hg19_v2_chr1_-_92371839_92371892	2.18986	ALX1_ARX	ENST00000370399.2|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chrX_-_11284095_11284131	1.16246	ALX1_ARX	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr6_+_34204642_34204664	0.891767	ALX1_ARX	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr17_-_39023462_39023477	0.795603	ALX1_ARX	ENST00000251643.4|KRT12|ENSG00000187242.4|keratin 12
hg19_v2_chr6_+_26199737_26199754	0.681757	ALX1_ARX	ENST00000359985.1|HIST1H2BF|ENSG00000197846.3|histone cluster 1, H2bf
hg19_v2_chr3_-_141747950_141748004	0.653621	ALX1_ARX	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr14_+_24099318_24099333	0.650033	ALX1_ARX	ENST00000432832.2|DHRS2|ENSG00000100867.10|dehydrogenase/reductase (SDR family) member 2
hg19_v2_chr3_-_157824292_157824334	0.619364	ALX1_ARX	ENST00000483851.2|SHOX2|ENSG00000168779.15|short stature homeobox 2
hg19_v2_chr4_-_100356291_100356446	0.586071	ALX1_ARX	ENST00000476959.1|ADH7|ENSG00000196344.7|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 	ENST00000482593.1|ADH7|ENSG00000196344.7|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
hg19_v2_chr16_+_68119247_68119293	0.579477	ALX1_ARX	ENST00000575270.1|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
hg19_v2_chr2_-_55496174_55496334	0.569396	ALX1_ARX	ENST00000417363.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000412530.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000394600.3|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000366137.2|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000420637.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2
hg19_v2_chr3_-_33759699_33759848	0.545226	ALX1_ARX	ENST00000399362.4|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2 	ENST00000359576.5|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2 	ENST00000307312.7|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr8_-_57123815_57123867	0.523894	ALX1_ARX	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr8_-_91095099_91095113	0.522169	ALX1_ARX	ENST00000265431.3|CALB1|ENSG00000104327.3|calbindin 1, 28kDa
hg19_v2_chr6_-_26199499_26199528	0.505294	ALX1_ARX	ENST00000377831.5|HIST1H3D|ENSG00000197409.6|histone cluster 1, H3d
hg19_v2_chr6_-_41039567_41039597	0.44708	ALX1_ARX	ENST00000468811.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr4_-_100356551_100356667	0.425431	ALX1_ARX	ENST00000209665.4|ADH7|ENSG00000196344.7|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
hg19_v2_chr3_-_141747439_141747452	0.416544	ALX1_ARX	ENST00000467667.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr8_+_107738240_107738340	0.405704	ALX1_ARX	ENST00000449762.2|OXR1|ENSG00000164830.13|oxidation resistance 1 	ENST00000297447.6|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr16_+_68119324_68119364	0.366805	ALX1_ARX	ENST00000349223.5|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
hg19_v2_chr16_+_68119440_68119561	0.36272	ALX1_ARX	ENST00000346183.3|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 	ENST00000329524.4|NFATC3|ENSG00000072736.14|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
hg19_v2_chr7_-_140482926_140482957	0.357114	ALX1_ARX	ENST00000496384.2|BRAF|ENSG00000157764.8|v-raf murine sarcoma viral oncogene homolog B
hg19_v2_chrX_+_77166172_77166261	0.355124	ALX1_ARX	ENST00000343533.5|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000350425.4|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000341514.6|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide
hg19_v2_chr6_-_26199471_26199494	0.353016	ALX1_ARX	ENST00000341023.1|HIST1H2AD|ENSG00000196866.2|histone cluster 1, H2ad
