hg19_v2_chr5_-_136834982_136835037	0.342478	CUACAGU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr15_+_39873268_39873294	0.314731	CUACAGU	ENST00000397591.2|THBS1|ENSG00000137801.9|thrombospondin 1 	ENST00000260356.5|THBS1|ENSG00000137801.9|thrombospondin 1
hg19_v2_chr3_+_159557637_159557650	0.23542	CUACAGU	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr3_+_158991025_158991083	0.230738	CUACAGU	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr10_+_31608054_31608156	0.172994	CUACAGU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr3_-_114790179_114790222	0.153797	CUACAGU	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr1_-_225840747_225840860	0.153613	CUACAGU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr4_-_99579733_99579789	0.125393	CUACAGU	ENST00000305798.3|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr9_-_14314066_14314075	0.122618	CUACAGU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr5_-_127873659_127873735	0.122524	CUACAGU	ENST00000262464.4|FBN2|ENSG00000138829.6|fibrillin 2
hg19_v2_chr16_+_58497567_58497586	0.111685	CUACAGU	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr8_-_67525473_67525518	0.109534	CUACAGU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr3_-_123603137_123603203	0.108416	CUACAGU	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr16_-_10674528_10674555	0.0953954	CUACAGU	ENST00000359543.3|EMP2|ENSG00000213853.5|epithelial membrane protein 2
hg19_v2_chr5_+_15500280_15500312	0.0945146	CUACAGU	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr12_+_26348429_26348525	0.0942296	CUACAGU	ENST00000242729.2|SSPN|ENSG00000123096.7|sarcospan
hg19_v2_chr18_-_53255766_53255860	0.0889094	CUACAGU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr10_-_735553_735683	0.074147	CUACAGU	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr3_-_124774802_124774852	0.0723273	CUACAGU	ENST00000311127.4|HEG1|ENSG00000173706.8|heart development protein with EGF-like domains 1
hg19_v2_chr18_+_3451646_3451722	0.0715971	CUACAGU	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr1_-_21671968_21672009	0.0664385	CUACAGU	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr15_-_77363513_77363570	0.0644891	CUACAGU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr5_-_59189545_59189625	0.0643783	CUACAGU	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr10_-_70287231_70287290	0.0587852	CUACAGU	ENST00000609923.1|SLC25A16|ENSG00000122912.10|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
hg19_v2_chr20_-_48099182_48099214	0.0573639	CUACAGU	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr1_-_59249732_59249785	0.0439719	CUACAGU	ENST00000371222.2|JUN|ENSG00000177606.5|jun proto-oncogene
hg19_v2_chr3_-_98620500_98620547	0.0400056	CUACAGU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr2_-_208030647_208030689	0.038348	CUACAGU	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr16_+_57662419_57662526	0.0332683	CUACAGU	ENST00000388812.4|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000538815.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000456916.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000567154.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000388813.5|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562558.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566271.2|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr11_+_129939779_129939801	0.0296965	CUACAGU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr12_+_123237321_123237407	0.025142	CUACAGU	ENST00000280557.6|DENR|ENSG00000139726.6|density-regulated protein 	ENST00000455982.2|DENR|ENSG00000139726.6|density-regulated protein
hg19_v2_chrX_-_77041685_77041716	0.024951	CUACAGU	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr4_+_77870856_77870919	0.0243865	CUACAGU	ENST00000264893.6|SEPT11|ENSG00000138758.7|septin 11 	ENST00000502584.1|SEPT11|ENSG00000138758.7|septin 11 	ENST00000510641.1|SEPT11|ENSG00000138758.7|septin 11
hg19_v2_chr8_-_105601134_105601252	0.0214278	CUACAGU	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr9_+_77112244_77112281	0.0214246	CUACAGU	ENST00000376896.3|RORB|ENSG00000198963.6|RAR-related orphan receptor B
