hg19_v2_chr13_-_110959478_110959511	11.0417	SOX3_SOX2	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chr1_-_95391315_95391357	10.6767	SOX3_SOX2	ENST00000545882.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000415017.1|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr7_+_102553430_102553456	10.2167	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr5_-_16936340_16936418	9.91182	SOX3_SOX2	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr6_-_128841503_128841870	9.73779	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr2_-_1748214_1748295	9.54198	SOX3_SOX2	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr4_+_146403912_146403972	9.02258	SOX3_SOX2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chrX_-_38080077_38080177	7.73704	SOX3_SOX2	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chr6_+_114178512_114178586	6.31585	SOX3_SOX2	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr9_+_103235365_103235419	5.97802	SOX3_SOX2	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr7_+_134464414_134464429	5.74566	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr2_-_175869936_175869954	5.37043	SOX3_SOX2	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr10_+_123923105_123923160	5.36124	SOX3_SOX2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr8_-_17579726_17579759	5.27822	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr4_-_186877502_186877563	4.97039	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr4_-_186732048_186732225	4.814	SOX3_SOX2	ENST00000448662.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439049.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000420158.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000431808.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319471.9|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr10_+_123923205_123923359	4.8016	SOX3_SOX2	ENST00000369004.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2 	ENST00000260733.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr12_-_6233828_6233843	4.7877	SOX3_SOX2	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr5_-_39425222_39425283	4.69109	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr1_-_225840747_225840860	4.64273	SOX3_SOX2	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr13_+_110959598_110959614	4.61551	SOX3_SOX2	ENST00000360467.5|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chr7_+_134464376_134464413	4.58327	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr5_-_39425290_39425336	4.56846	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr6_-_134639180_134639220	4.18686	SOX3_SOX2	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr5_-_176900610_176900742	4.17924	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr5_-_111091948_111091994	4.13206	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr4_-_40859132_40859209	4.11721	SOX3_SOX2	ENST00000543538.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000502841.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000504305.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000513516.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000510670.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2
hg19_v2_chr2_-_216257849_216257907	3.99936	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr8_+_26435359_26435426	3.8837	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr10_+_123922941_123923023	3.82908	SOX3_SOX2	ENST00000360561.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr3_+_159557637_159557650	3.59408	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr16_+_3068393_3068446	3.54348	SOX3_SOX2	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr7_-_27219849_27219880	3.51232	SOX3_SOX2	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr11_+_114168085_114168222	3.48871	SOX3_SOX2	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr6_-_11232891_11232915	3.47416	SOX3_SOX2	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr5_-_146833485_146833522	3.4649	SOX3_SOX2	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr2_-_161349909_161350043	3.44102	SOX3_SOX2	ENST00000392753.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chrY_+_15016013_15016029	3.38494	SOX3_SOX2	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr5_-_39425068_39425098	3.35941	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr8_-_18871159_18871201	3.25128	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr10_-_30024716_30024739	3.22683	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr2_+_9346892_9346948	3.17183	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr1_+_93913713_93913839	3.17018	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr4_-_7941596_7941653	3.16789	SOX3_SOX2	ENST00000420658.1|AFAP1|ENSG00000196526.6|actin filament associated protein 1 	ENST00000358461.2|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr2_-_151344172_151344243	3.11558	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr10_-_62704005_62704045	3.11528	SOX3_SOX2	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr7_-_107643674_107643700	3.08701	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr9_+_139874683_139874714	3.05648	SOX3_SOX2	ENST00000444903.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chr3_-_149095652_149095652	3.0299	SOX3_SOX2	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr22_-_36357671_36357714	2.99986	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr11_+_86511569_86511599	2.99126	SOX3_SOX2	ENST00000441050.1|PRSS23|ENSG00000150687.7|protease, serine, 23
hg19_v2_chr12_-_106641728_106641805	2.98572	SOX3_SOX2	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr12_-_15942503_15942514	2.97205	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr3_-_123339418_123339473	2.96308	SOX3_SOX2	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chrX_+_51927919_51927991	2.91138	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr7_-_47621736_47621747	2.90377	SOX3_SOX2	ENST00000311160.9|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr2_-_161350305_161350391	2.89757	SOX3_SOX2	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr10_-_33247124_33247207	2.87218	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr2_-_37899323_37899374	2.84914	SOX3_SOX2	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr3_-_123339343_123339401	2.8486	SOX3_SOX2	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr12_-_15942309_15942330	2.84561	SOX3_SOX2	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr15_+_77224045_77224121	2.84509	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr11_+_20044600_20044636	2.80134	SOX3_SOX2	ENST00000311043.8|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr1_+_100111479_100111499	2.78505	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr18_+_3447572_3447607	2.78352	SOX3_SOX2	ENST00000548489.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr3_-_114343768_114343822	2.76523	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr15_+_63335899_63336001	2.73256	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr3_-_120170052_120170100	2.72123	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr11_+_114128522_114128553	2.69982	SOX3_SOX2	ENST00000535401.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr3_-_149688655_149688737	2.69721	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr14_+_85996471_85996497	2.69616	SOX3_SOX2	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr1_-_173174681_173174702	2.67182	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr18_+_3449821_3450034	2.61064	SOX3_SOX2	ENST00000407501.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000405385.3|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000546979.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr13_+_76334795_76334809	2.57333	SOX3_SOX2	ENST00000526202.1|LMO7|ENSG00000136153.15|LIM domain 7 	ENST00000465261.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr4_-_157892498_157892546	2.57231	SOX3_SOX2	ENST00000502773.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr17_-_7297519_7297593	2.54561	SOX3_SOX2	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr2_-_224903995_224904036	2.53124	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr1_+_100111580_100111773	2.48786	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr1_+_25071848_25071944	2.47465	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr15_+_77223960_77223994	2.46982	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr12_-_8815215_8815298	2.44054	SOX3_SOX2	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr13_+_76334567_76334582	2.42699	SOX3_SOX2	ENST00000321797.8|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr15_+_80696666_80696700	2.41367	SOX3_SOX2	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr1_+_169075554_169075571	2.3998	SOX3_SOX2	ENST00000367815.4|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr5_+_15500280_15500312	2.39701	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr11_-_89224508_89224563	2.38977	SOX3_SOX2	ENST00000525196.1|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr11_+_19799327_19799472	2.3853	SOX3_SOX2	ENST00000540292.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr3_+_159570722_159570733	2.35554	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr11_-_89224638_89224653	2.30738	SOX3_SOX2	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr5_+_135364584_135364691	2.29105	SOX3_SOX2	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr17_-_7297833_7297889	2.27618	SOX3_SOX2	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr5_+_34656331_34656351	2.25439	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr2_+_102314161_102314206	2.23183	SOX3_SOX2	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr11_+_19798964_19799013	2.23066	SOX3_SOX2	ENST00000527559.2|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr11_-_2162468_2162497	2.22899	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr5_+_34656569_34656588	2.22662	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr3_-_149688502_149688526	2.22413	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr1_-_173176452_173176477	2.2222	SOX3_SOX2	ENST00000281834.3|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr3_-_149688896_149688970	2.222	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chrX_-_51812268_51812368	2.22102	SOX3_SOX2	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr14_+_105941118_105941196	2.20847	SOX3_SOX2	ENST00000550577.1|CRIP2|ENSG00000182809.6|cysteine-rich protein 2 	ENST00000538259.2|CRIP2|ENSG00000182809.6|cysteine-rich protein 2