hg19_v2_chr8_-_102803163_102803211	0.348796	ALX1_ARX	ENST00000523645.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000520346.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000220931.6|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522448.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522951.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522252.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000519098.1|NCALD|ENSG00000104490.13|neurocalcin delta
hg19_v2_chr1_+_206557366_206557368	0.336603	ALX1_ARX	ENST00000414007.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2 	ENST00000419187.2|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chr3_-_141747459_141747507	0.33653	ALX1_ARX	ENST00000477292.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000478006.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000495310.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000486111.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr8_-_86253888_86253944	0.336443	ALX1_ARX	ENST00000522389.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000432364.2|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517618.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr6_-_99797522_99797572	0.3137	ALX1_ARX	ENST00000389677.5|FAXC|ENSG00000146267.11|failed axon connections homolog (Drosophila)
hg19_v2_chr9_+_135854091_135854159	0.266975	ALX1_ARX	ENST00000450530.1|GFI1B|ENSG00000165702.8|growth factor independent 1B transcription repressor 	ENST00000534944.1|GFI1B|ENSG00000165702.8|growth factor independent 1B transcription repressor
hg19_v2_chr1_+_50569575_50569586	0.251738	ALX1_ARX	ENST00000371827.1|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr17_+_39240459_39240459	0.246624	ALX1_ARX	ENST00000391417.4|KRTAP4-7|ENSG00000240871.3|keratin associated protein 4-7
hg19_v2_chr12_-_23737534_23737550	0.237288	ALX1_ARX	ENST00000396007.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr16_+_1728257_1728296	0.220998	ALX1_ARX	ENST00000248098.3|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000562684.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000561516.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000382711.5|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000566742.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like
hg19_v2_chr2_+_58655461_58655492	0.211965	ALX1_ARX	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr2_+_196313239_196313256	0.211673	ALX1_ARX	ENST00000413290.1|AC064834.1|ENSG00000224099.1|AC064834.1
hg19_v2_chr1_-_200379129_200379174	0.209196	ALX1_ARX	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr17_+_7155819_7155942	0.201926	ALX1_ARX	ENST00000570322.1|ELP5|ENSG00000170291.10|elongator acetyltransferase complex subunit 5 	ENST00000576496.1|ELP5|ENSG00000170291.10|elongator acetyltransferase complex subunit 5 	ENST00000574841.2|ELP5|ENSG00000170291.10|elongator acetyltransferase complex subunit 5
hg19_v2_chr2_+_162272605_162272753	0.201834	ALX1_ARX	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr12_-_118628350_118628371	0.201173	ALX1_ARX	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr2_-_145278475_145278621	0.198304	ALX1_ARX	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr2_-_70529180_70529222	0.197606	ALX1_ARX	ENST00000450256.1|FAM136A|ENSG00000035141.3|family with sequence similarity 136, member A 	ENST00000037869.3|FAM136A|ENSG00000035141.3|family with sequence similarity 136, member A
hg19_v2_chr6_-_150067696_150067814	0.196641	ALX1_ARX	ENST00000340413.2|NUP43|ENSG00000120253.9|nucleoporin 43kDa 	ENST00000367403.3|NUP43|ENSG00000120253.9|nucleoporin 43kDa
