hg19_v2_chrY_+_15016725_15016769	1.04173	ACAUUCA	ENST00000336079.3|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr17_+_53342311_53342400	0.910591	ACAUUCA	ENST00000226067.5|HLF|ENSG00000108924.9|hepatic leukemia factor
hg19_v2_chr7_-_47621736_47621747	0.84056	ACAUUCA	ENST00000311160.9|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr1_-_92351769_92351787	0.838047	ACAUUCA	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr1_-_57045228_57045242	0.76673	ACAUUCA	ENST00000371250.3|PPAP2B|ENSG00000162407.8|phosphatidic acid phosphatase type 2B
hg19_v2_chr22_+_33197683_33197698	0.674176	ACAUUCA	ENST00000266085.6|TIMP3|ENSG00000100234.11|TIMP metallopeptidase inhibitor 3
hg19_v2_chr16_+_85646763_85646822	0.667676	ACAUUCA	ENST00000411612.1|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein 	ENST00000253458.7|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein
hg19_v2_chr2_-_218808771_218808851	0.655759	ACAUUCA	ENST00000449814.1|TNS1|ENSG00000079308.12|tensin 1 	ENST00000171887.4|TNS1|ENSG00000079308.12|tensin 1
hg19_v2_chr14_-_25519095_25519280	0.613038	ACAUUCA	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr1_-_169455169_169455241	0.611199	ACAUUCA	ENST00000367804.4|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2 	ENST00000236137.5|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2
hg19_v2_chr1_+_214161272_214161322	0.586447	ACAUUCA	ENST00000498508.2|PROX1|ENSG00000117707.11|prospero homeobox 1 	ENST00000366958.4|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr16_+_69599861_69599887	0.585706	ACAUUCA	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr2_-_64881018_64881064	0.584983	ACAUUCA	ENST00000313349.3|SERTAD2|ENSG00000179833.4|SERTA domain containing 2
hg19_v2_chr15_-_61521495_61521518	0.572913	ACAUUCA	ENST00000335670.6|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr5_-_121413974_121413986	0.569326	ACAUUCA	ENST00000231004.4|LOX|ENSG00000113083.8|lysyl oxidase
hg19_v2_chr3_+_38495333_38495422	0.554367	ACAUUCA	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr5_+_75699040_75699090	0.538447	ACAUUCA	ENST00000274364.6|IQGAP2|ENSG00000145703.11|IQ motif containing GTPase activating protein 2
hg19_v2_chr16_-_4166186_4166186	0.517339	ACAUUCA	ENST00000294016.3|ADCY9|ENSG00000162104.5|adenylate cyclase 9
hg19_v2_chr6_+_132129151_132129166	0.516386	ACAUUCA	ENST00000360971.2|ENPP1|ENSG00000197594.7|ectonucleotide pyrophosphatase/phosphodiesterase 1
hg19_v2_chr5_-_141704566_141704605	0.478611	ACAUUCA	ENST00000344120.4|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila) 	ENST00000434127.2|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila)
hg19_v2_chr3_-_129407535_129407575	0.43857	ACAUUCA	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr6_+_89790490_89790506	0.430499	ACAUUCA	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr12_-_8088871_8088932	0.426068	ACAUUCA	ENST00000075120.7|SLC2A3|ENSG00000059804.11|solute carrier family 2 (facilitated glucose transporter), member 3
hg19_v2_chr10_-_735553_735683	0.416909	ACAUUCA	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr20_+_30865429_30865480	0.410727	ACAUUCA	ENST00000375712.3|KIF3B|ENSG00000101350.6|kinesin family member 3B
hg19_v2_chr6_-_16761678_16761721	0.403843	ACAUUCA	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr21_-_28338732_28338832	0.398782	ACAUUCA	ENST00000284987.5|ADAMTS5|ENSG00000154736.5|ADAM metallopeptidase with thrombospondin type 1 motif, 5
hg19_v2_chr5_+_82767284_82767310	0.387101	ACAUUCA	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr2_-_97535708_97535843	0.382119	ACAUUCA	ENST00000305476.5|SEMA4C|ENSG00000168758.6|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
hg19_v2_chr8_+_61591337_61591393	0.3816	ACAUUCA	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr10_-_90712520_90712536	0.369585	ACAUUCA	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr8_+_26435359_26435426	0.364899	ACAUUCA	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr12_-_46766577_46766650	0.357509	ACAUUCA	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr20_+_11871371_11871428	0.356124	ACAUUCA	ENST00000254977.3|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr4_+_88896819_88896874	0.355093	ACAUUCA	ENST00000237623.7|SPP1|ENSG00000118785.9|secreted phosphoprotein 1 	ENST00000395080.3|SPP1|ENSG00000118785.9|secreted phosphoprotein 1 	ENST00000508233.1|SPP1|ENSG00000118785.9|secreted phosphoprotein 1 	ENST00000360804.4|SPP1|ENSG00000118785.9|secreted phosphoprotein 1
hg19_v2_chrX_-_20284958_20285039	0.341995	ACAUUCA	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr2_+_32502952_32503025	0.333916	ACAUUCA	ENST00000238831.4|YIPF4|ENSG00000119820.6|Yip1 domain family, member 4
hg19_v2_chr8_-_57123815_57123867	0.33161	ACAUUCA	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr16_+_15068955_15068991	0.327529	ACAUUCA	ENST00000396410.4|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000569715.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000450288.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr15_+_80696666_80696700	0.327004	ACAUUCA	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr10_+_70480963_70481010	0.323175	ACAUUCA	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr18_+_55102917_55102985	0.316531	ACAUUCA	ENST00000491143.2|ONECUT2|ENSG00000119547.5|one cut homeobox 2
hg19_v2_chr17_-_56494713_56494851	0.315706	ACAUUCA	ENST00000407977.2|RNF43|ENSG00000108375.8|ring finger protein 43
hg19_v2_chr8_-_119964434_119964445	0.30131	ACAUUCA	ENST00000297350.4|TNFRSF11B|ENSG00000164761.4|tumor necrosis factor receptor superfamily, member 11b
hg19_v2_chr3_+_186501336_186501386	0.29993	ACAUUCA	ENST00000323963.5|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2 	ENST00000440191.2|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2 	ENST00000356531.5|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2
hg19_v2_chr8_-_9008206_9008222	0.298851	ACAUUCA	ENST00000310455.3|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr17_+_28705921_28706000	0.296659	ACAUUCA	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr1_+_39456895_39456986	0.292855	ACAUUCA	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr5_-_111093406_111093458	0.284497	ACAUUCA	ENST00000379671.3|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr3_+_187930719_187930729	0.28177	ACAUUCA	ENST00000312675.4|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr2_-_69614373_69614397	0.281342	ACAUUCA	ENST00000361060.5|GFPT1|ENSG00000198380.8|glutamine--fructose-6-phosphate transaminase 1 	ENST00000357308.4|GFPT1|ENSG00000198380.8|glutamine--fructose-6-phosphate transaminase 1
hg19_v2_chrX_+_9431324_9431371	0.280747	ACAUUCA	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr20_+_35201857_35201891	0.273518	ACAUUCA	ENST00000373874.2|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr22_-_39239987_39240041	0.263982	ACAUUCA	ENST00000333039.2|NPTXR|ENSG00000221890.2|neuronal pentraxin receptor
hg19_v2_chr22_+_21771656_21771693	0.262902	ACAUUCA	ENST00000407464.2|HIC2|ENSG00000169635.5|hypermethylated in cancer 2
hg19_v2_chr1_+_40627038_40627071	0.259296	ACAUUCA	ENST00000372771.4|RLF|ENSG00000117000.8|rearranged L-myc fusion
hg19_v2_chr4_+_55095264_55095390	0.258424	ACAUUCA	ENST00000257290.5|PDGFRA|ENSG00000134853.7|platelet-derived growth factor receptor, alpha polypeptide
hg19_v2_chr20_+_30697298_30697330	0.244517	ACAUUCA	ENST00000398022.2|TM9SF4|ENSG00000101337.11|transmembrane 9 superfamily protein member 4
hg19_v2_chr9_+_470288_470336	0.240212	ACAUUCA	ENST00000382303.1|KANK1|ENSG00000107104.14|KN motif and ankyrin repeat domains 1
hg19_v2_chr2_-_26101374_26101389	0.233114	ACAUUCA	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr5_+_71403061_71403169	0.23266	ACAUUCA	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr1_+_28696111_28696130	0.230211	ACAUUCA	ENST00000373839.3|PHACTR4|ENSG00000204138.8|phosphatase and actin regulator 4
hg19_v2_chr10_+_73975742_73975830	0.227806	ACAUUCA	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr16_-_85045131_85045147	0.22759	ACAUUCA	ENST00000313732.4|ZDHHC7|ENSG00000153786.8|zinc finger, DHHC-type containing 7
hg19_v2_chr4_+_184020398_184020463	0.22518	ACAUUCA	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr9_-_130742792_130742821	0.221563	ACAUUCA	ENST00000373095.1|FAM102A|ENSG00000167106.7|family with sequence similarity 102, member A
hg19_v2_chr5_-_108745689_108745712	0.221028	ACAUUCA	ENST00000361189.2|PJA2|ENSG00000198961.5|praja ring finger 2, E3 ubiquitin protein ligase
hg19_v2_chr10_+_31608054_31608156	0.220773	ACAUUCA	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr20_-_47804894_47804912	0.21949	ACAUUCA	ENST00000371828.3|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371856.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000360426.4|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000347458.5|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000340954.7|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371802.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000371792.1|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1 	ENST00000437404.2|STAU1|ENSG00000124214.15|staufen double-stranded RNA binding protein 1
