hg19_v2_chr18_+_21529811_21529857	6.62022	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr1_-_153538292_153538342	4.83891	GLI3	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr1_-_153538011_153538030	4.18063	GLI3	ENST00000368707.4|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr12_-_52887034_52887049	3.93139	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr20_+_62327996_62328021	3.86403	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr17_-_39928106_39928152	3.73905	GLI3	ENST00000540235.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr19_+_35606692_35606769	3.27847	GLI3	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr12_-_52845910_52845938	3.19722	GLI3	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr1_+_183155373_183155423	3.19133	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr12_-_52867569_52867598	3.1383	GLI3	ENST00000252250.6|KRT6C|ENSG00000170465.9|keratin 6C
hg19_v2_chr19_-_51456321_51456332	3.10739	GLI3	ENST00000391809.2|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr19_-_51456344_51456364	3.01891	GLI3	ENST00000336334.3|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5 	ENST00000593428.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr6_+_125540951_125540991	2.88443	GLI3	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr17_+_15848231_15848231	2.67379	GLI3	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr4_-_90758227_90758379	2.32821	GLI3	ENST00000506691.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394986.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000506244.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394989.2|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394991.3|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr8_+_31497271_31497285	2.04856	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr1_+_152956549_152956566	2.01149	GLI3	ENST00000307122.2|SPRR1A|ENSG00000169474.3|small proline-rich protein 1A
hg19_v2_chr20_-_6104191_6104228	1.99493	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr19_-_51456198_51456301	1.92855	GLI3	ENST00000594846.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr16_+_68678739_68678833	1.81416	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chrX_+_152086373_152086414	1.79373	GLI3	ENST00000318529.8|ZNF185|ENSG00000147394.14|zinc finger protein 185 (LIM domain)
hg19_v2_chr11_-_12030629_12030644	1.73324	GLI3	ENST00000396505.2|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3
hg19_v2_chr6_-_46703069_46703081	1.69966	GLI3	ENST00000538237.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 	ENST00000274793.7|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr14_+_94577074_94577161	1.67192	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr4_-_177713788_177713881	1.62113	GLI3	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr16_+_68679193_68679253	1.58545	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr11_+_2415061_2415109	1.55378	GLI3	ENST00000481687.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr19_+_48281842_48281853	1.52801	GLI3	ENST00000509570.2|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr17_+_73750699_73750793	1.51932	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr22_+_31489344_31489371	1.50899	GLI3	ENST00000404574.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr8_-_42065187_42065242	1.50292	GLI3	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr6_-_46703430_46703465	1.45556	GLI3	ENST00000537365.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr11_+_69931519_69931528	1.43904	GLI3	ENST00000316296.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000530676.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr11_-_119991589_119991609	1.35308	GLI3	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr16_+_56598961_56598990	1.32705	GLI3	ENST00000219162.3|MT4|ENSG00000102891.3|metallothionein 4
hg19_v2_chr10_-_126847276_126847294	1.32554	GLI3	ENST00000531469.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr19_-_51522955_51523020	1.30032	GLI3	ENST00000358789.3|KLK10|ENSG00000129451.7|kallikrein-related peptidase 10
hg19_v2_chr8_+_94929168_94929235	1.26101	GLI3	ENST00000518107.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000396200.3|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr7_-_56119156_56119163	1.24839	GLI3	ENST00000421312.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000416592.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr20_+_55204351_55204377	1.22995	GLI3	ENST00000201031.2|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr12_+_6308881_6309041	1.22671	GLI3	ENST00000382518.1|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000536586.1|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr2_+_192109911_192110170	1.21022	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr19_-_12886327_12886434	1.20956	GLI3	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr8_+_94929077_94929106	1.20622	GLI3	ENST00000297598.4|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000520614.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr22_+_31488433_31488454	1.20234	GLI3	ENST00000455608.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr14_-_61748550_61748559	1.18262	GLI3	ENST00000555868.1|TMEM30B|ENSG00000182107.5|transmembrane protein 30B
hg19_v2_chr6_-_105627735_105627917	1.16424	GLI3	ENST00000254765.3|POPDC3|ENSG00000132429.5|popeye domain containing 3
hg19_v2_chr1_+_152881014_152881031	1.15534	GLI3	ENST00000368764.3|IVL|ENSG00000163207.5|involucrin 	ENST00000392667.2|IVL|ENSG00000163207.5|involucrin
hg19_v2_chr8_+_94929110_94929167	1.14674	GLI3	ENST00000520728.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr19_+_48281803_48281829	1.14292	GLI3	ENST00000601048.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr1_+_44399466_44399518	1.13974	GLI3	ENST00000498139.2|ARTN|ENSG00000117407.12|artemin 	ENST00000491846.1|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr4_+_74735102_74735121	1.13667	GLI3	ENST00000395761.3|CXCL1|ENSG00000163739.4|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
hg19_v2_chr16_+_56691606_56691719	1.0568	GLI3	ENST00000334350.6|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr7_-_151511911_151511962	1.05645	GLI3	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr19_+_49713991_49714040	1.05301	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.11|transient receptor potential cation channel, subfamily M, member 4
hg19_v2_chr12_-_8814669_8814767	1.05045	GLI3	ENST00000535411.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000540087.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr19_+_48281946_48281974	1.04066	GLI3	ENST00000595615.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr19_+_41281416_41281452	1.03796	GLI3	ENST00000597140.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr17_-_7307358_7307456	0.995662	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr2_+_234637754_234637773	0.963348	GLI3	ENST00000482026.1|UGT1A3|ENSG00000243135.1|UDP glucuronosyltransferase 1 family, polypeptide A3 	ENST00000609767.1|UGT1A1|ENSG00000241635.3|UDP glucuronosyltransferase 1 family, polypeptide A8
hg19_v2_chr21_-_45079341_45079400	0.961454	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chr2_+_192110199_192110254	0.961164	GLI3	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr2_-_85636928_85636955	0.945117	GLI3	ENST00000449030.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr19_+_48281928_48281939	0.941657	GLI3	ENST00000593892.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr19_-_19051993_19052073	0.932134	GLI3	ENST00000594794.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000355887.6|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000392351.3|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000596482.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr1_+_35220613_35220718	0.91092	GLI3	ENST00000338513.1|GJB5|ENSG00000189280.3|gap junction protein, beta 5, 31.1kDa
hg19_v2_chr16_+_56691838_56691862	0.895119	GLI3	ENST00000394501.2|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr16_+_68771128_68771255	0.877633	GLI3	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr2_+_235860616_235860645	0.871568	GLI3	ENST00000392011.2|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr1_-_43833628_43833703	0.862977	GLI3	ENST00000413844.2|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1 	ENST00000372458.3|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1
hg19_v2_chr3_+_44626446_44626477	0.861194	GLI3	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr3_-_43663519_43663560	0.861044	GLI3	ENST00000427171.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000292246.3|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr19_+_41281060_41281169	0.859523	GLI3	ENST00000594436.1|MIA|ENSG00000261857.2|melanoma inhibitory activity 	ENST00000597784.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr16_+_57653854_57653968	0.848107	GLI3	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr12_-_54813229_54813273	0.818047	GLI3	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr19_+_41281282_41281363	0.813685	GLI3	ENST00000263369.3|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr2_-_24308051_24308085	0.803199	GLI3	ENST00000238721.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3 	ENST00000335934.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr16_+_57653989_57654022	0.80308	GLI3	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr8_-_145013711_145013786	0.797974	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr9_-_101017900_101017951	0.785586	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr11_+_832944_832994	0.781114	GLI3	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr9_-_101017862_101017897	0.780485	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr3_-_43663389_43663511	0.772705	GLI3	ENST00000444344.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000456438.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000350459.4|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000396091.3|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000451430.2|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000428472.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000414522.2|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr10_+_124134201_124134350	0.763969	GLI3	ENST00000368990.3|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368988.1|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368989.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000463663.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
hg19_v2_chr1_+_13910194_13910339	0.749013	GLI3	ENST00000376057.4|PDPN|ENSG00000162493.12|podoplanin 	ENST00000510906.1|PDPN|ENSG00000162493.12|podoplanin
hg19_v2_chr18_+_3451646_3451722	0.74233	GLI3	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr8_-_145028013_145028088	0.738949	GLI3	ENST00000354958.2|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr1_-_153433120_153433177	0.737988	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr11_-_796197_796361	0.737919	GLI3	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr7_-_41742697_41742714	0.735023	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr1_+_233765353_233765391	0.730842	GLI3	ENST00000366620.1|KCNK1|ENSG00000135750.10|potassium channel, subfamily K, member 1
hg19_v2_chr7_-_24797546_24797732	0.726045	GLI3	ENST00000414428.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000419307.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000342947.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr8_+_15397732_15397792	0.725198	GLI3	ENST00000382020.4|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000506802.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000509380.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3 	ENST00000503731.1|TUSC3|ENSG00000104723.16|tumor suppressor candidate 3
hg19_v2_chr9_+_132962843_132962872	0.709689	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr7_-_56118981_56119152	0.699476	GLI3	ENST00000419984.2|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000413218.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000424596.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr1_+_26869597_26869637	0.694093	GLI3	ENST00000530003.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr15_+_45422178_45422216	0.690507	GLI3	ENST00000389037.3|DUOX1|ENSG00000137857.13|dual oxidase 1 	ENST00000558322.1|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr16_+_56691911_56691929	0.682357	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr15_+_45422131_45422172	0.679413	GLI3	ENST00000321429.4|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr16_-_84538218_84538364	0.671798	GLI3	ENST00000562447.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000565765.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000535580.1|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1 	ENST00000343629.6|TLDC1|ENSG00000140950.11|TBC/LysM-associated domain containing 1
hg19_v2_chr11_-_61646054_61646115	0.670858	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr11_+_2407287_2407325	0.666618	GLI3	ENST00000381036.3|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000492252.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr10_+_17270214_17270258	0.665198	GLI3	ENST00000544301.1|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr16_-_68269971_68270059	0.662973	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr12_-_120687948_120687971	0.650154	GLI3	ENST00000458477.2|PXN|ENSG00000089159.11|paxillin
hg19_v2_chr2_-_24307635_24307660	0.647146	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr19_+_676385_676403	0.645755	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr11_+_832804_832887	0.642369	GLI3	ENST00000397420.3|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525718.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr1_+_155293702_155293729	0.638176	GLI3	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr1_+_26605618_26605667	0.630546	GLI3	ENST00000270792.5|SH3BGRL3|ENSG00000142669.9|SH3 domain binding glutamic acid-rich protein like 3
hg19_v2_chr16_+_27325202_27325313	0.624569	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr16_+_4526341_4526460	0.621894	GLI3	ENST00000458134.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000219700.6|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000575120.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000572812.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000574466.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000576827.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000570445.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr11_+_32851487_32851496	0.617047	GLI3	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr1_+_36621529_36621585	0.616293	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr4_-_57524061_57524074	0.613495	GLI3	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr2_-_85637459_85637495	0.608404	GLI3	ENST00000409921.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr11_-_535515_535592	0.607766	GLI3	ENST00000311189.7|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000451590.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000417302.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog
hg19_v2_chr9_-_34637718_34637791	0.606717	GLI3	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chr10_-_49701686_49701697	0.60361	GLI3	ENST00000417247.2|ARHGAP22|ENSG00000128805.10|Rho GTPase activating protein 22
hg19_v2_chr4_+_1283639_1283705	0.595915	GLI3	ENST00000303400.4|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000505177.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000503653.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000264750.6|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000502558.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000452175.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000514708.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher
hg19_v2_chrX_+_135229600_135229624	0.59332	GLI3	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr9_+_136223414_136223474	0.587563	GLI3	ENST00000371964.4|SURF2|ENSG00000148291.5|surfeit 2
hg19_v2_chr12_+_57984965_57985059	0.587532	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr2_+_234545092_234545100	0.584131	GLI3	ENST00000344644.5|UGT1A10|ENSG00000242515.1|UDP glucuronosyltransferase 1 family, polypeptide A10
hg19_v2_chr6_+_116601265_116601288	0.572116	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr7_-_108096822_108096889	0.56735	GLI3	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr14_-_107211459_107211478	0.556554	GLI3	ENST00000390636.2|IGHV3-73|ENSG00000211976.2|immunoglobulin heavy variable 3-73
hg19_v2_chr11_-_118550346_118550364	0.552463	GLI3	ENST00000530256.1|TREH|ENSG00000118094.7|trehalase (brush-border membrane glycoprotein)