hg19_v2_chr12_-_118797475_118797527	0.192798	ALX1_ARX	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr6_+_27791862_27791884	0.186424	ALX1_ARX	ENST00000355057.1|HIST1H4J|ENSG00000197238.3|histone cluster 1, H4j
hg19_v2_chr6_-_32908792_32908847	0.184914	ALX1_ARX	ENST00000418107.2|HLA-DMB|ENSG00000242574.4|major histocompatibility complex, class II, DM beta
hg19_v2_chr4_-_87028478_87028514	0.180981	ALX1_ARX	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr4_-_176733897_176733906	0.18022	ALX1_ARX	ENST00000393658.2|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chrX_-_138724994_138725023	0.175871	ALX1_ARX	ENST00000536274.1|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr19_-_6393216_6393229	0.171922	ALX1_ARX	ENST00000595047.1|GTF2F1|ENSG00000125651.9|general transcription factor IIF, polypeptide 1, 74kDa
hg19_v2_chr12_+_122241928_122242086	0.171626	ALX1_ARX	ENST00000604567.1|SETD1B|ENSG00000139718.6|SET domain containing 1B 	ENST00000542440.1|SETD1B|ENSG00000139718.6|SET domain containing 1B
hg19_v2_chr17_+_71228537_71228668	0.169879	ALX1_ARX	ENST00000577615.1|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80 	ENST00000585109.1|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80
hg19_v2_chrX_+_119737806_119737835	0.161236	ALX1_ARX	ENST00000371317.5|MCTS1|ENSG00000232119.3|malignant T cell amplified sequence 1
hg19_v2_chr10_+_18689637_18689742	0.14838	ALX1_ARX	ENST00000377315.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr19_-_6393465_6393479	0.141716	ALX1_ARX	ENST00000394456.5|GTF2F1|ENSG00000125651.9|general transcription factor IIF, polypeptide 1, 74kDa
hg19_v2_chr17_+_71228740_71228776	0.136971	ALX1_ARX	ENST00000268942.8|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80 	ENST00000359042.2|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80
hg19_v2_chr14_-_38064198_38064239	0.135693	ALX1_ARX	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr11_+_128563652_128563689	0.132446	ALX1_ARX	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr7_+_136553370_136553421	0.127682	ALX1_ARX	ENST00000445907.2|CHRM2|ENSG00000181072.7|cholinergic receptor, muscarinic 2
hg19_v2_chr6_-_32908765_32908786	0.125866	ALX1_ARX	ENST00000416244.2|HLA-DMB|ENSG00000242574.4|major histocompatibility complex, class II, DM beta
hg19_v2_chr1_+_186265399_186265414	0.125293	ALX1_ARX	ENST00000367486.3|PRG4|ENSG00000116690.7|proteoglycan 4 	ENST00000367484.3|PRG4|ENSG00000116690.7|proteoglycan 4 	ENST00000533951.1|PRG4|ENSG00000116690.7|proteoglycan 4 	ENST00000367482.4|PRG4|ENSG00000116690.7|proteoglycan 4 	ENST00000367483.4|PRG4|ENSG00000116690.7|proteoglycan 4 	ENST00000367485.4|PRG4|ENSG00000116690.7|proteoglycan 4 	ENST00000445192.2|PRG4|ENSG00000116690.7|proteoglycan 4
hg19_v2_chr14_+_95078714_95078739	0.122685	ALX1_ARX	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr6_-_111804905_111804921	0.121574	ALX1_ARX	ENST00000358835.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000435970.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr15_+_57511609_57511664	0.119666	ALX1_ARX	ENST00000543579.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000537840.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000343827.3|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr9_-_21202204_21202204	0.119583	ALX1_ARX	ENST00000239347.3|IFNA7|ENSG00000214042.1|interferon, alpha 7
hg19_v2_chr3_+_190105909_190105966	0.119058	ALX1_ARX	ENST00000456423.1|CLDN16|ENSG00000113946.3|claudin 16
