr4_-_139163491_139163510	0.362089	ACAGUAU	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr1_+_87170247_87170276	0.362029	ACAGUAU	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr4_+_126237554_126237554	0.359368	ACAGUAU	ENST00000394329.3|FAT4|ENSG00000196159.7|FAT atypical cadherin 4
hg19_v2_chr4_+_183164574_183164586	0.359324	ACAGUAU	ENST00000511685.1|TENM3|ENSG00000218336.3|teneurin transmembrane protein 3
hg19_v2_chr18_-_61089665_61089733	0.358615	ACAGUAU	ENST00000238497.5|VPS4B|ENSG00000119541.5|vacuolar protein sorting 4 homolog B (S. cerevisiae)
hg19_v2_chr6_+_143929307_143929322	0.357909	ACAGUAU	ENST00000427704.2|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2 	ENST00000305766.6|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2
hg19_v2_chr19_+_45973120_45973171	0.355888	ACAGUAU	ENST00000592811.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000586615.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr15_+_96873921_96873946	0.343337	ACAGUAU	ENST00000394166.3|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr1_+_200708671_200708744	0.342844	ACAGUAU	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chrX_-_108976521_108976632	0.341443	ACAGUAU	ENST00000469796.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000502391.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000508092.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000340800.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000348502.6|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr2_-_161056802_161056815	0.332795	ACAGUAU	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr5_-_95297678_95297775	0.328452	ACAGUAU	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr10_+_8096631_8096660	0.326838	ACAGUAU	ENST00000379328.3|GATA3|ENSG00000107485.11|GATA binding protein 3
hg19_v2_chr11_-_27494279_27494308	0.324509	ACAGUAU	ENST00000379214.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr9_+_128509624_128509658	0.323377	ACAGUAU	ENST00000342287.5|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3 	ENST00000373487.4|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3
hg19_v2_chr11_+_129939779_129939801	0.321326	ACAGUAU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr1_+_36621529_36621585	0.31661	ACAGUAU	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr15_-_30114622_30114706	0.311416	ACAGUAU	ENST00000495972.2|TJP1|ENSG00000104067.12|tight junction protein 1 	ENST00000346128.6|TJP1|ENSG00000104067.12|tight junction protein 1
hg19_v2_chr1_+_186798073_186798147	0.310429	ACAGUAU	ENST00000367466.3|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent) 	ENST00000442353.2|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent)
hg19_v2_chr18_-_18691739_18691812	0.310304	ACAGUAU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr21_-_36260980_36261011	0.309089	ACAGUAU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr15_-_34502278_34502318	0.308446	ACAGUAU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr10_-_3827417_3827473	0.307578	ACAGUAU	ENST00000497571.1|KLF6|ENSG00000067082.10|Kruppel-like factor 6 	ENST00000542957.1|KLF6|ENSG00000067082.10|Kruppel-like factor 6
hg19_v2_chr15_-_56209306_56209344	0.30709	ACAGUAU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr10_-_735553_735683	0.306808	ACAGUAU	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr16_-_70719925_70719989	0.306307	ACAGUAU	ENST00000338779.6|MTSS1L|ENSG00000132613.10|metastasis suppressor 1-like
hg19_v2_chr4_-_129208940_129208976	0.302521	ACAGUAU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr17_+_61086917_61086921	0.299126	ACAGUAU	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr1_+_220701456_220701574	0.299125	ACAGUAU	ENST00000366918.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1 	ENST00000402574.1|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr6_-_82462425_82462491	0.295636	ACAGUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr1_+_198126093_198126207	0.289295	ACAGUAU	ENST00000367385.4|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000442588.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000538004.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7
hg19_v2_chr14_+_65171099_65171210	0.284155	ACAGUAU	ENST00000247226.7|PLEKHG3|ENSG00000126822.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
hg19_v2_chr16_+_8891670_8891734	0.280962	ACAGUAU	ENST00000268261.4|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000539622.1|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000569958.1|PMM2|ENSG00000140650.7|phosphomannomutase 2 	ENST00000537352.1|PMM2|ENSG00000140650.7|phosphomannomutase 2