hg19_v2_chr8_-_18871159_18871201	0.21853	ACAUUCA	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr3_-_69101413_69101457	0.213964	ACAUUCA	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr16_+_2587998_2588011	0.213751	ACAUUCA	ENST00000441549.3|PDPK1|ENSG00000140992.14|3-phosphoinositide dependent protein kinase-1 	ENST00000268673.7|PDPK1|ENSG00000140992.14|3-phosphoinositide dependent protein kinase-1
hg19_v2_chr13_+_98605902_98605968	0.212806	ACAUUCA	ENST00000460070.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000481455.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000261574.5|IPO5|ENSG00000065150.14|importin 5 	ENST00000493281.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000463157.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000471898.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000489058.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000481689.1|IPO5|ENSG00000065150.14|importin 5
hg19_v2_chr16_-_73082274_73082274	0.212692	ACAUUCA	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr6_+_64345698_64345750	0.208202	ACAUUCA	ENST00000506783.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000481385.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000515594.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000494284.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000262043.3|PHF3|ENSG00000118482.7|PHD finger protein 3
hg19_v2_chr5_+_65018017_65018088	0.205461	ACAUUCA	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr11_-_46940074_46940193	0.204896	ACAUUCA	ENST00000378623.1|LRP4|ENSG00000134569.5|low density lipoprotein receptor-related protein 4 	ENST00000534404.1|LRP4|ENSG00000134569.5|low density lipoprotein receptor-related protein 4
hg19_v2_chr14_+_55738021_55738176	0.20442	ACAUUCA	ENST00000313833.4|FBXO34|ENSG00000178974.5|F-box protein 34
hg19_v2_chr5_-_1524015_1524108	0.202866	ACAUUCA	ENST00000283415.3|LPCAT1|ENSG00000153395.5|lysophosphatidylcholine acyltransferase 1
hg19_v2_chr2_-_122407097_122407163	0.202411	ACAUUCA	ENST00000409078.3|CLASP1|ENSG00000074054.13|cytoplasmic linker associated protein 1
hg19_v2_chr12_-_12419703_12419811	0.200771	ACAUUCA	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr14_+_74111578_74111730	0.200668	ACAUUCA	ENST00000554113.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000555631.2|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000553645.2|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000311089.3|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000555919.3|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000554339.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1 	ENST00000554871.1|DNAL1|ENSG00000119661.10|dynein, axonemal, light chain 1
hg19_v2_chr10_+_69644404_69644427	0.199717	ACAUUCA	ENST00000212015.6|SIRT1|ENSG00000096717.7|sirtuin 1
hg19_v2_chr20_+_5107420_5107432	0.192788	ACAUUCA	ENST00000460006.1|CDS2|ENSG00000101290.9|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
hg19_v2_chr3_+_23986748_23986761	0.192422	ACAUUCA	ENST00000312521.4|NR1D2|ENSG00000174738.8|nuclear receptor subfamily 1, group D, member 2
hg19_v2_chr7_-_156803329_156803362	0.188646	ACAUUCA	ENST00000252971.6|MNX1|ENSG00000130675.10|motor neuron and pancreas homeobox 1
hg19_v2_chr3_+_171758344_171758358	0.188642	ACAUUCA	ENST00000336824.4|FNDC3B|ENSG00000075420.8|fibronectin type III domain containing 3B 	ENST00000423424.1|FNDC3B|ENSG00000075420.8|fibronectin type III domain containing 3B
hg19_v2_chr6_-_99797522_99797572	0.187548	ACAUUCA	ENST00000389677.5|FAXC|ENSG00000146267.11|failed axon connections homolog (Drosophila)
hg19_v2_chr5_+_137801160_137801179	0.185787	ACAUUCA	ENST00000239938.4|EGR1|ENSG00000120738.7|early growth response 1
hg19_v2_chr10_+_114709999_114710031	0.18347	ACAUUCA	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr10_-_15413035_15413131	0.182748	ACAUUCA	ENST00000378116.4|FAM171A1|ENSG00000148468.12|family with sequence similarity 171, member A1 	ENST00000455654.1|FAM171A1|ENSG00000148468.12|family with sequence similarity 171, member A1
hg19_v2_chr3_-_48700310_48700348	0.182554	ACAUUCA	ENST00000164024.4|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3 	ENST00000544264.1|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3
hg19_v2_chr12_-_498620_498693	0.181238	ACAUUCA	ENST00000399788.2|KDM5A|ENSG00000073614.7|lysine (K)-specific demethylase 5A 	ENST00000382815.4|KDM5A|ENSG00000073614.7|lysine (K)-specific demethylase 5A
hg19_v2_chr11_+_108093839_108093850	0.180873	ACAUUCA	ENST00000452508.2|ATM|ENSG00000149311.13|ataxia telangiectasia mutated
hg19_v2_chr16_-_87525651_87525651	0.17872	ACAUUCA	ENST00000268616.4|ZCCHC14|ENSG00000140948.7|zinc finger, CCHC domain containing 14
hg19_v2_chr15_+_43803143_43803158	0.177235	ACAUUCA	ENST00000382031.1|MAP1A|ENSG00000166963.8|microtubule-associated protein 1A
hg19_v2_chr8_+_21915368_21915399	0.176495	ACAUUCA	ENST00000265800.5|DMTN|ENSG00000158856.13|dematin actin binding protein 	ENST00000517418.1|DMTN|ENSG00000158856.13|dematin actin binding protein
hg19_v2_chr6_-_79787902_79787958	0.17605	ACAUUCA	ENST00000275034.4|PHIP|ENSG00000146247.13|pleckstrin homology domain interacting protein
hg19_v2_chr20_+_32077880_32077951	0.175031	ACAUUCA	ENST00000342704.6|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000375279.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr10_+_89622870_89622870	0.173893	ACAUUCA	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr8_+_37594130_37594169	0.173482	ACAUUCA	ENST00000518526.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000523887.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000276461.5|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2
hg19_v2_chr5_+_145826867_145826903	0.172894	ACAUUCA	ENST00000296702.5|TCERG1|ENSG00000113649.7|transcription elongation regulator 1 	ENST00000394421.2|TCERG1|ENSG00000113649.7|transcription elongation regulator 1
hg19_v2_chr2_+_64751433_64751472	0.172769	ACAUUCA	ENST00000238856.4|AFTPH|ENSG00000119844.10|aftiphilin 	ENST00000422803.1|AFTPH|ENSG00000119844.10|aftiphilin 	ENST00000238855.7|AFTPH|ENSG00000119844.10|aftiphilin
hg19_v2_chr12_+_94542459_94542513	0.171386	ACAUUCA	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr22_-_39548627_39548692	0.170391	ACAUUCA	ENST00000216133.5|CBX7|ENSG00000100307.8|chromobox homolog 7
hg19_v2_chr9_+_110045537_110045572	0.169765	ACAUUCA	ENST00000358015.3|RAD23B|ENSG00000119318.8|RAD23 homolog B (S. cerevisiae)
hg19_v2_chr6_+_15246501_15246527	0.163199	ACAUUCA	ENST00000341776.2|JARID2|ENSG00000008083.9|jumonji, AT rich interactive domain 2
hg19_v2_chr1_-_72748417_72748510	0.161023	ACAUUCA	ENST00000357731.5|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr11_-_18656028_18656040	0.160997	ACAUUCA	ENST00000336349.5|SPTY2D1|ENSG00000179119.10|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
hg19_v2_chr11_+_47291193_47291267	0.160748	ACAUUCA	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr15_+_41952591_41952672	0.157496	ACAUUCA	ENST00000566718.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000219905.7|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000389936.4|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000545763.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein
hg19_v2_chr12_+_6898638_6898669	0.150986	ACAUUCA	ENST00000011653.4|CD4|ENSG00000010610.5|CD4 molecule
hg19_v2_chr12_+_104324112_104324196	0.150195	ACAUUCA	ENST00000299767.5|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr9_+_36036430_36036430	0.149374	ACAUUCA	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr4_+_38665810_38665827	0.145289	ACAUUCA	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr8_+_86089460_86089483	0.144646	ACAUUCA	ENST00000418930.2|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr3_+_53195136_53195240	0.144537	ACAUUCA	ENST00000394729.2|PRKCD|ENSG00000163932.9|protein kinase C, delta 	ENST00000330452.3|PRKCD|ENSG00000163932.9|protein kinase C, delta
hg19_v2_chr20_+_60718785_60718853	0.143175	ACAUUCA	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr17_+_43971643_43971748	0.142113	ACAUUCA	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr5_-_78809950_78810040	0.141537	ACAUUCA	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr3_-_179169330_179169384	0.141199	ACAUUCA	ENST00000232564.3|GNB4|ENSG00000114450.5|guanine nucleotide binding protein (G protein), beta polypeptide 4
hg19_v2_chr4_-_120550146_120550201	0.141117	ACAUUCA	ENST00000354960.3|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr8_-_71316021_71316068	0.138709	ACAUUCA	ENST00000452400.2|NCOA2|ENSG00000140396.8|nuclear receptor coactivator 2
hg19_v2_chr6_+_87865262_87865339	0.137653	ACAUUCA	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr15_+_45879321_45879438	0.136769	ACAUUCA	ENST00000220531.3|BLOC1S6|ENSG00000104164.6|biogenesis of lysosomal organelles complex-1, subunit 6, pallidin 	ENST00000567461.1|BLOC1S6|ENSG00000104164.6|biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
hg19_v2_chr17_-_13505219_13505299	0.134961	ACAUUCA	ENST00000284110.1|HS3ST3A1|ENSG00000153976.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
hg19_v2_chr3_-_142166904_142166916	0.132312	ACAUUCA	ENST00000264951.4|XRN1|ENSG00000114127.6|5'-3' exoribonuclease 1