hg19_v2_chr10_+_35464513_35464631	0.11816	ALX1_ARX	ENST00000494479.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000463314.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000342105.3|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000495301.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000463960.1|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr3_+_12329397_12329433	0.118157	ALX1_ARX	ENST00000397015.2|PPARG|ENSG00000132170.15|peroxisome proliferator-activated receptor gamma
hg19_v2_chr2_+_185463093_185463181	0.117991	ALX1_ARX	ENST00000302277.6|ZNF804A|ENSG00000170396.6|zinc finger protein 804A
hg19_v2_chr5_-_55412774_55412784	0.117613	ALX1_ARX	ENST00000434982.2|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55
hg19_v2_chr9_+_42671887_42671887	0.117355	ALX1_ARX	ENST00000456520.1|CBWD7|ENSG00000215126.6|COBW domain containing 7 	ENST00000377391.3|CBWD7|ENSG00000215126.6|COBW domain containing 7
hg19_v2_chr1_-_110155671_110155685	0.117319	ALX1_ARX	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr12_-_112123524_112123562	0.114843	ALX1_ARX	ENST00000327551.6|BRAP|ENSG00000089234.11|BRCA1 associated protein
hg19_v2_chrX_+_149887090_149887149	0.114333	ALX1_ARX	ENST00000538506.1|MTMR1|ENSG00000063601.12|myotubularin related protein 1
hg19_v2_chr3_+_39424828_39424918	0.1134	ALX1_ARX	ENST00000273158.4|SLC25A38|ENSG00000144659.6|solute carrier family 25, member 38 	ENST00000431510.1|SLC25A38|ENSG00000144659.6|solute carrier family 25, member 38
hg19_v2_chr1_+_62439037_62439047	0.112324	ALX1_ARX	ENST00000545929.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr3_+_12329358_12329393	0.110739	ALX1_ARX	ENST00000309576.6|PPARG|ENSG00000132170.15|peroxisome proliferator-activated receptor gamma
hg19_v2_chr4_+_113568207_113568367	0.109007	ALX1_ARX	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr11_+_95523621_95523710	0.108011	ALX1_ARX	ENST00000325542.5|CEP57|ENSG00000166037.6|centrosomal protein 57kDa 	ENST00000325486.5|CEP57|ENSG00000166037.6|centrosomal protein 57kDa 	ENST00000544522.1|CEP57|ENSG00000166037.6|centrosomal protein 57kDa 	ENST00000541365.1|CEP57|ENSG00000166037.6|centrosomal protein 57kDa
hg19_v2_chr2_+_44001172_44001230	0.107622	ALX1_ARX	ENST00000260605.8|DYNC2LI1|ENSG00000138036.14|dynein, cytoplasmic 2, light intermediate chain 1 	ENST00000406852.3|DYNC2LI1|ENSG00000138036.14|dynein, cytoplasmic 2, light intermediate chain 1 	ENST00000443170.3|DYNC2LI1|ENSG00000138036.14|dynein, cytoplasmic 2, light intermediate chain 1 	ENST00000398823.2|DYNC2LI1|ENSG00000138036.14|dynein, cytoplasmic 2, light intermediate chain 1 	ENST00000605786.1|DYNC2LI1|ENSG00000138036.14|dynein, cytoplasmic 2, light intermediate chain 1
hg19_v2_chr3_-_87325612_87325654	0.106198	ALX1_ARX	ENST00000561167.1|POU1F1|ENSG00000064835.6|POU class 1 homeobox 1 	ENST00000560656.1|POU1F1|ENSG00000064835.6|POU class 1 homeobox 1 	ENST00000344265.3|POU1F1|ENSG00000064835.6|POU class 1 homeobox 1
hg19_v2_chr17_+_71228793_71228838	0.103494	ALX1_ARX	ENST00000426147.2|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80
hg19_v2_chr11_+_120973375_120973375	0.102178	ALX1_ARX	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr2_+_152214098_152214115	0.0995391	ALX1_ARX	ENST00000243347.3|TNFAIP6|ENSG00000123610.3|tumor necrosis factor, alpha-induced protein 6
hg19_v2_chr8_+_26150628_26150749	0.0987338	ALX1_ARX	ENST00000523925.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000315985.7|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr5_+_36152179_36152277	0.0981924	ALX1_ARX	ENST00000508514.1|SKP2|ENSG00000145604.11|S-phase kinase-associated protein 2, E3 ubiquitin protein ligase 	ENST00000513151.1|SKP2|ENSG00000145604.11|S-phase kinase-associated protein 2, E3 ubiquitin protein ligase 	ENST00000546211.1|SKP2|ENSG00000145604.11|S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