hg19_v2_chr14_-_82000140_82000229	0.280413	ACAGUAU	ENST00000555824.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000557372.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000336735.4|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans)
hg19_v2_chr8_-_53322303_53322340	0.279944	ACAGUAU	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr11_+_69924397_69924449	0.275471	ACAGUAU	ENST00000355303.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr5_-_132299313_132299334	0.272818	ACAGUAU	ENST00000265343.5|AFF4|ENSG00000072364.8|AF4/FMR2 family, member 4
hg19_v2_chrX_-_41782249_41782287	0.271698	ACAGUAU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr12_-_28124903_28124957	0.271331	ACAGUAU	ENST00000395872.1|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone 	ENST00000354417.3|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone 	ENST00000201015.4|PTHLH|ENSG00000087494.11|parathyroid hormone-like hormone
hg19_v2_chr16_+_67927147_67927180	0.269929	ACAGUAU	ENST00000291041.5|PSKH1|ENSG00000159792.5|protein serine kinase H1
hg19_v2_chr3_-_99833333_99833357	0.266122	ACAGUAU	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr3_-_119813264_119813272	0.262092	ACAGUAU	ENST00000264235.8|GSK3B|ENSG00000082701.10|glycogen synthase kinase 3 beta
hg19_v2_chr12_-_51477333_51477426	0.262045	ACAGUAU	ENST00000228515.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548206.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000546935.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548981.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2
hg19_v2_chr3_-_114790179_114790222	0.256831	ACAGUAU	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr15_-_65809581_65809617	0.255171	ACAGUAU	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr6_+_107811162_107811196	0.248566	ACAGUAU	ENST00000317357.5|SOBP|ENSG00000112320.7|sine oculis binding protein homolog (Drosophila)
hg19_v2_chr1_+_155829286_155829340	0.24817	ACAGUAU	ENST00000368324.4|SYT11|ENSG00000132718.7|synaptotagmin XI
hg19_v2_chr1_+_82266053_82266082	0.244449	ACAGUAU	ENST00000370715.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370713.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000319517.6|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370717.2|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000394879.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000271029.4|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000335786.5|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr13_-_50367057_50367142	0.242732	ACAGUAU	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chr14_+_45431379_45431465	0.242256	ACAGUAU	ENST00000361577.3|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B 	ENST00000361462.2|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B 	ENST00000382233.2|FAM179B|ENSG00000198718.8|family with sequence similarity 179, member B
hg19_v2_chr13_+_49550015_49550070	0.237669	ACAGUAU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr20_-_61493115_61493187	0.234892	ACAGUAU	ENST00000335351.3|TCFL5|ENSG00000101190.8|transcription factor-like 5 (basic helix-loop-helix) 	ENST00000217162.5|TCFL5|ENSG00000101190.8|transcription factor-like 5 (basic helix-loop-helix)
hg19_v2_chr9_-_107690420_107690518	0.227028	ACAGUAU	ENST00000423487.2|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374733.1|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374736.3|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1
hg19_v2_chr6_+_89790490_89790506	0.224188	ACAGUAU	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr17_-_58469474_58469511	0.224046	ACAGUAU	ENST00000300896.4|USP32|ENSG00000170832.8|ubiquitin specific peptidase 32
hg19_v2_chr14_+_75745477_75745680	0.219543	ACAGUAU	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr6_-_8064567_8064652	0.216118	ACAGUAU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr17_-_4269768_4269835	0.212152	ACAGUAU	ENST00000396981.2|UBE2G1|ENSG00000132388.8|ubiquitin-conjugating enzyme E2G 1
hg19_v2_chr13_-_48575443_48575464	0.210886	ACAGUAU	ENST00000378654.3|SUCLA2|ENSG00000136143.9|succinate-CoA ligase, ADP-forming, beta subunit
hg19_v2_chr16_-_53737795_53737850	0.210316	ACAGUAU	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr2_-_183903133_183903210	0.208365	ACAGUAU	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr1_-_38512450_38512474	0.206365	ACAGUAU	ENST00000373012.2|POU3F1|ENSG00000185668.5|POU class 3 homeobox 1