hg19_v2_chr1_+_24829384_24829443	0.131418	ACAUUCA	ENST00000374395.4|RCAN3|ENSG00000117602.7|RCAN family member 3 	ENST00000436717.2|RCAN3|ENSG00000117602.7|RCAN family member 3
hg19_v2_chr9_+_91933407_91933458	0.131343	ACAUUCA	ENST00000375807.3|SECISBP2|ENSG00000187742.10|SECIS binding protein 2 	ENST00000339901.4|SECISBP2|ENSG00000187742.10|SECIS binding protein 2
hg19_v2_chr17_+_73452545_73452685	0.130662	ACAUUCA	ENST00000314256.7|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chr2_-_39348137_39348212	0.130525	ACAUUCA	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr19_-_5978090_5978129	0.128632	ACAUUCA	ENST00000592621.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000034275.8|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591092.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591333.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000590623.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000439268.2|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000587159.1|RANBP3|ENSG00000031823.10|RAN binding protein 3
hg19_v2_chr5_+_79331164_79331177	0.12829	ACAUUCA	ENST00000350881.2|THBS4|ENSG00000113296.10|thrombospondin 4
hg19_v2_chr1_+_32930647_32930684	0.128003	ACAUUCA	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr12_+_862089_862343	0.124718	ACAUUCA	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chr6_+_10556215_10556240	0.123949	ACAUUCA	ENST00000316170.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr14_+_105781048_105781101	0.123154	ACAUUCA	ENST00000458164.2|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2 	ENST00000447393.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chrX_+_146993449_146993498	0.12238	ACAUUCA	ENST00000218200.8|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370471.3|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370477.1|FMR1|ENSG00000102081.9|fragile X mental retardation 1
hg19_v2_chr7_+_12250886_12250933	0.121969	ACAUUCA	ENST00000444443.1|TMEM106B|ENSG00000106460.14|transmembrane protein 106B 	ENST00000396667.3|TMEM106B|ENSG00000106460.14|transmembrane protein 106B
hg19_v2_chr17_-_66287257_66287276	0.121004	ACAUUCA	ENST00000327268.4|SLC16A6|ENSG00000108932.7|solute carrier family 16, member 6
hg19_v2_chr11_+_12695944_12695989	0.120692	ACAUUCA	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr10_+_52751010_52751118	0.120542	ACAUUCA	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr5_+_109025067_109025146	0.120039	ACAUUCA	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chrX_+_46306624_46306709	0.119912	ACAUUCA	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr18_-_12377283_12377313	0.119866	ACAUUCA	ENST00000269143.3|AFG3L2|ENSG00000141385.5|AFG3-like AAA ATPase 2
hg19_v2_chr2_-_68479614_68479685	0.119686	ACAUUCA	ENST00000234310.3|PPP3R1|ENSG00000221823.6|protein phosphatase 3, regulatory subunit B, alpha
hg19_v2_chr3_+_37903432_37903475	0.119559	ACAUUCA	ENST00000443503.2|CTDSPL|ENSG00000144677.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
hg19_v2_chr1_+_182992545_182992630	0.118655	ACAUUCA	ENST00000258341.4|LAMC1|ENSG00000135862.5|laminin, gamma 1 (formerly LAMB2)
hg19_v2_chr17_-_57970074_57970117	0.118465	ACAUUCA	ENST00000346141.6|TUBD1|ENSG00000108423.10|tubulin, delta 1
hg19_v2_chr7_+_4721885_4721945	0.117578	ACAUUCA	ENST00000328914.4|FOXK1|ENSG00000164916.9|forkhead box K1
hg19_v2_chr11_+_125034586_125034604	0.117378	ACAUUCA	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr10_+_104678032_104678094	0.116385	ACAUUCA	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr3_-_138553594_138553684	0.116051	ACAUUCA	ENST00000477593.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 	ENST00000483968.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
hg19_v2_chr6_-_154831779_154831801	0.115782	ACAUUCA	ENST00000607772.1|CNKSR3|ENSG00000153721.13|CNKSR family member 3
hg19_v2_chr1_+_90286562_90286617	0.115729	ACAUUCA	ENST00000525774.1|LRRC8D|ENSG00000171492.10|leucine rich repeat containing 8 family, member D 	ENST00000337338.5|LRRC8D|ENSG00000171492.10|leucine rich repeat containing 8 family, member D
hg19_v2_chr3_-_114790179_114790222	0.115478	ACAUUCA	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr13_-_39612176_39612258	0.115338	ACAUUCA	ENST00000352251.3|PROSER1|ENSG00000120685.15|proline and serine rich 1 	ENST00000350125.3|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr12_+_102271129_102271164	0.114992	ACAUUCA	ENST00000258534.8|DRAM1|ENSG00000136048.9|DNA-damage regulated autophagy modulator 1
hg19_v2_chr5_-_168006591_168006638	0.11472	ACAUUCA	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr22_-_50217981_50217981	0.113848	ACAUUCA	ENST00000457780.2|BRD1|ENSG00000100425.14|bromodomain containing 1
hg19_v2_chr2_-_176032843_176032941	0.112344	ACAUUCA	ENST00000392544.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409499.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000426833.3|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000392543.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000538946.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000487334.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409833.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409635.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000264110.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000345739.5|ATF2|ENSG00000115966.12|activating transcription factor 2
hg19_v2_chr1_-_225840747_225840860	0.111672	ACAUUCA	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr11_-_30038490_30038590	0.111499	ACAUUCA	ENST00000328224.6|KCNA4|ENSG00000182255.6|potassium voltage-gated channel, shaker-related subfamily, member 4
hg19_v2_chr2_+_148602058_148602185	0.109846	ACAUUCA	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr3_+_5020801_5020952	0.109759	ACAUUCA	ENST00000256495.3|BHLHE40|ENSG00000134107.4|basic helix-loop-helix family, member e40
hg19_v2_chr5_-_98262240_98262240	0.108928	ACAUUCA	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr5_+_52083730_52083821	0.108898	ACAUUCA	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr3_-_195270162_195270209	0.108612	ACAUUCA	ENST00000438848.1|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2 	ENST00000328432.3|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2
hg19_v2_chr3_+_154797428_154797450	0.10745	ACAUUCA	ENST00000460393.1|MME|ENSG00000196549.6|membrane metallo-endopeptidase
hg19_v2_chr12_-_66524482_66524548	0.1065	ACAUUCA	ENST00000446587.2|LLPH|ENSG00000139233.2|LLP homolog, long-term synaptic facilitation (Aplysia) 	ENST00000266604.2|LLPH|ENSG00000139233.2|LLP homolog, long-term synaptic facilitation (Aplysia)
hg19_v2_chr1_+_114472222_114472377	0.106126	ACAUUCA	ENST00000369558.1|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369561.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr6_-_136610911_136610990	0.105943	ACAUUCA	ENST00000530767.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000527759.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000527536.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000529826.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000531224.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000353331.4|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1
hg19_v2_chr4_+_1795012_1795039	0.105922	ACAUUCA	ENST00000481110.2|FGFR3|ENSG00000068078.13|fibroblast growth factor receptor 3 	ENST00000340107.4|FGFR3|ENSG00000068078.13|fibroblast growth factor receptor 3 	ENST00000440486.2|FGFR3|ENSG00000068078.13|fibroblast growth factor receptor 3 	ENST00000412135.2|FGFR3|ENSG00000068078.13|fibroblast growth factor receptor 3
hg19_v2_chr2_-_68694390_68694434	0.105858	ACAUUCA	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chr9_-_36400213_36400296	0.103719	ACAUUCA	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr7_+_99613195_99613206	0.102078	ACAUUCA	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr13_-_76056250_76056280	0.102016	ACAUUCA	ENST00000377636.3|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000431480.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000377625.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000425511.1|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4
hg19_v2_chr6_-_99873145_99873207	0.0985178	ACAUUCA	ENST00000369239.5|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein 	ENST00000438806.1|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein
hg19_v2_chr12_-_8025442_8025459	0.0978444	ACAUUCA	ENST00000340749.5|SLC2A14|ENSG00000173262.7|solute carrier family 2 (facilitated glucose transporter), member 14 	ENST00000535295.1|SLC2A14|ENSG00000173262.7|solute carrier family 2 (facilitated glucose transporter), member 14 	ENST00000539234.1|SLC2A14|ENSG00000173262.7|solute carrier family 2 (facilitated glucose transporter), member 14
hg19_v2_chr1_+_97187318_97187380	0.0975383	ACAUUCA	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr5_+_36876833_36876894	0.0975373	ACAUUCA	ENST00000282516.8|NIPBL|ENSG00000164190.12|Nipped-B homolog (Drosophila) 	ENST00000448238.2|NIPBL|ENSG00000164190.12|Nipped-B homolog (Drosophila)