hg19_v2_chr5_-_115872142_115872154	0.0947978	ALX1_ARX	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr1_-_200379180_200379191	0.0947116	ALX1_ARX	ENST00000294740.3|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr1_+_52682052_52682052	0.0946652	ALX1_ARX	ENST00000371591.1|ZFYVE9|ENSG00000157077.10|zinc finger, FYVE domain containing 9
hg19_v2_chr8_-_61880248_61880334	0.0942778	ALX1_ARX	ENST00000525556.1|AC022182.3|ENSG00000254802.1|AC022182.3
hg19_v2_chr2_+_228678550_228678570	0.0924254	ALX1_ARX	ENST00000409189.3|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20 	ENST00000358813.4|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20
hg19_v2_chr17_-_39623681_39623681	0.0889602	ALX1_ARX	ENST00000225899.3|KRT32|ENSG00000108759.3|keratin 32
hg19_v2_chr14_-_36988882_36988898	0.088641	ALX1_ARX	ENST00000498187.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr7_+_93535817_93535822	0.0826863	ALX1_ARX	ENST00000248572.5|GNGT1|ENSG00000127928.8|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
hg19_v2_chr3_-_130465604_130465682	0.0809436	ALX1_ARX	ENST00000356763.3|PIK3R4|ENSG00000196455.3|phosphoinositide-3-kinase, regulatory subunit 4
hg19_v2_chr11_-_82708435_82708472	0.0793966	ALX1_ARX	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr5_+_145826867_145826903	0.0781178	ALX1_ARX	ENST00000296702.5|TCERG1|ENSG00000113649.7|transcription elongation regulator 1 	ENST00000394421.2|TCERG1|ENSG00000113649.7|transcription elongation regulator 1
hg19_v2_chr2_-_166930131_166930149	0.0767857	ALX1_ARX	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr3_+_140660743_140660758	0.0746113	ALX1_ARX	ENST00000453248.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr7_-_25268104_25268106	0.0731226	ALX1_ARX	ENST00000222674.2|NPVF|ENSG00000105954.2|neuropeptide VF precursor
hg19_v2_chr1_+_92632542_92632609	0.0714177	ALX1_ARX	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chr6_+_31895254_31895274	0.0709103	ALX1_ARX	ENST00000299367.5|C2|ENSG00000166278.10|complement component 2 	ENST00000442278.2|C2|ENSG00000166278.10|complement component 2
hg19_v2_chr2_+_65215604_65215625	0.0706846	ALX1_ARX	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr7_+_55980331_55980331	0.0684807	ALX1_ARX	ENST00000429591.2|ZNF713|ENSG00000178665.10|zinc finger protein 713
hg19_v2_chr5_+_40909354_40909354	0.0676957	ALX1_ARX	ENST00000313164.9|C7|ENSG00000112936.14|complement component 7
hg19_v2_chr6_-_27835357_27835375	0.0675238	ALX1_ARX	ENST00000331442.3|HIST1H1B|ENSG00000184357.3|histone cluster 1, H1b
hg19_v2_chr6_-_133055815_133055834	0.066467	ALX1_ARX	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr15_+_44092784_44092823	0.0649338	ALX1_ARX	ENST00000458412.1|HYPK|ENSG00000242028.1|huntingtin interacting protein K
hg19_v2_chr10_+_97803151_97803348	0.0641496	ALX1_ARX	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr12_-_53601000_53601043	0.0627487	ALX1_ARX	ENST00000338737.4|ITGB7|ENSG00000139626.11|integrin, beta 7 	ENST00000549086.2|ITGB7|ENSG00000139626.11|integrin, beta 7
hg19_v2_chr3_-_87325728_87325739	0.0620408	ALX1_ARX	ENST00000350375.2|POU1F1|ENSG00000064835.6|POU class 1 homeobox 1
hg19_v2_chr5_+_59783941_59784066	0.0616098	ALX1_ARX	ENST00000506884.1|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding) 	ENST00000504876.2|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v2_chr1_+_104615595_104615645	0.0615962	ALX1_ARX	ENST00000418362.1|RP11-364B6.1|ENSG00000215869.3|RP11-364B6.1
