hg19_v2_chr1_-_151965048_151965062	1.78499	MSX2	ENST00000368809.1|S100A10|ENSG00000197747.4|S100 calcium binding protein A10
hg19_v2_chr1_-_68698222_68698266	1.11872	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr6_-_167040731_167040745	1.0173	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_-_94050668_94050724	0.8915	MSX2	ENST00000539242.1|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr3_-_151034734_151034745	0.776415	MSX2	ENST00000260843.4|GPR87|ENSG00000138271.4|G protein-coupled receptor 87
hg19_v2_chr1_-_68698197_68698214	0.662438	MSX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr12_-_10022735_10022735	0.599093	MSX2	ENST00000228438.2|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chrX_-_48931648_48931730	0.4823	MSX2	ENST00000376386.3|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2 	ENST00000376390.4|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2
hg19_v2_chr12_+_9102632_9102708	0.469249	MSX2	ENST00000539240.1|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr3_-_112127981_112128034	0.468439	MSX2	ENST00000486726.2|RP11-231E6.1|ENSG00000243081.2|RP11-231E6.1
hg19_v2_chr5_+_95997918_95998007	0.465955	MSX2	ENST00000395812.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000395813.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000359176.4|CAST|ENSG00000153113.19|calpastatin 	ENST00000325674.7|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr7_+_134331550_134331593	0.446502	MSX2	ENST00000344924.3|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000418040.1|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000393132.2|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase
hg19_v2_chr6_-_111927449_111927482	0.397594	MSX2	ENST00000368761.5|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000392556.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000340026.6|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr5_+_66254698_66254885	0.377847	MSX2	ENST00000405643.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000407621.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000432426.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr5_+_95998070_95998179	0.36718	MSX2	ENST00000421689.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000510756.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000512620.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr5_+_140797296_140797427	0.351979	MSX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr10_-_99447024_99447080	0.351428	MSX2	ENST00000370626.3|AVPI1|ENSG00000119986.6|arginine vasopressin-induced 1
hg19_v2_chr15_+_41245160_41245347	0.347326	MSX2	ENST00000444189.2|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli) 	ENST00000446533.3|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli)
hg19_v2_chr7_-_2883928_2883993	0.329741	MSX2	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr6_-_111927062_111927125	0.326246	MSX2	ENST00000359831.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr7_+_100210133_100210214	0.308981	MSX2	ENST00000393950.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000424091.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr7_+_100209725_100209824	0.289762	MSX2	ENST00000223054.4|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr7_+_100209979_100210053	0.285669	MSX2	ENST00000493970.1|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000379527.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr1_+_44115814_44115849	0.210486	MSX2	ENST00000372396.3|KDM4A|ENSG00000066135.8|lysine (K)-specific demethylase 4A
hg19_v2_chr12_+_54718904_54718936	0.206328	MSX2	ENST00000262061.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549043.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552218.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000553231.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552362.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000455864.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000416254.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549116.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000551779.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr12_-_9102549_9102591	0.195889	MSX2	ENST00000000412.3|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr1_-_21377383_21377395	0.194859	MSX2	ENST00000374935.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr4_-_69536346_69536371	0.185296	MSX2	ENST00000338206.5|UGT2B15|ENSG00000196620.4|UDP glucuronosyltransferase 2 family, polypeptide B15
hg19_v2_chr1_-_151762943_151763012	0.180642	MSX2	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr9_+_34646651_34646689	0.179362	MSX2	ENST00000378842.3|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase
hg19_v2_chr1_+_151735431_151735446	0.171909	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr9_+_34646624_34646649	0.165891	MSX2	ENST00000450095.2|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase 	ENST00000556278.1|GALT|ENSG00000258728.1|Uncharacterized protein
hg19_v2_chr4_+_71587669_71587752	0.156039	MSX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr7_-_100183742_100183781	0.155886	MSX2	ENST00000310300.6|LRCH4|ENSG00000077454.11|leucine-rich repeats and calponin homology (CH) domain containing 4
