hg19_v2_chr11_-_116708302_116708347	4.42137	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr17_+_79953310_79953319	4.22846	FOXA3_FOXC2	ENST00000582355.2|ASPSCR1|ENSG00000169696.11|alveolar soft part sarcoma chromosome region, candidate 1
hg19_v2_chr17_-_26694979_26695007	3.71299	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr17_-_26695013_26695033	3.68344	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr6_-_41715128_41715142	3.62207	FOXA3_FOXC2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr1_-_169555779_169555826	2.91147	FOXA3_FOXC2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr17_+_72426891_72427052	2.87346	FOXA3_FOXC2	ENST00000392627.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr2_+_128175997_128176020	2.5007	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr2_-_21266935_21266951	2.44208	FOXA3_FOXC2	ENST00000233242.1|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr8_+_97597148_97597173	2.34735	FOXA3_FOXC2	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr14_+_21156915_21156943	2.01813	FOXA3_FOXC2	ENST00000397990.4|ANG|ENSG00000214274.5|angiogenin, ribonuclease, RNase A family, 5 	ENST00000555597.1|RNASE4|ENSG00000258818.2|ribonuclease, RNase A family, 4
hg19_v2_chr22_+_21128167_21128167	1.92924	FOXA3_FOXC2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr4_+_74269956_74270025	1.87576	FOXA3_FOXC2	ENST00000295897.4|ALB|ENSG00000163631.12|albumin 	ENST00000415165.2|ALB|ENSG00000163631.12|albumin 	ENST00000503124.1|ALB|ENSG00000163631.12|albumin 	ENST00000509063.1|ALB|ENSG00000163631.12|albumin 	ENST00000401494.3|ALB|ENSG00000163631.12|albumin
hg19_v2_chr2_+_58655461_58655492	1.70038	FOXA3_FOXC2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr14_-_94789663_94789731	1.67775	FOXA3_FOXC2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chr1_-_146696901_146696974	1.31432	FOXA3_FOXC2	ENST00000369272.3|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5 	ENST00000441068.2|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5
hg19_v2_chr14_-_25479811_25479846	1.23923	FOXA3_FOXC2	ENST00000550887.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr18_-_25616519_25616549	1.1295	FOXA3_FOXC2	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr17_-_39684550_39684567	1.0429	FOXA3_FOXC2	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr4_-_70080449_70080449	0.989377	FOXA3_FOXC2	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chrX_+_9431324_9431371	0.965075	FOXA3_FOXC2	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr7_+_134832808_134832879	0.939228	FOXA3_FOXC2	ENST00000275767.3|TMEM140|ENSG00000146859.6|transmembrane protein 140
hg19_v2_chr17_+_72427477_72427667	0.932858	FOXA3_FOXC2	ENST00000342648.5|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C 	ENST00000481232.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr1_-_57431679_57431810	0.788629	FOXA3_FOXC2	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr11_-_115375107_115375283	0.777267	FOXA3_FOXC2	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chrX_-_20236970_20237027	0.747668	FOXA3_FOXC2	ENST00000379548.4|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr4_+_187187098_187187127	0.733469	FOXA3_FOXC2	ENST00000403665.2|F11|ENSG00000088926.9|coagulation factor XI 	ENST00000264692.4|F11|ENSG00000088926.9|coagulation factor XI
hg19_v2_chr14_-_38064198_38064239	0.68617	FOXA3_FOXC2	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr7_-_107643674_107643700	0.679295	FOXA3_FOXC2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr1_+_207277590_207277620	0.670806	FOXA3_FOXC2	ENST00000367070.3|C4BPA|ENSG00000123838.6|complement component 4 binding protein, alpha
hg19_v2_chr9_-_75567962_75567979	0.661335	FOXA3_FOXC2	ENST00000297785.3|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1 	ENST00000376939.1|ALDH1A1|ENSG00000165092.8|aldehyde dehydrogenase 1 family, member A1
hg19_v2_chr7_-_22259845_22259864	0.645732	FOXA3_FOXC2	ENST00000420196.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr16_-_87970122_87970122	0.644746	FOXA3_FOXC2	ENST00000309893.2|CA5A|ENSG00000174990.3|carbonic anhydrase VA, mitochondrial