hg19_v2_chr7_+_134551583_134551599	2.18884	SOX3_SOX2	ENST00000435928.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr10_-_70092671_70092806	2.17524	SOX3_SOX2	ENST00000358769.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000432941.1|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000495025.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr8_+_79428539_79428606	2.16886	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chrX_+_135229600_135229624	2.1601	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr4_+_78078304_78078406	2.15859	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr12_-_8803128_8803164	2.1491	SOX3_SOX2	ENST00000543467.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr2_+_192109911_192110170	2.148	SOX3_SOX2	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr8_+_79578282_79578334	2.11385	SOX3_SOX2	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chrX_-_13956497_13956536	2.10589	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr13_-_24007815_24007872	2.08417	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr1_-_95392635_95392834	2.06941	SOX3_SOX2	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr13_-_33760216_33760234	2.06351	SOX3_SOX2	ENST00000255486.4|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr4_+_41614909_41614926	2.05391	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr17_-_78009647_78009681	2.05215	SOX3_SOX2	ENST00000310924.2|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chrX_+_15518923_15518952	2.02632	SOX3_SOX2	ENST00000348343.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr10_+_123872483_123872573	2.02501	SOX3_SOX2	ENST00000369001.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr2_+_192110199_192110254	2.02492	SOX3_SOX2	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr5_+_102201509_102201528	2.01778	SOX3_SOX2	ENST00000348126.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000379787.4|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr9_-_130639997_130640022	2.01463	SOX3_SOX2	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr12_-_8815299_8815331	2.00755	SOX3_SOX2	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr22_+_39052632_39052692	2.00218	SOX3_SOX2	ENST00000411557.1|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000396811.2|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000216029.3|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila) 	ENST00000416285.1|CBY1|ENSG00000100211.6|chibby homolog 1 (Drosophila)
hg19_v2_chr10_+_114710211_114710229	2.00125	SOX3_SOX2	ENST00000349937.2|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369397.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr4_-_2264015_2264041	1.9402	SOX3_SOX2	ENST00000337190.2|MXD4|ENSG00000123933.10|MAX dimerization protein 4
hg19_v2_chr14_+_85996507_85996572	1.93365	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chrX_+_102631844_102632109	1.91612	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr20_-_43977055_43977073	1.90106	SOX3_SOX2	ENST00000372733.3|SDC4|ENSG00000124145.5|syndecan 4 	ENST00000537976.1|SDC4|ENSG00000124145.5|syndecan 4
hg19_v2_chr2_+_33172221_33172369	1.89155	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr2_+_69240302_69240332	1.87567	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr10_-_91174215_91174314	1.86991	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chr8_-_119964434_119964445	1.85038	SOX3_SOX2	ENST00000297350.4|TNFRSF11B|ENSG00000164761.4|tumor necrosis factor receptor superfamily, member 11b
hg19_v2_chr11_-_89224299_89224466	1.83875	SOX3_SOX2	ENST00000343727.5|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000531342.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000375979.3|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr5_-_111092930_111092955	1.81817	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr11_-_6341724_6341762	1.81544	SOX3_SOX2	ENST00000530979.1|PRKCDBP|ENSG00000170955.9|protein kinase C, delta binding protein
hg19_v2_chr17_-_10325261_10325267	1.79814	SOX3_SOX2	ENST00000403437.2|MYH8|ENSG00000133020.4|myosin, heavy chain 8, skeletal muscle, perinatal
hg19_v2_chr7_+_116312411_116312502	1.78617	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr5_-_54281407_54281429	1.78369	SOX3_SOX2	ENST00000381403.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr11_+_32112431_32112454	1.7824	SOX3_SOX2	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr8_-_48651648_48651648	1.78062	SOX3_SOX2	ENST00000408965.3|CEBPD|ENSG00000221869.4|CCAAT/enhancer binding protein (C/EBP), delta
hg19_v2_chr13_-_107187462_107187462	1.76885	SOX3_SOX2	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chrX_+_51928002_51928017	1.76873	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr9_+_116263639_116263707	1.76728	SOX3_SOX2	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr15_-_35088340_35088340	1.76109	SOX3_SOX2	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chr5_+_140749803_140749831	1.749	SOX3_SOX2	ENST00000576222.1|PCDHGB3|ENSG00000262209.1|protocadherin gamma subfamily B, 3
hg19_v2_chr9_+_116263778_116263793	1.74659	SOX3_SOX2	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr5_-_150521192_150521229	1.74185	SOX3_SOX2	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chr12_+_49212514_49212692	1.73071	SOX3_SOX2	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr9_+_36036430_36036430	1.72034	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chrX_+_135229559_135229576	1.7098	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr5_+_140593509_140593509	1.70979	SOX3_SOX2	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chr6_-_167040731_167040745	1.70754	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr8_-_27469196_27469294	1.70742	SOX3_SOX2	ENST00000546343.1|CLU|ENSG00000120885.15|clusterin 	ENST00000560566.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr2_+_69240511_69240532	1.69467	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr1_-_79472365_79472443	1.68523	SOX3_SOX2	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chrX_+_114827818_114827842	1.65344	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr8_-_27468842_27468878	1.63067	SOX3_SOX2	ENST00000523500.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr8_-_27468945_27468948	1.62864	SOX3_SOX2	ENST00000405140.3|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr10_+_17272608_17272692	1.62743	SOX3_SOX2	ENST00000421459.2|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr14_+_50234827_50234886	1.62702	SOX3_SOX2	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr1_-_68698222_68698266	1.62392	SOX3_SOX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr8_-_18541603_18541650	1.61631	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr11_-_89224488_89224507	1.61111	SOX3_SOX2	ENST00000534731.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000527626.1|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr3_-_57583052_57583079	1.60453	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr15_+_85923797_85923844	1.59963	SOX3_SOX2	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr1_-_33815486_33815517	1.59451	SOX3_SOX2	ENST00000373418.3|PHC2|ENSG00000134686.12|polyhomeotic homolog 2 (Drosophila)
hg19_v2_chr3_-_139258521_139258671	1.58366	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr10_+_180405_180429	1.57858	SOX3_SOX2	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr6_-_47277634_47277651	1.576	SOX3_SOX2	ENST00000296861.2|TNFRSF21|ENSG00000146072.6|tumor necrosis factor receptor superfamily, member 21
hg19_v2_chr2_-_55276320_55276334	1.56023	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr5_+_109025067_109025146	1.55114	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr5_+_140797296_140797427	1.54013	SOX3_SOX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr2_-_106015491_106015518	1.53842	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr17_-_76921459_76921478	1.51078	SOX3_SOX2	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr2_-_165424973_165425010	1.50505	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr5_-_54281491_54281517	1.50339	SOX3_SOX2	ENST00000381405.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chrX_-_10645773_10645795	1.50062	SOX3_SOX2	ENST00000453318.2|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr4_-_99578789_99578843	1.49715	SOX3_SOX2	ENST00000511651.1|TSPAN5|ENSG00000168785.3|tetraspanin 5 	ENST00000505184.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr9_+_124088860_124088895	1.49664	SOX3_SOX2	ENST00000373806.1|GSN|ENSG00000148180.12|gelsolin