hg19_v2_chr10_-_28571015_28571067	0.135818	MSX2	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr8_+_9413410_9413451	0.123631	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr20_+_54967409_54967501	0.115259	MSX2	ENST00000415828.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000217109.4|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000428552.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
hg19_v2_chrX_-_139587225_139587234	0.101951	MSX2	ENST00000370536.2|SOX3|ENSG00000134595.6|SRY (sex determining region Y)-box 3
hg19_v2_chr7_+_100183927_100183957	0.0986222	MSX2	ENST00000241071.6|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000360609.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr11_-_71823266_71823325	0.0980625	MSX2	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr4_-_69434245_69434245	0.09494	MSX2	ENST00000317746.2|UGT2B17|ENSG00000197888.2|UDP glucuronosyltransferase 2 family, polypeptide B17
hg19_v2_chr20_+_56964169_56964182	0.0927648	MSX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr19_+_17378278_17378311	0.0885178	MSX2	ENST00000596335.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601436.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000595632.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr5_-_132200477_132200477	0.0869609	MSX2	ENST00000296875.2|GDF9|ENSG00000164404.4|growth differentiation factor 9
hg19_v2_chr7_-_99716952_99717021	0.0867912	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_+_202317815_202317854	0.0850368	MSX2	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr9_-_95056010_95056038	0.0847285	MSX2	ENST00000443024.2|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase
hg19_v2_chr14_-_23504337_23504369	0.0793396	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr17_-_43045439_43045439	0.078913	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr5_+_150639360_150639450	0.0787222	MSX2	ENST00000523004.1|GM2A|ENSG00000196743.4|GM2 ganglioside activator
hg19_v2_chr3_-_114866084_114866118	0.0725804	MSX2	ENST00000357258.3|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr11_+_17298297_17298341	0.0715656	MSX2	ENST00000529010.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr3_-_11685345_11685432	0.0697497	MSX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr19_+_17378159_17378275	0.0597901	MSX2	ENST00000598188.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000359435.4|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599474.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599057.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601043.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000447614.2|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr11_-_71823796_71823826	0.0595807	MSX2	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr11_-_71823715_71823792	0.0591338	MSX2	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr14_-_23504432_23504448	0.0532862	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr11_-_13517565_13517728	0.0529388	MSX2	ENST00000282091.1|PTH|ENSG00000152266.2|parathyroid hormone 	ENST00000529816.1|PTH|ENSG00000152266.2|parathyroid hormone
hg19_v2_chr12_-_10955226_10955226	0.0514899	MSX2	ENST00000240687.2|TAS2R7|ENSG00000121377.2|taste receptor, type 2, member 7
hg19_v2_chr12_-_57039739_57039798	0.0511154	MSX2	ENST00000552959.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000551020.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000553007.2|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552919.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552104.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000262030.3|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
hg19_v2_chr2_-_98280383_98280570	0.048291	MSX2	ENST00000289228.5|ACTR1B|ENSG00000115073.6|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
hg19_v2_chr11_+_17298255_17298296	0.0314208	MSX2	ENST00000531172.1|NUCB2|ENSG00000070081.11|nucleobindin 2 	ENST00000533738.2|NUCB2|ENSG00000070081.11|nucleobindin 2 	ENST00000323688.6|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chrX_+_113818545_113818566	0.030632	MSX2	ENST00000371951.1|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 	ENST00000276198.1|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 	ENST00000371950.3|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
hg19_v2_chr19_-_10121144_10121155	0.0301035	MSX2	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr4_-_46996424_46996424	0.0299996	MSX2	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr8_+_1993173_1993199	0.0185846	MSX2	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr9_-_5339873_5339881	0.0163694	MSX2	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr1_-_228613026_228613065	0.0142502	MSX2	ENST00000366696.1|HIST3H3|ENSG00000168148.3|histone cluster 3, H3
hg19_v2_chr8_+_1993152_1993168	0.0114074	MSX2	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr16_+_69345243_69345312	0.00944365	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr3_+_129247479_129247493	0.00893614	MSX2	ENST00000296271.3|RHO|ENSG00000163914.4|rhodopsin
hg19_v2_chr18_+_39535152_39535232	0.00120581	MSX2	ENST00000262039.4|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000398870.3|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000586545.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr19_+_42817527_42817546	0.00038297	MSX2	ENST00000598766.1|TMEM145|ENSG00000167619.7|transmembrane protein 145