hg19_v2_chr1_-_201368707_201368760	0.536971	GLI3	ENST00000391967.2|LAD1|ENSG00000159166.9|ladinin 1
hg19_v2_chr5_-_157002775_157002790	0.536139	GLI3	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr15_+_67430339_67430366	0.534121	GLI3	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr12_-_57522813_57522883	0.532863	GLI3	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr9_-_27529726_27529827	0.530912	GLI3	ENST00000262244.5|MOB3B|ENSG00000120162.9|MOB kinase activator 3B
hg19_v2_chr19_-_45926739_45926863	0.530607	GLI3	ENST00000589381.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000591636.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000013807.5|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000592023.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
hg19_v2_chrX_-_134186144_134186228	0.525905	GLI3	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr1_+_167691185_167691188	0.524971	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr5_-_79551838_79551854	0.524106	GLI3	ENST00000509193.1|SERINC5|ENSG00000164300.11|serine incorporator 5 	ENST00000512972.2|SERINC5|ENSG00000164300.11|serine incorporator 5
hg19_v2_chr5_+_149340282_149340336	0.523301	GLI3	ENST00000286298.4|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr5_-_137878887_137878989	0.523225	GLI3	ENST00000507939.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000572514.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000499810.2|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000360541.5|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1
hg19_v2_chr1_+_203595903_203595934	0.519707	GLI3	ENST00000367218.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000367219.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000391954.2|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4
hg19_v2_chr1_+_154947126_154947147	0.513761	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr11_+_44117741_44117798	0.512035	GLI3	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr5_+_65892174_65892229	0.510446	GLI3	ENST00000404260.3|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000403625.2|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000406374.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr11_-_8986474_8986558	0.508799	GLI3	ENST00000525069.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr7_-_95064264_95064510	0.505072	GLI3	ENST00000536183.1|PON2|ENSG00000105854.8|paraoxonase 2 	ENST00000433091.2|PON2|ENSG00000105854.8|paraoxonase 2 	ENST00000222572.3|PON2|ENSG00000105854.8|paraoxonase 2
hg19_v2_chr11_+_844067_844158	0.503354	GLI3	ENST00000397406.1|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000409543.2|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000525201.1|TSPAN4|ENSG00000214063.6|tetraspanin 4
hg19_v2_chr6_-_42016385_42016706	0.501142	GLI3	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr22_-_28197486_28197544	0.499893	GLI3	ENST00000302326.4|MN1|ENSG00000169184.5|meningioma (disrupted in balanced translocation) 1
hg19_v2_chr3_+_101568349_101568365	0.495027	GLI3	ENST00000326151.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 	ENST00000326172.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
hg19_v2_chr11_-_65667884_65667895	0.491754	GLI3	ENST00000448083.2|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000531493.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000532401.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1
hg19_v2_chr11_+_114168085_114168222	0.490644	GLI3	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chrX_+_135618258_135618354	0.488567	GLI3	ENST00000440515.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila) 	ENST00000456412.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chr3_+_187871060_187871102	0.487358	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr1_+_47603109_47603127	0.486051	GLI3	ENST00000371890.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000294337.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000371891.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22
hg19_v2_chr1_-_146040968_146040968	0.48534	GLI3	ENST00000401010.3|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11
hg19_v2_chr4_-_102268484_102268521	0.476565	GLI3	ENST00000394853.4|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr1_+_154947148_154947175	0.474798	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chrX_+_134166333_134166371	0.473039	GLI3	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chrX_+_151999511_151999561	0.467879	GLI3	ENST00000370274.3|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000440023.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000432467.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like
hg19_v2_chr1_+_35544968_35545014	0.461248	GLI3	ENST00000359858.4|ZMYM1|ENSG00000197056.5|zinc finger, MYM-type 1 	ENST00000373330.1|ZMYM1|ENSG00000197056.5|zinc finger, MYM-type 1
hg19_v2_chr3_-_127542051_127542098	0.457153	GLI3	ENST00000398104.1|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr9_-_113800317_113800328	0.456861	GLI3	ENST00000374431.3|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr17_-_18161870_18162084	0.456368	GLI3	ENST00000579294.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000545457.2|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000379450.4|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000578558.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila)
hg19_v2_chrX_+_135229559_135229576	0.456177	GLI3	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr7_-_108096765_108096784	0.452568	GLI3	ENST00000379024.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000351718.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr5_+_6633456_6633529	0.452405	GLI3	ENST00000274192.5|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr11_-_61658853_61658932	0.452155	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr7_-_24797032_24797162	0.450972	GLI3	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr11_+_124735282_124735332	0.447157	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr9_-_139891165_139891255	0.445165	GLI3	ENST00000494426.1|CLIC3|ENSG00000169583.12|chloride intracellular channel 3
hg19_v2_chr14_-_74960030_74960050	0.444626	GLI3	ENST00000553490.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000557510.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr19_+_18699535_18699591	0.435973	GLI3	ENST00000358607.6|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr7_+_69064300_69064342	0.428946	GLI3	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr19_+_44084696_44084790	0.426215	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr19_-_54693401_54693491	0.421466	GLI3	ENST00000338624.6|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr11_+_64949158_64949216	0.420652	GLI3	ENST00000527739.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000526966.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533129.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000524773.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr1_-_160990886_160990921	0.420468	GLI3	ENST00000537746.1|F11R|ENSG00000158769.13|F11 receptor
hg19_v2_chr6_-_80657292_80657301	0.419687	GLI3	ENST00000369816.4|ELOVL4|ENSG00000118402.5|ELOVL fatty acid elongase 4
hg19_v2_chr11_+_64949343_64949454	0.418374	GLI3	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr14_-_74959994_74960020	0.418293	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chrX_-_23761317_23761419	0.413357	GLI3	ENST00000492081.1|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000379303.5|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000336430.7|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9
hg19_v2_chr21_-_33985127_33985191	0.403758	GLI3	ENST00000290155.3|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr5_-_180237445_180237462	0.400692	GLI3	ENST00000393340.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr1_+_220701740_220701899	0.397777	GLI3	ENST00000366917.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr1_+_40505891_40505995	0.395653	GLI3	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chr3_-_127542021_127542050	0.394042	GLI3	ENST00000434178.2|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr11_+_64073699_64073918	0.390652	GLI3	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chr7_+_44240520_44240652	0.388661	GLI3	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr19_-_51472031_51472047	0.38824	GLI3	ENST00000391808.1|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr2_+_17935119_17935146	0.386997	GLI3	ENST00000317402.7|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease
hg19_v2_chr7_+_116312411_116312502	0.384449	GLI3	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr9_-_113800341_113800373	0.38328	GLI3	ENST00000358883.4|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr18_+_11752040_11752117	0.381777	GLI3	ENST00000423027.3|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr14_+_29236269_29236287	0.380012	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr9_-_130639997_130640022	0.378434	GLI3	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr1_+_155278539_155278559	0.376984	GLI3	ENST00000447866.1|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr6_+_31371337_31371449	0.372309	GLI3	ENST00000449934.2|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A 	ENST00000421350.1|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A
hg19_v2_chr19_+_37464063_37464127	0.371273	GLI3	ENST00000586353.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000433993.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000592567.1|ZNF568|ENSG00000198453.8|zinc finger protein 568
hg19_v2_chr2_+_17935383_17935439	0.371107	GLI3	ENST00000524465.1|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease 	ENST00000381254.2|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease 	ENST00000532257.1|GEN1|ENSG00000178295.10|GEN1 Holliday junction 5' flap endonuclease
hg19_v2_chr20_-_50808236_50808264	0.369742	GLI3	ENST00000361387.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr11_-_104817919_104817919	0.368971	GLI3	ENST00000533252.1|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr19_-_44285401_44285446	0.367938	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr17_-_17942473_17942523	0.365603	GLI3	ENST00000585101.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000474627.3|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000444058.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2
hg19_v2_chr1_+_19923454_19923561	0.365562	GLI3	ENST00000602662.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough 	ENST00000322753.6|MINOS1|ENSG00000173436.9|mitochondrial inner membrane organizing system 1 	ENST00000602293.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough
hg19_v2_chr10_+_75910960_75910989	0.365196	GLI3	ENST00000539909.1|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000286621.2|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr17_-_62502639_62502849	0.365076	GLI3	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr19_+_18699599_18699623	0.363842	GLI3	ENST00000450195.2|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr11_-_118550375_118550407	0.363237	GLI3	ENST00000525958.1|TREH|ENSG00000118094.7|trehalase (brush-border membrane glycoprotein) 	ENST00000264029.4|TREH|ENSG00000118094.7|trehalase (brush-border membrane glycoprotein) 	ENST00000397925.1|TREH|ENSG00000118094.7|trehalase (brush-border membrane glycoprotein) 	ENST00000529101.1|TREH|ENSG00000118094.7|trehalase (brush-border membrane glycoprotein)
hg19_v2_chrX_-_134156502_134156577	0.362728	GLI3	ENST00000391440.1|FAM127C|ENSG00000212747.3|family with sequence similarity 127, member C
hg19_v2_chr10_+_75936444_75936537	0.362597	GLI3	ENST00000372734.3|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000541550.1|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr1_+_155278625_155278745	0.362393	GLI3	ENST00000368356.4|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase 	ENST00000356657.6|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr17_+_38333263_38333368	0.360843	GLI3	ENST00000456989.2|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000543876.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000544503.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000264644.6|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000538884.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1
hg19_v2_chr6_+_99282570_99282591	0.355262	GLI3	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr18_+_56530136_56530199	0.353313	GLI3	ENST00000591083.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr21_-_33984888_33984903	0.352947	GLI3	ENST00000382549.4|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59 	ENST00000540881.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr10_+_134000404_134000432	0.350465	GLI3	ENST00000338492.4|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4 	ENST00000368629.1|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4
hg19_v2_chr2_+_119981384_119981446	0.347409	GLI3	ENST00000393108.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000354888.5|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000450943.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393110.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393106.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000409811.1|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393107.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase
hg19_v2_chr2_-_11272234_11272390	0.344798	GLI3	ENST00000590207.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000417697.2|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000396164.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000536743.1|AC062028.1|ENSG00000145063.10|AC062028.1	ENST00000544306.1|AC062028.1|ENSG00000145063.10|AC062028.1
hg19_v2_chr4_-_111119804_111119832	0.340922	GLI3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr15_+_40531621_40531719	0.340353	GLI3	ENST00000560346.1|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr11_-_64085533_64085558	0.339164	GLI3	ENST00000544844.1|TRMT112|ENSG00000173113.2|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
hg19_v2_chr14_-_70826438_70826453	0.338506	GLI3	ENST00000389912.6|COX16|ENSG00000133983.10|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
hg19_v2_chr14_-_74959978_74959992	0.338054	GLI3	ENST00000541064.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr19_-_59066327_59066389	0.33435	GLI3	ENST00000596708.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000601220.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000597848.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr12_+_120933859_120933899	0.330084	GLI3	ENST00000242577.6|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548214.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000392508.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr2_-_178257401_178257432	0.329096	GLI3	ENST00000464747.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr4_+_148402069_148402099	0.325309	GLI3	ENST00000358556.4|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000339690.5|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000511804.1|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000324300.5|EDNRA|ENSG00000151617.11|endothelin receptor type A
hg19_v2_chr10_-_105615164_105615323	0.324893	GLI3	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr11_-_111783919_111783937	0.324663	GLI3	ENST00000531198.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000533879.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr21_-_33984456_33984726	0.324635	GLI3	ENST00000431216.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000553001.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000440966.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr9_-_98079965_98080008	0.324399	GLI3	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr3_-_48130707_48130789	0.3203	GLI3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr1_+_167691191_167691389	0.316415	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr16_+_1730338_1730369	0.314333	GLI3	ENST00000566691.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000382710.4|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like
hg19_v2_chr7_-_42971759_42971822	0.312122	GLI3	ENST00000538645.1|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2 	ENST00000445517.1|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2 	ENST00000223321.4|PSMA2|ENSG00000106588.6|proteasome (prosome, macropain) subunit, alpha type, 2
hg19_v2_chrX_-_78622805_78622877	0.308537	GLI3	ENST00000373298.2|ITM2A|ENSG00000078596.6|integral membrane protein 2A