hg19_v2_chr4_+_79567314_79567348	0.63479	FOXA3_FOXC2	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr18_-_52626622_52626739	0.630508	FOXA3_FOXC2	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr17_-_26697304_26697373	0.612176	FOXA3_FOXC2	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr2_+_220042933_220042985	0.574064	FOXA3_FOXC2	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr20_+_44519948_44519986	0.573418	FOXA3_FOXC2	ENST00000354880.5|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000191018.5|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr4_+_79567362_79567380	0.572471	FOXA3_FOXC2	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr20_+_44520009_44520020	0.554324	FOXA3_FOXC2	ENST00000607482.1|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000372459.2|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr21_-_43786634_43786703	0.543308	FOXA3_FOXC2	ENST00000291527.2|TFF1|ENSG00000160182.2|trefoil factor 1
hg19_v2_chr20_+_45338126_45338303	0.534381	FOXA3_FOXC2	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr14_+_74034310_74034345	0.532117	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr4_-_186696425_186696452	0.505947	FOXA3_FOXC2	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr6_+_10528560_10528589	0.495716	FOXA3_FOXC2	ENST00000379597.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr3_-_99833333_99833357	0.472512	FOXA3_FOXC2	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr16_-_15474904_15474904	0.471581	FOXA3_FOXC2	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr16_+_14802801_14802801	0.46742	FOXA3_FOXC2	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr17_+_4613776_4613792	0.443719	FOXA3_FOXC2	ENST00000269260.2|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr5_+_156712372_156712440	0.441914	FOXA3_FOXC2	ENST00000541131.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr1_+_73771844_73771922	0.422922	FOXA3_FOXC2	ENST00000440762.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000444827.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000415686.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000411903.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1
hg19_v2_chr19_+_782755_782833	0.408417	FOXA3_FOXC2	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr17_+_4613918_4614000	0.400891	FOXA3_FOXC2	ENST00000574954.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000346341.2|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000572457.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000381488.6|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000412477.3|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000571428.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000575877.1|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chrX_+_23352133_23352229	0.400021	FOXA3_FOXC2	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr10_-_63995871_63996022	0.386358	FOXA3_FOXC2	ENST00000315289.2|RTKN2|ENSG00000182010.6|rhotekin 2
hg19_v2_chr20_+_11898507_11898565	0.369766	FOXA3_FOXC2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr7_+_112063192_112063237	0.358209	FOXA3_FOXC2	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr12_+_120740119_120740124	0.352146	FOXA3_FOXC2	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr17_+_74372662_74372742	0.328613	FOXA3_FOXC2	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr19_+_15160130_15160195	0.314287	FOXA3_FOXC2	ENST00000427043.3|CASP14|ENSG00000105141.4|caspase 14, apoptosis-related cysteine peptidase
hg19_v2_chr14_-_74551096_74551171	0.31082	FOXA3_FOXC2	ENST00000350259.4|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr2_-_165424973_165425010	0.310248	FOXA3_FOXC2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr1_-_151431909_151431987	0.309291	FOXA3_FOXC2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr20_-_43150601_43150751	0.30816	FOXA3_FOXC2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr1_+_114471972_114472000	0.306503	FOXA3_FOXC2	ENST00000369559.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369554.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr14_-_74551172_74551196	0.301008	FOXA3_FOXC2	ENST00000553458.1|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr3_-_114343039_114343085	0.300432	FOXA3_FOXC2	ENST00000481632.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr20_+_44035200_44035288	0.281307	FOXA3_FOXC2	ENST00000372717.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENST00000360981.4|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr11_-_46615498_46615675	0.279765	FOXA3_FOXC2	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr1_+_114471809_114471855	0.272936	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr4_-_140223670_140223705	0.270424	FOXA3_FOXC2	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr7_+_73242490_73242532	0.265528	FOXA3_FOXC2	ENST00000431918.1|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr1_-_151431647_151431669	0.264389	FOXA3_FOXC2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr14_+_23299088_23299258	0.254809	FOXA3_FOXC2	ENST00000355151.5|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397496.