hg19_v2_chr16_+_6069586_6069602	1.49612	SOX3_SOX2	ENST00000547372.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr16_+_57673430_57673438	1.49311	SOX3_SOX2	ENST00000540164.2|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568531.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr4_-_22517620_22517712	1.49249	SOX3_SOX2	ENST00000502482.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125 	ENST00000334304.5|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr16_+_89989687_89989774	1.48734	SOX3_SOX2	ENST00000315491.7|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000555576.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000554336.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000553967.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr8_-_38326119_38326134	1.483	SOX3_SOX2	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr17_-_62502022_62502074	1.4815	SOX3_SOX2	ENST00000578804.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr14_+_96505659_96505664	1.47713	SOX3_SOX2	ENST00000555004.1|C14orf132|ENSG00000227051.4|chromosome 14 open reading frame 132
hg19_v2_chr15_+_25200074_25200105	1.4648	SOX3_SOX2	ENST00000390687.4|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000584968.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000346403.6|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000554227.2|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N
hg19_v2_chr5_+_76011868_76012005	1.46373	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr20_+_11898507_11898565	1.45723	SOX3_SOX2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr4_+_47487285_47487366	1.44669	SOX3_SOX2	ENST00000273859.3|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D 	ENST00000504445.1|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D
hg19_v2_chrX_+_135251783_135251813	1.44456	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr3_-_57583130_57583152	1.44405	SOX3_SOX2	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr2_+_71295733_71295752	1.43769	SOX3_SOX2	ENST00000443938.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000244204.6|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr1_+_93913665_93913705	1.43371	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr12_+_53491220_53491229	1.43352	SOX3_SOX2	ENST00000548547.1|IGFBP6|ENSG00000167779.3|insulin-like growth factor binding protein 6 	ENST00000301464.3|IGFBP6|ENSG00000167779.3|insulin-like growth factor binding protein 6
hg19_v2_chr1_-_17307173_17307330	1.4319	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr17_+_1674982_1675041	1.428	SOX3_SOX2	ENST00000572048.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000573763.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chrX_-_134049262_134049297	1.4252	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr12_-_49582978_49583107	1.42504	SOX3_SOX2	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr6_-_31697977_31698052	1.41874	SOX3_SOX2	ENST00000375787.2|DDAH2|ENSG00000213722.4|dimethylarginine dimethylaminohydrolase 2
hg19_v2_chr1_-_110283660_110283660	1.41409	SOX3_SOX2	ENST00000361066.2|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr2_-_26205340_26205381	1.40757	SOX3_SOX2	ENST00000264712.3|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr19_-_18717627_18717660	1.40125	SOX3_SOX2	ENST00000392386.3|CRLF1|ENSG00000006016.6|cytokine receptor-like factor 1
hg19_v2_chr11_-_111794446_111794471	1.38535	SOX3_SOX2	ENST00000527950.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr5_-_111093167_111093252	1.38484	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr15_+_74218787_74218813	1.38395	SOX3_SOX2	ENST00000261921.7|LOXL1|ENSG00000129038.11|lysyl oxidase-like 1
hg19_v2_chr4_+_41258786_41258962	1.38383	SOX3_SOX2	ENST00000503431.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000284440.4|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000508768.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000512788.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
hg19_v2_chr8_+_94929969_94929980	1.38096	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr15_+_25200108_25200161	1.3631	SOX3_SOX2	ENST00000577949.1|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000338094.6|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000579070.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000577565.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000338327.4|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein
hg19_v2_chr12_-_10251603_10251619	1.35871	SOX3_SOX2	ENST00000457018.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr8_-_6420930_6420957	1.3577	SOX3_SOX2	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr20_+_43211149_43211266	1.35732	SOX3_SOX2	ENST00000372886.1|PKIG|ENSG00000168734.9|protein kinase (cAMP-dependent, catalytic) inhibitor gamma
hg19_v2_chr8_-_6420777_6420784	1.35023	SOX3_SOX2	ENST00000415216.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr5_+_102201430_102201478	1.34884	SOX3_SOX2	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chrX_+_100333709_100333876	1.34827	SOX3_SOX2	ENST00000372930.4|TMEM35|ENSG00000126950.7|transmembrane protein 35
hg19_v2_chr8_-_18744528_18744585	1.33295	SOX3_SOX2	ENST00000523619.1|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr10_-_33246722_33246830	1.33194	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr12_+_104680659_104680777	1.3269	SOX3_SOX2	ENST00000526691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000388854.3|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000354940.6|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526390.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531689.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chrX_-_128657457_128657477	1.32178	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr13_+_98795434_98795480	1.31997	SOX3_SOX2	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr16_+_6069072_6069132	1.31722	SOX3_SOX2	ENST00000547605.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000550418.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000553186.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr9_-_14313641_14313666	1.31706	SOX3_SOX2	ENST00000380953.1|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr4_-_186733363_186733392	1.3146	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr4_-_99578776_99578786	1.31203	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr13_+_98795505_98795522	1.30986	SOX3_SOX2	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr1_+_156052354_156052380	1.30829	SOX3_SOX2	ENST00000368301.2|LMNA|ENSG00000160789.15|lamin A/C
hg19_v2_chr11_-_2162162_2162246	1.30379	SOX3_SOX2	ENST00000381389.1|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr11_-_75236867_75236968	1.30269	SOX3_SOX2	ENST00000376282.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5 	ENST00000336898.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5
hg19_v2_chr12_-_8815404_8815438	1.29694	SOX3_SOX2	ENST00000359478.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000396549.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr20_-_56284816_56284958	1.28227	SOX3_SOX2	ENST00000395819.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000341744.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr10_-_735553_735683	1.27986	SOX3_SOX2	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr7_-_111846435_111846471	1.25259	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr1_-_116311402_116311413	1.24366	SOX3_SOX2	ENST00000261448.5|CASQ2|ENSG00000118729.10|calsequestrin 2 (cardiac muscle)
hg19_v2_chr13_+_32605437_32605473	1.24246	SOX3_SOX2	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr5_-_111092873_111092898	1.24217	SOX3_SOX2	ENST00000509025.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000515855.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr8_-_38326139_38326161	1.23932	SOX3_SOX2	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr7_-_151511911_151511962	1.23761	SOX3_SOX2	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr21_-_27423339_27423352	1.22134	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr2_+_33172012_33172039	1.22021	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr14_+_77228532_77228672	1.20915	SOX3_SOX2	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr5_+_82767583_82767744	1.19656	SOX3_SOX2	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr9_-_14313893_14313984	1.18858	SOX3_SOX2	ENST00000380921.3|NFIB|ENSG00000147862.10|nuclear factor I/B 	ENST00000380959.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr7_+_16793160_16793160	1.17738	SOX3_SOX2	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr4_+_124317940_124317987	1.17353	SOX3_SOX2	ENST00000505319.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila) 	ENST00000339241.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chrX_-_106960285_106960365	1.16975	SOX3_SOX2	ENST00000503515.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372397.2|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr4_-_52904425_52904471	1.16607	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr11_-_66445219_66445392	1.16184	SOX3_SOX2	ENST00000525754.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531969.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000524637.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531036.2|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000310046.4|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B
hg19_v2_chr5_-_111093081_111093111	1.15211	SOX3_SOX2	ENST00000453526.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000509427.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr11_+_46402583_46402669	1.14874	SOX3_SOX2	ENST00000359803.3|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr12_+_56477093_56477110	1.14173	SOX3_SOX2	ENST00000549672.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000415288.2|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr9_-_130616915_130616944	1.13464	SOX3_SOX2	ENST00000344849.3|ENG|ENSG00000106991.9|endoglin