hg19_v2_chr6_+_4021554_4021656	0.0200904	CUACAGU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr2_-_160472952_160473080	0.019324	CUACAGU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chrX_+_16804544_16804613	0.0191922	CUACAGU	ENST00000380122.5|TXLNG|ENSG00000086712.8|taxilin gamma 	ENST00000398155.4|TXLNG|ENSG00000086712.8|taxilin gamma
hg19_v2_chr3_-_160283348_160283376	0.0185907	CUACAGU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr11_-_95657231_95657459	0.0178603	CUACAGU	ENST00000409459.1|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000352297.7|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000393223.3|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000346299.5|MTMR2|ENSG00000087053.14|myotubularin related protein 2
hg19_v2_chr21_-_36260980_36261011	0.0150682	CUACAGU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr2_+_181845298_181845378	0.0142011	CUACAGU	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr7_-_115670792_115670798	0.0113175	CUACAGU	ENST00000265440.7|TFEC|ENSG00000105967.11|transcription factor EC 	ENST00000393485.1|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr10_+_82213904_82213922	0.0110969	CUACAGU	ENST00000429989.3|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr5_-_114598548_114598579	0.010921	CUACAGU	ENST00000379615.3|PGGT1B|ENSG00000164219.5|protein geranylgeranyltransferase type I, beta subunit 	ENST00000419445.1|PGGT1B|ENSG00000164219.5|protein geranylgeranyltransferase type I, beta subunit
hg19_v2_chr6_-_8064567_8064652	0.0104564	CUACAGU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr15_-_79383102_79383127	0.00847298	CUACAGU	ENST00000558480.2|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1 	ENST00000419573.3|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1
hg19_v2_chr1_-_85156216_85156240	0.00802986	CUACAGU	ENST00000342203.3|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein 	ENST00000370612.4|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr1_-_1822495_1822571	0.00713953	CUACAGU	ENST00000378609.4|GNB1|ENSG00000078369.13|guanine nucleotide binding protein (G protein), beta polypeptide 1
hg19_v2_chr10_-_99393242_99393344	0.00619062	CUACAGU	ENST00000370635.3|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000478953.1|MORN4|ENSG00000171160.13|MORN repeat containing 4 	ENST00000335628.3|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr7_+_77325738_77325789	0.00566192	CUACAGU	ENST00000334955.8|RSBN1L|ENSG00000187257.10|round spermatid basic protein 1-like
hg19_v2_chr18_+_55018044_55018044	0.00499712	CUACAGU	ENST00000324000.3|ST8SIA3|ENSG00000177511.5|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
hg19_v2_chr1_-_156721502_156721536	0.00491735	CUACAGU	ENST00000357325.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr12_+_123868320_123868320	0.00293563	CUACAGU	ENST00000402868.3|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8 	ENST00000330479.4|SETD8|ENSG00000183955.8|SET domain containing (lysine methyltransferase) 8
hg19_v2_chr14_+_50359773_50359850	0.00259974	CUACAGU	ENST00000298316.5|ARF6|ENSG00000165527.5|ADP-ribosylation factor 6
hg19_v2_chr3_-_116164306_116164380	0.00257312	CUACAGU	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr5_-_114961858_114961876	0.00235595	CUACAGU	ENST00000282382.4|TMED7-TICAM2|ENSG00000251201.4|TMED7-TICAM2 readthrough 	ENST00000456936.3|TMED7|ENSG00000134970.13|transmembrane emp24 protein transport domain containing 7 	ENST00000408996.4|TICAM2|ENSG00000243414.4|toll-like receptor adaptor molecule 2
hg19_v2_chr4_-_24586140_24586188	0.00215685	CUACAGU	ENST00000336812.4|DHX15|ENSG00000109606.8|DEAH (Asp-Glu-Ala-His) box helicase 15
hg19_v2_chr17_+_64298944_64298944	0.000808113	CUACAGU	ENST00000413366.3|PRKCA|ENSG00000154229.7|protein kinase C, alpha
hg19_v2_chr19_+_10527449_10527619	0.000333247	CUACAGU	ENST00000592685.1|PDE4A|ENSG00000065989.11|phosphodiesterase 4A, cAMP-specific 	ENST00000380702.2|PDE4A|ENSG00000065989.11|phosphodiesterase 4A, cAMP-specific
hg19_v2_chr15_+_57210818_57210930	0.000214205	CUACAGU	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr1_-_149982624_149982719	0.000172652	CUACAGU	ENST00000417191.1|OTUD7B|ENSG00000163113.10|OTU domain containing 7B 	ENST00000369135.4|OTUD7B|ENSG00000163113.10|OTU domain containing 7B