hg19_v2_chr5_-_132112907_132112918	0.307569	GLI3	ENST00000458488.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr21_-_33984865_33984883	0.307262	GLI3	ENST00000458138.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr1_-_6052463_6052542	0.305687	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr11_-_8985927_8986008	0.302506	GLI3	ENST00000528117.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B 	ENST00000309134.5|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr6_-_167040731_167040745	0.301772	GLI3	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_+_162531294_162531332	0.297346	GLI3	ENST00000367926.4|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1 	ENST00000271469.3|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1
hg19_v2_chr19_+_39989535_39989562	0.297323	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr5_-_150460914_150460997	0.296682	GLI3	ENST00000389378.2|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr21_-_36260980_36261011	0.296522	GLI3	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr1_-_1310530_1310603	0.294316	GLI3	ENST00000338370.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000321751.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000378853.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr15_-_72523454_72523684	0.29416	GLI3	ENST00000565154.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000565184.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000389093.3|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000449901.2|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000335181.5|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000319622.6|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr7_-_128045984_128046026	0.288691	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr12_-_118498958_118499021	0.288015	GLI3	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr19_+_9945962_9946023	0.287059	GLI3	ENST00000587625.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000247970.4|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000588695.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1
hg19_v2_chr5_+_6633534_6633581	0.283359	GLI3	ENST00000537411.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 	ENST00000538824.1|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr7_-_151217166_151217206	0.282017	GLI3	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr1_-_20834586_20834656	0.27912	GLI3	ENST00000264198.3|MUL1|ENSG00000090432.5|mitochondrial E3 ubiquitin protein ligase 1
hg19_v2_chr8_-_142011244_142011288	0.277679	GLI3	ENST00000340930.3|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000520828.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000524257.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000523679.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr12_-_110883346_110883392	0.275241	GLI3	ENST00000547365.1|ARPC3|ENSG00000111229.11|actin related protein 2/3 complex, subunit 3, 21kDa
hg19_v2_chr11_+_66025938_66026016	0.2752	GLI3	ENST00000394066.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr12_+_120933904_120933923	0.275109	GLI3	ENST00000550178.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000550845.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549989.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000552870.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr11_-_8986279_8986320	0.27342	GLI3	ENST00000534025.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr19_-_6379069_6379069	0.272668	GLI3	ENST00000597721.1|PSPN|ENSG00000125650.4|persephin
hg19_v2_chr6_-_33547975_33547999	0.272117	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr1_+_24117693_24117717	0.269019	GLI3	ENST00000374503.3|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374502.3|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr17_-_79620721_79620767	0.267337	GLI3	ENST00000571004.1|PDE6G|ENSG00000185527.7|phosphodiesterase 6G, cGMP-specific, rod, gamma
hg19_v2_chr5_-_132112921_132112960	0.266614	GLI3	ENST00000378721.4|SEPT8|ENSG00000164402.9|septin 8 	ENST00000378701.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chrX_+_153409678_153409698	0.264777	GLI3	ENST00000369951.4|OPN1LW|ENSG00000102076.5|opsin 1 (cone pigments), long-wave-sensitive
hg19_v2_chr3_-_32612263_32612366	0.263347	GLI3	ENST00000432458.2|DYNC1LI1|ENSG00000144635.4|dynein, cytoplasmic 1, light intermediate chain 1 	ENST00000424991.1|DYNC1LI1|ENSG00000144635.4|dynein, cytoplasmic 1, light intermediate chain 1 	ENST00000273130.4|DYNC1LI1|ENSG00000144635.4|dynein, cytoplasmic 1, light intermediate chain 1
hg19_v2_chr12_-_56122761_56123004	0.262313	GLI3	ENST00000552164.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000420846.3|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000257857.4|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr9_+_112542572_112542590	0.262175	GLI3	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr9_-_132404374_132404450	0.259797	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr1_-_85358850_85358906	0.259711	GLI3	ENST00000370611.3|LPAR3|ENSG00000171517.5|lysophosphatidic acid receptor 3
hg19_v2_chr14_+_75469606_75469690	0.255879	GLI3	ENST00000266126.5|EIF2B2|ENSG00000119718.6|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa
hg19_v2_chr7_+_143078652_143078754	0.25522	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr12_-_57030115_57030177	0.253342	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr5_-_102455801_102455855	0.252826	GLI3	ENST00000508629.1|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1 	ENST00000399004.2|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1
hg19_v2_chr14_+_105155925_105155979	0.252261	GLI3	ENST00000330634.7|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000398337.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000392634.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing
hg19_v2_chr2_+_234545148_234545161	0.25127	GLI3	ENST00000373445.1|UGT1A10|ENSG00000242515.1|UDP glucuronosyltransferase 1 family, polypeptide A10
hg19_v2_chr19_+_36602104_36602105	0.251167	GLI3	ENST00000585332.1|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3 	ENST00000262637.4|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3
hg19_v2_chr10_-_79398250_79398353	0.250587	GLI3	ENST00000286627.5|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr2_+_201936707_201936753	0.250217	GLI3	ENST00000433898.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 	ENST00000454214.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
hg19_v2_chr22_+_31644388_31644473	0.2502	GLI3	ENST00000333611.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000340552.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2
hg19_v2_chr22_-_21482046_21482046	0.246907	GLI3	ENST00000419447.1|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr19_+_39989580_39989608	0.246829	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr8_-_102217515_102217719	0.245342	GLI3	ENST00000520347.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000523922.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000520984.1|ZNF706|ENSG00000120963.7|zinc finger protein 706
hg19_v2_chr18_+_3262415_3262611	0.244883	GLI3	ENST00000581193.1|MYL12B|ENSG00000118680.8|myosin, light chain 12B, regulatory 	ENST00000400175.5|MYL12B|ENSG00000118680.8|myosin, light chain 12B, regulatory
hg19_v2_chr14_+_19553365_19553365	0.244376	GLI3	ENST00000409832.3|POTEG|ENSG00000222036.3|POTE ankyrin domain family, member G
hg19_v2_chr12_-_118541743_118541777	0.243873	GLI3	ENST00000359236.5|VSIG10|ENSG00000176834.9|V-set and immunoglobulin domain containing 10
hg19_v2_chr10_-_35104185_35104267	0.243412	GLI3	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr1_+_24117627_24117659	0.242833	GLI3	ENST00000400061.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr1_-_211752073_211752084	0.242788	GLI3	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr16_+_84209738_84209748	0.241024	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr19_-_59066452_59066496	0.240125	GLI3	ENST00000312547.2|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr17_-_1420182_1420279	0.239917	GLI3	ENST00000421807.2|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr2_+_10560147_10560201	0.239424	GLI3	ENST00000422133.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr11_+_122709200_122709215	0.239139	GLI3	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chr10_-_135116364_135116485	0.239075	GLI3	ENST00000252936.3|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2 	ENST00000543663.1|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2
hg19_v2_chr8_-_57906362_57906452	0.238482	GLI3	ENST00000262644.4|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chr19_-_4454081_4454090	0.238191	GLI3	ENST00000591919.1|UBXN6|ENSG00000167671.7|UBX domain protein 6
hg19_v2_chr6_-_29600832_29600982	0.234659	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr8_+_22436248_22436259	0.234307	GLI3	ENST00000308354.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr17_+_17942594_17942606	0.234202	GLI3	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr2_+_27851863_27851930	0.231673	GLI3	ENST00000264718.3|GPN1|ENSG00000198522.9|GPN-loop GTPase 1 	ENST00000610189.1|GPN1|ENSG00000198522.9|GPN-loop GTPase 1
hg19_v2_chr7_-_105029812_105029860	0.23155	GLI3	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chrX_-_130037198_130037234	0.230428	GLI3	ENST00000370935.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000338144.3|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000394363.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr11_-_73472096_73472204	0.230316	GLI3	ENST00000541588.1|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000336083.3|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000540771.1|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family 	ENST00000310653.6|RAB6A|ENSG00000175582.15|RAB6A, member RAS oncogene family
hg19_v2_chr12_-_56122220_56122266	0.229335	GLI3	ENST00000552692.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr11_-_1785139_1785222	0.228924	GLI3	ENST00000236671.2|CTSD|ENSG00000117984.8|cathepsin D
hg19_v2_chr8_+_22436635_22436663	0.228329	GLI3	ENST00000452226.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397760.4|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000339162.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397761.2|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr20_+_44637526_44637554	0.225404	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr7_-_151217001_151217019	0.224762	GLI3	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr5_-_157002749_157002768	0.224069	GLI3	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr1_+_1217489_1217576	0.221966	GLI3	ENST00000325425.8|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit 	ENST00000400928.3|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit
hg19_v2_chr1_+_44440575_44440646	0.221731	GLI3	ENST00000532642.1|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000236067.4|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000471859.2|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
hg19_v2_chr6_-_33548006_33548069	0.221379	GLI3	ENST00000374467.3|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr13_+_115000339_115000380	0.220773	GLI3	ENST00000360383.3|CDC16|ENSG00000130177.10|cell division cycle 16 	ENST00000375312.3|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr8_-_17555164_17555204	0.219848	GLI3	ENST00000297488.6|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr8_-_145652336_145652378	0.21765	GLI3	ENST00000529182.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000526054.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr8_-_142011291_142011307	0.217283	GLI3	ENST00000521059.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr13_+_115000384_115000458	0.21702	GLI3	ENST00000356221.3|CDC16|ENSG00000130177.10|cell division cycle 16 	ENST00000375310.1|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr11_-_89541743_89541743	0.216817	GLI3	ENST00000329758.1|TRIM49|ENSG00000168930.9|tripartite motif containing 49
hg19_v2_chr3_-_107809816_107809885	0.216459	GLI3	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr8_+_11141925_11141937	0.215713	GLI3	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr1_-_161600942_161600975	0.215709	GLI3	ENST00000421702.2|FCGR3B|ENSG00000162747.5|Fc fragment of IgG, low affinity IIIb, receptor (CD16b)
hg19_v2_chr11_+_64053311_64053387	0.214023	GLI3	ENST00000540370.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr3_-_127872625_127872757	0.211055	GLI3	ENST00000464873.1|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1
hg19_v2_chr3_-_197026152_197026203	0.210181	GLI3	ENST00000419354.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr4_+_3344141_3344178	0.209113	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr20_+_43514315_43514319	0.20755	GLI3	ENST00000353703.4|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
hg19_v2_chrY_-_25345070_25345241	0.203858	GLI3	ENST00000382510.4|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000426000.2|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000540248.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000405239.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1
hg19_v2_chr16_+_2521500_2521514	0.203196	GLI3	ENST00000293973.1|NTN3|ENSG00000162068.1|netrin 3
hg19_v2_chr3_-_128902729_128902753	0.202893	GLI3	ENST00000451728.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000446936.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000502976.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000500450.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000441626.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr14_+_105452094_105452152	0.202722	GLI3	ENST00000551606.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79 	ENST00000547315.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79
hg19_v2_chr9_-_34620440_34620515	0.202375	GLI3	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr19_-_59070239_59070359	0.201739	GLI3	ENST00000595957.1|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M 	ENST00000253023.3|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M
hg19_v2_chrX_-_7895755_7895780	0.201663	GLI3	ENST00000444736.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4 	ENST00000537427.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4 	ENST00000442940.1|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4
hg19_v2_chr12_-_123756781_123756881	0.200212	GLI3	ENST00000544658.1|CDK2AP1|ENSG00000111328.2|cyclin-dependent kinase 2 associated protein 1
hg19_v2_chr8_-_131028869_131028918	0.198745	GLI3	ENST00000518283.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519110.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chr1_-_1310870_1310920	0.197275	GLI3	ENST00000338338.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr11_-_506739_506821	0.19685	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr16_+_31044812_31044931	0.196204	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr1_-_40105617_40105617	0.195379	GLI3	ENST00000372852.3|HEYL|ENSG00000163909.6|hes-related family bHLH transcription factor with YRPW motif-like
hg19_v2_chr11_-_73720276_73720286	0.193948	GLI3	ENST00000348534.4|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr16_-_89556942_89557020	0.193924	GLI3	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr15_+_74287035_74287117	0.193241	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr1_-_47407111_47407128	0.193078	GLI3	ENST00000371904.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr12_+_122326662_122326768	0.192821	GLI3	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr5_+_73980965_73980976	0.191581	GLI3	ENST00000261416.7|HEXB|ENSG00000049860.9|hexosaminidase B (beta polypeptide)
hg19_v2_chr1_-_155225178_155225225	0.190656	GLI3	ENST00000361361.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chr3_+_130612803_130612877	0.190298	GLI3	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_-_46664074_46664126	0.190212	GLI3	ENST00000371986.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 	ENST00000371984.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
hg19_v2_chr20_+_44098385_44098401	0.189576	GLI3	ENST00000217425.5|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2 	ENST00000339946.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr1_-_226111929_226112026	0.189367	GLI3	ENST00000343818.6|PYCR2|ENSG00000143811.12|pyrroline-5-carboxylate reductase family, member 2 	ENST00000432920.2|RP4-559A3.7|ENSG00000255835.1|Uncharacterized protein
hg19_v2_chr20_+_43514320_43514425	0.189107	GLI3	ENST00000372839.3|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 	ENST00000428262.1|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 	ENST00000445830.1|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