hg19_v2_chr11_+_60691924_60691966	1.12901	SOX3_SOX2	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr19_-_19051927_19051934	1.12271	SOX3_SOX2	ENST00000600077.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr9_-_123476719_123476810	1.11967	SOX3_SOX2	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr18_+_56530794_56530845	1.11941	SOX3_SOX2	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr2_+_46926326_46926452	1.10641	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr16_-_28550348_28550495	1.10577	SOX3_SOX2	ENST00000324873.6|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr2_+_102953608_102953727	1.10153	SOX3_SOX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr6_+_89790459_89790479	1.09803	SOX3_SOX2	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr12_-_125401885_125401914	1.08745	SOX3_SOX2	ENST00000542416.1|UBC|ENSG00000150991.10|ubiquitin C
hg19_v2_chr4_-_141677267_141677291	1.08185	SOX3_SOX2	ENST00000442267.2|TBC1D9|ENSG00000109436.7|TBC1 domain family, member 9 (with GRAM domain)
hg19_v2_chr11_-_6677018_6677085	1.0818	SOX3_SOX2	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr5_+_125758865_125758876	1.08013	SOX3_SOX2	ENST00000542322.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000544396.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr5_+_125758813_125758845	1.07332	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr5_+_121647764_121647876	1.06366	SOX3_SOX2	ENST00000261368.8|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379533.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379536.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379538.3|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr18_+_3451646_3451722	1.0622	SOX3_SOX2	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chrX_+_80457442_80457501	1.06168	SOX3_SOX2	ENST00000373212.5|SH3BGRL|ENSG00000131171.8|SH3 domain binding glutamic acid-rich protein like
hg19_v2_chr2_-_188312971_188312987	1.06074	SOX3_SOX2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr13_-_45150392_45150472	1.05996	SOX3_SOX2	ENST00000501704.2|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr5_+_140753444_140753651	1.05951	SOX3_SOX2	ENST00000517434.1|PCDHGA6|ENSG00000253731.1|protocadherin gamma subfamily A, 6
hg19_v2_chr1_+_203096831_203096864	1.04965	SOX3_SOX2	ENST00000337894.4|ADORA1|ENSG00000163485.11|adenosine A1 receptor
hg19_v2_chr17_+_8213590_8213603	1.04374	SOX3_SOX2	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr10_+_73724123_73724206	1.03865	SOX3_SOX2	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr5_+_121647924_121647940	1.03553	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr5_+_140729649_140729828	1.03532	SOX3_SOX2	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr20_-_43150601_43150751	1.03506	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chrX_+_135252050_135252085	1.03502	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr17_-_77924627_77924661	1.03498	SOX3_SOX2	ENST00000572862.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000573782.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000574427.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000570373.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000340848.7|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000576768.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr3_-_11623804_11623865	1.03396	SOX3_SOX2	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr4_-_143226979_143226990	1.03003	SOX3_SOX2	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr3_-_125820348_125820400	1.02598	SOX3_SOX2	ENST00000509064.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000508835.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr1_+_169079823_169079836	1.02117	SOX3_SOX2	ENST00000367813.3|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr10_+_114709999_114710031	1.01792	SOX3_SOX2	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr9_-_98079965_98080008	1.01088	SOX3_SOX2	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr7_-_134143841_134143924	1.00811	SOX3_SOX2	ENST00000285930.4|AKR1B1|ENSG00000085662.9|aldo-keto reductase family 1, member B1 (aldose reductase)
hg19_v2_chr19_-_44124019_44124030	1.00752	SOX3_SOX2	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr20_-_56285595_56285656	1.00049	SOX3_SOX2	ENST00000395816.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000347215.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr5_-_111093759_111093915	0.99436	SOX3_SOX2	ENST00000509979.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000513100.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000508161.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000455559.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr18_+_7946941_7946952	0.98643	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr11_-_111781610_111781617	0.982433	SOX3_SOX2	ENST00000525823.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr22_-_39151947_39151994	0.975705	SOX3_SOX2	ENST00000216064.4|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr16_+_15528332_15528385	0.975238	SOX3_SOX2	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr17_-_18950310_18950310	0.972192	SOX3_SOX2	ENST00000573099.1|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chrX_-_119603138_119603220	0.971118	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr19_+_7580944_7581031	0.965396	SOX3_SOX2	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr11_-_111781554_111781584	0.964421	SOX3_SOX2	ENST00000526167.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000528961.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr1_+_66797687_66797884	0.959069	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr16_+_58497567_58497586	0.958643	SOX3_SOX2	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr1_+_43766642_43766667	0.957306	SOX3_SOX2	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr5_-_95158644_95158709	0.954264	SOX3_SOX2	ENST00000237858.6|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr12_-_56120865_56120912	0.953631	SOX3_SOX2	ENST00000548898.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000552067.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr5_-_16742330_16742344	0.949846	SOX3_SOX2	ENST00000505695.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000427430.2|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr10_-_75410771_75410813	0.937649	SOX3_SOX2	ENST00000372873.4|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr2_+_71295717_71295732	0.935167	SOX3_SOX2	ENST00000418807.3|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000443872.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr9_-_130617029_130617040	0.928194	SOX3_SOX2	ENST00000373203.4|ENG|ENSG00000106991.9|endoglin
hg19_v2_chr9_+_112810878_112810985	0.927306	SOX3_SOX2	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr20_+_6748311_6748352	0.925405	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr2_+_236578248_236578264	0.924825	SOX3_SOX2	ENST00000409538.1|AGAP1|ENSG00000157985.13|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
hg19_v2_chr18_+_3451584_3451606	0.924479	SOX3_SOX2	ENST00000551541.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chrX_+_86772707_86772752	0.921736	SOX3_SOX2	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr5_+_121647877_121647913	0.921543	SOX3_SOX2	ENST00000514497.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000261367.7|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr17_-_7590745_7590856	0.920416	SOX3_SOX2	ENST00000514944.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000503591.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000455263.2|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000420246.2|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000445888.2|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000509690.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000604348.1|TP53|ENSG00000141510.11|tumor protein p53 	ENST00000269305.4|TP53|ENSG00000141510.11|tumor protein p53
hg19_v2_chr12_-_71003568_71003629	0.919802	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr5_+_140743859_140743898	0.916254	SOX3_SOX2	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr11_+_46402744_46402777	0.914779	SOX3_SOX2	ENST00000533952.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_-_26233423_26233482	0.913202	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr6_+_89790490_89790506	0.907732	SOX3_SOX2	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr3_-_52002403_52002433	0.905741	SOX3_SOX2	ENST00000490063.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000468324.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000497653.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000484633.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr4_-_85887503_85887544	0.904635	SOX3_SOX2	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr6_-_2962331_2962391	0.89831	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr20_+_42086525_42086568	0.895638	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr4_+_55524085_55524110	0.894128	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr18_+_21719018_21719061	0.892737	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr3_-_87040233_87040257	0.886777	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr5_-_146833222_146833261	0.874662	SOX3_SOX2	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr22_+_38864041_38864150	0.867134	SOX3_SOX2	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr10_-_97321165_97321176	0.866467	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr2_+_219283815_219283853	0.866147	SOX3_SOX2	ENST00000248444.5|VIL1|ENSG00000127831.6|villin 1 	ENST00000454069.1|VIL1|ENSG00000127831.6|villin 1 	ENST00000392114.2|VIL1|ENSG00000127831.6|villin 1