hg19_v2_chr5_-_65017921_65017968	0.0972204	ACAUUCA	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr8_-_67525473_67525518	0.0968345	ACAUUCA	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr1_+_93544791_93544807	0.0956016	ACAUUCA	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr6_+_36853607_36853640	0.0942524	ACAUUCA	ENST00000480824.2|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89 	ENST00000355190.3|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89 	ENST00000373685.1|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89
hg19_v2_chr13_-_28545276_28545276	0.0938224	ACAUUCA	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chrX_-_134049262_134049297	0.093785	ACAUUCA	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr16_-_58663720_58663790	0.0934652	ACAUUCA	ENST00000564557.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000569240.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000441024.2|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000569020.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000317147.5|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1
hg19_v2_chr2_+_228336849_228336904	0.093014	ACAUUCA	ENST00000409979.2|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000310078.8|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr10_-_98346801_98346812	0.0922344	ACAUUCA	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr15_-_49447835_49447858	0.0908853	ACAUUCA	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr2_-_47798044_47798132	0.0867206	ACAUUCA	ENST00000327876.4|KCNK12|ENSG00000184261.4|potassium channel, subfamily K, member 12
hg19_v2_chr9_-_104145795_104145806	0.0864093	ACAUUCA	ENST00000259407.2|BAAT|ENSG00000136881.7|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)
hg19_v2_chr2_+_86947296_86947434	0.0863492	ACAUUCA	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr17_+_42148097_42148119	0.085092	ACAUUCA	ENST00000269097.4|G6PC3|ENSG00000141349.4|glucose 6 phosphatase, catalytic, 3
hg19_v2_chr10_-_11653753_11653806	0.0846224	ACAUUCA	ENST00000609104.1|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr19_+_10982189_10982272	0.084274	ACAUUCA	ENST00000327064.4|CARM1|ENSG00000142453.7|coactivator-associated arginine methyltransferase 1 	ENST00000588947.1|CARM1|ENSG00000142453.7|coactivator-associated arginine methyltransferase 1
hg19_v2_chr2_+_64681219_64681231	0.0827704	ACAUUCA	ENST00000238875.5|LGALSL|ENSG00000119862.8|lectin, galactoside-binding-like
hg19_v2_chr3_-_53080047_53080103	0.0821086	ACAUUCA	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr9_+_129567282_129567353	0.0820104	ACAUUCA	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr2_-_45236540_45236577	0.0816219	ACAUUCA	ENST00000303077.6|SIX2|ENSG00000170577.7|SIX homeobox 2
hg19_v2_chr12_-_124457371_124457387	0.0806664	ACAUUCA	ENST00000238156.3|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92 	ENST00000545037.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92
hg19_v2_chr7_-_81399438_81399514	0.0800142	ACAUUCA	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr7_+_65338230_65338293	0.0799101	ACAUUCA	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr14_+_75745477_75745680	0.0798793	ACAUUCA	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr17_+_45608430_45608490	0.078454	ACAUUCA	ENST00000322157.4|NPEPPS|ENSG00000141279.11|aminopeptidase puromycin sensitive
hg19_v2_chr9_+_96338860_96338939	0.0778256	ACAUUCA	ENST00000375376.4|PHF2|ENSG00000197724.6|PHD finger protein 2
hg19_v2_chr2_+_36582857_36583069	0.0773256	ACAUUCA	ENST00000280527.2|CRIM1|ENSG00000150938.5|cysteine rich transmembrane BMP regulator 1 (chordin-like)
hg19_v2_chr12_+_70132632_70132687	0.0772205	ACAUUCA	ENST00000378815.6|RAB3IP|ENSG00000127328.17|RAB3A interacting protein 	ENST00000483530.2|RAB3IP|ENSG00000127328.17|RAB3A interacting protein 	ENST00000325555.9|RAB3IP|ENSG00000127328.17|RAB3A interacting protein
hg19_v2_chr12_+_11802753_11802834	0.075985	ACAUUCA	ENST00000396373.4|ETV6|ENSG00000139083.6|ets variant 6
hg19_v2_chr1_-_225615599_225615802	0.0757177	ACAUUCA	ENST00000421383.1|LBR|ENSG00000143815.10|lamin B receptor 	ENST00000272163.4|LBR|ENSG00000143815.10|lamin B receptor
hg19_v2_chr12_-_76953284_76953341	0.0727885	ACAUUCA	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr2_-_50574856_50574892	0.0724448	ACAUUCA	ENST00000342183.5|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr1_-_31538517_31538632	0.0723962	ACAUUCA	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr3_-_105587879_105587892	0.0719311	ACAUUCA	ENST00000264122.4|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000403724.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000405772.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr9_-_91793675_91793698	0.0716332	ACAUUCA	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chrX_+_70752917_70752933	0.0714173	ACAUUCA	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr5_+_140261703_140261854	0.0714108	ACAUUCA	ENST00000409494.1|PCDHA13|ENSG00000239389.3|protocadherin alpha 13 	ENST00000289272.2|PCDHA13|ENSG00000239389.3|protocadherin alpha 13
hg19_v2_chr7_-_123389104_123389161	0.0704982	ACAUUCA	ENST00000223023.4|WASL|ENSG00000106299.7|Wiskott-Aldrich syndrome-like
hg19_v2_chr11_-_77532050_77532066	0.0704407	ACAUUCA	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr14_-_21493884_21494007	0.0703675	ACAUUCA	ENST00000556974.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554419.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000298687.5|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397858.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000360463.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000350792.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397847.2|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr14_-_92572894_92572965	0.070103	ACAUUCA	ENST00000532032.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000506466.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000555381.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000557311.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000554592.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000554672.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000553491.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000556220.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000502250.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000503767.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000393287.5|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000340660.6|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000545170.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000429774.2|ATXN3|ENSG00000066427.17|ataxin 3
hg19_v2_chr3_-_11762202_11762226	0.0694978	ACAUUCA	ENST00000445411.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000404339.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000273038.3|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr13_+_49550015_49550070	0.0692892	ACAUUCA	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr5_+_172483347_172483407	0.0691198	ACAUUCA	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr11_-_74109422_74109518	0.0690077	ACAUUCA	ENST00000298198.4|PGM2L1|ENSG00000165434.6|phosphoglucomutase 2-like 1
hg19_v2_chr12_-_57030115_57030177	0.0683801	ACAUUCA	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr17_+_65821780_65821826	0.0677587	ACAUUCA	ENST00000321892.4|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor 	ENST00000335221.5|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor 	ENST00000306378.6|BPTF|ENSG00000171634.12|bromodomain PHD finger transcription factor
hg19_v2_chr2_+_177053307_177053402	0.0677093	ACAUUCA	ENST00000331462.4|HOXD1|ENSG00000128645.11|homeobox D1
hg19_v2_chr11_+_32914579_32914724	0.0672463	ACAUUCA	ENST00000399302.2|QSER1|ENSG00000060749.10|glutamine and serine rich 1
hg19_v2_chr10_-_43133950_43133994	0.0672397	ACAUUCA	ENST00000359467.3|ZNF33B|ENSG00000196693.10|zinc finger protein 33B
hg19_v2_chr1_+_183441600_183441616	0.0670597	ACAUUCA	ENST00000367537.3|SMG7|ENSG00000116698.16|SMG7 nonsense mediated mRNA decay factor
hg19_v2_chr2_-_96931679_96931756	0.0669544	ACAUUCA	ENST00000258439.3|TMEM127|ENSG00000135956.4|transmembrane protein 127 	ENST00000432959.1|TMEM127|ENSG00000135956.4|transmembrane protein 127
hg19_v2_chr5_+_140207536_140207650	0.066898	ACAUUCA	ENST00000529310.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6 	ENST00000527624.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6
hg19_v2_chr5_+_140201183_140201361	0.0668589	ACAUUCA	ENST00000529619.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000529859.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000378126.3|PCDHA5|ENSG00000204965.4|protocadherin alpha 5
hg19_v2_chr1_+_87380299_87380475	0.0661876	ACAUUCA	ENST00000370551.4|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1 	ENST00000370550.5|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1
hg19_v2_chr12_-_90049828_90049847	0.0656426	ACAUUCA	ENST00000261173.2|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1 	ENST00000348959.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr11_-_61684962_61685063	0.0656415	ACAUUCA	ENST00000394836.2|RAB3IL1|ENSG00000167994.7|RAB3A interacting protein (rabin3)-like 1