hg19_v2_chr16_-_75241050_75241083	0.188975	GLI3	ENST00000303037.8|CTRB2|ENSG00000168928.8|chymotrypsinogen B2
hg19_v2_chr10_+_104503727_104503748	0.188885	GLI3	ENST00000448841.1|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr17_-_26989136_26989218	0.188654	GLI3	ENST00000247020.4|SDF2|ENSG00000132581.5|stromal cell-derived factor 2
hg19_v2_chr6_+_33172407_33172419	0.188205	GLI3	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr20_+_42143136_42143166	0.187982	GLI3	ENST00000373134.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chrX_-_7895479_7895491	0.18772	GLI3	ENST00000381042.4|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4
hg19_v2_chrX_+_55744166_55744222	0.185388	GLI3	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr16_+_765092_765169	0.185179	GLI3	ENST00000568223.2|METRN|ENSG00000103260.4|meteorin, glial cell differentiation regulator
hg19_v2_chr19_-_42573650_42573726	0.183779	GLI3	ENST00000593562.1|GRIK5|ENSG00000105737.5|glutamate receptor, ionotropic, kainate 5
hg19_v2_chr6_-_116601044_116601106	0.18359	GLI3	ENST00000368608.3|TSPYL1|ENSG00000189241.6|TSPY-like 1
hg19_v2_chr14_+_22409308_22409322	0.182905	GLI3	ENST00000390441.2|TRAV9-2|ENSG00000211793.2|T cell receptor alpha variable 9-2
hg19_v2_chr5_-_150460539_150460640	0.181798	GLI3	ENST00000520931.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000520695.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000521591.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000518977.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr21_-_38445470_38445491	0.180455	GLI3	ENST00000399098.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr19_-_51336443_51336443	0.180103	GLI3	ENST00000598673.1|KLK15|ENSG00000174562.9|kallikrein-related peptidase 15
hg19_v2_chr16_+_2564254_2564305	0.179636	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr15_+_49447947_49448036	0.179084	GLI3	ENST00000327171.3|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560654.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr10_+_43633914_43633935	0.176138	GLI3	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr1_+_15479054_15479073	0.176056	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr5_+_76506706_76506787	0.175998	GLI3	ENST00000340978.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000346042.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000264917.5|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000342343.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000333194.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B
hg19_v2_chr1_+_21766588_21766637	0.175461	GLI3	ENST00000454000.2|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318220.6|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318249.5|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3
hg19_v2_chr12_-_96429423_96429439	0.174884	GLI3	ENST00000228740.2|LTA4H|ENSG00000111144.5|leukotriene A4 hydrolase
hg19_v2_chr8_+_145133493_145133551	0.174152	GLI3	ENST00000316052.5|EXOSC4|ENSG00000178896.6|exosome component 4 	ENST00000525936.1|EXOSC4|ENSG00000178896.6|exosome component 4
hg19_v2_chr9_+_34458771_34458850	0.173888	GLI3	ENST00000437363.1|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1 	ENST00000242317.4|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1
hg19_v2_chr13_+_27825706_27825741	0.173824	GLI3	ENST00000272274.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000319826.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000326092.4|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr13_+_115000556_115000573	0.172205	GLI3	ENST00000252458.6|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr17_+_66245341_66245370	0.171933	GLI3	ENST00000577985.1|AMZ2|ENSG00000196704.7|archaelysin family metallopeptidase 2
hg19_v2_chr19_-_40791302_40791443	0.171875	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr20_-_58508702_58508728	0.17184	GLI3	ENST00000357552.3|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2 	ENST00000425931.1|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2
hg19_v2_chr8_-_67525473_67525518	0.171639	GLI3	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr1_+_47901689_47901689	0.17129	GLI3	ENST00000334793.5|FOXD2|ENSG00000186564.5|forkhead box D2
hg19_v2_chr19_-_46318561_46318577	0.171181	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr11_+_118478313_118478358	0.171015	GLI3	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr5_-_39270725_39270771	0.1705	GLI3	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr15_-_42565606_42565649	0.170201	GLI3	ENST00000307216.6|TMEM87A|ENSG00000103978.11|transmembrane protein 87A 	ENST00000448392.1|TMEM87A|ENSG00000103978.11|transmembrane protein 87A
hg19_v2_chrX_+_55744228_55744318	0.169826	GLI3	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr6_-_3752222_3752260	0.169539	GLI3	ENST00000380283.4|PXDC1|ENSG00000168994.9|PX domain containing 1
hg19_v2_chr19_+_15904761_15904761	0.169465	GLI3	ENST00000308940.8|OR10H5|ENSG00000172519.8|olfactory receptor, family 10, subfamily H, member 5
hg19_v2_chr8_+_146052849_146053003	0.167883	GLI3	ENST00000532777.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000325241.6|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000446747.2|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000525266.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000544249.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000325217.5|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000533314.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000527218.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000529819.1|ZNF7|ENSG00000147789.11|zinc finger protein 7 	ENST00000528372.1|ZNF7|ENSG00000147789.11|zinc finger protein 7
hg19_v2_chr19_+_55385682_55385717	0.167032	GLI3	ENST00000391726.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr12_+_88429223_88429301	0.16679	GLI3	ENST00000356891.3|C12orf29|ENSG00000133641.13|chromosome 12 open reading frame 29
hg19_v2_chr22_+_24951949_24951980	0.165438	GLI3	ENST00000402849.1|SNRPD3|ENSG00000100028.7|small nuclear ribonucleoprotein D3 polypeptide 18kDa
hg19_v2_chr19_+_44085189_44085189	0.165168	GLI3	ENST00000562365.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr9_+_112542591_112542769	0.164657	GLI3	ENST00000483909.1|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000314527.4|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000413420.1|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000302798.7|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000555236.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000510514.5|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr6_+_160183492_160183523	0.164432	GLI3	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr22_+_22707260_22707289	0.163769	GLI3	ENST00000390293.1|IGLV5-48|ENSG00000211647.1|immunoglobulin lambda variable 5-48 (non-functional)
hg19_v2_chr21_-_18985230_18985265	0.163524	GLI3	ENST00000457956.1|BTG3|ENSG00000154640.10|BTG family, member 3 	ENST00000348354.6|BTG3|ENSG00000154640.10|BTG family, member 3
hg19_v2_chr8_+_22428457_22428633	0.162992	GLI3	ENST00000517962.1|SORBS3|ENSG00000120896.9|sorbin and SH3 domain containing 3
hg19_v2_chr15_+_63569731_63569783	0.161781	GLI3	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr6_+_2988847_2988908	0.161592	GLI3	ENST00000380472.3|NQO2|ENSG00000124588.15|NAD(P)H dehydrogenase, quinone 2 	ENST00000605901.1|LINC01011|ENSG00000244041.3|long intergenic non-protein coding RNA 1011 	ENST00000454015.1|LINC01011|ENSG00000244041.3|long intergenic non-protein coding RNA 1011
hg19_v2_chr1_+_207669573_207669606	0.161413	GLI3	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr16_-_2318373_2318414	0.161375	GLI3	ENST00000566458.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000320225.5|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr6_+_27356497_27356557	0.16105	GLI3	ENST00000244576.4|ZNF391|ENSG00000124613.4|zinc finger protein 391
hg19_v2_chr16_+_86612112_86612123	0.16091	GLI3	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chr6_-_46620522_46620560	0.160232	GLI3	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr1_+_28655505_28655629	0.158744	GLI3	ENST00000373842.4|MED18|ENSG00000130772.9|mediator complex subunit 18 	ENST00000398997.2|MED18|ENSG00000130772.9|mediator complex subunit 18
hg19_v2_chrX_-_119603138_119603220	0.157965	GLI3	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr6_+_35436167_35436194	0.157945	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr20_-_13619550_13619587	0.156296	GLI3	ENST00000455532.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000544472.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000539805.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000337743.4|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1
hg19_v2_chrY_+_25365594_25365701	0.15576	GLI3	ENST00000382449.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382440.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382306.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382434.3|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000449947.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382294.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382433.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382424.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000400493.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382431.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2
hg19_v2_chr22_+_51176624_51176663	0.155075	GLI3	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr15_+_40532058_40532072	0.155001	GLI3	ENST00000260404.4|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr11_+_64052692_64052747	0.154961	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr12_+_51632638_51632665	0.152072	GLI3	ENST00000549732.2|DAZAP2|ENSG00000183283.11|DAZ associated protein 2
hg19_v2_chr12_+_122326630_122326646	0.151812	GLI3	ENST00000541212.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000340175.5|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr8_-_144691718_144691784	0.149805	GLI3	ENST00000377579.3|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000433751.1|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000220966.6|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like
hg19_v2_chr17_-_1420006_1420036	0.14935	GLI3	ENST00000320345.6|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000406424.4|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chrX_-_100914781_100914876	0.149239	GLI3	ENST00000431597.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000458024.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000413506.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000440675.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000328766.5|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000356824.4|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2
hg19_v2_chr8_-_145653885_145653937	0.148105	GLI3	ENST00000531032.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000292510.4|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000377348.2|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000530790.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000533806.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr11_-_77123065_77123109	0.147216	GLI3	ENST00000530617.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1
hg19_v2_chr11_-_73720122_73720136	0.147074	GLI3	ENST00000426995.2|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr22_+_38349724_38349734	0.146933	GLI3	ENST00000470701.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr12_+_130646999_130647019	0.146206	GLI3	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr3_+_14166440_14166541	0.145613	GLI3	ENST00000306077.4|TMEM43|ENSG00000170876.7|transmembrane protein 43
hg19_v2_chr1_-_204380919_204380953	0.144657	GLI3	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr19_+_44556158_44556206	0.144277	GLI3	ENST00000434772.3|ZNF223|ENSG00000178386.8|zinc finger protein 223 	ENST00000585552.1|ZNF223|ENSG00000178386.8|zinc finger protein 223
hg19_v2_chr19_-_46318486_46318531	0.144063	GLI3	ENST00000597055.1|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr19_-_54804173_54804302	0.14385	GLI3	ENST00000391744.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 	ENST00000251390.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3
hg19_v2_chr18_+_3448455_3448497	0.141009	GLI3	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr13_-_108867101_108867130	0.140059	GLI3	ENST00000356922.4|LIG4|ENSG00000174405.9|ligase IV, DNA, ATP-dependent
hg19_v2_chr11_-_119187826_119187847	0.139852	GLI3	ENST00000264036.4|MCAM|ENSG00000076706.10|melanoma cell adhesion molecule
hg19_v2_chr11_+_61957687_61957689	0.139665	GLI3	ENST00000306238.3|SCGB1D1|ENSG00000168515.3|secretoglobin, family 1D, member 1
hg19_v2_chr16_-_2318055_2318104	0.139367	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr2_+_201936458_201936467	0.138838	GLI3	ENST00000237889.4|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
hg19_v2_chr1_+_15479021_15479053	0.138369	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr3_+_41240986_41241005	0.137963	GLI3	ENST00000396185.3|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa
hg19_v2_chr12_+_48166978_48167047	0.137378	GLI3	ENST00000442218.2|SLC48A1|ENSG00000211584.9|solute carrier family 48 (heme transporter), member 1
hg19_v2_chr5_-_180242534_180242567	0.137062	GLI3	ENST00000333055.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 	ENST00000513431.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr15_+_74287118_74287144	0.136458	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr2_+_131862872_131862885	0.136288	GLI3	ENST00000439822.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr20_+_814377_814452	0.134582	GLI3	ENST00000304189.2|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A 	ENST00000381939.1|FAM110A|ENSG00000125898.8|family with sequence similarity 110, member A
hg19_v2_chr7_+_142960505_142960553	0.134532	GLI3	ENST00000409500.3|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1 	ENST00000443571.2|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1 	ENST00000358406.5|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1 	ENST00000479303.1|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1
hg19_v2_chr19_-_14992264_14992264	0.134496	GLI3	ENST00000327462.2|OR7A17|ENSG00000185385.2|olfactory receptor, family 7, subfamily A, member 17
hg19_v2_chrX_+_22056165_22056173	0.13448	GLI3	ENST00000535894.1|PHEX|ENSG00000102174.7|phosphate regulating endopeptidase homolog, X-linked
hg19_v2_chr20_-_3762087_3762100	0.134088	GLI3	ENST00000379756.3|SPEF1|ENSG00000101222.8|sperm flagellar 1
hg19_v2_chr20_+_44098346_44098373	0.133979	GLI3	ENST00000372676.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr17_+_17942684_17942784	0.13386	GLI3	ENST00000376345.3|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr22_+_25615489_25615544	0.133837	GLI3	ENST00000398215.2|CRYBB2|ENSG00000244752.2|crystallin, beta B2
hg19_v2_chr9_-_123476612_123476698	0.13361	GLI3	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr5_-_180236811_180236880	0.133137	GLI3	ENST00000446023.2|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr11_+_66025167_66025190	0.132599	GLI3	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr11_-_62341445_62341499	0.130557	GLI3	ENST00000329251.4|EEF1G|ENSG00000254772.5|eukaryotic translation elongation factor 1 gamma
hg19_v2_chr12_-_54582655_54582780	0.130485	GLI3	ENST00000504338.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514685.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000504797.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000513838.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000505128.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000337581.3|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000503306.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000243112.5|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514196.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000506169.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000507904.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000508394.2|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1
hg19_v2_chr1_+_17248418_17248445	0.12979	GLI3	ENST00000375541.5|CROCC|ENSG00000058453.12|ciliary rootlet coiled-coil, rootletin
hg19_v2_chrX_+_107334895_107334934	0.129165	GLI3	ENST00000372232.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000345734.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000372254.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase
hg19_v2_chr1_+_27114418_27114518	0.128975	GLI3	ENST00000078527.4|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr8_+_103563792_103563808	0.128767	GLI3	ENST00000285402.3|ODF1|ENSG00000155087.3|outer dense fiber of sperm tails 1