hg19_v2_chr20_+_62152077_62152136	0.865734	SOX3_SOX2	ENST00000370179.3|PPDPF|ENSG00000125534.5|pancreatic progenitor cell differentiation and proliferation factor 	ENST00000370177.1|PPDPF|ENSG00000125534.5|pancreatic progenitor cell differentiation and proliferation factor
hg19_v2_chr2_+_69240415_69240438	0.860414	SOX3_SOX2	ENST00000409829.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr4_-_139163491_139163510	0.857994	SOX3_SOX2	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr5_+_140480083_140480234	0.853836	SOX3_SOX2	ENST00000231130.2|PCDHB3|ENSG00000113205.2|protocadherin beta 3
hg19_v2_chr18_-_5419797_5419829	0.853405	SOX3_SOX2	ENST00000542146.1|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3 	ENST00000427684.2|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3
hg19_v2_chrX_+_135251835_135251887	0.847059	SOX3_SOX2	ENST00000456445.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr14_+_22458631_22458735	0.846713	SOX3_SOX2	ENST00000390444.1|TRAV16|ENSG00000211796.1|T cell receptor alpha variable 16
hg19_v2_chr2_+_66662510_66662532	0.843367	SOX3_SOX2	ENST00000272369.9|MEIS1|ENSG00000143995.15|Meis homeobox 1 	ENST00000407092.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr12_+_54378923_54378970	0.83946	SOX3_SOX2	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr9_-_95298314_95298340	0.838512	SOX3_SOX2	ENST00000344604.5|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific 	ENST00000375540.1|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr1_+_164528866_164528877	0.834295	SOX3_SOX2	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr11_-_111781454_111781513	0.831921	SOX3_SOX2	ENST00000533280.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr22_-_22292934_22292967	0.831432	SOX3_SOX2	ENST00000538191.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000424647.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000407142.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F
hg19_v2_chr22_-_50746027_50746082	0.829272	SOX3_SOX2	ENST00000425954.1|PLXNB2|ENSG00000196576.10|plexin B2 	ENST00000449103.1|PLXNB2|ENSG00000196576.10|plexin B2
hg19_v2_chr9_-_35115836_35115893	0.825786	SOX3_SOX2	ENST00000378566.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000378554.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000322813.5|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr2_+_203241531_203241659	0.825716	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr1_+_64239657_64239724	0.824125	SOX3_SOX2	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr10_-_32217717_32217781	0.822816	SOX3_SOX2	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr11_+_12695944_12695989	0.82145	SOX3_SOX2	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr16_+_28875126_28875195	0.820776	SOX3_SOX2	ENST00000359285.5|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1 	ENST00000538342.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr1_-_9811600_9811639	0.816953	SOX3_SOX2	ENST00000435891.1|CLSTN1|ENSG00000171603.12|calsyntenin 1
hg19_v2_chr12_-_56120838_56120848	0.816558	SOX3_SOX2	ENST00000548160.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr2_+_210517895_210518021	0.814849	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr15_-_49338624_49338700	0.813887	SOX3_SOX2	ENST00000261847.3|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000380927.2|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000559424.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr8_+_9911778_9911880	0.811842	SOX3_SOX2	ENST00000317173.4|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A 	ENST00000441698.2|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A
hg19_v2_chr16_-_22385901_22385947	0.806638	SOX3_SOX2	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr8_-_6420565_6420659	0.806468	SOX3_SOX2	ENST00000338312.6|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr5_+_119867159_119867240	0.805619	SOX3_SOX2	ENST00000505123.1|PRR16|ENSG00000184838.10|proline rich 16
hg19_v2_chr14_-_88459503_88459615	0.804873	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr22_-_39151995_39152045	0.803133	SOX3_SOX2	ENST00000405018.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000438058.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr9_-_136933134_136933154	0.800893	SOX3_SOX2	ENST00000303407.7|BRD3|ENSG00000169925.12|bromodomain containing 3
hg19_v2_chr17_+_8339189_8339285	0.798924	SOX3_SOX2	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr2_-_208031943_208031991	0.796712	SOX3_SOX2	ENST00000421199.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous) 	ENST00000457962.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr20_-_34542548_34542575	0.788383	SOX3_SOX2	ENST00000305978.2|SCAND1|ENSG00000171222.6|SCAN domain containing 1
hg19_v2_chr17_-_56605341_56605363	0.783413	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr19_+_16187816_16187838	0.780183	SOX3_SOX2	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr2_-_188430478_188430496	0.777007	SOX3_SOX2	ENST00000421427.1|TFPI|ENSG00000003436.10|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
hg19_v2_chr14_+_105781102_105781230	0.772733	SOX3_SOX2	ENST00000547217.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr1_-_115300592_115300648	0.772424	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr2_+_10183651_10183713	0.770561	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chr7_+_44836276_44836283	0.767559	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr16_+_68279207_68279252	0.767153	SOX3_SOX2	ENST00000413021.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000565744.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000219345.5|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chr6_-_2972075_2972090	0.765447	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr16_+_57653989_57654022	0.76412	SOX3_SOX2	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr13_-_36920872_36920934	0.762382	SOX3_SOX2	ENST00000451493.1|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr20_-_25566153_25566211	0.757108	SOX3_SOX2	ENST00000278886.6|NINL|ENSG00000101004.10|ninein-like 	ENST00000422516.1|NINL|ENSG00000101004.10|ninein-like
hg19_v2_chr6_-_46889694_46889719	0.754446	SOX3_SOX2	ENST00000283296.7|GPR116|ENSG00000069122.14|G protein-coupled receptor 116 	ENST00000362015.4|GPR116|ENSG00000069122.14|G protein-coupled receptor 116 	ENST00000456426.2|GPR116|ENSG00000069122.14|G protein-coupled receptor 116
hg19_v2_chr11_+_46402297_46402306	0.750647	SOX3_SOX2	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr22_-_39151463_39151639	0.750415	SOX3_SOX2	ENST00000405510.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000433561.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr16_+_57653854_57653968	0.750211	SOX3_SOX2	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr12_+_53443680_53443858	0.75017	SOX3_SOX2	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr8_-_38325219_38325418	0.749229	SOX3_SOX2	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chrX_+_86772787_86772817	0.741137	SOX3_SOX2	ENST00000373114.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr4_+_154074217_154074270	0.740203	SOX3_SOX2	ENST00000437508.2|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr1_+_17866290_17866330	0.740054	SOX3_SOX2	ENST00000361221.3|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENST00000452522.1|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENST00000434513.1|ARHGEF10L|ENSG00000074964.12|Rho guanine nucleotide exchange factor (GEF) 10-like
hg19_v2_chr13_-_36920615_36920659	0.739754	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr14_+_23305760_23305781	0.739225	SOX3_SOX2	ENST00000311852.6|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr4_-_5890145_5890234	0.734564	SOX3_SOX2	ENST00000397890.2|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr18_+_21718924_21718963	0.732796	SOX3_SOX2	ENST00000399496.3|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr7_-_22233442_22233527	0.730923	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr2_+_66662690_66662711	0.73023	SOX3_SOX2	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr1_-_21671968_21672009	0.728499	SOX3_SOX2	ENST00000415912.2|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr8_-_20161466_20161481	0.728346	SOX3_SOX2	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr4_-_159080806_159080833	0.724988	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr5_-_140700322_140700358	0.724345	SOX3_SOX2	ENST00000313368.5|TAF7|ENSG00000178913.5|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
hg19_v2_chr22_-_38713428_38713446	0.724295	SOX3_SOX2	ENST00000403904.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000405675.3|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr12_-_56123444_56123491	0.721224	SOX3_SOX2	ENST00000546457.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000549117.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr17_-_10452929_10452946	0.720776	SOX3_SOX2	ENST00000532183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000397183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000420805.1|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult
hg19_v2_chr3_-_129407535_129407575	0.720357	SOX3_SOX2	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr3_-_58563094_58563126	0.719303	SOX3_SOX2	ENST00000464064.1|FAM107A|ENSG00000168309.12|family with sequence similarity 107, member A