hg19_v2_chr4_+_118955500_118955612	0.0612682	ALX1_ARX	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr8_+_38677850_38678065	0.0609703	ALX1_ARX	ENST00000518809.1|TACC1|ENSG00000147526.15|transforming, acidic coiled-coil containing protein 1 	ENST00000520611.1|TACC1|ENSG00000147526.15|transforming, acidic coiled-coil containing protein 1
hg19_v2_chr11_-_8964580_8964580	0.0557065	ALX1_ARX	ENST00000325884.1|ASCL3|ENSG00000176009.2|achaete-scute family bHLH transcription factor 3
hg19_v2_chr12_-_43833515_43833515	0.0543354	ALX1_ARX	ENST00000549670.1|ADAMTS20|ENSG00000173157.12|ADAM metallopeptidase with thrombospondin type 1 motif, 20 	ENST00000395541.2|ADAMTS20|ENSG00000173157.12|ADAM metallopeptidase with thrombospondin type 1 motif, 20
hg19_v2_chr2_+_75873902_75873932	0.0537378	ALX1_ARX	ENST00000393909.2|MRPL19|ENSG00000115364.9|mitochondrial ribosomal protein L19 	ENST00000358788.6|MRPL19|ENSG00000115364.9|mitochondrial ribosomal protein L19 	ENST00000409374.1|MRPL19|ENSG00000115364.9|mitochondrial ribosomal protein L19
hg19_v2_chr21_-_31588365_31588398	0.0535545	ALX1_ARX	ENST00000399899.1|CLDN8|ENSG00000156284.4|claudin 8
hg19_v2_chr12_-_10324716_10324742	0.0534262	ALX1_ARX	ENST00000545927.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000432556.2|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000309539.3|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000544577.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1
hg19_v2_chr12_-_53601055_53601091	0.0532449	ALX1_ARX	ENST00000552972.1|ITGB7|ENSG00000139626.11|integrin, beta 7 	ENST00000422257.3|ITGB7|ENSG00000139626.11|integrin, beta 7 	ENST00000267082.5|ITGB7|ENSG00000139626.11|integrin, beta 7
hg19_v2_chr10_-_102989551_102989551	0.052243	ALX1_ARX	ENST00000370193.2|LBX1|ENSG00000138136.5|ladybird homeobox 1
hg19_v2_chr1_+_183774240_183774270	0.051783	ALX1_ARX	ENST00000360851.3|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr2_+_54683419_54683442	0.0499996	ALX1_ARX	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr3_+_140660634_140660729	0.0489165	ALX1_ARX	ENST00000446041.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000507429.1|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000324194.6|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr16_+_24549014_24549082	0.0484731	ALX1_ARX	ENST00000564314.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6 	ENST00000567686.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr5_+_137203557_137203571	0.0461471	ALX1_ARX	ENST00000515645.1|MYOT|ENSG00000120729.5|myotilin
hg19_v2_chr4_+_88571429_88571459	0.0440279	ALX1_ARX	ENST00000339673.6|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1 	ENST00000282479.7|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1
hg19_v2_chr3_-_101039402_101039429	0.0426382	ALX1_ARX	ENST00000193391.7|IMPG2|ENSG00000081148.11|interphotoreceptor matrix proteoglycan 2
hg19_v2_chr10_-_29923893_29923907	0.0421199	ALX1_ARX	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr4_+_76649797_76650004	0.041611	ALX1_ARX	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr2_-_145275228_145275464	0.0412727	ALX1_ARX	ENST00000427902.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409487.3|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000470879.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000435831.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr12_+_59989918_59989965	0.0409936	ALX1_ARX	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr1_+_154401791_154401819	0.0387098	ALX1_ARX	ENST00000476006.1|IL6R|ENSG00000160712.8|interleukin 6 receptor