hg19_v2_chr12_-_10542617_10542647	0.12871	GLI3	ENST00000240618.6|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr12_-_57940904_57941002	0.128155	GLI3	ENST00000550954.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000434715.3|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000546670.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000543672.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50)
hg19_v2_chr22_+_18834324_18834324	0.128042	GLI3	ENST00000342005.4|AC008132.13|ENSG00000161103.7|Uncharacterized protein
hg19_v2_chr14_+_104095514_104095634	0.127785	GLI3	ENST00000348520.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000380038.3|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000389744.4|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557575.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000553286.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000347839.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000555836.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000334553.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000246489.7|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557450.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000452929.2|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000554280.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000445352.4|KLC1|ENSG00000126214.16|kinesin light chain 1
hg19_v2_chr1_+_179262905_179262986	0.127466	GLI3	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr4_+_83956312_83956378	0.127155	GLI3	ENST00000509317.1|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4 	ENST00000503682.1|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4 	ENST00000511653.1|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4
hg19_v2_chr19_+_44100632_44100683	0.127123	GLI3	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr3_-_52273098_52273276	0.126937	GLI3	ENST00000499914.2|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2 	ENST00000597542.1|TLR9|ENSG00000239732.2|toll-like receptor 9 	ENST00000305533.5|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2
hg19_v2_chr12_-_57410304_57410325	0.126141	GLI3	ENST00000441881.1|TAC3|ENSG00000166863.7|tachykinin 3 	ENST00000458521.2|TAC3|ENSG00000166863.7|tachykinin 3
hg19_v2_chr16_+_75256507_75256511	0.125898	GLI3	ENST00000495583.1|CTRB1|ENSG00000168925.6|chymotrypsinogen B1
hg19_v2_chr1_-_161600822_161600923	0.125855	GLI3	ENST00000534776.1|FCGR3B|ENSG00000162747.5|Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 	ENST00000540048.1|FCGR3A|ENSG00000203747.5|Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
hg19_v2_chr6_+_28109703_28109716	0.125681	GLI3	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr3_+_10068095_10068183	0.125676	GLI3	ENST00000287647.3|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383807.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383806.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000419585.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2
hg19_v2_chr10_+_180405_180429	0.125144	GLI3	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr17_-_46692287_46692317	0.124906	GLI3	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr14_-_21566731_21566836	0.124796	GLI3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr17_-_46178527_46178566	0.124686	GLI3	ENST00000393408.3|CBX1|ENSG00000108468.10|chromobox homolog 1
hg19_v2_chr11_-_88070920_88070955	0.122139	GLI3	ENST00000524463.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000227266.5|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr8_+_23104130_23104184	0.121322	GLI3	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr14_-_106791536_106791536	0.121305	GLI3	ENST00000390613.2|IGHV3-30|ENSG00000211953.2|immunoglobulin heavy variable 3-30
hg19_v2_chr11_+_3819049_3819202	0.121176	GLI3	ENST00000396986.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000300730.6|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532535.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396993.4|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396991.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532523.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000459679.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464261.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464906.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464441.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2
hg19_v2_chr15_+_78632666_78632701	0.120762	GLI3	ENST00000299529.6|CRABP1|ENSG00000166426.7|cellular retinoic acid binding protein 1
hg19_v2_chr21_-_37432764_37432831	0.120378	GLI3	ENST00000399212.1|SETD4|ENSG00000185917.9|SET domain containing 4 	ENST00000446166.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chr3_+_42190714_42190787	0.119899	GLI3	ENST00000449246.1|TRAK1|ENSG00000182606.10|trafficking protein, kinesin binding 1
hg19_v2_chr3_-_10028366_10028552	0.119033	GLI3	ENST00000429759.1|EMC3|ENSG00000125037.8|ER membrane protein complex subunit 3
hg19_v2_chr4_+_83956237_83956248	0.118206	GLI3	ENST00000264389.2|COPS4|ENSG00000138663.4|COP9 signalosome subunit 4
hg19_v2_chr15_+_49462397_49462430	0.117718	GLI3	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr19_-_44124019_44124030	0.117235	GLI3	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr2_+_60983361_60983418	0.116953	GLI3	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr5_-_168727713_168727755	0.116809	GLI3	ENST00000404867.3|SLIT3|ENSG00000184347.10|slit homolog 3 (Drosophila)
hg19_v2_chr21_-_46964306_46964332	0.116491	GLI3	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr17_-_73149921_73149971	0.115514	GLI3	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr16_+_84682108_84682218	0.115087	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chr7_-_112430647_112430776	0.114672	GLI3	ENST00000312814.6|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr22_+_41258250_41258269	0.114643	GLI3	ENST00000544094.1|XPNPEP3|ENSG00000196236.8|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
hg19_v2_chr15_+_91478493_91478551	0.114349	GLI3	ENST00000418476.2|UNC45A|ENSG00000140553.12|unc-45 homolog A (C. elegans)
hg19_v2_chr19_-_18197799_18197815	0.113926	GLI3	ENST00000430026.3|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1 	ENST00000593993.2|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr17_-_6554877_6554954	0.112854	GLI3	ENST00000225728.3|MED31|ENSG00000108590.6|mediator complex subunit 31 	ENST00000575197.1|MED31|ENSG00000108590.6|mediator complex subunit 31
hg19_v2_chr15_+_49462434_49462488	0.112223	GLI3	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr1_+_87170277_87170315	0.111743	GLI3	ENST00000535010.1|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr7_-_143059845_143059866	0.111463	GLI3	ENST00000443739.2|FAM131B|ENSG00000159784.13|family with sequence similarity 131, member B
hg19_v2_chr22_+_39436862_39436924	0.110867	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr4_+_41992489_41992561	0.110392	GLI3	ENST00000264451.7|SLC30A9|ENSG00000014824.9|solute carrier family 30 (zinc transporter), member 9
hg19_v2_chr17_+_7184986_7185076	0.108967	GLI3	ENST00000317370.8|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4 	ENST00000571308.1|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4
hg19_v2_chr1_+_63833261_63833282	0.108597	GLI3	ENST00000371108.4|ALG6|ENSG00000088035.11|ALG6, alpha-1,3-glucosyltransferase
hg19_v2_chrX_-_9001351_9001351	0.10824	GLI3	ENST00000362066.3|FAM9B|ENSG00000177138.11|family with sequence similarity 9, member B
hg19_v2_chr1_-_40349106_40349184	0.107794	GLI3	ENST00000545233.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537440.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537223.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000541099.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000441669.2|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000544981.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000316891.5|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000372818.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1
hg19_v2_chr8_+_21899898_21899937	0.107574	GLI3	ENST00000518533.1|FGF17|ENSG00000158815.6|fibroblast growth factor 17 	ENST00000359441.3|FGF17|ENSG00000158815.6|fibroblast growth factor 17
hg19_v2_chr1_-_38273840_38273888	0.105959	GLI3	ENST00000373044.2|YRDC|ENSG00000196449.3|yrdC N(6)-threonylcarbamoyltransferase domain containing
hg19_v2_chr10_-_28571015_28571067	0.105814	GLI3	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr2_+_171673072_171673225	0.105356	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr6_+_29427548_29427548	0.105077	GLI3	ENST00000377132.1|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr6_+_31465892_31465937	0.104568	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr15_-_78933567_78933604	0.104547	GLI3	ENST00000261751.3|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal) 	ENST00000412074.2|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal)
hg19_v2_chr11_-_111783595_111783651	0.104506	GLI3	ENST00000528628.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr11_+_118477144_118477156	0.104288	GLI3	ENST00000361417.2|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr17_-_17494972_17495037	0.104103	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr1_-_35450897_35450954	0.104067	GLI3	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr10_+_1034646_1034660	0.103558	GLI3	ENST00000360059.5|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000545048.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr5_-_850676_850720	0.102608	GLI3	ENST00000424784.2|ZDHHC11|ENSG00000188818.8|zinc finger, DHHC-type containing 11
hg19_v2_chr19_+_49496782_49496873	0.10231	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chr4_-_170948361_170948375	0.101173	GLI3	ENST00000393702.3|MFAP3L|ENSG00000198948.7|microfibrillar-associated protein 3-like
hg19_v2_chr17_+_73089382_73089451	0.100941	GLI3	ENST00000538213.2|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000584118.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chrX_+_23682379_23682401	0.100894	GLI3	ENST00000379349.1|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr11_-_117103208_117103288	0.100227	GLI3	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr16_-_86588627_86588848	0.100115	GLI3	ENST00000565482.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000564364.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000561989.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000543303.2|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000381214.5|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000360900.6|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000322911.6|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000546093.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000569000.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000562994.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000561522.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing
hg19_v2_chr14_-_101295407_101295537	0.100072	GLI3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr4_-_7069760_7069924	0.0999913	GLI3	ENST00000264954.4|GRPEL1|ENSG00000109519.8|GrpE-like 1, mitochondrial (E. coli)
hg19_v2_chr5_+_218356_218453	0.0999407	GLI3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr10_-_75173785_75173844	0.0998756	GLI3	ENST00000535178.1|ANXA7|ENSG00000138279.11|annexin A7 	ENST00000372921.5|ANXA7|ENSG00000138279.11|annexin A7 	ENST00000372919.4|ANXA7|ENSG00000138279.11|annexin A7
hg19_v2_chr9_+_21440440_21440440	0.099389	GLI3	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr12_+_50355647_50355661	0.0992746	GLI3	ENST00000293599.6|AQP5|ENSG00000161798.6|aquaporin 5
hg19_v2_chr6_+_31465849_31465863	0.0987076	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr17_+_66243715_66243829	0.0986187	GLI3	ENST00000359904.3|AMZ2|ENSG00000196704.7|archaelysin family metallopeptidase 2
hg19_v2_chr1_+_207669613_207669686	0.098205	GLI3	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr10_-_62332357_62332428	0.0979301	GLI3	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr15_+_84116106_84116283	0.0976657	GLI3	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr2_+_131769256_131769328	0.0971841	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr17_+_4710391_4710500	0.0968622	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr19_+_30863271_30863338	0.0966634	GLI3	ENST00000355537.3|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr6_-_33281979_33281992	0.0960164	GLI3	ENST00000426633.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000467025.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr11_+_89764274_89764274	0.0959976	GLI3	ENST00000448984.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C 	ENST00000432771.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C
hg19_v2_chr3_+_50388126_50388328	0.0958817	GLI3	ENST00000425346.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000424512.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000232508.5|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000418577.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000606589.1|XXcos-LUCA11.5|ENSG00000272104.1|Uncharacterized protein
hg19_v2_chr17_-_2207062_2207116	0.0947357	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr19_-_17185848_17186010	0.0945328	GLI3	ENST00000593360.1|HAUS8|ENSG00000131351.10|HAUS augmin-like complex, subunit 8
hg19_v2_chr5_+_10250328_10250362	0.0944324	GLI3	ENST00000515390.1|CCT5|ENSG00000150753.7|chaperonin containing TCP1, subunit 5 (epsilon)
hg19_v2_chr2_+_233390890_233390903	0.094227	GLI3	ENST00000258385.3|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000536614.1|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000457943.2|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle)
hg19_v2_chr1_+_15480197_15480285	0.094192	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr8_+_133931648_133931685	0.0937087	GLI3	ENST00000519178.1|TG|ENSG00000042832.7|thyroglobulin 	ENST00000542445.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr8_+_94752349_94752349	0.0929608	GLI3	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chrX_-_11308598_11308610	0.0924147	GLI3	ENST00000380717.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr11_-_117186946_117186981	0.0916706	GLI3	ENST00000313005.6|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1 	ENST00000528053.1|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1
hg19_v2_chr1_+_25664408_25664408	0.0913894	GLI3	ENST00000374358.4|TMEM50A|ENSG00000183726.6|transmembrane protein 50A
hg19_v2_chr3_+_58291965_58292038	0.0911915	GLI3	ENST00000445193.3|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit 	ENST00000295959.5|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit 	ENST00000466547.1|RPP14|ENSG00000163684.7|ribonuclease P/MRP 14kDa subunit
hg19_v2_chr1_-_156722015_156722034	0.0906775	GLI3	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr6_-_163148780_163148813	0.0903084	GLI3	ENST00000366892.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366898.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366897.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366896.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase
hg19_v2_chr8_+_22857048_22857092	0.0901476	GLI3	ENST00000251822.6|RHOBTB2|ENSG00000008853.12|Rho-related BTB domain containing 2
hg19_v2_chr1_+_202091980_202091991	0.0891879	GLI3	ENST00000367282.5|GPR37L1|ENSG00000170075.8|G protein-coupled receptor 37 like 1
hg19_v2_chr11_+_64053005_64053171	0.0884825	GLI3	ENST00000538032.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chrX_+_70364667_70364721	0.0875376	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr13_+_50571155_50571229	0.0873384	GLI3	ENST00000420995.2|TRIM13|ENSG00000204977.5|tripartite motif containing 13 	ENST00000378182.3|TRIM13|ENSG00000204977.5|tripartite motif containing 13 	ENST00000356017.4|TRIM13|ENSG00000204977.5|tripartite motif containing 13 	ENST00000457662.2|TRIM13|ENSG00000204977.5|tripartite motif containing 13
hg19_v2_chr17_+_8339189_8339285	0.0872828	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr9_-_127952187_127952218	0.0871029	GLI3	ENST00000451402.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000415905.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr2_+_217363793_217363823	0.0870416	GLI3	ENST00000456586.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000598925.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000427280.2|RPL37A|ENSG00000197756.5|ribosomal protein L37a