hg19_v2_chr15_+_77223960_77223994	0.205266	ACAGUAU	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr3_+_150321068_150321123	0.204651	ACAGUAU	ENST00000471696.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000477889.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000485923.1|SELT|ENSG00000198843.8|Selenoprotein T
hg19_v2_chr4_+_72204755_72204778	0.200909	ACAGUAU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr4_-_54930790_54930857	0.199223	ACAGUAU	ENST00000263921.3|CHIC2|ENSG00000109220.6|cysteine-rich hydrophobic domain 2
hg19_v2_chr16_+_27561449_27561481	0.19561	ACAGUAU	ENST00000261588.4|KIAA0556|ENSG00000047578.8|KIAA0556
hg19_v2_chr2_-_178128528_178128574	0.194157	ACAGUAU	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr1_-_78148324_78148365	0.194081	ACAGUAU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr10_+_93558069_93558154	0.192369	ACAGUAU	ENST00000371627.4|TNKS2|ENSG00000107854.5|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
hg19_v2_chr3_-_116164306_116164380	0.190713	ACAGUAU	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr16_-_19533404_19533467	0.188829	ACAGUAU	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr3_+_130569429_130569479	0.187157	ACAGUAU	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr6_-_132834184_132834337	0.186717	ACAGUAU	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr12_-_90049828_90049847	0.182291	ACAGUAU	ENST00000261173.2|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1 	ENST00000348959.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr9_-_123476719_123476810	0.18186	ACAGUAU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr14_-_99737565_99737617	0.180766	ACAGUAU	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr8_+_61429416_61429502	0.163715	ACAGUAU	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr10_+_96162242_96162283	0.161242	ACAGUAU	ENST00000225235.4|TBC1D12|ENSG00000108239.8|TBC1 domain family, member 12
hg19_v2_chr10_+_95256356_95256408	0.159696	ACAGUAU	ENST00000371485.3|CEP55|ENSG00000138180.11|centrosomal protein 55kDa
hg19_v2_chr10_+_76586348_76586400	0.159008	ACAGUAU	ENST00000372724.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B 	ENST00000287239.4|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B 	ENST00000372714.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B
hg19_v2_chr5_+_71403061_71403169	0.156888	ACAGUAU	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr15_-_77363513_77363570	0.15579	ACAGUAU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr7_-_120498357_120498456	0.154906	ACAGUAU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr6_-_56707943_56708013	0.152152	ACAGUAU	ENST00000370769.4|DST|ENSG00000151914.13|dystonin 	ENST00000421834.2|DST|ENSG00000151914.13|dystonin 	ENST00000312431.6|DST|ENSG00000151914.13|dystonin 	ENST00000361203.3|DST|ENSG00000151914.13|dystonin 	ENST00000523817.1|DST|ENSG00000151914.13|dystonin
hg19_v2_chr17_+_36508111_36508128	0.150006	ACAGUAU	ENST00000331159.5|SOCS7|ENSG00000174111.8|suppressor of cytokine signaling 7 	ENST00000577233.1|SOCS7|ENSG00000174111.8|suppressor of cytokine signaling 7
hg19_v2_chr17_-_58603568_58603610	0.149358	ACAGUAU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr17_+_2496971_2497040	0.148331	ACAGUAU	ENST00000397195.5|PAFAH1B1|ENSG00000007168.8|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
hg19_v2_chr19_-_49622348_49622407	0.148189	ACAGUAU	ENST00000408991.2|C19orf73|ENSG00000221916.2|chromosome 19 open reading frame 73
hg19_v2_chr8_-_60031762_60031803	0.144785	ACAGUAU	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr6_-_52926539_52926668	0.143673	ACAGUAU	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr10_-_48438974_48439023	0.143167	ACAGUAU	ENST00000224605.2|GDF10|ENSG00000107623.4|growth differentiation factor 10
hg19_v2_chr15_+_59279851_59279880	0.142462	ACAGUAU	ENST00000348370.4|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000434298.1|RNF111|ENSG00000157450.11|ring finger protein 111 	ENST00000559160.1|RNF111|ENSG00000157450.11|ring finger protein 111
hg19_v2_chr20_+_32077880_32077951	0.138545	ACAGUAU	ENST00000342704.6|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000375279.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr3_-_81811312_81811312	0.135872	ACAGUAU	ENST00000429644.2|GBE1|ENSG00000114480.8|glucan (1,4-alpha-), branching enzyme 1