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555345.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000432849.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000553711.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556465.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397505.2|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000557221.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000311892.6|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556840.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555536.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52
hg19_v2_chr2_-_175260368_175260450	0.252788	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chrX_+_107288197_107288212	0.2486	FOXA3_FOXC2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr6_+_158733692_158733692	0.239928	FOXA3_FOXC2	ENST00000367094.2|TULP4|ENSG00000130338.8|tubby like protein 4 	ENST00000367097.3|TULP4|ENSG00000130338.8|tubby like protein 4
hg19_v2_chr3_-_105588231_105588396	0.234664	FOXA3_FOXC2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr2_+_113885138_113885181	0.233244	FOXA3_FOXC2	ENST00000409930.3|IL1RN|ENSG00000136689.14|interleukin 1 receptor antagonist
hg19_v2_chr17_-_202579_202633	0.227558	FOXA3_FOXC2	ENST00000577079.1|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000331302.7|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000536489.2|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains)
hg19_v2_chr4_-_140223614_140223668	0.218234	FOXA3_FOXC2	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr7_+_138943265_138943265	0.213663	FOXA3_FOXC2	ENST00000483726.1|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr5_-_115872142_115872154	0.21155	FOXA3_FOXC2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr10_-_73848086_73848099	0.210997	FOXA3_FOXC2	ENST00000536168.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr12_+_58087901_58087947	0.210311	FOXA3_FOXC2	ENST00000315970.7|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000547079.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000439210.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389146.6|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000413095.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000551035.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000257966.8|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000435406.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000550372.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389142.5|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr20_+_44035847_44035879	0.206298	FOXA3_FOXC2	ENST00000372712.2|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr5_-_98262240_98262240	0.206145	FOXA3_FOXC2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chrX_+_107288239_107288259	0.200461	FOXA3_FOXC2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr6_-_122792919_122792970	0.194576	FOXA3_FOXC2	ENST00000339697.4|SERINC1|ENSG00000111897.6|serine incorporator 1
hg19_v2_chr2_-_65593784_65593817	0.186892	FOXA3_FOXC2	ENST00000443619.2|SPRED2|ENSG00000198369.5|sprouty-related, EVH1 domain containing 2
hg19_v2_chr8_-_28243934_28243993	0.185553	FOXA3_FOXC2	ENST00000521185.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000520290.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000344423.5|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr7_+_134576317_134576374	0.185112	FOXA3_FOXC2	ENST00000424922.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000495522.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr16_+_77233294_77233341	0.178954	FOXA3_FOXC2	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr3_+_142315225_142315290	0.173669	FOXA3_FOXC2	ENST00000457734.2|PLS1|ENSG00000120756.8|plastin 1 	ENST00000483373.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000475296.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000495744.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000476044.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000461644.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr7_+_28452130_28452154	0.172426	FOXA3_FOXC2	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr10_-_46030841_46030846	0.169772	FOXA3_FOXC2	ENST00000453424.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr12_-_71551652_71551679	0.167715	FOXA3_FOXC2	ENST00000546561.1|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr1_+_29563011_29563151	0.163341	FOXA3_FOXC2	ENST00000345512.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000373779.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000356870.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000323874.8|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000428026.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000460170.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U