hg19_v2_chr3_+_195384929_195384964	0.0868886	GLI3	ENST00000457233.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539252.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000452844.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000429897.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539717.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000453324.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000445430.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000414625.2|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000425425.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969
hg19_v2_chr2_+_102928009_102928033	0.0866139	GLI3	ENST00000404917.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000447231.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr6_-_30181156_30181209	0.0862401	GLI3	ENST00000418026.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000416596.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000453195.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr3_+_46204959_46205096	0.086091	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.10|chemokine (C-C motif) receptor 3
hg19_v2_chr1_-_2343951_2344018	0.0858934	GLI3	ENST00000288774.3|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000507596.1|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10 	ENST00000447513.2|PEX10|ENSG00000157911.5|peroxisomal biogenesis factor 10
hg19_v2_chr17_+_7905912_7905945	0.085824	GLI3	ENST00000254854.4|GUCY2D|ENSG00000132518.6|guanylate cyclase 2D, membrane (retina-specific)
hg19_v2_chr5_+_175490540_175490540	0.0851278	GLI3	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr17_-_21117902_21117937	0.0846074	GLI3	ENST00000317635.5|TMEM11|ENSG00000178307.5|transmembrane protein 11
hg19_v2_chr19_+_49999631_49999711	0.08438	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr17_+_7788104_7788138	0.0841405	GLI3	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chr6_-_34073743_34073761	0.0839902	GLI3	ENST00000609222.1|GRM4|ENSG00000124493.9|glutamate receptor, metabotropic 4
hg19_v2_chr1_+_201951741_201951794	0.0837172	GLI3	ENST00000295640.4|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B) 	ENST00000367286.3|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B)
hg19_v2_chr17_+_4736627_4736720	0.0835198	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr1_+_92414928_92414944	0.0834153	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr12_-_11463353_11463372	0.0829901	GLI3	ENST00000279575.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000535904.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000445719.2|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4
hg19_v2_chr3_-_128902759_128902770	0.0828573	GLI3	ENST00000422453.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000504813.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000512338.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr19_-_3869012_3869041	0.0825774	GLI3	ENST00000592398.1|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000262961.4|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000439086.2|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2
hg19_v2_chr9_-_127952032_127952098	0.0822841	GLI3	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr5_-_43412418_43412499	0.0813306	GLI3	ENST00000537013.1|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28 	ENST00000361115.4|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28
hg19_v2_chr1_+_15764931_15764945	0.0812523	GLI3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr22_+_41487711_41487798	0.0811668	GLI3	ENST00000263253.7|EP300|ENSG00000100393.9|E1A binding protein p300
hg19_v2_chr11_-_3078616_3078667	0.0809248	GLI3	ENST00000401769.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000278224.9|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000397114.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000380525.4|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase
hg19_v2_chr15_-_90892669_90892669	0.0808017	GLI3	ENST00000412799.2|GABARAPL3|ENSG00000238244.2|GABA(A) receptors associated protein like 3, pseudogene
hg19_v2_chr1_-_227922934_227923112	0.0807462	GLI3	ENST00000366758.3|JMJD4|ENSG00000081692.8|jumonji domain containing 4 	ENST00000438896.2|JMJD4|ENSG00000081692.8|jumonji domain containing 4
hg19_v2_chr2_+_233390863_233390878	0.0807145	GLI3	ENST00000449596.1|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle) 	ENST00000543200.1|CHRND|ENSG00000135902.5|cholinergic receptor, nicotinic, delta (muscle)
hg19_v2_chr7_-_131241361_131241398	0.0806153	GLI3	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr16_+_2079501_2079528	0.0806115	GLI3	ENST00000563587.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr15_-_31453359_31453476	0.080466	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr11_-_77122928_77123045	0.080259	GLI3	ENST00000528203.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000528592.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000528633.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1 	ENST00000529248.1|PAK1|ENSG00000149269.5|p21 protein (Cdc42/Rac)-activated kinase 1
hg19_v2_chr11_+_2482661_2482675	0.0789533	GLI3	ENST00000335475.5|KCNQ1|ENSG00000053918.11|potassium voltage-gated channel, KQT-like subfamily, member 1
hg19_v2_chr6_-_30181133_30181150	0.0788059	GLI3	ENST00000454678.2|TRIM26|ENSG00000234127.4|tripartite motif containing 26 	ENST00000434785.1|TRIM26|ENSG00000234127.4|tripartite motif containing 26
hg19_v2_chr18_-_44556449_44556449	0.0787937	GLI3	ENST00000330682.2|TCEB3C|ENSG00000183791.4|transcription elongation factor B polypeptide 3C (elongin A3)
hg19_v2_chrX_-_34675391_34675411	0.0781038	GLI3	ENST00000275954.3|TMEM47|ENSG00000147027.3|transmembrane protein 47
hg19_v2_chr2_+_187350883_187350962	0.0777072	GLI3	ENST00000337859.6|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr19_+_44220247_44220265	0.0773951	GLI3	ENST00000596627.1|IRGC|ENSG00000124449.6|immunity-related GTPase family, cinema
hg19_v2_chr17_+_61554413_61554434	0.0769879	GLI3	ENST00000538928.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000290866.4|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000428043.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme
hg19_v2_chr16_-_17564738_17564834	0.0760096	GLI3	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr14_+_50291993_50291993	0.0754065	GLI3	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr1_+_202995611_202995680	0.0751254	GLI3	ENST00000367240.2|PPFIA4|ENSG00000143847.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
hg19_v2_chr14_+_102027688_102027833	0.0750982	GLI3	ENST00000510508.4|DIO3|ENSG00000197406.6|deiodinase, iodothyronine, type III 	ENST00000359323.3|DIO3|ENSG00000197406.6|deiodinase, iodothyronine, type III
hg19_v2_chr17_-_42019836_42019844	0.0749044	GLI3	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr1_-_47407136_47407154	0.0746873	GLI3	ENST00000462347.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000371905.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000310638.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr16_+_55690205_55690352	0.0746077	GLI3	ENST00000379906.2|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr15_+_69452959_69452987	0.0742593	GLI3	ENST00000261858.2|GLCE|ENSG00000138604.5|glucuronic acid epimerase
hg19_v2_chr2_+_131975882_131975924	0.0738709	GLI3	ENST00000356920.5|POTEE|ENSG00000188219.10|POTE ankyrin domain family, member E 	ENST00000358087.5|POTEE|ENSG00000188219.10|POTE ankyrin domain family, member E
hg19_v2_chr22_-_46373004_46373016	0.0732772	GLI3	ENST00000339464.4|WNT7B|ENSG00000188064.5|wingless-type MMTV integration site family, member 7B
hg19_v2_chr1_+_180897269_180897295	0.0730652	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr2_+_131862900_131862926	0.0729777	GLI3	ENST00000438882.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000538982.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000404460.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr4_-_89080003_89080075	0.0721165	GLI3	ENST00000237612.3|ABCG2|ENSG00000118777.6|ATP-binding cassette, sub-family G (WHITE), member 2
hg19_v2_chr20_-_23731893_23731920	0.0720371	GLI3	ENST00000398402.1|CST1|ENSG00000170373.4|cystatin SN
hg19_v2_chr8_+_140943416_140943416	0.0718028	GLI3	ENST00000507535.3|C8orf17|ENSG00000250733.3|chromosome 8 open reading frame 17
hg19_v2_chr2_+_201170770_201170882	0.0714072	GLI3	ENST00000409988.3|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409385.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr4_+_40194609_40194616	0.0713259	GLI3	ENST00000508513.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr16_+_89988259_89988354	0.0708517	GLI3	ENST00000554444.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000556565.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr19_-_49552006_49552006	0.0707449	GLI3	ENST00000391869.3|CGB1|ENSG00000267631.3|chorionic gonadotropin, beta polypeptide 1
hg19_v2_chr20_-_30310693_30310719	0.0705799	GLI3	ENST00000307677.4|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420653.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr11_-_111383064_111383092	0.0701959	GLI3	ENST00000525791.1|BTG4|ENSG00000137707.9|B-cell translocation gene 4 	ENST00000456861.2|BTG4|ENSG00000137707.9|B-cell translocation gene 4 	ENST00000356018.2|BTG4|ENSG00000137707.9|B-cell translocation gene 4
hg19_v2_chr22_+_25595817_25595840	0.0699034	GLI3	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr17_-_42031300_42031313	0.0693902	GLI3	ENST00000592796.1|PYY|ENSG00000131096.6|peptide YY
hg19_v2_chrX_+_15525426_15525441	0.0692354	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr19_-_2050852_2050895	0.0691073	GLI3	ENST00000541165.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000591601.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr7_+_100860949_100860983	0.0688092	GLI3	ENST00000305105.2|ZNHIT1|ENSG00000106400.7|zinc finger, HIT-type containing 1
hg19_v2_chrX_+_1733876_1733894	0.0684447	GLI3	ENST00000381241.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr1_-_31661000_31661000	0.0683027	GLI3	ENST00000263693.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000398657.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000526106.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr9_-_139334247_139334302	0.0681425	GLI3	ENST00000371712.3|INPP5E|ENSG00000148384.11|inositol polyphosphate-5-phosphatase, 72 kDa
hg19_v2_chr4_-_74847800_74847841	0.0678422	GLI3	ENST00000296029.3|PF4|ENSG00000163737.3|platelet factor 4
hg19_v2_chrX_+_17755563_17755618	0.0677629	GLI3	ENST00000380045.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380041.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380043.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000398080.1|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila)
hg19_v2_chr20_-_36793663_36793735	0.067725	GLI3	ENST00000536701.1|TGM2|ENSG00000198959.7|transglutaminase 2 	ENST00000536724.1|TGM2|ENSG00000198959.7|transglutaminase 2
hg19_v2_chr19_+_55085248_55085346	0.0676445	GLI3	ENST00000391738.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000251376.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000391737.1|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000396321.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000418536.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000448689.1|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1
hg19_v2_chr11_+_1940786_1940799	0.0674313	GLI3	ENST00000278317.6|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381561.4|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381548.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000360603.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast) 	ENST00000381549.3|TNNT3|ENSG00000130595.12|troponin T type 3 (skeletal, fast)
hg19_v2_chr16_-_88923285_88923388	0.0673044	GLI3	ENST00000542788.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000569433.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000268695.5|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000568311.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase
hg19_v2_chr3_+_11314099_11314122	0.0670145	GLI3	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr8_-_86290333_86290348	0.0665267	GLI3	ENST00000521846.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523022.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000524324.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519991.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000520663.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517590.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522579.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522814.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522662.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523858.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519129.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr14_+_96968802_96968895	0.0653168	GLI3	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr22_-_18507279_18507364	0.065119	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr19_-_40596767_40596825	0.0650509	GLI3	ENST00000599972.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000450241.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000595687.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A
hg19_v2_chr10_+_115312766_115312786	0.064956	GLI3	ENST00000351270.3|HABP2|ENSG00000148702.10|hyaluronan binding protein 2
hg19_v2_chr11_-_73587719_73588033	0.0647777	GLI3	ENST00000545127.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000537289.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000355693.4|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
hg19_v2_chrX_+_1734051_1734068	0.0641243	GLI3	ENST00000381229.4|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase 	ENST00000381233.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr11_-_65363259_65363279	0.0640653	GLI3	ENST00000342202.4|KCNK7|ENSG00000173338.8|potassium channel, subfamily K, member 7
hg19_v2_chr8_-_98290087_98290197	0.0635683	GLI3	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr19_+_58978463_58978476	0.0633704	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chr15_-_64665911_64665980	0.0633373	GLI3	ENST00000606793.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000561349.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000560278.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein
hg19_v2_chr12_-_112847354_112847457	0.0633091	GLI3	ENST00000550566.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000553213.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000424576.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000202773.9|RPL6|ENSG00000089009.11|ribosomal protein L6
hg19_v2_chr10_-_48416849_48416859	0.0632063	GLI3	ENST00000249598.1|GDF2|ENSG00000128802.3|growth differentiation factor 2
hg19_v2_chr15_-_43877062_43877090	0.0624089	GLI3	ENST00000381885.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1 	ENST00000396923.3|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
hg19_v2_chr12_-_8218997_8219067	0.0623055	GLI3	ENST00000307637.4|C3AR1|ENSG00000171860.4|complement component 3a receptor 1
hg19_v2_chr1_+_32671236_32671280	0.0619175	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr10_-_79398127_79398156	0.0618448	GLI3	ENST00000372443.1|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr22_+_45559722_45559881	0.061491	GLI3	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr9_-_139371533_139371567	0.0611765	GLI3	ENST00000290037.6|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000431893.2|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000371706.3|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr1_-_151798546_151798590	0.0607921	GLI3	ENST00000356728.6|RORC|ENSG00000143365.12|RAR-related orphan receptor C
hg19_v2_chr7_-_44180884_44180937	0.0607587	GLI3	ENST00000458240.1|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory 	ENST00000223364.3|MYL7|ENSG00000106631.4|myosin, light chain 7, regulatory
hg19_v2_chr6_+_34204642_34204664	0.0605367	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr13_+_115000521_115000536	0.0603198	GLI3	ENST00000252457.5|CDC16|ENSG00000130177.10|cell division cycle 16 	ENST00000375308.1|CDC16|ENSG00000130177.10|cell division cycle 16
hg19_v2_chr2_+_231921574_231921639	0.0602284	GLI3	ENST00000308696.6|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000373635.4|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000440838.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 	ENST00000409643.1|PSMD1|ENSG00000173692.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
hg19_v2_chr19_+_58740266_58740341	0.0595453	GLI3	ENST00000597240.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000594384.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000596825.1|ZNF544|ENSG00000198131.9|zinc finger protein 544