hg19_v2_chr3_+_37284668_37284771	0.135594	ACAGUAU	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr9_-_127533519_127533576	0.134471	ACAGUAU	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chrX_-_77041685_77041716	0.134423	ACAGUAU	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr7_+_18535346_18535399	0.131734	ACAGUAU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr8_-_13372395_13372429	0.130819	ACAGUAU	ENST00000276297.4|DLC1|ENSG00000164741.10|deleted in liver cancer 1 	ENST00000511869.1|DLC1|ENSG00000164741.10|deleted in liver cancer 1
hg19_v2_chrX_-_40594755_40594809	0.129305	ACAGUAU	ENST00000324817.1|MED14|ENSG00000180182.6|mediator complex subunit 14
hg19_v2_chr5_+_74632993_74633028	0.127036	ACAGUAU	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chrY_+_25365594_25365701	0.126183	ACAGUAU	ENST00000382449.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382440.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382306.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382434.3|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000449947.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382294.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382433.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382424.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000400493.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382431.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2
hg19_v2_chr4_-_85887503_85887544	0.125967	ACAGUAU	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr17_+_14204389_14204416	0.124989	ACAGUAU	ENST00000360954.2|HS3ST3B1|ENSG00000125430.4|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
hg19_v2_chr9_-_125590818_125590910	0.124192	ACAGUAU	ENST00000259467.4|PDCL|ENSG00000136940.9|phosducin-like
hg19_v2_chr11_-_95657231_95657459	0.122144	ACAGUAU	ENST00000409459.1|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000352297.7|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000393223.3|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000346299.5|MTMR2|ENSG00000087053.14|myotubularin related protein 2
hg19_v2_chr1_-_226374373_226374464	0.121618	ACAGUAU	ENST00000366812.5|ACBD3|ENSG00000182827.8|acyl-CoA binding domain containing 3
hg19_v2_chr18_-_9614515_9614583	0.119172	ACAGUAU	ENST00000400556.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1 	ENST00000400555.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr4_-_103748880_103749047	0.115994	ACAGUAU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr1_+_203764742_203764834	0.115105	ACAGUAU	ENST00000432282.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000453771.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367214.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367212.3|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000332127.4|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A
hg19_v2_chr3_-_56835967_56835995	0.114869	ACAGUAU	ENST00000495373.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3 	ENST00000296315.3|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr14_-_99947168_99947232	0.114137	ACAGUAU	ENST00000331768.5|SETD3|ENSG00000183576.8|SET domain containing 3
hg19_v2_chrX_+_118708493_118708506	0.113087	ACAGUAU	ENST00000371558.2|UBE2A|ENSG00000077721.11|ubiquitin-conjugating enzyme E2A
hg19_v2_chr12_-_88974236_88974256	0.111491	ACAGUAU	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr17_+_16593539_16593639	0.109198	ACAGUAU	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr5_+_14143728_14143829	0.107925	ACAGUAU	ENST00000344204.4|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor 	ENST00000537187.1|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor
hg19_v2_chr9_-_95527079_95527148	0.10708	ACAGUAU	ENST00000356884.6|BICD2|ENSG00000185963.9|bicaudal D homolog 2 (Drosophila) 	ENST00000375512.3|BICD2|ENSG00000185963.9|bicaudal D homolog 2 (Drosophila)
hg19_v2_chr12_+_50135588_50135605	0.106751	ACAGUAU	ENST00000423828.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6 	ENST00000550445.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr4_-_71705590_71705662	0.105029	ACAGUAU	ENST00000254799.6|GRSF1|ENSG00000132463.9|G-rich RNA sequence binding factor 1
hg19_v2_chrY_-_25345070_25345241	0.10453	ACAGUAU	ENST00000382510.4|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000426000.2|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000540248.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000405239.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1
hg19_v2_chr4_+_55524085_55524110	0.101813	ACAGUAU	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr12_+_105501487_105501562	0.0999997	ACAGUAU	ENST00000332180.5|KIAA1033|ENSG00000136051.9|KIAA1033