hg19_v2_chr1_-_150669604_150669643	0.162673	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr14_-_31926701_31926734	0.159496	FOXA3_FOXC2	ENST00000310850.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr12_+_59989791_59989874	0.158638	FOXA3_FOXC2	ENST00000552432.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr16_-_86542455_86542500	0.157074	FOXA3_FOXC2	ENST00000595886.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000597578.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000593604.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr19_-_46088068_46088100	0.154286	FOXA3_FOXC2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr19_+_47421933_47421933	0.150229	FOXA3_FOXC2	ENST00000404338.3|ARHGAP35|ENSG00000160007.13|Rho GTPase activating protein 35
hg19_v2_chr7_-_121784285_121784350	0.148965	FOXA3_FOXC2	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chr7_-_25268104_25268106	0.14853	FOXA3_FOXC2	ENST00000222674.2|NPVF|ENSG00000105954.2|neuropeptide VF precursor
hg19_v2_chr4_+_184365744_184365797	0.145996	FOXA3_FOXC2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr1_-_152332480_152332484	0.145594	FOXA3_FOXC2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr1_+_154540246_154540260	0.144316	FOXA3_FOXC2	ENST00000368476.3|CHRNB2|ENSG00000160716.4|cholinergic receptor, nicotinic, beta 2 (neuronal)
hg19_v2_chr14_+_20811722_20811741	0.142487	FOXA3_FOXC2	ENST00000429687.3|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr16_+_20775358_20775386	0.132679	FOXA3_FOXC2	ENST00000440284.2|ACSM3|ENSG00000005187.7|acyl-CoA synthetase medium-chain family member 3
hg19_v2_chr6_-_25830785_25830844	0.129175	FOXA3_FOXC2	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr1_-_223308098_223308225	0.128868	FOXA3_FOXC2	ENST00000342210.6|TLR5|ENSG00000187554.7|toll-like receptor 5
hg19_v2_chr7_+_134430212_134430237	0.128765	FOXA3_FOXC2	ENST00000436461.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr12_+_72080253_72080293	0.125401	FOXA3_FOXC2	ENST00000549735.1|TMEM19|ENSG00000139291.9|transmembrane protein 19
hg19_v2_chr14_+_20811766_20811801	0.124028	FOXA3_FOXC2	ENST00000250416.5|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2 	ENST00000527915.1|PARP2|ENSG00000129484.9|poly (ADP-ribose) polymerase 2
hg19_v2_chr7_-_107443652_107443675	0.123927	FOXA3_FOXC2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr4_+_118955500_118955612	0.123839	FOXA3_FOXC2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr7_+_95115210_95115217	0.121636	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr6_-_13621126_13621126	0.118852	FOXA3_FOXC2	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr3_-_186080012_186080030	0.118328	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr10_+_123923105_123923160	0.115841	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr8_+_67579807_67579887	0.115474	FOXA3_FOXC2	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr19_-_15443318_15443373	0.111971	FOXA3_FOXC2	ENST00000360016.5|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr11_-_82708519_82708523	0.111365	FOXA3_FOXC2	ENST00000534301.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr6_-_26056695_26056701	0.109675	FOXA3_FOXC2	ENST00000343677.2|HIST1H1C|ENSG00000187837.2|histone cluster 1, H1c
hg19_v2_chrX_+_65382381_65382392	0.102012	FOXA3_FOXC2	ENST00000519389.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr2_+_136343820_136343897	0.101741	FOXA3_FOXC2	ENST00000410054.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr6_+_108882069_108882087	0.101136	FOXA3_FOXC2	ENST00000406360.1|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr1_-_28384598_28384680	0.1002	FOXA3_FOXC2	ENST00000373864.1|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr2_-_183291741_183291771	0.099585	FOXA3_FOXC2	ENST00000351439.5|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent 	ENST00000409365.