hg19_v2_chr10_-_69597810_69597827	1.46889	BRCA1	ENST00000483798.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr17_+_74372662_74372742	1.42796	BRCA1	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr15_-_58358607_58358621	1.30826	BRCA1	ENST00000249750.4|ALDH1A2|ENSG00000128918.10|aldehyde dehydrogenase 1 family, member A2
hg19_v2_chr14_+_103058948_103059005	1.02953	BRCA1	ENST00000262241.6|RCOR1|ENSG00000089902.8|REST corepressor 1
hg19_v2_chr7_-_23510086_23510118	0.960247	BRCA1	ENST00000258729.3|IGF2BP3|ENSG00000136231.9|insulin-like growth factor 2 mRNA binding protein 3
hg19_v2_chr6_+_16129308_16129402	0.866872	BRCA1	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chr3_+_193853927_193853944	0.850412	BRCA1	ENST00000232424.3|HES1|ENSG00000114315.3|hes family bHLH transcription factor 1
hg19_v2_chr18_+_55888767_55888809	0.695287	BRCA1	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr17_-_56296580_56296666	0.686517	BRCA1	ENST00000313863.6|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000546108.1|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000337050.7|MKS1|ENSG00000011143.12|Meckel syndrome, type 1 	ENST00000393119.2|MKS1|ENSG00000011143.12|Meckel syndrome, type 1
hg19_v2_chr4_-_140005443_140005650	0.563116	BRCA1	ENST00000510408.1|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000420916.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000358635.3|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr6_+_33172407_33172419	0.51681	BRCA1	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr1_+_10271674_10271674	0.503961	BRCA1	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr10_-_36813162_36813162	0.495569	BRCA1	ENST00000440465.1|NAMPTL|ENSG00000229644.4|nicotinamide phosphoribosyltransferase-like
hg19_v2_chr6_+_42981922_42982047	0.489743	BRCA1	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr11_+_117947724_117947753	0.474694	BRCA1	ENST00000534111.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4
hg19_v2_chr17_-_7082861_7082883	0.452051	BRCA1	ENST00000269299.3|ASGR1|ENSG00000141505.7|asialoglycoprotein receptor 1
hg19_v2_chr11_+_117947782_117947845	0.410902	BRCA1	ENST00000522307.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000523251.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000437212.3|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000522824.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4 	ENST00000522151.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4
hg19_v2_chr10_+_28822636_28822692	0.410897	BRCA1	ENST00000442148.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil 	ENST00000448193.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil
hg19_v2_chr3_+_185303962_185304021	0.407054	BRCA1	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr3_-_176914238_176914277	0.387548	BRCA1	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr7_+_73868439_73868450	0.358892	BRCA1	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr20_-_48530230_48530276	0.352622	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr20_+_52105495_52105495	0.331154	BRCA1	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr8_+_22022800_22022869	0.330954	BRCA1	ENST00000397814.3|BMP1|ENSG00000168487.13|bone morphogenetic protein 1
hg19_v2_chr12_-_12491608_12491640	0.325686	BRCA1	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr1_+_159141397_159141549	0.321473	BRCA1	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr17_-_41738931_41739040	0.315616	BRCA1	ENST00000329168.3|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000549132.1|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr17_-_60142609_60142657	0.314827	BRCA1	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr11_+_47291645_47291727	0.307307	BRCA1	ENST00000395336.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402192.2|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr6_+_123100620_123100763	0.295415	BRCA1	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr5_-_68665084_68665143	0.283423	BRCA1	ENST00000509462.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr8_-_81083341_81083435	0.280785	BRCA1	ENST00000519303.2|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr11_-_6817128_6817128	0.279315	BRCA1	ENST00000332601.3|OR6A2|ENSG00000184933.3|olfactory receptor, family 6, subfamily A, member 2
hg19_v2_chrX_+_49644470_49644470	0.273228	BRCA1	ENST00000508866.2|USP27X|ENSG00000242013.4|ubiquitin specific peptidase 27, X-linked
hg19_v2_chr17_-_41739283_41739322	0.267362	BRCA1	ENST00000393661.2|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000318579.4|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr10_-_61900762_61900779	0.264114	BRCA1	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr19_-_48389651_48389656	0.262808	BRCA1	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr5_-_68665296_68665381	0.250317	BRCA1	ENST00000512152.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000503245.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000512561.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000380822.4|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr13_-_31038370_31038509	0.249205	BRCA1	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr19_+_46850320_46850365	0.246993	BRCA1	ENST00000391919.1|PPP5C|ENSG00000011485.10|protein phosphatase 5, catalytic subunit