hg19_v2_chr14_+_100259666_100259685	0.717741	SOX3_SOX2	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr5_-_137514288_137514331	0.717062	SOX3_SOX2	ENST00000454473.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000418329.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000455658.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000230901.5|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000402931.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr6_-_112115074_112115094	0.712839	SOX3_SOX2	ENST00000368667.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr1_-_154155595_154155673	0.711006	SOX3_SOX2	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr14_+_105781048_105781101	0.708416	SOX3_SOX2	ENST00000458164.2|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2 	ENST00000447393.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr2_-_86564776_86564813	0.708217	SOX3_SOX2	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr17_-_7145475_7145774	0.707668	SOX3_SOX2	ENST00000571129.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000571253.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000573928.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr17_+_25621102_25621157	0.705614	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr17_+_72983674_72983768	0.705262	SOX3_SOX2	ENST00000337231.5|CDR2L|ENSG00000109089.7|cerebellar degeneration-related protein 2-like
hg19_v2_chr17_+_57642886_57643006	0.70285	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr4_+_154125565_154125626	0.697202	SOX3_SOX2	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chrX_+_71401570_71401644	0.696423	SOX3_SOX2	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr3_-_52001448_52001478	0.694383	SOX3_SOX2	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr1_+_200708671_200708744	0.693834	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr5_+_140772381_140772381	0.693168	SOX3_SOX2	ENST00000398604.2|PCDHGA8|ENSG00000253767.1|protocadherin gamma subfamily A, 8
hg19_v2_chr1_+_66458072_66458109	0.692117	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr12_-_10251539_10251560	0.692024	SOX3_SOX2	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr3_-_114790179_114790222	0.691611	SOX3_SOX2	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr21_+_38445539_38445596	0.690476	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr14_+_67707826_67707994	0.688689	SOX3_SOX2	ENST00000261681.4|MPP5|ENSG00000072415.4|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
hg19_v2_chrX_+_107069063_107069123	0.688414	SOX3_SOX2	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr3_-_47950745_47950757	0.687301	SOX3_SOX2	ENST00000429422.1|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr6_-_52628271_52628367	0.686743	SOX3_SOX2	ENST00000493422.1|GSTA2|ENSG00000244067.1|glutathione S-transferase alpha 2
hg19_v2_chr3_+_138067666_138067745	0.680674	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chrX_-_13835147_13835224	0.680513	SOX3_SOX2	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr11_-_9286921_9286937	0.677837	SOX3_SOX2	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr17_-_53046058_53046146	0.67652	SOX3_SOX2	ENST00000571584.1|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast) 	ENST00000299335.3|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast)
hg19_v2_chr22_-_38713394_38713416	0.672127	SOX3_SOX2	ENST00000396832.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000413574.2|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr17_+_8339164_8339186	0.671882	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr1_-_68698197_68698214	0.670758	SOX3_SOX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr6_+_34857019_34857117	0.669633	SOX3_SOX2	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr6_-_109777128_109777203	0.668237	SOX3_SOX2	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr15_-_59665062_59665099	0.665346	SOX3_SOX2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr19_+_1269324_1269350	0.663399	SOX3_SOX2	ENST00000589710.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000588230.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000413636.2|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000586472.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000589686.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000444172.2|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000587323.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000320936.5|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000587896.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000589235.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000591659.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein
hg19_v2_chr3_-_11685345_11685432	0.661952	SOX3_SOX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr3_+_113616317_113616364	0.659453	SOX3_SOX2	ENST00000440446.2|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C 	ENST00000488680.1|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C
hg19_v2_chr3_+_100211412_100211504	0.658553	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr12_-_46766577_46766650	0.656567	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr5_+_138089100_138089146	0.655098	SOX3_SOX2	ENST00000520339.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000355078.5|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000302763.7|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000518910.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr4_+_41540160_41540196	0.655065	SOX3_SOX2	ENST00000503057.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000511496.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr3_-_52486841_52486882	0.654912	SOX3_SOX2	ENST00000496590.1|TNNC1|ENSG00000114854.3|troponin C type 1 (slow)
hg19_v2_chr16_-_28550320_28550345	0.653807	SOX3_SOX2	ENST00000395641.2|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr3_+_43328004_43328095	0.652402	SOX3_SOX2	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr19_-_1568057_1568142	0.649307	SOX3_SOX2	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr20_-_30310656_30310685	0.648951	SOX3_SOX2	ENST00000376055.4|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr19_-_44123734_44123796	0.647157	SOX3_SOX2	ENST00000598676.1|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr1_-_26232522_26232644	0.644112	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr5_-_179780312_179780387	0.639614	SOX3_SOX2	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr9_-_136344197_136344232	0.637902	SOX3_SOX2	ENST00000414172.1|SLC2A6|ENSG00000160326.9|solute carrier family 2 (facilitated glucose transporter), member 6 	ENST00000371897.4|SLC2A6|ENSG00000160326.9|solute carrier family 2 (facilitated glucose transporter), member 6
hg19_v2_chr5_+_170288856_170288920	0.633377	SOX3_SOX2	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr1_-_230513367_230513391	0.632231	SOX3_SOX2	ENST00000321327.2|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5 	ENST00000525115.1|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5
hg19_v2_chr3_-_167813672_167813763	0.630576	SOX3_SOX2	ENST00000470487.1|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr7_+_77166592_77166653	0.627053	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr11_+_93861993_93862102	0.623459	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr14_+_96968707_96968788	0.621022	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chrX_-_24665353_24665382	0.616948	SOX3_SOX2	ENST00000379144.2|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr11_+_120255997_120256048	0.614316	SOX3_SOX2	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr3_+_50192499_50192534	0.608778	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr13_+_49684445_49684517	0.607028	SOX3_SOX2	ENST00000398316.3|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr7_-_30066233_30066332	0.60361	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr11_-_44971702_44971759	0.601314	SOX3_SOX2	ENST00000533940.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11 	ENST00000533937.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11
hg19_v2_chr2_-_70475701_70475717	0.60116	SOX3_SOX2	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr6_-_139695757_139695795	0.601043	SOX3_SOX2	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr11_+_73882311_73882413	0.60053	SOX3_SOX2	ENST00000398427.4|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1 	ENST00000544401.1|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1
hg19_v2_chr1_-_154155675_154155709	0.598621	SOX3_SOX2	ENST00000330188.9|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341485.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr5_-_74062930_74062980	0.596776	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr12_+_53443963_53443970	0.595942	SOX3_SOX2	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr9_-_86595105_86595184	0.594646	SOX3_SOX2	ENST00000457156.1|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000360384.5|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376263.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr11_+_46402482_46402502	0.592422	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr4_+_71587669_71587752	0.591524	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr10_-_104262460_104262489	0.590786	SOX3_SOX2	ENST00000446605.2|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000369905.4|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000545684.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chrX_+_84499081_84499115	0.589179	SOX3_SOX2	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr18_+_3448455_3448497	0.584089	SOX3_SOX2	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr9_+_71789133_71789220	0.583626	SOX3_SOX2	ENST00000348208.4|TJP2|ENSG00000119139.12|tight junction protein 2 	ENST00000265384.7|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr18_+_11751466_11751475	0.582197	SOX3_SOX2	ENST00000535121.1|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr11_+_118478313_118478358	0.579752	SOX3_SOX2	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr3_-_148939835_148939842	0.579338	SOX3_SOX2	ENST00000264613.6|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr1_-_153538292_153538342	0.578352	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr17_+_72427477_72427667	0.577645	SOX3_SOX2	ENST00000342648.5|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C 	ENST00000481232.