hg19_v2_chr19_-_19754404_19754478	0.0590972	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr19_+_7733929_7733950	0.0589759	GLI3	ENST00000221515.2|RETN|ENSG00000104918.4|resistin
hg19_v2_chr12_+_125549925_125549956	0.0586644	GLI3	ENST00000316519.6|AACS|ENSG00000081760.12|acetoacetyl-CoA synthetase
hg19_v2_chr2_+_25015968_25016029	0.0584486	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr4_-_5021164_5021199	0.0581716	GLI3	ENST00000506508.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000509419.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000307746.4|CYTL1|ENSG00000170891.6|cytokine-like 1
hg19_v2_chr8_-_17533838_17533865	0.0580985	GLI3	ENST00000400046.1|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr21_-_27107344_27107357	0.0578697	GLI3	ENST00000457143.2|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr19_-_40596828_40596855	0.0575403	GLI3	ENST00000414720.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000455521.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000340963.5|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000595773.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A
hg19_v2_chr1_+_104198377_104198377	0.0573119	GLI3	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr15_-_65809581_65809617	0.0571639	GLI3	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr19_+_55385731_55385746	0.0568778	GLI3	ENST00000469767.1|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000355524.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391725.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000345937.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000353758.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000359272.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391723.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391724.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr17_+_42219383_42219424	0.0562065	GLI3	ENST00000245382.6|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53
hg19_v2_chr20_-_30310656_30310685	0.0561653	GLI3	ENST00000376055.4|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr7_+_100187196_100187252	0.0559848	GLI3	ENST00000468962.1|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000427939.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr17_-_15522826_15522826	0.0558023	GLI3	ENST00000395906.3|CDRT1|ENSG00000241322.4|CMT1A duplicated region transcript 1
hg19_v2_chr17_-_62502399_62502411	0.0556021	GLI3	ENST00000450599.2|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000585060.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr3_-_38992052_38992052	0.0555763	GLI3	ENST00000302328.3|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000450244.1|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000444237.2|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit
hg19_v2_chr1_+_150229554_150229660	0.054949	GLI3	ENST00000369111.4|CA14|ENSG00000118298.6|carbonic anhydrase XIV
hg19_v2_chr22_+_38349670_38349723	0.0540971	GLI3	ENST00000442738.2|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000460648.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000407936.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000488684.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000492213.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000606538.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000405557.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr7_+_5919458_5919458	0.0538592	GLI3	ENST00000416608.1|OCM|ENSG00000122543.6|oncomodulin
hg19_v2_chr17_-_80231557_80231607	0.0533915	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr19_-_344786_344826	0.0530705	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr14_+_71374433_71374456	0.0525058	GLI3	ENST00000439984.3|PCNX|ENSG00000100731.11|pecanex homolog (Drosophila)
hg19_v2_chr11_+_66247478_66247503	0.0520305	GLI3	ENST00000531863.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3 	ENST00000532677.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3
hg19_v2_chr1_+_209757051_209757074	0.0517957	GLI3	ENST00000009105.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000423146.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000361322.2|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG
hg19_v2_chr15_-_65810042_65810058	0.0511501	GLI3	ENST00000321147.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr1_+_202976493_202976530	0.051065	GLI3	ENST00000367242.3|TMEM183A|ENSG00000163444.7|transmembrane protein 183A
hg19_v2_chr14_+_89029366_89029478	0.0508567	GLI3	ENST00000555799.1|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14 	ENST00000555755.1|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14 	ENST00000393514.5|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14
hg19_v2_chr1_+_63788730_63788730	0.0504922	GLI3	ENST00000371116.2|FOXD3|ENSG00000187140.4|forkhead box D3
hg19_v2_chrX_+_153448107_153448107	0.0503844	GLI3	ENST00000369935.5|OPN1MW|ENSG00000147380.6|opsin 1 (cone pigments), medium-wave-sensitive
hg19_v2_chr11_+_60197040_60197062	0.0495737	GLI3	ENST00000300190.2|MS4A5|ENSG00000166930.2|membrane-spanning 4-domains, subfamily A, member 5
hg19_v2_chr13_+_49822041_49822184	0.0494631	GLI3	ENST00000538056.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000251108.6|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000444959.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000429346.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1
hg19_v2_chr19_+_36024310_36024329	0.0492881	GLI3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr5_-_43483929_43484002	0.0490283	GLI3	ENST00000500337.2|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000506860.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000510130.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000397080.3|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000512085.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28
hg19_v2_chr19_-_54746600_54746649	0.0490003	GLI3	ENST00000245621.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000407860.2|LILRB3|ENSG00000204577.7|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 	ENST00000270464.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000419410.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000391735.3|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000396365.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000440558.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
hg19_v2_chr5_-_95297534_95297563	0.0487424	GLI3	ENST00000513343.1|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2 	ENST00000431061.2|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr7_-_2883928_2883993	0.0478629	GLI3	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr16_-_850723_850741	0.0475962	GLI3	ENST00000248150.4|GNG13|ENSG00000127588.4|guanine nucleotide binding protein (G protein), gamma 13
hg19_v2_chr17_-_79633590_79633678	0.0475192	GLI3	ENST00000374741.3|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1 	ENST00000571503.1|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1
hg19_v2_chr9_+_87285539_87285575	0.0474106	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr9_-_21368075_21368075	0.0466727	GLI3	ENST00000449498.1|IFNA13|ENSG00000233816.2|interferon, alpha 13
hg19_v2_chr6_+_43739697_43739752	0.0466562	GLI3	ENST00000230480.6|VEGFA|ENSG00000112715.16|vascular endothelial growth factor A
hg19_v2_chr22_-_30234218_30234276	0.0464914	GLI3	ENST00000307790.3|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000542393.1|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000397771.2|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2
hg19_v2_chr15_-_78526942_78527049	0.0459446	GLI3	ENST00000258873.4|ACSBG1|ENSG00000103740.5|acyl-CoA synthetase bubblegum family member 1
hg19_v2_chr12_-_53171128_53171131	0.0455996	GLI3	ENST00000332411.2|KRT76|ENSG00000185069.2|keratin 76
hg19_v2_chr21_-_27107283_27107338	0.0454676	GLI3	ENST00000284971.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400099.1|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr1_+_9005917_9005946	0.045349	GLI3	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr12_-_48099754_48099769	0.0443919	GLI3	ENST00000380650.4|RPAP3|ENSG00000005175.5|RNA polymerase II associated protein 3
hg19_v2_chr2_-_17935059_17935102	0.0441862	GLI3	ENST00000448223.2|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000381272.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000351948.4|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr11_-_36310958_36310999	0.0440952	GLI3	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr10_+_1034338_1034411	0.0428036	GLI3	ENST00000360803.4|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000538293.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr9_+_131452239_131452285	0.0423468	GLI3	ENST00000372688.4|SET|ENSG00000119335.12|SET nuclear oncogene 	ENST00000372686.5|SET|ENSG00000119335.12|SET nuclear oncogene
hg19_v2_chr2_+_111490161_111490216	0.042133	GLI3	ENST00000340561.4|ACOXL|ENSG00000153093.14|acyl-CoA oxidase-like
hg19_v2_chrX_-_53254358_53254406	0.041687	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr6_+_43457317_43457360	0.0415793	GLI3	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr1_-_16563641_16563709	0.03974	GLI3	ENST00000375599.3|RSG1|ENSG00000132881.7|REM2 and RAB-like small GTPase 1
hg19_v2_chr15_-_41120896_41120922	0.0396875	GLI3	ENST00000299174.5|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D 	ENST00000427255.2|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D
hg19_v2_chr6_+_3849584_3849631	0.0391698	GLI3	ENST00000380274.1|FAM50B|ENSG00000145945.5|family with sequence similarity 50, member B 	ENST00000380272.3|FAM50B|ENSG00000145945.5|family with sequence similarity 50, member B
hg19_v2_chr9_+_131873227_131873243	0.0391006	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr1_+_170904612_170904677	0.0386587	GLI3	ENST00000367759.4|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9 	ENST00000367758.3|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9
hg19_v2_chr11_+_60739249_60739338	0.0384083	GLI3	ENST00000542157.1|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000433107.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000452451.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000352009.5|CD6|ENSG00000013725.10|CD6 molecule
hg19_v2_chr12_+_1800179_1800250	0.0383072	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr6_-_168479839_168479904	0.0381089	GLI3	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr3_+_63897605_63897797	0.0380219	GLI3	ENST00000487717.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr19_+_40697514_40697651	0.0375029	GLI3	ENST00000253055.3|MAP3K10|ENSG00000130758.3|mitogen-activated protein kinase kinase kinase 10
hg19_v2_chr4_-_176733897_176733906	0.0375015	GLI3	ENST00000393658.2|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr1_+_87170247_87170276	0.0374555	GLI3	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr10_+_105156364_105156448	0.0373928	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chrX_+_2984874_2984874	0.0373802	GLI3	ENST00000359361.2|ARSF|ENSG00000062096.10|arylsulfatase F
hg19_v2_chrX_+_153170189_153170189	0.0371214	GLI3	ENST00000358927.2|AVPR2|ENSG00000126895.9|arginine vasopressin receptor 2
hg19_v2_chr19_+_7598890_7599090	0.0365093	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr19_-_59023348_59023432	0.0364178	GLI3	ENST00000601355.1|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5 	ENST00000263093.2|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5
hg19_v2_chr1_+_25071848_25071944	0.0351879	GLI3	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr15_-_102192567_102192597	0.0350229	GLI3	ENST00000333202.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000428002.2|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000559107.1|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000347970.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3
hg19_v2_chr8_-_22526597_22526661	0.0348581	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr12_+_50366620_50366735	0.0343403	GLI3	ENST00000315520.5|AQP6|ENSG00000086159.8|aquaporin 6, kidney specific
hg19_v2_chr1_-_157108130_157108173	0.0341239	GLI3	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr20_+_33814457_33814506	0.0340796	GLI3	ENST00000246186.6|MMP24|ENSG00000125966.8|matrix metallopeptidase 24 (membrane-inserted)
hg19_v2_chr3_+_128997798_128997851	0.034058	GLI3	ENST00000502878.2|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000389735.3|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000509551.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000511665.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific
hg19_v2_chr5_+_161495038_161495056	0.0340506	GLI3	ENST00000393933.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr11_+_68451943_68451986	0.033764	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr9_-_35958151_35958151	0.0337419	GLI3	ENST00000341959.2|OR2S2|ENSG00000122718.4|olfactory receptor, family 2, subfamily S, member 2
hg19_v2_chr3_+_32993065_32993074	0.0333727	GLI3	ENST00000330953.5|CCR4|ENSG00000183813.6|chemokine (C-C motif) receptor 4
hg19_v2_chr18_-_44544607_44544607	0.033296	GLI3	ENST00000591973.2|TCEB3CL2|ENSG00000266996.2|transcription elongation factor B polypeptide 3C-like 2
hg19_v2_chr14_+_89029336_89029363	0.0332265	GLI3	ENST00000556945.1|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14 	ENST00000556158.1|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14 	ENST00000557607.1|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14
hg19_v2_chr2_-_201936302_201936416	0.0332139	GLI3	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr12_-_45269430_45269440	0.0324467	GLI3	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr11_-_113346111_113346125	0.0319728	GLI3	ENST00000362072.3|DRD2|ENSG00000149295.9|dopamine receptor D2
hg19_v2_chr2_-_48982708_48982837	0.0318697	GLI3	ENST00000428232.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000405626.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000294954.7|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor
hg19_v2_chr12_+_123464607_123464873	0.0317024	GLI3	ENST00000543566.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000315580.5|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000542099.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000392435.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000413381.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000426960.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000453766.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4
hg19_v2_chr9_-_35112376_35112395	0.0315366	GLI3	ENST00000488109.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr19_-_10679644_10679661	0.0315014	GLI3	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr19_+_36208877_36208921	0.0312575	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr12_+_113354341_113354422	0.0305302	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr21_+_48055527_48055608	0.0303967	GLI3	ENST00000397638.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000458387.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000451211.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000291705.6|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397637.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000334494.4|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397628.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000440086.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2
hg19_v2_chr3_-_38691119_38691203	0.0300148	GLI3	ENST00000333535.4|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000413689.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000443581.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000425664.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000451551.2|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit
hg19_v2_chr20_-_52687059_52687143	0.029874	GLI3	ENST00000371435.2|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1 	ENST00000395961.3|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1
hg19_v2_chr7_+_2636522_2636546	0.0294051	GLI3	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr19_-_2051223_2051252	0.0292091	GLI3	ENST00000309340.7|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589534.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000250896.3|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589509.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr19_-_16653325_16653358	0.0291191	GLI3	ENST00000546361.2|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr19_-_40324255_40324296	0.0290641	GLI3	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr16_-_4466622_4466665	0.028809	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr19_-_51340469_51340469	0.0287351	GLI3	ENST00000326856.4|KLK15|ENSG00000174562.9|kallikrein-related peptidase 15