hg19_v2_chr1_-_173020056_173020103	0.244551	BRCA1	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr2_-_152118352_152118393	0.228282	BRCA1	ENST00000331426.5|RBM43|ENSG00000184898.6|RNA binding motif protein 43
hg19_v2_chr19_+_46850251_46850285	0.221574	BRCA1	ENST00000012443.4|PPP5C|ENSG00000011485.10|protein phosphatase 5, catalytic subunit
hg19_v2_chr18_-_23671139_23671190	0.20621	BRCA1	ENST00000579061.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000542420.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr1_-_217250231_217250349	0.203686	BRCA1	ENST00000493748.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000463665.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr15_-_88799948_88799978	0.196649	BRCA1	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr11_+_47291193_47291267	0.192547	BRCA1	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr14_-_69261310_69261453	0.188791	BRCA1	ENST00000336440.3|ZFP36L1|ENSG00000185650.8|ZFP36 ring finger protein-like 1
hg19_v2_chr5_+_139493665_139493718	0.184265	BRCA1	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr1_-_227505289_227505415	0.183182	BRCA1	ENST00000366765.3|CDC42BPA|ENSG00000143776.14|CDC42 binding protein kinase alpha (DMPK-like)
hg19_v2_chr6_-_170862322_170862429	0.173481	BRCA1	ENST00000262193.6|PSMB1|ENSG00000008018.8|proteasome (prosome, macropain) subunit, beta type, 1
hg19_v2_chr12_-_67072714_67072925	0.170701	BRCA1	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr5_-_68665469_68665490	0.160711	BRCA1	ENST00000217893.5|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr9_-_86593238_86593367	0.144576	BRCA1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr1_-_160232312_160232323	0.131846	BRCA1	ENST00000440682.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr11_-_119234876_119234929	0.131736	BRCA1	ENST00000525735.1|USP2|ENSG00000036672.11|ubiquitin specific peptidase 2
hg19_v2_chr2_+_203879568_203879611	0.124445	BRCA1	ENST00000449802.1|NBEAL1|ENSG00000144426.14|neurobeachin-like 1
hg19_v2_chr4_+_619386_619407	0.123724	BRCA1	ENST00000496514.1|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr14_-_60097297_60097403	0.110694	BRCA1	ENST00000395090.1|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr12_-_117319236_117319252	0.110554	BRCA1	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr10_+_92631709_92631746	0.108829	BRCA1	ENST00000413330.1|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit 	ENST00000277882.3|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit
hg19_v2_chr14_+_32030582_32030661	0.108132	BRCA1	ENST00000550649.1|NUBPL|ENSG00000151413.12|nucleotide binding protein-like 	ENST00000281081.7|NUBPL|ENSG00000151413.12|nucleotide binding protein-like
hg19_v2_chr11_-_71823266_71823325	0.102884	BRCA1	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr19_+_45394477_45394546	0.082147	BRCA1	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chr6_-_25832254_25832287	0.0762947	BRCA1	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr8_-_16859690_16859861	0.0755415	BRCA1	ENST00000180166.5|FGF20|ENSG00000078579.8|fibroblast growth factor 20
hg19_v2_chr19_-_40324767_40324841	0.064492	BRCA1	ENST00000601972.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000430012.2|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000323039.5|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000348817.3|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr4_+_619347_619382	0.0472193	BRCA1	ENST00000255622.6|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr16_-_790982_791014	0.0439498	BRCA1	ENST00000301694.5|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like 	ENST00000251588.2|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like
hg19_v2_chr19_+_45971246_45971265	0.0426002	BRCA1	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr5_+_140186647_140186773	0.0376347	BRCA1	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr12_-_49418407_49418407	0.0289736	BRCA1	ENST00000526209.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr1_-_160232197_160232284	0.0283287	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000610139.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000475733.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000407642.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000368073.3|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000326837.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr13_+_30002741_30002776	0.0217882	BRCA1	ENST00000380808.2|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr6_-_42981651_42981706	0.0211601	BRCA1	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr14_-_60097524_60097538	0.0175864	BRCA1	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr17_+_36908984_36909052	0.012495	BRCA1	ENST00000225426.4|PSMB3|ENSG00000108294.4|proteasome (prosome, macropain) subunit, beta type, 3 	ENST00000579088.1|PSMB3|ENSG00000108294.4|proteasome (prosome, macropain) subunit, beta type, 3
hg19_v2_chr1_+_161736072_161736093	0.00746625	BRCA1	ENST00000367942.3|ATF6|ENSG00000118217.5|activating transcription factor 6
hg19_v2_chrX_+_10124977_10125036	0.00232032	BRCA1	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