hg19_v2_chr19_-_3700388_3700500	0.0989684	ACAGUAU	ENST00000589578.1|PIP5K1C|ENSG00000186111.4|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 	ENST00000537021.1|PIP5K1C|ENSG00000186111.4|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 	ENST00000539785.1|PIP5K1C|ENSG00000186111.4|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 	ENST00000335312.3|PIP5K1C|ENSG00000186111.4|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
hg19_v2_chr8_-_74884511_74884546	0.0971937	ACAGUAU	ENST00000518127.1|TCEB1|ENSG00000154582.12|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
hg19_v2_chrY_-_26959519_26959626	0.0966707	ACAGUAU	ENST00000400212.1|DAZ3|ENSG00000187191.10|deleted in azoospermia 3 	ENST00000306737.8|DAZ3|ENSG00000187191.10|deleted in azoospermia 3 	ENST00000315357.7|DAZ3|ENSG00000187191.10|deleted in azoospermia 3 	ENST00000446723.1|DAZ3|ENSG00000187191.10|deleted in azoospermia 3 	ENST00000382365.2|DAZ3|ENSG00000187191.10|deleted in azoospermia 3
hg19_v2_chrX_+_40944871_40944888	0.0924118	ACAGUAU	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr2_-_65357225_65357267	0.0908441	ACAGUAU	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr3_-_52713729_52713784	0.0895363	ACAGUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr9_+_4490394_4490446	0.0888387	ACAGUAU	ENST00000262352.3|SLC1A1|ENSG00000106688.7|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
hg19_v2_chr7_-_93633684_93633695	0.087209	ACAGUAU	ENST00000222547.3|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein 	ENST00000425626.1|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein
hg19_v2_chr17_+_5031687_5031687	0.0867062	ACAGUAU	ENST00000250066.6|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene) 	ENST00000304328.5|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene)
hg19_v2_chr3_+_8775466_8775552	0.084287	ACAGUAU	ENST00000343849.2|CAV3|ENSG00000182533.6|caveolin 3 	ENST00000397368.2|CAV3|ENSG00000182533.6|caveolin 3
hg19_v2_chr18_+_9475668_9475698	0.0833733	ACAGUAU	ENST00000383432.3|RALBP1|ENSG00000017797.7|ralA binding protein 1
hg19_v2_chr1_+_171454659_171454723	0.0818125	ACAGUAU	ENST00000367742.3|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C 	ENST00000338920.4|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C
hg19_v2_chr9_+_78505581_78505621	0.0814552	ACAGUAU	ENST00000376767.3|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5 	ENST00000376752.4|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5
hg19_v2_chr9_+_2621798_2621834	0.0809303	ACAGUAU	ENST00000382100.3|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr11_+_33278811_33279133	0.0795708	ACAGUAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr6_+_158733692_158733692	0.077845	ACAGUAU	ENST00000367094.2|TULP4|ENSG00000130338.8|tubby like protein 4 	ENST00000367097.3|TULP4|ENSG00000130338.8|tubby like protein 4
hg19_v2_chr17_+_57232690_57232860	0.076718	ACAGUAU	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr5_-_79287060_79287093	0.0758043	ACAGUAU	ENST00000512560.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000509852.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000512528.1|MTX3|ENSG00000177034.10|metaxin 3
hg19_v2_chr3_+_23986748_23986761	0.0756708	ACAGUAU	ENST00000312521.4|NR1D2|ENSG00000174738.8|nuclear receptor subfamily 1, group D, member 2
hg19_v2_chr4_+_41362796_41362841	0.0755984	ACAGUAU	ENST00000508501.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512946.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000313860.7|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512632.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512820.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr5_-_107006596_107006651	0.0740027	ACAGUAU	ENST00000333274.6|EFNA5|ENSG00000184349.8|ephrin-A5
hg19_v2_chr16_+_58497567_58497586	0.0727625	ACAGUAU	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chrY_+_26980008_26980087	0.0726822	ACAGUAU	ENST00000382432.5|DAZ4|ENSG00000205916.6|deleted in azoospermia 4 	ENST00000382290.3|DAZ4|ENSG00000205916.6|deleted in azoospermia 4 	ENST00000382314.2|DAZ4|ENSG00000205916.6|deleted in azoospermia 4 	ENST00000449750.2|DAZ4|ENSG00000205916.6|deleted in azoospermia 4 	ENST00000415508.2|DAZ4|ENSG00000205916.6|deleted in azoospermia 4 	ENST00000440066.2|DAZ4|ENSG00000205916.6|deleted in azoospermia 4 	ENST00000400494.3|DAZ4|ENSG00000205916.6|deleted in azoospermia 4
hg19_v2_chr14_+_99947715_99947791	0.071128	ACAGUAU	ENST00000389879.5|CCNK|ENSG00000090061.13|cyclin K 	ENST00000557441.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555049.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555842.1|CCNK|ENSG00000090061.13|cyclin K