hg19_v2_chr18_+_46065393_46065444	0.0654662	ACAUUCA	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr12_+_120884222_120884380	0.0651797	ACAUUCA	ENST00000551765.1|GATC|ENSG00000257218.1|glutamyl-tRNA(Gln) amidotransferase, subunit C 	ENST00000229384.5|GATC|ENSG00000257218.1|glutamyl-tRNA(Gln) amidotransferase, subunit C
hg19_v2_chr7_+_66205712_66205726	0.0648628	ACAUUCA	ENST00000451741.2|KCTD7|ENSG00000243335.4|potassium channel tetramerization domain containing 7 	ENST00000442563.1|RABGEF1|ENSG00000154710.11|RAB guanine nucleotide exchange factor (GEF) 1 	ENST00000450873.2|RABGEF1|ENSG00000154710.11|RAB guanine nucleotide exchange factor (GEF) 1 	ENST00000284957.5|RABGEF1|ENSG00000154710.11|RAB guanine nucleotide exchange factor (GEF) 1
hg19_v2_chr17_+_25799008_25799036	0.0635972	ACAUUCA	ENST00000583370.1|KSR1|ENSG00000141068.9|kinase suppressor of ras 1 	ENST00000398988.3|KSR1|ENSG00000141068.9|kinase suppressor of ras 1 	ENST00000268763.6|KSR1|ENSG00000141068.9|kinase suppressor of ras 1
hg19_v2_chr1_-_211307315_211307357	0.0605535	ACAUUCA	ENST00000271751.4|KCNH1|ENSG00000143473.7|potassium voltage-gated channel, subfamily H (eag-related), member 1
hg19_v2_chr6_+_71377473_71377520	0.0596114	ACAUUCA	ENST00000370452.3|SMAP1|ENSG00000112305.10|small ArfGAP 1 	ENST00000316999.5|SMAP1|ENSG00000112305.10|small ArfGAP 1 	ENST00000370455.3|SMAP1|ENSG00000112305.10|small ArfGAP 1
hg19_v2_chr1_+_167190066_167190156	0.0590691	ACAUUCA	ENST00000367866.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000429375.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000452019.1|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000420254.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000541643.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr16_+_50775948_50775961	0.0590677	ACAUUCA	ENST00000569681.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000569418.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000540145.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome)
hg19_v2_chr8_+_120885949_120885976	0.0590614	ACAUUCA	ENST00000523492.1|DEPTOR|ENSG00000155792.5|DEP domain containing MTOR-interacting protein 	ENST00000286234.5|DEPTOR|ENSG00000155792.5|DEP domain containing MTOR-interacting protein
hg19_v2_chr5_+_102455853_102455961	0.0576824	ACAUUCA	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr4_+_113152881_113152912	0.0576791	ACAUUCA	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr2_-_202316260_202316308	0.056289	ACAUUCA	ENST00000332624.3|TRAK2|ENSG00000115993.7|trafficking protein, kinesin binding 2
hg19_v2_chr11_+_107879459_107879702	0.0559335	ACAUUCA	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr9_+_103204553_103204560	0.0555276	ACAUUCA	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough 	ENST00000334943.6|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr16_-_71843047_71843104	0.055194	ACAUUCA	ENST00000299980.4|AP1G1|ENSG00000166747.8|adaptor-related protein complex 1, gamma 1 subunit 	ENST00000393512.3|AP1G1|ENSG00000166747.8|adaptor-related protein complex 1, gamma 1 subunit
hg19_v2_chr4_-_129208940_129208976	0.0551699	ACAUUCA	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr6_-_100912785_100912822	0.0550994	ACAUUCA	ENST00000369208.3|SIM1|ENSG00000112246.5|single-minded family bHLH transcription factor 1
hg19_v2_chr4_+_37892682_37892757	0.0545749	ACAUUCA	ENST00000508802.1|TBC1D1|ENSG00000065882.11|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 	ENST00000261439.4|TBC1D1|ENSG00000065882.11|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 	ENST00000402522.1|TBC1D1|ENSG00000065882.11|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
hg19_v2_chr13_+_97874574_97874609	0.0543675	ACAUUCA	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr1_+_154300217_154300276	0.0540284	ACAUUCA	ENST00000368489.3|ATP8B2|ENSG00000143515.12|ATPase, aminophospholipid transporter, class I, type 8B, member 2
hg19_v2_chr5_-_142783175_142783297	0.0539477	ACAUUCA	ENST00000231509.3|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 	ENST00000394464.2|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
hg19_v2_chr1_-_179846928_179846946	0.0529694	ACAUUCA	ENST00000367612.3|TOR1AIP2|ENSG00000169905.8|torsin A interacting protein 2 	ENST00000609928.1|TOR1AIP2|ENSG00000169905.8|torsin A interacting protein 2
hg19_v2_chr8_-_117886955_117887105	0.0524028	ACAUUCA	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr8_-_119124045_119124097	0.0520792	ACAUUCA	ENST00000378204.2|EXT1|ENSG00000182197.6|exostosin glycosyltransferase 1
hg19_v2_chr9_-_127905736_127905815	0.0516806	ACAUUCA	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr5_-_131132658_131132719	0.0503198	ACAUUCA	ENST00000514667.1|CTC-432M15.3|ENSG00000273217.1|Folliculin-interacting protein 1  	ENST00000511848.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000510461.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr20_+_48429356_48429458	0.0502489	ACAUUCA	ENST00000361573.2|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 	ENST00000541138.1|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 	ENST00000539601.1|SLC9A8|ENSG00000197818.7|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8
hg19_v2_chr5_-_137090028_137090075	0.0494567	ACAUUCA	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr20_-_60640866_60640901	0.0493191	ACAUUCA	ENST00000252996.4|TAF4|ENSG00000130699.12|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
hg19_v2_chr4_+_7045042_7045262	0.0489594	ACAUUCA	ENST00000310074.7|TADA2B|ENSG00000173011.11|transcriptional adaptor 2B 	ENST00000512388.1|TADA2B|ENSG00000173011.11|transcriptional adaptor 2B
hg19_v2_chr10_+_134351319_134351353	0.0488798	ACAUUCA	ENST00000368594.3|INPP5A|ENSG00000068383.14|inositol polyphosphate-5-phosphatase, 40kDa 	ENST00000368593.3|INPP5A|ENSG00000068383.14|inositol polyphosphate-5-phosphatase, 40kDa
hg19_v2_chr2_-_10952922_10952970	0.048434	ACAUUCA	ENST00000272227.3|PDIA6|ENSG00000143870.8|protein disulfide isomerase family A, member 6
hg19_v2_chr11_-_8285405_8285426	0.0481232	ACAUUCA	ENST00000335790.3|LMO1|ENSG00000166407.9|LIM domain only 1 (rhombotin 1) 	ENST00000534484.1|LMO1|ENSG00000166407.9|LIM domain only 1 (rhombotin 1)
hg19_v2_chr7_+_100770328_100770393	0.047926	ACAUUCA	ENST00000223095.4|SERPINE1|ENSG00000106366.7|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 	ENST00000445463.2|SERPINE1|ENSG00000106366.7|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
hg19_v2_chr8_-_59572301_59572435	0.0476859	ACAUUCA	ENST00000038176.3|NSMAF|ENSG00000035681.3|neutral sphingomyelinase (N-SMase) activation associated factor
hg19_v2_chr11_+_118307179_118307228	0.047531	ACAUUCA	ENST00000534358.1|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000531904.2|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000389506.5|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000354520.4|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A
hg19_v2_chr1_-_84464780_84464862	0.0473742	ACAUUCA	ENST00000260505.8|TTLL7|ENSG00000137941.12|tubulin tyrosine ligase-like family, member 7
hg19_v2_chr11_-_82782861_82782949	0.0469699	ACAUUCA	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr4_-_69215699_69215815	0.0461559	ACAUUCA	ENST00000510746.1|YTHDC1|ENSG00000083896.8|YTH domain containing 1 	ENST00000344157.4|YTHDC1|ENSG00000083896.8|YTH domain containing 1 	ENST00000355665.3|YTHDC1|ENSG00000083896.8|YTH domain containing 1
hg19_v2_chr3_-_98312548_98312567	0.0457096	ACAUUCA	ENST00000264193.2|CPOX|ENSG00000080819.2|coproporphyrinogen oxidase
hg19_v2_chr1_+_202317815_202317854	0.0444092	ACAUUCA	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr15_+_50716576_50716624	0.043965	ACAUUCA	ENST00000560297.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000307179.4|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000396444.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000433963.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000425032.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8
hg19_v2_chr2_+_191513959_191514047	0.0412619	ACAUUCA	ENST00000337386.5|NAB1|ENSG00000138386.12|NGFI-A binding protein 1 (EGR1 binding protein 1) 	ENST00000357215.5|NAB1|ENSG00000138386.12|NGFI-A binding protein 1 (EGR1 binding protein 1)
hg19_v2_chr4_-_41750922_41750987	0.0411213	ACAUUCA	ENST00000226382.2|PHOX2B|ENSG00000109132.5|paired-like homeobox 2b
hg19_v2_chr8_-_23712312_23712328	0.0410575	ACAUUCA	ENST00000290271.2|STC1|ENSG00000159167.7|stanniocalcin 1
hg19_v2_chr3_-_182698381_182698431	0.0404475	ACAUUCA	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr7_-_37956409_37956517	0.0397711	ACAUUCA	ENST00000436072.2|SFRP4|ENSG00000106483.7|secreted frizzled-related protein 4
hg19_v2_chr2_+_28974668_28974729	0.0384427	ACAUUCA	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr2_-_201936302_201936416	0.0379476	ACAUUCA	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr19_-_38146289_38146401	0.0376599	ACAUUCA	ENST00000392144.1|ZFP30|ENSG00000120784.11|ZFP30 zinc finger protein 	ENST00000591444.1|ZFP30|ENSG00000120784.11|ZFP30 zinc finger protein 	ENST00000351218.2|ZFP30|ENSG00000120784.11|ZFP30 zinc finger protein 	ENST00000587809.1|ZFP30|ENSG00000120784.11|ZFP30 zinc finger protein