hg19_v2_chr19_-_16008880_16008930	0.0286264	GLI3	ENST00000011989.7|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2 	ENST00000221700.6|CYP4F2|ENSG00000186115.8|cytochrome P450, family 4, subfamily F, polypeptide 2
hg19_v2_chr11_+_68228186_68228281	0.0285931	GLI3	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr3_-_196756646_196756725	0.0285563	GLI3	ENST00000439320.1|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296351.4|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296350.5|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
hg19_v2_chr17_+_42219267_42219329	0.0285108	GLI3	ENST00000319977.4|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53 	ENST00000585683.1|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53
hg19_v2_chr6_-_31763721_31763734	0.0282849	GLI3	ENST00000375663.3|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr1_+_207226574_207226656	0.0278395	GLI3	ENST00000367080.3|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 	ENST00000367079.2|PFKFB2|ENSG00000123836.10|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
hg19_v2_chr10_+_70939983_70940044	0.0275732	GLI3	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr8_-_6795823_6795860	0.0271699	GLI3	ENST00000297435.2|DEFA4|ENSG00000164821.4|defensin, alpha 4, corticostatin
hg19_v2_chr11_+_64052944_64052986	0.0266367	GLI3	ENST00000535675.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137 	ENST00000543383.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr19_+_44100727_44100804	0.0264837	GLI3	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr19_+_9434841_9435021	0.0260648	GLI3	ENST00000446085.4|ZNF177|ENSG00000270011.2|ZNF559-ZNF177 readthrough 	ENST00000592504.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000585352.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000317221.7|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000586255.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000592896.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000605750.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000603380.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000538743.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000589208.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000592298.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000585377.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000393883.2|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000603656.1|ZNF177|ENSG00000270011.2|ZNF559-ZNF177 readthrough 	ENST00000588124.1|ZNF559|ENSG00000188321.9|zinc finger protein 559 	ENST00000541595.2|ZNF177|ENSG00000270011.2|ZNF559-ZNF177 readthrough 	ENST00000602738.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr22_-_20004330_20004364	0.0257581	GLI3	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr5_-_95297678_95297775	0.0255456	GLI3	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr4_+_159593271_159593295	0.025038	GLI3	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr5_-_132113036_132113061	0.0244655	GLI3	ENST00000378706.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr17_-_26127525_26127556	0.0241771	GLI3	ENST00000313735.6|NOS2|ENSG00000007171.12|nitric oxide synthase 2, inducible
hg19_v2_chrX_+_55026763_55026831	0.0240131	GLI3	ENST00000374987.3|APEX2|ENSG00000169188.4|APEX nuclease (apurinic/apyrimidinic endonuclease) 2
hg19_v2_chr2_-_96781984_96781984	0.0237367	GLI3	ENST00000409345.3|ADRA2B|ENSG00000222040.3|adrenoceptor alpha 2B
hg19_v2_chr19_+_40477062_40477112	0.0236656	GLI3	ENST00000455878.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr20_-_39946237_39946356	0.0236147	GLI3	ENST00000441102.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000559234.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr6_+_31674639_31674681	0.0234548	GLI3	ENST00000556581.1|LY6G6F|ENSG00000204424.8|lymphocyte antigen 6 complex, locus G6F 	ENST00000375832.4|LY6G6F|ENSG00000204424.8|lymphocyte antigen 6 complex, locus G6F 	ENST00000503322.1|MEGT1|ENSG00000250641.1|HCG43720, isoform CRA_a; Lymphocyte antigen 6 complex locus protein G6f; Megakaryocyte-enhanced gene transcript 1 protein; Uncharacterized protein
hg19_v2_chr11_-_111784005_111784071	0.0230969	GLI3	ENST00000527899.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr1_+_27114589_27114712	0.0229007	GLI3	ENST00000431541.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000449950.2|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000374145.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chrX_-_48216101_48216142	0.0225593	GLI3	ENST00000298396.2|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3 	ENST00000376893.3|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3
hg19_v2_chr17_+_6899366_6899384	0.0224772	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr4_+_110354928_110355030	0.0220413	GLI3	ENST00000504968.2|SEC24B|ENSG00000138802.7|SEC24 family member B 	ENST00000399100.2|SEC24B|ENSG00000138802.7|SEC24 family member B 	ENST00000265175.5|SEC24B|ENSG00000138802.7|SEC24 family member B
hg19_v2_chr7_+_23145884_23145917	0.0214156	GLI3	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr17_+_46018872_46019006	0.0210974	GLI3	ENST00000583599.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000434554.2|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000225573.4|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000544840.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000534893.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase
hg19_v2_chr6_+_163148161_163148181	0.0209274	GLI3	ENST00000337019.3|PACRG|ENSG00000112530.7|PARK2 co-regulated 	ENST00000366889.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr16_-_20817753_20817816	0.0206471	GLI3	ENST00000389345.5|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000300005.3|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000357967.4|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000569729.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2
hg19_v2_chr20_+_36149602_36149665	0.0206115	GLI3	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr5_-_156569754_156569786	0.0205164	GLI3	ENST00000420343.1|MED7|ENSG00000155868.7|mediator complex subunit 7
hg19_v2_chr21_-_38445011_38445200	0.020226	GLI3	ENST00000464265.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P 	ENST00000399102.1|PIGP|ENSG00000185808.9|phosphatidylinositol glycan anchor biosynthesis, class P
hg19_v2_chr14_-_77737543_77737655	0.0202033	GLI3	ENST00000298352.4|NGB|ENSG00000165553.4|neuroglobin
hg19_v2_chr22_-_30867973_30868036	0.0198857	GLI3	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr20_+_49348081_49348096	0.0197663	GLI3	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr2_-_26101314_26101363	0.0196914	GLI3	ENST00000336112.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila) 	ENST00000272341.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr12_-_2944184_2944209	0.0196426	GLI3	ENST00000337508.4|NRIP2|ENSG00000053702.10|nuclear receptor interacting protein 2
hg19_v2_chr15_+_75628394_75628414	0.0196275	GLI3	ENST00000564815.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000338995.6|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr12_+_111051832_111051873	0.0195144	GLI3	ENST00000550703.2|TCTN1|ENSG00000204852.11|tectonic family member 1 	ENST00000551590.1|TCTN1|ENSG00000204852.11|tectonic family member 1
hg19_v2_chr8_+_143761874_143761921	0.0191274	GLI3	ENST00000301258.4|PSCA|ENSG00000167653.4|prostate stem cell antigen 	ENST00000513264.1|PSCA|ENSG00000167653.4|prostate stem cell antigen
hg19_v2_chr12_-_82153087_82153138	0.0190902	GLI3	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr2_+_29204161_29204178	0.0190872	GLI3	ENST00000379558.4|FAM179A|ENSG00000189350.8|family with sequence similarity 179, member A 	ENST00000403861.2|FAM179A|ENSG00000189350.8|family with sequence similarity 179, member A
hg19_v2_chr6_-_109777128_109777203	0.0190176	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr19_-_16653226_16653275	0.0188946	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr9_-_5339873_5339881	0.0184933	GLI3	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr9_-_26947453_26947473	0.018342	GLI3	ENST00000397292.3|PLAA|ENSG00000137055.10|phospholipase A2-activating protein
hg19_v2_chr18_-_44550534_44550534	0.0178517	GLI3	ENST00000451265.1|TCEB3CL|ENSG00000234298.1|transcription elongation factor B polypeptide 3C-like
hg19_v2_chr6_+_163148973_163149044	0.0176693	GLI3	ENST00000366888.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr1_-_104238912_104238912	0.0176646	GLI3	ENST00000330330.5|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr15_-_65809991_65810037	0.0176152	GLI3	ENST00000559526.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000358939.4|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000560665.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000321118.7|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000339244.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000300141.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr5_+_80597419_80597448	0.0175176	GLI3	ENST00000254037.2|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9 	ENST00000407610.3|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9 	ENST00000380199.5|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9
hg19_v2_chr8_-_41655107_41655159	0.0165848	GLI3	ENST00000347528.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000289734.7|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000379758.2|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396945.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396942.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000352337.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr1_-_1051455_1051495	0.0163565	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr9_+_131873659_131873714	0.0161341	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr12_-_54978086_54978100	0.0158597	GLI3	ENST00000553113.1|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chr19_+_45147098_45147223	0.0152529	GLI3	ENST00000425690.3|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000344956.4|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000403059.4|PVR|ENSG00000073008.10|poliovirus receptor
hg19_v2_chr10_+_46997926_46997926	0.0150285	GLI3	ENST00000374314.4|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr16_+_30064411_30064428	0.0147904	GLI3	ENST00000338110.5|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr22_-_50964849_50964903	0.014581	GLI3	ENST00000543927.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein 	ENST00000423348.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein
hg19_v2_chr15_+_45544426_45544451	0.0145634	GLI3	ENST00000347644.3|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2 	ENST00000560438.1|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2
hg19_v2_chrX_-_153775426_153775469	0.0135803	GLI3	ENST00000393562.2|G6PD|ENSG00000160211.11|glucose-6-phosphate dehydrogenase
hg19_v2_chr8_+_1922024_1922069	0.0134473	GLI3	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr16_-_4817129_4817219	0.0129037	GLI3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr11_+_65819802_65819871	0.0123507	GLI3	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chr3_-_179169330_179169384	0.0119819	GLI3	ENST00000232564.3|GNB4|ENSG00000114450.5|guanine nucleotide binding protein (G protein), beta polypeptide 4
hg19_v2_chr19_-_42931567_42931581	0.011762	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr3_+_183894566_183894669	0.0116163	GLI3	ENST00000439647.1|AP2M1|ENSG00000161203.9|adaptor-related protein complex 2, mu 1 subunit
hg19_v2_chr14_-_106586656_106586668	0.0114024	GLI3	ENST00000390602.2|IGHV3-13|ENSG00000211942.2|immunoglobulin heavy variable 3-13
hg19_v2_chr12_+_57853918_57853934	0.0110982	GLI3	ENST00000532291.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000543426.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000228682.2|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000546141.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr20_+_43343886_43344020	0.0100158	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr20_+_3776936_3776964	0.00946225	GLI3	ENST00000439880.2|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr2_+_238768187_238768275	0.00924097	GLI3	ENST00000254661.4|RAMP1|ENSG00000132329.6|receptor (G protein-coupled) activity modifying protein 1 	ENST00000409726.1|RAMP1|ENSG00000132329.6|receptor (G protein-coupled) activity modifying protein 1
hg19_v2_chr6_+_41010293_41010457	0.00900677	GLI3	ENST00000373161.1|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000373158.2|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000470917.1|TSPO2|ENSG00000112212.7|translocator protein 2
hg19_v2_chr1_+_1950763_1950815	0.00822074	GLI3	ENST00000378585.4|GABRD|ENSG00000187730.6|gamma-aminobutyric acid (GABA) A receptor, delta
hg19_v2_chr5_+_23951673_23951673	0.00764138	GLI3	ENST00000507936.1|C5orf17|ENSG00000248874.1|chromosome 5 open reading frame 17
hg19_v2_chr5_-_137090028_137090075	0.0074906	GLI3	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr9_-_122131696_122131745	0.00739207	GLI3	ENST00000373964.2|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1 	ENST00000265922.3|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1
hg19_v2_chr11_-_128457446_128457461	0.00729498	GLI3	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr1_-_104239076_104239076	0.00696196	GLI3	ENST00000370080.3|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr15_+_75628419_75628446	0.00686272	GLI3	ENST00000567377.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000562789.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000568301.1|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr11_+_34073269_34073287	0.00648282	GLI3	ENST00000389645.3|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr17_-_78120936_78120992	0.00643776	GLI3	ENST00000576547.1|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3 	ENST00000269349.3|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3
hg19_v2_chr22_+_22730353_22730360	0.00612715	GLI3	ENST00000390296.2|IGLV5-45|ENSG00000211650.2|immunoglobulin lambda variable 5-45
hg19_v2_chr17_+_73996987_73996987	0.00559365	GLI3	ENST00000588812.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3 	ENST00000448471.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3
hg19_v2_chr18_+_77623668_77623668	0.00531563	GLI3	ENST00000316249.3|KCNG2|ENSG00000178342.4|potassium voltage-gated channel, subfamily G, member 2
hg19_v2_chr17_-_19062424_19062424	0.00454103	GLI3	ENST00000399083.1|AC007952.6|ENSG00000197665.5|Uncharacterized protein
hg19_v2_chr5_-_180668605_180668649	0.00453303	GLI3	ENST00000504128.1|GNB2L1|ENSG00000204628.7|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
hg19_v2_chr3_+_138067314_138067428	0.00416994	GLI3	ENST00000423968.2|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr17_-_1419878_1419912	0.00393275	GLI3	ENST00000449479.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000477910.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000542125.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000575172.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr2_-_26101374_26101389	0.00348601	GLI3	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr16_+_30064444_30064528	0.00273333	GLI3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr12_+_31226779_31226834	0.00260099	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr5_+_161494770_161494787	0.00223325	GLI3	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr20_-_62258394_62258464	0.00212743	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr20_+_18447771_18447771	0.00211063	GLI3	ENST00000377603.4|POLR3F|ENSG00000132664.7|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
hg19_v2_chr12_-_13529642_13529664	0.00196471	GLI3	ENST00000318426.2|C12orf36|ENSG00000180861.5|chromosome 12 open reading frame 36
hg19_v2_chr19_+_7599128_7599150	0.0018014	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr1_+_12977513_12977513	0.00127506	GLI3	ENST00000330881.5|PRAMEF7|ENSG00000204510.1|PRAME family member 7
hg19_v2_chr10_-_97050777_97050806	0.00116524	GLI3	ENST00000329399.6|PDLIM1|ENSG00000107438.4|PDZ and LIM domain 1
hg19_v2_chr16_-_5116025_5116111	0.000405074	GLI3	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chrX_-_52736211_52736239	0.00035895	GLI3	ENST00000336777.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2 	ENST00000337502.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2
hg19_v2_chr17_-_73851285_73851501	0.000255346	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr8_-_38008783_38008783	0.000117799	GLI3	ENST00000276449.4|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