hg19_v2_chr18_-_13915530_13915540	0.037442	ALX1_ARX	ENST00000327606.3|MC2R|ENSG00000185231.4|melanocortin 2 receptor (adrenocorticotropic hormone)
hg19_v2_chr2_+_101437487_101437619	0.0355792	ALX1_ARX	ENST00000427413.1|NPAS2|ENSG00000170485.12|neuronal PAS domain protein 2 	ENST00000542504.1|NPAS2|ENSG00000170485.12|neuronal PAS domain protein 2
hg19_v2_chr1_+_180601139_180601180	0.0342053	ALX1_ARX	ENST00000367590.4|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1 	ENST00000367589.3|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1
hg19_v2_chr2_+_191334212_191334242	0.0335131	ALX1_ARX	ENST00000444317.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000535751.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr3_-_167191814_167191842	0.0324064	ALX1_ARX	ENST00000466903.1|SERPINI2|ENSG00000114204.10|serpin peptidase inhibitor, clade I (pancpin), member 2 	ENST00000264677.4|SERPINI2|ENSG00000114204.10|serpin peptidase inhibitor, clade I (pancpin), member 2
hg19_v2_chr5_-_59783882_59783910	0.0309786	ALX1_ARX	ENST00000505507.2|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000502484.2|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr3_-_45837959_45837975	0.0305893	ALX1_ARX	ENST00000353278.4|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20 	ENST00000456124.2|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20
hg19_v2_chrX_-_15619076_15619137	0.0297876	ALX1_ARX	ENST00000252519.3|ACE2|ENSG00000130234.6|angiotensin I converting enzyme 2
hg19_v2_chr3_-_45838011_45838034	0.0291443	ALX1_ARX	ENST00000358525.4|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20 	ENST00000413781.1|SLC6A20|ENSG00000163817.11|solute carrier family 6 (proline IMINO transporter), member 20
hg19_v2_chr4_+_155484155_155484178	0.0289052	ALX1_ARX	ENST00000509493.1|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr2_+_161993465_161993481	0.0277079	ALX1_ARX	ENST00000457476.1|TANK|ENSG00000136560.9|TRAF family member-associated NFKB activator
hg19_v2_chr10_-_112064665_112064737	0.0257317	ALX1_ARX	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr1_-_13390765_13390765	0.0247703	ALX1_ARX	ENST00000357367.2|PRAMEF8|ENSG00000182330.6|PRAME family member 8
hg19_v2_chr5_+_36152091_36152114	0.0229317	ALX1_ARX	ENST00000274254.5|SKP2|ENSG00000145604.11|S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
hg19_v2_chr5_-_39270725_39270771	0.0216573	ALX1_ARX	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr8_-_6420930_6420957	0.0210356	ALX1_ARX	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr3_+_121774202_121774222	0.0200858	ALX1_ARX	ENST00000469710.1|CD86|ENSG00000114013.11|CD86 molecule 	ENST00000493101.1|CD86|ENSG00000114013.11|CD86 molecule 	ENST00000330540.2|CD86|ENSG00000114013.11|CD86 molecule 	ENST00000264468.5|CD86|ENSG00000114013.11|CD86 molecule
hg19_v2_chr2_+_119699742_119699777	0.0184621	ALX1_ARX	ENST00000327097.4|MARCO|ENSG00000019169.9|macrophage receptor with collagenous structure
hg19_v2_chr4_+_156824840_156824858	0.0157648	ALX1_ARX	ENST00000536354.2|TDO2|ENSG00000151790.4|tryptophan 2,3-dioxygenase
hg19_v2_chr11_-_58499434_58499452	0.015678	ALX1_ARX	ENST00000344743.3|GLYAT|ENSG00000149124.6|glycine-N-acyltransferase 	ENST00000278400.3|GLYAT|ENSG00000149124.6|glycine-N-acyltransferase
hg19_v2_chr12_+_122688090_122688284	0.0153614	ALX1_ARX	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr3_-_195310802_195310818	0.0121286	ALX1_ARX	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr1_+_158323755_158323779	0.0117748	ALX1_ARX	ENST00000368157.1|CD1E|ENSG00000158488.11|CD1e molecule 	ENST00000368156.1|CD1E|ENSG00000158488.11|CD1e molecule 	ENST00000368155.3|CD1E|ENSG00000158488.11|CD1e molecule 	ENST00000368154.1|CD1E|ENSG00000158488.11|CD1e molecule 	ENST00000368160.3|CD1E|ENSG00000158488.11|CD1e molecule 	ENST00000368161.3|CD1E|ENSG00000158488.11|CD1e molecule