hg19_v2_chr3_-_129407535_129407575	0.0696903	ACAGUAU	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr5_+_77656339_77656362	0.0683586	ACAGUAU	ENST00000538629.1|SCAMP1|ENSG00000085365.13|secretory carrier membrane protein 1
hg19_v2_chr5_-_171433819_171433911	0.0668907	ACAGUAU	ENST00000296933.6|FBXW11|ENSG00000072803.13|F-box and WD repeat domain containing 11
hg19_v2_chr6_-_100912785_100912822	0.0664818	ACAGUAU	ENST00000369208.3|SIM1|ENSG00000112246.5|single-minded family bHLH transcription factor 1
hg19_v2_chr3_-_88108192_88108203	0.0642178	ACAGUAU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr16_+_66400533_66400545	0.0637774	ACAGUAU	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr15_+_49715293_49715448	0.0627977	ACAGUAU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr6_+_34857019_34857117	0.0609456	ACAGUAU	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr2_+_162480845_162480890	0.0572446	ACAGUAU	ENST00000375514.5|SLC4A10|ENSG00000144290.12|solute carrier family 4, sodium bicarbonate transporter, member 10 	ENST00000415876.2|SLC4A10|ENSG00000144290.12|solute carrier family 4, sodium bicarbonate transporter, member 10
hg19_v2_chr5_-_142783175_142783297	0.0564289	ACAGUAU	ENST00000231509.3|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 	ENST00000394464.2|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
hg19_v2_chr4_+_56262115_56262140	0.0552818	ACAGUAU	ENST00000506198.1|TMEM165|ENSG00000134851.8|transmembrane protein 165 	ENST00000381334.5|TMEM165|ENSG00000134851.8|transmembrane protein 165 	ENST00000542052.1|TMEM165|ENSG00000134851.8|transmembrane protein 165
hg19_v2_chr12_-_57941004_57941114	0.0552513	ACAGUAU	ENST00000550750.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000548249.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50)
hg19_v2_chr7_-_79082867_79082900	0.0543648	ACAGUAU	ENST00000419488.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2 	ENST00000354212.4|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr14_-_101036119_101036131	0.0543367	ACAGUAU	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr2_-_160472952_160473080	0.0533739	ACAGUAU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr6_-_33168391_33168465	0.0512842	ACAGUAU	ENST00000374685.4|RXRB|ENSG00000204231.6|retinoid X receptor, beta 	ENST00000413614.2|RXRB|ENSG00000204231.6|retinoid X receptor, beta 	ENST00000374680.3|RXRB|ENSG00000204231.6|retinoid X receptor, beta
hg19_v2_chr5_-_59189545_59189625	0.0511867	ACAGUAU	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr9_+_27109133_27109187	0.0511469	ACAGUAU	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr18_+_29598335_29598428	0.0511135	ACAGUAU	ENST00000217740.3|RNF125|ENSG00000101695.4|ring finger protein 125, E3 ubiquitin protein ligase
hg19_v2_chr17_+_35294075_35294102	0.0497869	ACAGUAU	ENST00000254457.5|LHX1|ENSG00000132130.7|LIM homeobox 1
hg19_v2_chr10_+_31608054_31608156	0.0485225	ACAGUAU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr10_-_99393242_99393344	0.0472937	ACAGUAU	ENST00000370635.3|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000478953.1|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000335628.3|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr10_+_115614370_115614436	0.0471399	ACAGUAU	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr1_+_179262905_179262986	0.0453485	ACAGUAU	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr12_+_14518598_14518663	0.0440241	ACAGUAU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr2_-_37193606_37193633	0.0430265	ACAGUAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr18_+_67956135_67956144	0.0423041	ACAGUAU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr10_-_105615164_105615323	0.0412709	ACAGUAU	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr9_-_73029540_73029540	0.0383464	ACAGUAU	ENST00000377126.2|KLF9|ENSG00000119138.3|Kruppel-like factor 9
hg19_v2_chr8_-_42698433_42698486	0.036434	ACAGUAU	ENST00000345117.2|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1 	ENST00000254250.3|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1
hg19_v2_chr16_+_11762270_11762344	0.0351768	ACAGUAU	ENST00000329565.5|SNN|ENSG00000184602.5|stannin
hg19_v2_chr2_-_213403565_213403584	0.0343163	ACAGUAU	ENST00000342788.4|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 	ENST00000436443.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr8_+_67579807_67579887	0.0329893	ACAGUAU	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr1_+_176432298_176432319	0.031289	ACAGUAU	ENST00000367661.3|PAPPA2|ENSG00000116183.6|pappalysin 2 	ENST00000367662.3|PAPPA2|ENSG00000116183.6|pappalysin 2