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr6_+_44355257_44355315	0.0989446	FOXA3_FOXC2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chrX_+_24167746_24167811	0.0985195	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr3_+_171561127_171561306	0.0966688	FOXA3_FOXC2	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr5_-_58571935_58571951	0.094611	FOXA3_FOXC2	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr8_-_120651020_120651091	0.0939511	FOXA3_FOXC2	ENST00000522826.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000520066.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000259486.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000075322.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chr2_+_28974603_28974617	0.0917721	FOXA3_FOXC2	ENST00000441461.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000358506.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr16_+_69958887_69958927	0.0875186	FOXA3_FOXC2	ENST00000568684.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr4_+_88720698_88720733	0.0873629	FOXA3_FOXC2	ENST00000226284.5|IBSP|ENSG00000029559.5|integrin-binding sialoprotein
hg19_v2_chr7_+_106505696_106505798	0.0868417	FOXA3_FOXC2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr15_-_66797172_66797221	0.0868271	FOXA3_FOXC2	ENST00000569438.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000569696.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000307961.6|RPL4|ENSG00000174444.10|ribosomal protein L4
hg19_v2_chr1_+_87797351_87797441	0.0860565	FOXA3_FOXC2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr3_+_141106643_141106681	0.0855198	FOXA3_FOXC2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr8_-_80993010_80993073	0.0836137	FOXA3_FOXC2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr1_+_150488205_150488251	0.0814627	FOXA3_FOXC2	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr6_-_49755019_49755053	0.0806913	FOXA3_FOXC2	ENST00000304801.3|PGK2|ENSG00000170950.3|phosphoglycerate kinase 2
hg19_v2_chr16_+_67381263_67381284	0.0778535	FOXA3_FOXC2	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr1_+_18958008_18958023	0.0770193	FOXA3_FOXC2	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr8_+_19171128_19171182	0.0769641	FOXA3_FOXC2	ENST00000265807.3|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr5_-_24645078_24645096	0.0769574	FOXA3_FOXC2	ENST00000264463.4|CDH10|ENSG00000040731.6|cadherin 10, type 2 (T2-cadherin)
hg19_v2_chr4_-_116034979_116035046	0.0768156	FOXA3_FOXC2	ENST00000264363.2|NDST4|ENSG00000138653.5|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
hg19_v2_chr14_+_37126765_37126799	0.0757879	FOXA3_FOXC2	ENST00000402703.2|PAX9|ENSG00000198807.8|paired box 9
hg19_v2_chr6_+_161123270_161123278	0.0751313	FOXA3_FOXC2	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr2_-_86422523_86422595	0.0731504	FOXA3_FOXC2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chrX_+_24167828_24167907	0.0730858	FOXA3_FOXC2	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr1_+_18957500_18957623	0.0712438	FOXA3_FOXC2	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chrX_+_99839799_99839938	0.0671114	FOXA3_FOXC2	ENST00000373031.4|TNMD|ENSG00000000005.5|tenomodulin
hg19_v2_chr3_+_148447887_148447911	0.0663653	FOXA3_FOXC2	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr3_-_113897899_113897899	0.0661718	FOXA3_FOXC2	ENST00000383673.2|DRD3|ENSG00000151577.8|dopamine receptor D3 	ENST00000295881.7|DRD3|ENSG00000151577.8|dopamine receptor D3
hg19_v2_chr11_-_82708435_82708472	0.0643101	FOXA3_FOXC2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr3_+_137728842_137728952	0.0616192	FOXA3_FOXC2	ENST00000183605.5|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr3_+_35721106_35721127	0.0591622	FOXA3_FOXC2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr9_-_95186739_95186763	0.0582918	FOXA3_FOXC2	ENST00000375550.4|OMD|ENSG00000127083.7|osteomodulin
hg19_v2_chr5_+_74807886_74807926	0.0580143	FOXA3_FOXC2	ENST00000514296.1|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr5_+_161494770_161494787	0.0574543	FOXA3_FOXC2	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr19_+_41257084_41257125	0.0568065	FOXA3_FOXC2	ENST00000601393.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr2_+_162272605_162272753	0.0561896	FOXA3_FOXC2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr21_-_36259445_36259519	0.0554714	FOXA3_FOXC2	ENST00000399240.1|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr7_+_134576151_134576171	0.0554402	FOXA3_FOXC2	ENST00000393118.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr13_-_36429763_36429779	0.0543472	FOXA3_FOXC2	ENST00000379893.1|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1