hg19_v2_chr13_-_47471155_47471214	0.0116419	ALX1_ARX	ENST00000543956.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled 	ENST00000542664.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
hg19_v2_chr12_-_118796910_118796943	0.0112763	ALX1_ARX	ENST00000541186.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000539872.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr18_+_66465302_66465324	0.0109965	ALX1_ARX	ENST00000360242.5|CCDC102B|ENSG00000150636.11|coiled-coil domain containing 102B 	ENST00000358653.5|CCDC102B|ENSG00000150636.11|coiled-coil domain containing 102B
hg19_v2_chr12_+_12878829_12878871	0.0080931	ALX1_ARX	ENST00000326765.6|APOLD1|ENSG00000178878.8|apolipoprotein L domain containing 1
hg19_v2_chr4_-_174320687_174320687	0.00719428	ALX1_ARX	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr4_+_155484103_155484147	0.00684942	ALX1_ARX	ENST00000302068.4|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr5_-_160279207_160279247	0.00666773	ALX1_ARX	ENST00000327245.5|ATP10B|ENSG00000118322.8|ATPase, class V, type 10B
hg19_v2_chr12_-_67197760_67198052	0.00547535	ALX1_ARX	ENST00000539540.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000540433.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000541947.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538373.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr3_+_40518599_40518664	0.00544939	ALX1_ARX	ENST00000314686.5|ZNF619|ENSG00000177873.8|zinc finger protein 619 	ENST00000447116.2|ZNF619|ENSG00000177873.8|zinc finger protein 619 	ENST00000429348.2|ZNF619|ENSG00000177873.8|zinc finger protein 619 	ENST00000456778.1|ZNF619|ENSG00000177873.8|zinc finger protein 619
hg19_v2_chr7_+_107224364_107224391	0.00464641	ALX1_ARX	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr15_+_66874502_66874528	0.00422982	ALX1_ARX	ENST00000558797.1|RP11-321F6.1|ENSG00000259471.1|HCG2003567; Uncharacterized protein
hg19_v2_chr6_+_45296391_45296464	0.00389169	ALX1_ARX	ENST00000371436.6|RUNX2|ENSG00000124813.16|runt-related transcription factor 2 	ENST00000576263.1|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chrX_+_16668278_16668282	0.00365521	ALX1_ARX	ENST00000380200.3|S100G|ENSG00000169906.5|S100 calcium binding protein G
hg19_v2_chr3_-_98241760_98241910	0.00364728	ALX1_ARX	ENST00000507874.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000502299.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000508659.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000510545.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000511667.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000394185.2|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000394181.2|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000508902.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000341181.6|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000437922.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000394180.2|CLDND1|ENSG00000080822.12|claudin domain containing 1
hg19_v2_chr5_-_134735568_134735584	0.00353024	ALX1_ARX	ENST00000510038.1|H2AFY|ENSG00000113648.12|H2A histone family, member Y 	ENST00000304332.4|H2AFY|ENSG00000113648.12|H2A histone family, member Y
hg19_v2_chr5_-_27038683_27038700	0.00327933	ALX1_ARX	ENST00000511822.1|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin) 	ENST00000231021.4|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin)