hg19_v2_chr12_+_62860581_62860629	0.0311683	ACAGUAU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr17_+_47865917_47866068	0.0311548	ACAGUAU	ENST00000259021.4|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000454930.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000509773.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000510819.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000424009.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7
hg19_v2_chr2_+_46926048_46926095	0.027974	ACAGUAU	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr12_-_21927736_21927768	0.0268727	ACAGUAU	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr12_+_56401268_56401443	0.0265729	ACAGUAU	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr1_+_63063152_63063163	0.0263415	ACAGUAU	ENST00000371129.3|ANGPTL3|ENSG00000132855.4|angiopoietin-like 3
hg19_v2_chr14_-_53162361_53162513	0.0263002	ACAGUAU	ENST00000395686.3|ERO1L|ENSG00000197930.8|ERO1-like (S. cerevisiae)
hg19_v2_chr1_+_183605200_183605220	0.0259544	ACAGUAU	ENST00000304685.4|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr7_+_65338230_65338293	0.0247686	ACAGUAU	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr6_-_53409890_53409927	0.0198233	ACAGUAU	ENST00000229416.6|GCLC|ENSG00000001084.6|glutamate-cysteine ligase, catalytic subunit
hg19_v2_chr8_+_133787586_133787673	0.0196137	ACAGUAU	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr1_-_243418344_243418356	0.0192716	ACAGUAU	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr22_+_19744226_19744226	0.0192051	ACAGUAU	ENST00000332710.4|TBX1|ENSG00000184058.8|T-box 1 	ENST00000329705.7|TBX1|ENSG00000184058.8|T-box 1 	ENST00000359500.3|TBX1|ENSG00000184058.8|T-box 1
hg19_v2_chr11_+_9406169_9406210	0.0191321	ACAGUAU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chrX_+_133507327_133507386	0.0173424	ACAGUAU	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr2_-_47798044_47798132	0.0167801	ACAGUAU	ENST00000327876.4|KCNK12|ENSG00000184261.4|potassium channel, subfamily K, member 12
hg19_v2_chr2_-_43453734_43453751	0.0165376	ACAGUAU	ENST00000282388.3|ZFP36L2|ENSG00000152518.5|ZFP36 ring finger protein-like 2
hg19_v2_chr15_-_48470558_48470714	0.0151017	ACAGUAU	ENST00000324324.7|MYEF2|ENSG00000104177.13|myelin expression factor 2
hg19_v2_chr1_+_244214577_244214593	0.014572	ACAGUAU	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr1_+_955448_955508	0.0119512	ACAGUAU	ENST00000379370.2|AGRN|ENSG00000188157.9|agrin
hg19_v2_chr5_+_112043186_112043225	0.0102902	ACAGUAU	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr2_-_182545603_182545603	0.0101356	ACAGUAU	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr1_-_47184723_47184736	0.00847828	ACAGUAU	ENST00000371933.3|EFCAB14|ENSG00000159658.6|EF-hand calcium binding domain 14
hg19_v2_chr2_+_198365122_198365137	0.00805141	ACAGUAU	ENST00000604458.1|HSPE1-MOB4|ENSG00000270757.1|HSPE1-MOB4 readthrough
hg19_v2_chr7_+_73442102_73442139	0.00776997	ACAGUAU	ENST00000445912.1|ELN|ENSG00000049540.12|elastin 	ENST00000252034.7|ELN|ENSG00000049540.12|elastin
hg19_v2_chr6_-_111804393_111804436	0.00560996	ACAGUAU	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr12_+_121124599_121124672	0.00484873	ACAGUAU	ENST00000228506.3|MLEC|ENSG00000110917.3|malectin
hg19_v2_chr2_+_60983361_60983418	0.00368378	ACAGUAU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr7_-_82073109_82073150	0.00180081	ACAGUAU	ENST00000356860.3|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr1_-_155532484_155532605	0.00146892	ACAGUAU	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr16_-_46723066_46723121	0.00112541	ACAGUAU	ENST00000299138.7|VPS35|ENSG00000069329.11|vacuolar protein sorting 35 homolog (S. cerevisiae)
hg19_v2_chr6_+_136172820_136172846	0.000741636	ACAGUAU	ENST00000308191.6|PDE7B|ENSG00000171408.9|phosphodiesterase 7B
hg19_v2_chr20_-_47804894_47804912	0.000623046	ACAGUAU	ENST00000371828.3|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371856.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000360426.4|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000347458.5|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000340954.7|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371802.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371792.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000437404.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1