hg19_v2_chr18_-_31803169_31803169	0.0538659	FOXA3_FOXC2	ENST00000590712.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr6_-_24666819_24666974	0.0532038	FOXA3_FOXC2	ENST00000341060.3|TDP2|ENSG00000111802.9|tyrosyl-DNA phosphodiesterase 2
hg19_v2_chr11_-_72070206_72070250	0.0507627	FOXA3_FOXC2	ENST00000544382.1|CLPB|ENSG00000162129.8|ClpB caseinolytic peptidase B homolog (E. coli)
hg19_v2_chr17_-_36358166_36358166	0.0495392	FOXA3_FOXC2	ENST00000537432.1|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr6_+_52051171_52051185	0.0487532	FOXA3_FOXC2	ENST00000340057.1|IL17A|ENSG00000112115.5|interleukin 17A
hg19_v2_chr3_+_148545586_148545609	0.0487283	FOXA3_FOXC2	ENST00000282957.4|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue) 	ENST00000468341.1|CPB1|ENSG00000153002.7|carboxypeptidase B1 (tissue)
hg19_v2_chr7_+_106505912_106505931	0.0486259	FOXA3_FOXC2	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr9_+_131062367_131062367	0.0436591	FOXA3_FOXC2	ENST00000601297.1|AL359091.2|ENSG00000268211.1|CDNA: FLJ21673 fis, clone COL09042; HCG2036511; Uncharacterized protein
hg19_v2_chr12_-_102591604_102591623	0.04262	FOXA3_FOXC2	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr2_+_28974668_28974729	0.0423987	FOXA3_FOXC2	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr1_+_174933899_174933955	0.0399465	FOXA3_FOXC2	ENST00000367688.3|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr16_+_67381289_67381306	0.0393402	FOXA3_FOXC2	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr14_+_56127989_56128008	0.0384056	FOXA3_FOXC2	ENST00000555573.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr14_-_24664540_24664690	0.0357751	FOXA3_FOXC2	ENST00000530563.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528895.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528669.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000532632.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1
hg19_v2_chr8_-_95449155_95449188	0.0340403	FOXA3_FOXC2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr5_-_59481406_59481425	0.0294519	FOXA3_FOXC2	ENST00000546160.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr15_-_40600026_40600061	0.0286356	FOXA3_FOXC2	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr5_+_161495038_161495056	0.0274765	FOXA3_FOXC2	ENST00000393933.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr14_-_36990354_36990397	0.0268358	FOXA3_FOXC2	ENST00000518149.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr4_-_174256276_174256303	0.0262035	FOXA3_FOXC2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr13_+_52598827_52598827	0.0251783	FOXA3_FOXC2	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr8_+_75736761_75736777	0.0251088	FOXA3_FOXC2	ENST00000260113.2|PI15|ENSG00000137558.3|peptidase inhibitor 15
hg19_v2_chr6_+_72922505_72922516	0.0248231	FOXA3_FOXC2	ENST00000401910.3|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr5_+_140787600_140787770	0.0233283	FOXA3_FOXC2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chrX_-_55020511_55020626	0.0230632	FOXA3_FOXC2	ENST00000375006.3|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 	ENST00000374992.2|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr6_+_72922590_72922605	0.0217283	FOXA3_FOXC2	ENST00000523963.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr7_-_81399329_81399347	0.0217201	FOXA3_FOXC2	ENST00000453411.1|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor) 	ENST00000444829.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr6_-_87804815_87804830	0.0179667	FOXA3_FOXC2	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr12_-_53207842_53207907	0.0177724	FOXA3_FOXC2	ENST00000458244.2|KRT4|ENSG00000170477.8|keratin 4
hg19_v2_chr18_+_61575200_61575230	0.0156313	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr18_-_31803435_31803515	0.0143271	FOXA3_FOXC2	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr20_-_1974692_1974732	0.014103	FOXA3_FOXC2	ENST00000217305.2|PDYN|ENSG00000101327.4|prodynorphin 	ENST00000539905.1|PDYN|ENSG00000101327.4|prodynorphin
hg19_v2_chr4_+_71588372_71588404	0.0119842	FOXA3_FOXC2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr17_-_19290483_19290553	0.0119577	FOXA3_FOXC2	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr7_+_116654935_116654949	0.00489172	FOXA3_FOXC2	ENST00000432298.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000422922.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr6_+_168418553_168418581	0.00146939	FOXA3_FOXC2	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