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr1_-_173020056_173020103	0.577186	SOX3_SOX2	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr9_-_34620440_34620515	0.577168	SOX3_SOX2	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr16_+_6533729_6533796	0.575677	SOX3_SOX2	ENST00000551752.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr1_-_214638146_214638146	0.573111	SOX3_SOX2	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr7_+_94537542_94537591	0.570854	SOX3_SOX2	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr8_-_29940464_29940486	0.568883	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr6_-_165989936_165989936	0.568425	SOX3_SOX2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr22_-_37880543_37880667	0.566374	SOX3_SOX2	ENST00000442496.1|MFNG|ENSG00000100060.13|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chrX_-_24665208_24665275	0.566121	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr2_-_70475730_70475798	0.559473	SOX3_SOX2	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chrX_+_46306624_46306709	0.557205	SOX3_SOX2	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chrX_-_13956737_13956808	0.556594	SOX3_SOX2	ENST00000454189.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr9_-_123476612_123476698	0.551006	SOX3_SOX2	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr14_+_23340822_23341004	0.549659	SOX3_SOX2	ENST00000359591.4|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr8_-_6420759_6420775	0.547828	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr2_+_65283529_65283599	0.547683	SOX3_SOX2	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr3_+_50192537_50192563	0.54587	SOX3_SOX2	ENST00000002829.3|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr10_+_82214052_82214111	0.542822	SOX3_SOX2	ENST00000372157.2|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000372164.3|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000372158.1|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000341863.6|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr15_+_78730622_78730646	0.539354	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr7_-_148725733_148725759	0.539258	SOX3_SOX2	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr5_-_137514333_137514367	0.539056	SOX3_SOX2	ENST00000411594.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000430331.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr2_+_65283506_65283527	0.536666	SOX3_SOX2	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr19_-_23578220_23578362	0.535814	SOX3_SOX2	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr9_+_71819927_71820053	0.533937	SOX3_SOX2	ENST00000535702.1|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr3_+_44626446_44626477	0.533865	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr1_-_65432171_65432252	0.533864	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr17_-_33760269_33760302	0.532579	SOX3_SOX2	ENST00000452764.3|SLFN12|ENSG00000172123.8|schlafen family member 12
hg19_v2_chr12_+_32260085_32260268	0.53248	SOX3_SOX2	ENST00000548411.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000281474.5|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000551086.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila)
hg19_v2_chr15_-_49338748_49338765	0.530236	SOX3_SOX2	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr18_+_55888767_55888809	0.529917	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr9_-_23825956_23826063	0.529391	SOX3_SOX2	ENST00000397312.2|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr11_-_14358620_14358712	0.529169	SOX3_SOX2	ENST00000531421.1|RRAS2|ENSG00000133818.8|related RAS viral (r-ras) oncogene homolog 2
hg19_v2_chr14_-_25519317_25519503	0.526326	SOX3_SOX2	ENST00000323944.5|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr5_-_159739532_159739607	0.522897	SOX3_SOX2	ENST00000520748.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000393977.3|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000257536.7|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr17_-_20946338_20946369	0.522165	SOX3_SOX2	ENST00000261497.4|USP22|ENSG00000124422.7|ubiquitin specific peptidase 22
hg19_v2_chr19_+_48972459_48972490	0.521403	SOX3_SOX2	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr2_+_17721920_17721933	0.52123	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr12_+_70760056_70760085	0.520274	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr10_-_104262426_104262437	0.519915	SOX3_SOX2	ENST00000487599.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chr16_-_48419361_48419408	0.519147	SOX3_SOX2	ENST00000394725.2|SIAH1|ENSG00000196470.7|siah E3 ubiquitin protein ligase 1
hg19_v2_chr11_+_65408273_65408341	0.515312	SOX3_SOX2	ENST00000394227.3|SIPA1|ENSG00000213445.4|signal-induced proliferation-associated 1
hg19_v2_chrX_+_84499038_84499078	0.512388	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr3_-_126373929_126373998	0.51208	SOX3_SOX2	ENST00000523403.1|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3 	ENST00000524230.2|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3
hg19_v2_chr4_-_143227088_143227105	0.511687	SOX3_SOX2	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr17_-_56065484_56065513	0.509137	SOX3_SOX2	ENST00000581208.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chr9_-_74979420_74979580	0.509039	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr7_-_24797032_24797162	0.508737	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr1_+_68150744_68150890	0.507399	SOX3_SOX2	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr5_+_140474181_140474227	0.506329	SOX3_SOX2	ENST00000194155.4|PCDHB2|ENSG00000112852.4|protocadherin beta 2
hg19_v2_chr15_-_64995399_64995480	0.506281	SOX3_SOX2	ENST00000559753.1|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000560258.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000559912.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000326005.6|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2
hg19_v2_chr1_+_145727681_145727725	0.50587	SOX3_SOX2	ENST00000417171.1|PDZK1|ENSG00000174827.9|PDZ domain containing 1 	ENST00000451928.2|PDZK1|ENSG00000174827.9|PDZ domain containing 1
hg19_v2_chr2_-_238499303_238499331	0.505012	SOX3_SOX2	ENST00000409576.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr11_+_65339820_65340051	0.503257	SOX3_SOX2	ENST00000316409.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000449319.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000530349.1|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B
hg19_v2_chr17_-_37353950_37353961	0.502852	SOX3_SOX2	ENST00000394310.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000394303.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000344140.5|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit
hg19_v2_chr17_-_7518145_7518234	0.50098	SOX3_SOX2	ENST00000250113.7|FXR2|ENSG00000129245.7|fragile X mental retardation, autosomal homolog 2 	ENST00000571597.1|FXR2|ENSG00000129245.7|fragile X mental retardation, autosomal homolog 2
hg19_v2_chr17_-_43138463_43138505	0.49974	SOX3_SOX2	ENST00000310604.4|DCAKD|ENSG00000172992.7|dephospho-CoA kinase domain containing
hg19_v2_chr5_-_95158375_95158485	0.497762	SOX3_SOX2	ENST00000512469.2|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000379979.4|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000505427.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000508780.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr17_-_33446735_33446785	0.497122	SOX3_SOX2	ENST00000460118.2|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000335858.7|RAD51D|ENSG00000185379.16|RAD51 paralog D
hg19_v2_chr1_-_17445930_17445954	0.495366	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr18_-_13726510_13726662	0.493898	SOX3_SOX2	ENST00000322247.3|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000592976.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000402563.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000591269.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A
hg19_v2_chr7_+_12727250_12727265	0.491828	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr13_-_36920420_36920574	0.49113	SOX3_SOX2	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr7_+_7222233_7222327	0.490413	SOX3_SOX2	ENST00000436587.2|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr14_-_65409438_65409479	0.489425	SOX3_SOX2	ENST00000557049.1|GPX2|ENSG00000176153.10|glutathione peroxidase 2 (gastrointestinal)
hg19_v2_chr11_-_2906979_2907111	0.48909	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr17_+_2240775_2240812	0.487237	SOX3_SOX2	ENST00000268989.3|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2 	ENST00000426855.2|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr6_-_41715128_41715142	0.486724	SOX3_SOX2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr13_-_111567353_111567432	0.485436	SOX3_SOX2	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chr1_+_172389821_172389833	0.483822	SOX3_SOX2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr9_+_125703282_125703337	0.483052	SOX3_SOX2	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr6_-_132834184_132834337	0.482351	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr9_-_115818951_115819011	0.481207	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chrX_+_105937068_105937091	0.479216	SOX3_SOX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr6_-_52710893_52710893	0.471526	SOX3_SOX2	ENST00000284562.2|GSTA5|ENSG00000182793.6|glutathione S-transferase alpha 5