hg19_v2_chr11_+_57520715_57520776	0.0370527	ACAUUCA	ENST00000524630.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000529919.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000399039.4|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000533189.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1
hg19_v2_chr12_-_80084862_80084884	0.0369621	ACAUUCA	ENST00000328827.4|PAWR|ENSG00000177425.6|PRKC, apoptosis, WT1, regulator
hg19_v2_chr12_+_60083118_60083157	0.0366859	ACAUUCA	ENST00000261187.4|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000543448.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr6_-_28367510_28367537	0.0365118	ACAUUCA	ENST00000361028.1|ZSCAN12|ENSG00000158691.10|zinc finger and SCAN domain containing 12
hg19_v2_chr4_-_100867864_100867889	0.0363938	ACAUUCA	ENST00000442697.2|DNAJB14|ENSG00000164031.12|DnaJ (Hsp40) homolog, subfamily B, member 14
hg19_v2_chrY_+_14813160_14813160	0.0357102	ACAUUCA	ENST00000338981.3|USP9Y|ENSG00000114374.8|ubiquitin specific peptidase 9, Y-linked
hg19_v2_chr1_-_205719295_205719404	0.0355821	ACAUUCA	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr10_-_61666267_61666414	0.0352309	ACAUUCA	ENST00000263102.6|CCDC6|ENSG00000108091.10|coiled-coil domain containing 6
hg19_v2_chr5_+_34929677_34929789	0.0352067	ACAUUCA	ENST00000342382.4|DNAJC21|ENSG00000168724.10|DnaJ (Hsp40) homolog, subfamily C, member 21 	ENST00000382021.2|DNAJC21|ENSG00000168724.10|DnaJ (Hsp40) homolog, subfamily C, member 21 	ENST00000303525.7|DNAJC21|ENSG00000168724.10|DnaJ (Hsp40) homolog, subfamily C, member 21
hg19_v2_chr4_-_17513702_17513720	0.0350791	ACAUUCA	ENST00000428702.2|QDPR|ENSG00000151552.7|quinoid dihydropteridine reductase 	ENST00000508623.1|QDPR|ENSG00000151552.7|quinoid dihydropteridine reductase 	ENST00000513615.1|QDPR|ENSG00000151552.7|quinoid dihydropteridine reductase
hg19_v2_chr10_+_20105157_20105184	0.0343687	ACAUUCA	ENST00000377242.3|PLXDC2|ENSG00000120594.12|plexin domain containing 2 	ENST00000377252.4|PLXDC2|ENSG00000120594.12|plexin domain containing 2
hg19_v2_chr3_-_101039402_101039429	0.0342327	ACAUUCA	ENST00000193391.7|IMPG2|ENSG00000081148.11|interphotoreceptor matrix proteoglycan 2
hg19_v2_chr17_+_57297807_57297923	0.0341779	ACAUUCA	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr12_-_101801505_101801598	0.0337575	ACAUUCA	ENST00000539055.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000551688.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000551671.1|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1 	ENST00000261636.8|ARL1|ENSG00000120805.9|ADP-ribosylation factor-like 1
hg19_v2_chr14_-_95786200_95786257	0.0333567	ACAUUCA	ENST00000298912.4|CLMN|ENSG00000165959.7|calmin (calponin-like, transmembrane)
hg19_v2_chr14_-_53162361_53162513	0.0332272	ACAUUCA	ENST00000395686.3|ERO1L|ENSG00000197930.8|ERO1-like (S. cerevisiae)
hg19_v2_chr5_+_161274685_161274747	0.0331965	ACAUUCA	ENST00000428797.2|GABRA1|ENSG00000022355.10|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v2_chr9_-_37034028_37034157	0.0331509	ACAUUCA	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr10_+_97803151_97803348	0.0329712	ACAUUCA	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr8_+_64081118_64081131	0.0328479	ACAUUCA	ENST00000539294.1|YTHDF3|ENSG00000185728.12|YTH domain family, member 3
hg19_v2_chr15_-_78369994_78370069	0.0327996	ACAUUCA	ENST00000300584.3|TBC1D2B|ENSG00000167202.7|TBC1 domain family, member 2B 	ENST00000409931.3|TBC1D2B|ENSG00000167202.7|TBC1 domain family, member 2B
hg19_v2_chr6_+_163835669_163835693	0.0327984	ACAUUCA	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr17_-_49198216_49198236	0.0326961	ACAUUCA	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chrX_+_24711997_24712075	0.0325399	ACAUUCA	ENST00000379068.3|POLA1|ENSG00000101868.6|polymerase (DNA directed), alpha 1, catalytic subunit 	ENST00000379059.3|POLA1|ENSG00000101868.6|polymerase (DNA directed), alpha 1, catalytic subunit
hg19_v2_chr19_-_36870087_36870110	0.0320799	ACAUUCA	ENST00000270001.7|ZFP14|ENSG00000142065.9|ZFP14 zinc finger protein
hg19_v2_chr17_-_3461092_3461126	0.0319051	ACAUUCA	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr17_-_77813186_77813249	0.0306954	ACAUUCA	ENST00000448310.1|CBX4|ENSG00000141582.10|chromobox homolog 4 	ENST00000269397.4|CBX4|ENSG00000141582.10|chromobox homolog 4
hg19_v2_chr1_-_19578003_19578046	0.0292894	ACAUUCA	ENST00000375199.3|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1 	ENST00000375208.3|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1 	ENST00000356068.2|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1 	ENST00000477853.1|EMC1|ENSG00000127463.9|ER membrane protein complex subunit 1
hg19_v2_chr7_+_155250824_155250824	0.0288355	ACAUUCA	ENST00000297375.4|EN2|ENSG00000164778.4|engrailed homeobox 2
hg19_v2_chr22_-_19109901_19109967	0.0280455	ACAUUCA	ENST00000545799.1|DGCR2|ENSG00000070413.14|DiGeorge syndrome critical region gene 2 	ENST00000537045.1|DGCR2|ENSG00000070413.14|DiGeorge syndrome critical region gene 2 	ENST00000263196.7|DGCR2|ENSG00000070413.14|DiGeorge syndrome critical region gene 2
hg19_v2_chr17_-_40540377_40540481	0.0279955	ACAUUCA	ENST00000404395.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000389272.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000585517.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000588065.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr1_-_78225482_78225544	0.02799	ACAUUCA	ENST00000524778.1|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370794.3|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370793.1|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370792.3|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33
hg19_v2_chr20_+_37101455_37101520	0.0276808	ACAUUCA	ENST00000262879.6|RALGAPB|ENSG00000170471.10|Ral GTPase activating protein, beta subunit (non-catalytic) 	ENST00000397042.3|RALGAPB|ENSG00000170471.10|Ral GTPase activating protein, beta subunit (non-catalytic) 	ENST00000397038.1|RALGAPB|ENSG00000170471.10|Ral GTPase activating protein, beta subunit (non-catalytic) 	ENST00000537204.1|RALGAPB|ENSG00000170471.10|Ral GTPase activating protein, beta subunit (non-catalytic)
hg19_v2_chr22_+_24666763_24666876	0.0271151	ACAUUCA	ENST00000437398.1|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like 	ENST00000421374.1|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like 	ENST00000314328.9|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like 	ENST00000541492.1|SPECC1L|ENSG00000100014.15|sperm antigen with calponin homology and coiled-coil domains 1-like
hg19_v2_chr1_-_28415204_28415227	0.0268615	ACAUUCA	ENST00000373871.3|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr12_+_121124599_121124672	0.026559	ACAUUCA	ENST00000228506.3|MLEC|ENSG00000110917.3|malectin
hg19_v2_chr1_+_89149905_89149995	0.026392	ACAUUCA	ENST00000316005.7|PKN2|ENSG00000065243.14|protein kinase N2 	ENST00000370521.3|PKN2|ENSG00000065243.14|protein kinase N2 	ENST00000370505.3|PKN2|ENSG00000065243.14|protein kinase N2
hg19_v2_chr7_+_32535060_32535322	0.0260459	ACAUUCA	ENST00000318709.4|AVL9|ENSG00000105778.13|AVL9 homolog (S. cerevisiase) 	ENST00000409301.1|AVL9|ENSG00000105778.13|AVL9 homolog (S. cerevisiase) 	ENST00000404479.1|AVL9|ENSG00000105778.13|AVL9 homolog (S. cerevisiase)
hg19_v2_chr6_+_42531798_42531810	0.0258599	ACAUUCA	ENST00000372903.2|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372899.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372901.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chr11_+_129939779_129939801	0.0257799	ACAUUCA	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr9_+_114659046_114659102	0.0255373	ACAUUCA	ENST00000374279.3|UGCG|ENSG00000148154.5|UDP-glucose ceramide glucosyltransferase
hg19_v2_chr6_+_44355257_44355315	0.024683	ACAUUCA	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr4_-_25032501_25032592	0.0242516	ACAUUCA	ENST00000382114.4|LGI2|ENSG00000153012.7|leucine-rich repeat LGI family, member 2
hg19_v2_chr6_+_106546808_106546833	0.0241613	ACAUUCA	ENST00000369089.3|PRDM1|ENSG00000057657.10|PR domain containing 1, with ZNF domain
hg19_v2_chr5_-_174871136_174871211	0.0235847	ACAUUCA	ENST00000393752.2|DRD1|ENSG00000184845.3|dopamine receptor D1
hg19_v2_chr16_-_66785699_66785759	0.0235744	ACAUUCA	ENST00000258198.2|DYNC1LI2|ENSG00000135720.8|dynein, cytoplasmic 1, light intermediate chain 2
hg19_v2_chr3_-_195163803_195163826	0.023479	ACAUUCA	ENST00000326793.6|ACAP2|ENSG00000114331.8|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
hg19_v2_chr1_-_212004090_212004168	0.0234457	ACAUUCA	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr10_+_64564469_64564535	0.0223442	ACAUUCA	ENST00000373783.1|ADO|ENSG00000181915.3|2-aminoethanethiol (cysteamine) dioxygenase
hg19_v2_chr10_+_112631547_112631596	0.0218766	ACAUUCA	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chr11_+_118958689_118958710	0.0216211	ACAUUCA	ENST00000535253.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000392841.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase
hg19_v2_chr15_+_72766651_72766680	0.020378	ACAUUCA	ENST00000379887.4|ARIH1|ENSG00000166233.8|ariadne RBR E3 ubiquitin protein ligase 1
hg19_v2_chr9_+_112403088_112403142	0.0203704	ACAUUCA	ENST00000448454.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr5_+_10353780_10353890	0.0199896	ACAUUCA	ENST00000449913.2|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000503788.1|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000274140.5|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase
hg19_v2_chr18_+_32073253_32073339	0.0198897	ACAUUCA	ENST00000283365.9|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000596745.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000315456.6|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr8_-_74791051_74791145	0.0195957	ACAUUCA	ENST00000453587.2|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000602969.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000602593.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000419880.3|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000517608.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative)
hg19_v2_chr11_-_88796803_88796827	0.0190611	ACAUUCA	ENST00000418177.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5 	ENST00000455756.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5
hg19_v2_chr15_+_68346501_68346550	0.0189337	ACAUUCA	ENST00000249636.6|PIAS1|ENSG00000033800.9|protein inhibitor of activated STAT, 1
hg19_v2_chr11_+_70116779_70116858	0.0186758	ACAUUCA	ENST00000253925.7|PPFIA1|ENSG00000131626.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 	ENST00000389547.3|PPFIA1|ENSG00000131626.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
hg19_v2_chr8_+_1449532_1449532	0.0184824	ACAUUCA	ENST00000421627.2|DLGAP2|ENSG00000198010.7|discs, large (Drosophila) homolog-associated protein 2
hg19_v2_chr10_+_180987_181009	0.0184451	ACAUUCA	ENST00000381591.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr20_+_44509857_44509880	0.018183	ACAUUCA	ENST00000372523.1|ZSWIM1|ENSG00000168612.4|zinc finger, SWIM-type containing 1 	ENST00000372520.1|ZSWIM1|ENSG00000168612.4|zinc finger, SWIM-type containing 1
hg19_v2_chr17_+_57970469_57970600	0.0179912	ACAUUCA	ENST00000443572.2|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1 	ENST00000406116.3|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1 	ENST00000225577.4|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1 	ENST00000393021.3|RPS6KB1|ENSG00000108443.9|ribosomal protein S6 kinase, 70kDa, polypeptide 1
hg19_v2_chrX_+_24167746_24167811	0.0171107	ACAUUCA	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr12_-_65515334_65515362	0.0168739	ACAUUCA	ENST00000286574.4|WIF1|ENSG00000156076.5|WNT inhibitory factor 1
hg19_v2_chr11_+_33278811_33279133	0.0164515	ACAUUCA	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr17_-_4890919_4890985	0.016446	ACAUUCA	ENST00000572543.1|CAMTA2|ENSG00000108509.16|calmodulin binding transcription activator 2 	ENST00000381311.5|CAMTA2|ENSG00000108509.16|calmodulin binding transcription activator 2 	ENST00000348066.3|CAMTA2|ENSG00000108509.16|calmodulin binding transcription activator 2 	ENST00000358183.4|CAMTA2|ENSG00000108509.16|calmodulin binding transcription activator 2
hg19_v2_chr14_-_82000140_82000229	0.0164345	ACAUUCA	ENST00000555824.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000557372.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000336735.4|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans)
hg19_v2_chr1_+_220267429_220267510	0.0162396	ACAUUCA	ENST00000366922.1|IARS2|ENSG00000067704.8|isoleucyl-tRNA synthetase 2, mitochondrial 	ENST00000302637.5|IARS2|ENSG00000067704.8|isoleucyl-tRNA synthetase 2, mitochondrial
hg19_v2_chrX_-_153363188_153363212	0.0161392	ACAUUCA	ENST00000303391.6|MECP2|ENSG00000169057.15|methyl CpG binding protein 2 (Rett syndrome)
hg19_v2_chr11_-_33183006_33183046	0.0161365	ACAUUCA	ENST00000524827.1|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 	ENST00000323959.4|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 	ENST00000431742.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr17_-_9929581_9929626	0.0158785	ACAUUCA	ENST00000437099.2|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000396115.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr5_+_140345820_140345820	0.0156259	ACAUUCA	ENST00000289269.5|PCDHAC2|ENSG00000243232.3|protocadherin alpha subfamily C, 2
hg19_v2_chr14_+_74318513_74318562	0.0155907	ACAUUCA	ENST00000555228.1|PTGR2|ENSG00000140043.7|prostaglandin reductase 2 	ENST00000555661.1|PTGR2|ENSG00000140043.7|prostaglandin reductase 2
hg19_v2_chr15_+_79724858_79724858	0.0152891	ACAUUCA	ENST00000305428.3|KIAA1024|ENSG00000169330.4|KIAA1024
hg19_v2_chr15_+_80351910_80351955	0.0151856	ACAUUCA	ENST00000261749.6|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000561060.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr13_-_36705425_36705445	0.0146125	ACAUUCA	ENST00000255448.4|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1 	ENST00000360631.3|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1 	ENST00000379892.4|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1
hg19_v2_chr5_+_102201430_102201478	0.0140545	ACAUUCA	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr5_+_140220769_140220907	0.0138973	ACAUUCA	ENST00000531613.1|PCDHA8|ENSG00000204962.4|protocadherin alpha 8 	ENST00000378123.3|PCDHA8|ENSG00000204962.4|protocadherin alpha 8
hg19_v2_chr6_-_166075557_166075588	0.0138867	ACAUUCA	ENST00000539869.2|PDE10A|ENSG00000112541.9|phosphodiesterase 10A 	ENST00000366882.1|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr17_-_46671323_46671323	0.0137252	ACAUUCA	ENST00000239151.5|HOXB5|ENSG00000120075.5|homeobox B5
hg19_v2_chr3_-_185542817_185542844	0.0136997	ACAUUCA	ENST00000382199.2|IGF2BP2|ENSG00000073792.11|insulin-like growth factor 2 mRNA binding protein 2
hg19_v2_chr1_+_147013182_147013329	0.0134678	ACAUUCA	ENST00000234739.3|BCL9|ENSG00000116128.5|B-cell CLL/lymphoma 9
hg19_v2_chr9_-_138799070_138799284	0.0134234	ACAUUCA	ENST00000389532.4|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1 	ENST00000409386.3|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1
hg19_v2_chr3_+_32147997_32148009	0.0133139	ACAUUCA	ENST00000282541.5|GPD1L|ENSG00000152642.6|glycerol-3-phosphate dehydrogenase 1-like
hg19_v2_chr19_+_10764937_10764998	0.012931	ACAUUCA	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr2_+_85198216_85198305	0.0127897	ACAUUCA	ENST00000456682.1|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1 	ENST00000409785.4|KCMF1|ENSG00000176407.13|potassium channel modulatory factor 1
hg19_v2_chr16_+_53088885_53088961	0.0126839	ACAUUCA	ENST00000566029.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9 	ENST00000447540.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr21_+_44394620_44394737	0.0126066	ACAUUCA	ENST00000291547.5|PKNOX1|ENSG00000160199.10|PBX/knotted 1 homeobox 1
hg19_v2_chr19_+_16940198_16940237	0.0121856	ACAUUCA	ENST00000248054.5|SIN3B|ENSG00000127511.5|SIN3 transcription regulator family member B 	ENST00000596802.1|SIN3B|ENSG00000127511.5|SIN3 transcription regulator family member B 	ENST00000379803.1|SIN3B|ENSG00000127511.5|SIN3 transcription regulator family member B
hg19_v2_chr21_+_47878757_47879024	0.0121767	ACAUUCA	ENST00000400274.1|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000427143.2|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000318711.7|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000457905.3|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000466639.1|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000435722.3|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENST00000417564.2|DIP2A|ENSG00000160305.13|DIP2 disco-interacting protein 2 homolog A (Drosophila)
hg19_v2_chr4_+_3076388_3076431	0.0121043	ACAUUCA	ENST00000355072.5|HTT|ENSG00000197386.6|huntingtin
hg19_v2_chr16_-_75681522_75681577	0.0117965	ACAUUCA	ENST00000568378.1|KARS|ENSG00000065427.10|lysyl-tRNA synthetase 	ENST00000568682.1|KARS|ENSG00000065427.10|lysyl-tRNA synthetase 	ENST00000570215.1|KARS|ENSG00000065427.10|lysyl-tRNA synthetase 	ENST00000319410.5|KARS|ENSG00000065427.10|lysyl-tRNA synthetase 	ENST00000302445.3|KARS|ENSG00000065427.10|lysyl-tRNA synthetase
hg19_v2_chr16_+_81069433_81069462	0.0115766	ACAUUCA	ENST00000299575.4|ATMIN|ENSG00000166454.5|ATM interactor
hg19_v2_chr2_-_40679186_40679297	0.0112186	ACAUUCA	ENST00000406785.2|SLC8A1|ENSG00000183023.14|solute carrier family 8 (sodium/calcium exchanger), member 1
hg19_v2_chrX_+_40944871_40944888	0.0107976	ACAUUCA	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr5_-_32313019_32313081	0.0107919	ACAUUCA	ENST00000280285.5|MTMR12|ENSG00000150712.6|myotubularin related protein 12 	ENST00000264934.5|MTMR12|ENSG00000150712.6|myotubularin related protein 12
hg19_v2_chr2_-_225811747_225811796	0.0106624	ACAUUCA	ENST00000409592.3|DOCK10|ENSG00000135905.14|dedicator of cytokinesis 10
hg19_v2_chr9_-_86595503_86595569	0.010541	ACAUUCA	ENST00000376281.4|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376264.2|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr13_+_113344542_113344643	0.0100995	ACAUUCA	ENST00000487903.1|ATP11A|ENSG00000068650.14|ATPase, class VI, type 11A 	ENST00000375630.2|ATP11A|ENSG00000068650.14|ATPase, class VI, type 11A 	ENST00000375645.3|ATP11A|ENSG00000068650.14|ATPase, class VI, type 11A 	ENST00000283558.8|ATP11A|ENSG00000068650.14|ATPase, class VI, type 11A
hg19_v2_chr15_+_89346657_89346674	0.00991774	ACAUUCA	ENST00000439576.2|ACAN|ENSG00000157766.11|aggrecan
hg19_v2_chr20_-_35580240_35580251	0.00983482	ACAUUCA	ENST00000262878.4|SAMHD1|ENSG00000101347.7|SAM domain and HD domain 1
hg19_v2_chr4_-_42659102_42659161	0.00951519	ACAUUCA	ENST00000264449.10|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000510289.1|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000381668.5|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
hg19_v2_chr6_-_152958521_152958549	0.0092713	ACAUUCA	ENST00000367255.5|SYNE1|ENSG00000131018.18|spectrin repeat containing, nuclear envelope 1 	ENST00000265368.4|SYNE1|ENSG00000131018.18|spectrin repeat containing, nuclear envelope 1 	ENST00000448038.1|SYNE1|ENSG00000131018.18|spectrin repeat containing, nuclear envelope 1 	ENST00000341594.5|SYNE1|ENSG00000131018.18|spectrin repeat containing, nuclear envelope 1
hg19_v2_chr17_-_18585541_18585572	0.00918267	ACAUUCA	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr9_-_16870704_16870841	0.00902539	ACAUUCA	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr4_-_8873531_8873543	0.00884166	ACAUUCA	ENST00000400677.3|HMX1|ENSG00000215612.5|H6 family homeobox 1
hg19_v2_chr12_+_95867727_95867874	0.00838932	ACAUUCA	ENST00000323666.5|METAP2|ENSG00000111142.9|methionyl aminopeptidase 2 	ENST00000546753.1|METAP2|ENSG00000111142.9|methionyl aminopeptidase 2
hg19_v2_chr3_-_52312636_52312673	0.00811126	ACAUUCA	ENST00000296490.3|WDR82|ENSG00000164091.7|WD repeat domain 82
hg19_v2_chr12_-_106641728_106641805	0.00799591	ACAUUCA	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chrX_+_21857717_21857763	0.00788367	ACAUUCA	ENST00000379484.5|MBTPS2|ENSG00000012174.7|membrane-bound transcription factor peptidase, site 2
hg19_v2_chr13_-_79979919_79979945	0.0073561	ACAUUCA	ENST00000267229.7|RBM26|ENSG00000139746.11|RNA binding motif protein 26
hg19_v2_chr18_+_11851383_11851399	0.0072867	ACAUUCA	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr12_-_16761007_16761080	0.00722375	ACAUUCA	ENST00000354662.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2) 	ENST00000441439.2|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr6_+_37321748_37321819	0.00692501	ACAUUCA	ENST00000373479.4|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase 	ENST00000394443.4|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase
hg19_v2_chr17_-_27169745_27169857	0.00674769	ACAUUCA	ENST00000583307.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000581229.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000582266.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000577376.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000577682.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000581381.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000341217.5|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000581407.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B 	ENST00000583522.1|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B
hg19_v2_chr11_-_128392085_128392232	0.00654175	ACAUUCA	ENST00000526145.2|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000531611.1|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000319397.6|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000345075.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1 	ENST00000535549.1|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr9_+_103235365_103235419	0.0065071	ACAUUCA	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr4_+_160188889_160188968	0.00624808	ACAUUCA	ENST00000264431.4|RAPGEF2|ENSG00000109756.4|Rap guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr5_+_140254884_140255058	0.00615443	ACAUUCA	ENST00000398631.2|PCDHA12|ENSG00000251664.2|protocadherin alpha 12
hg19_v2_chr14_+_100705322_100705360	0.00610156	ACAUUCA	ENST00000262238.4|YY1|ENSG00000100811.6|YY1 transcription factor
hg19_v2_chr22_+_40573921_40573946	0.00592085	ACAUUCA	ENST00000454349.2|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B 	ENST00000335727.9|TNRC6B|ENSG00000100354.16|trinucleotide repeat containing 6B
hg19_v2_chr1_+_171454659_171454723	0.005827	ACAUUCA	ENST00000367742.3|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C 	ENST00000338920.4|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C
hg19_v2_chr10_-_119806085_119806114	0.00482971	ACAUUCA	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr10_-_98945677_98945729	0.00473168	ACAUUCA	ENST00000266058.4|SLIT1|ENSG00000187122.12|slit homolog 1 (Drosophila) 	ENST00000371041.3|SLIT1|ENSG00000187122.12|slit homolog 1 (Drosophila)
hg19_v2_chr6_+_138483058_138483159	0.00471416	ACAUUCA	ENST00000251691.4|KIAA1244|ENSG00000112379.8|KIAA1244
hg19_v2_chr1_+_36273743_36273773	0.00448427	ACAUUCA	ENST00000373210.3|AGO4|ENSG00000134698.10|argonaute RISC catalytic component 4
hg19_v2_chr19_-_40562063_40562143	0.00448334	ACAUUCA	ENST00000598845.1|ZNF780B|ENSG00000128000.11|zinc finger protein 780B 	ENST00000593605.1|ZNF780B|ENSG00000128000.11|zinc finger protein 780B 	ENST00000221355.6|ZNF780B|ENSG00000128000.11|zinc finger protein 780B 	ENST00000434248.1|ZNF780B|ENSG00000128000.11|zinc finger protein 780B
hg19_v2_chr2_-_220110187_220110200	0.00402946	ACAUUCA	ENST00000295759.7|GLB1L|ENSG00000163521.11|galactosidase, beta 1-like 	ENST00000392089.2|GLB1L|ENSG00000163521.11|galactosidase, beta 1-like
hg19_v2_chr9_-_33167308_33167378	0.00397054	ACAUUCA	ENST00000535206.1|B4GALT1|ENSG00000086062.8|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 	ENST00000379731.4|B4GALT1|ENSG00000086062.8|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
hg19_v2_chr5_+_140235469_140235634	0.00353461	ACAUUCA	ENST00000506939.2|PCDHA10|ENSG00000250120.2|protocadherin alpha 10 	ENST00000307360.5|PCDHA10|ENSG00000250120.2|protocadherin alpha 10
hg19_v2_chr15_+_77223960_77223994	0.00333357	ACAUUCA	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr1_-_220445757_220445819	0.00269817	ACAUUCA	ENST00000358951.2|RAB3GAP2|ENSG00000118873.11|RAB3 GTPase activating protein subunit 2 (non-catalytic)
hg19_v2_chr6_+_114178512_114178586	0.00263432	ACAUUCA	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr1_+_244816237_244816357	0.0021714	ACAUUCA	ENST00000302550.11|DESI2|ENSG00000121644.14|desumoylating isopeptidase 2
hg19_v2_chr10_-_1779663_1779676	0.0021208	ACAUUCA	ENST00000381312.1|ADARB2|ENSG00000185736.11|adenosine deaminase, RNA-specific, B2 (non-functional)
hg19_v2_chr6_-_163148780_163148813	0.00208923	ACAUUCA	ENST00000366892.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366898.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366897.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366896.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase
hg19_v2_chr19_-_14629224_14629262	0.00207342	ACAUUCA	ENST00000254322.2|DNAJB1|ENSG00000132002.3|DnaJ (Hsp40) homolog, subfamily B, member 1
hg19_v2_chr20_-_9819479_9819532	0.00197609	ACAUUCA	ENST00000378423.1|PAK7|ENSG00000101349.12|p21 protein (Cdc42/Rac)-activated kinase 7 	ENST00000353224.5|PAK7|ENSG00000101349.12|p21 protein (Cdc42/Rac)-activated kinase 7
hg19_v2_chr19_-_2050852_2050895	0.00159826	ACAUUCA	ENST00000541165.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000591601.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr6_+_143929307_143929322	0.00156749	ACAUUCA	ENST00000427704.2|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2 	ENST00000305766.6|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2
hg19_v2_chr5_+_140306478_140306478	0.00138479	ACAUUCA	ENST00000253807.2|PCDHAC1|ENSG00000248383.3|protocadherin alpha subfamily C, 1
hg19_v2_chr19_-_16682987_16683243	0.00131861	ACAUUCA	ENST00000431408.1|SLC35E1|ENSG00000127526.9|solute carrier family 35, member E1 	ENST00000436553.2|SLC35E1|ENSG00000127526.9|solute carrier family 35, member E1 	ENST00000595753.1|SLC35E1|ENSG00000127526.9|solute carrier family 35, member E1
hg19_v2_chr1_-_120612240_120612288	0.00113928	ACAUUCA	ENST00000256646.2|NOTCH2|ENSG00000134250.13|notch 2
hg19_v2_chr10_+_75504105_75504190	0.000947719	ACAUUCA	ENST00000535742.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000546025.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000345254.4|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000540668.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000339365.2|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000411652.2|SEC24C|ENSG00000176986.10|SEC24 family member C
hg19_v2_chr3_+_141205852_141205929	0.00084279	ACAUUCA	ENST00000286364.3|RASA2|ENSG00000155903.7|RAS p21 protein activator 2 	ENST00000452898.1|RASA2|ENSG00000155903.7|RAS p21 protein activator 2
hg19_v2_chr4_+_158141843_158141895	0.000228103	ACAUUCA	ENST00000509417.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000296526.7|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr16_+_50187556_50187779	0.0001621	ACAUUCA	ENST00000561678.1|PAPD5|ENSG00000121274.8|PAP associated domain containing 5 	ENST00000357464.3|PAPD5|ENSG00000121274.8|PAP associated domain containing 5