hg19_v2_chr21_-_43735446_43735525	0.469651	SOX3_SOX2	ENST00000398431.2|TFF3|ENSG00000160180.14|trefoil factor 3 (intestinal)
hg19_v2_chr1_-_23857698_23857733	0.46901	SOX3_SOX2	ENST00000361729.2|E2F2|ENSG00000007968.6|E2F transcription factor 2
hg19_v2_chr15_+_96869165_96869183	0.468785	SOX3_SOX2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr19_+_21106081_21106207	0.466418	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr3_-_125775629_125775681	0.465281	SOX3_SOX2	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chrX_+_38420783_38420805	0.465178	SOX3_SOX2	ENST00000422612.2|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000286824.6|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000545599.1|TSPAN7|ENSG00000156298.8|tetraspanin 7
hg19_v2_chr13_-_103451307_103451380	0.459651	SOX3_SOX2	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr7_-_32110451_32110523	0.457596	SOX3_SOX2	ENST00000396191.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa 	ENST00000396182.2|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr14_+_95078714_95078739	0.456873	SOX3_SOX2	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr5_-_1112141_1112164	0.455794	SOX3_SOX2	ENST00000264930.5|SLC12A7|ENSG00000113504.15|solute carrier family 12 (potassium/chloride transporter), member 7
hg19_v2_chr17_+_57297807_57297923	0.454129	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr12_-_6772303_6772314	0.454082	SOX3_SOX2	ENST00000396807.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000446105.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000341550.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr3_+_183353356_183353450	0.453798	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr5_+_72112470_72112533	0.453047	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr4_+_78079570_78079586	0.451946	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr13_-_36944307_36944322	0.451721	SOX3_SOX2	ENST00000355182.4|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr11_-_70672645_70672711	0.449058	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chrX_+_55744228_55744318	0.445589	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr5_+_55033845_55033870	0.44474	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr17_+_35851570_35851667	0.444339	SOX3_SOX2	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr3_+_35721106_35721127	0.443643	SOX3_SOX2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr14_-_24610779_24610834	0.441642	SOX3_SOX2	ENST00000560403.1|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9 	ENST00000419198.2|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9 	ENST00000216799.4|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9
hg19_v2_chr7_-_41742697_41742714	0.441206	SOX3_SOX2	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr19_+_34287751_34287807	0.439304	SOX3_SOX2	ENST00000590771.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000589786.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000284006.6|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000588881.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15
hg19_v2_chr8_+_31497271_31497285	0.43404	SOX3_SOX2	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr14_-_25519095_25519280	0.433113	SOX3_SOX2	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr11_+_17316870_17316897	0.431027	SOX3_SOX2	ENST00000458064.2|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr6_-_46459099_46459132	0.429626	SOX3_SOX2	ENST00000371374.1|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr1_+_87012753_87012767	0.429193	SOX3_SOX2	ENST00000370563.3|CLCA4|ENSG00000016602.8|chloride channel accessory 4
hg19_v2_chr5_-_157002775_157002790	0.427296	SOX3_SOX2	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr9_-_117880477_117880536	0.42443	SOX3_SOX2	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr14_+_96968802_96968895	0.422005	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr20_-_30310693_30310719	0.421184	SOX3_SOX2	ENST00000307677.4|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420653.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr15_+_71184931_71184974	0.420036	SOX3_SOX2	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr3_-_88108212_88108223	0.418859	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr11_+_44117741_44117798	0.416801	SOX3_SOX2	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr6_+_28092338_28092412	0.416641	SOX3_SOX2	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr14_-_77923897_77923983	0.415892	SOX3_SOX2	ENST00000343765.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000327028.4|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000556412.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557466.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000448935.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000553888.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557658.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
hg19_v2_chr6_+_31865552_31865575	0.415119	SOX3_SOX2	ENST00000469372.1|C2|ENSG00000166278.10|complement component 2 	ENST00000497706.1|C2|ENSG00000166278.10|complement component 2
hg19_v2_chr7_+_134212312_134212344	0.415105	SOX3_SOX2	ENST00000359579.4|AKR1B10|ENSG00000198074.5|aldo-keto reductase family 1, member B10 (aldose reductase)
hg19_v2_chr8_-_93115445_93115462	0.414677	SOX3_SOX2	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr9_+_136325089_136325144	0.413822	SOX3_SOX2	ENST00000291722.7|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000316948.4|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000540581.1|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1
hg19_v2_chr20_+_36149602_36149665	0.413775	SOX3_SOX2	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr4_+_156680153_156680242	0.412961	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr17_+_42148225_42148317	0.40862	SOX3_SOX2	ENST00000591696.1|G6PC3|ENSG00000141349.4|glucose 6 phosphatase, catalytic, 3
hg19_v2_chr1_-_235813290_235813323	0.404204	SOX3_SOX2	ENST00000391854.2|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr10_-_35104185_35104267	0.402587	SOX3_SOX2	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr12_-_16759711_16759734	0.402363	SOX3_SOX2	ENST00000447609.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr7_+_12726474_12726542	0.400441	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chrX_+_55744166_55744222	0.397376	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr11_-_64013663_64013672	0.396249	SOX3_SOX2	ENST00000392210.2|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr11_-_62369291_62369351	0.395284	SOX3_SOX2	ENST00000278823.2|MTA2|ENSG00000149480.2|metastasis associated 1 family, member 2
hg19_v2_chr14_-_35099315_35099369	0.395053	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr19_+_41256764_41256825	0.393261	SOX3_SOX2	ENST00000243563.3|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000601253.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000597353.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000599362.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr12_+_109577202_109577289	0.392668	SOX3_SOX2	ENST00000377848.3|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta 	ENST00000377854.5|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta
hg19_v2_chr6_+_167704838_167704952	0.391495	SOX3_SOX2	ENST00000366829.2|UNC93A|ENSG00000112494.5|unc-93 homolog A (C. elegans)
hg19_v2_chr4_+_78079450_78079563	0.390966	SOX3_SOX2	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr18_-_53089723_53089786	0.389527	SOX3_SOX2	ENST00000561992.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562512.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr9_-_36401155_36401219	0.386007	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr15_+_85144217_85144281	0.386004	SOX3_SOX2	ENST00000540936.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000448803.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546275.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546148.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000442073.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000334141.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000358472.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000502939.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000379358.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000327179.6|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2
hg19_v2_chr12_+_19358228_19358259	0.384802	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr8_+_22462532_22462597	0.381743	SOX3_SOX2	ENST00000389279.3|CCAR2|ENSG00000158941.12|cell cycle and apoptosis regulator 2
hg19_v2_chrX_-_15872914_15873054	0.381717	SOX3_SOX2	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr10_-_97321112_97321163	0.380506	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr18_-_53253112_53253199	0.379448	SOX3_SOX2	ENST00000568673.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562847.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000568147.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr1_-_235814048_235814067	0.379287	SOX3_SOX2	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr4_-_90756769_90756846	0.375463	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr11_+_68080077_68080127	0.375436	SOX3_SOX2	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr13_-_107220455_107220517	0.373997	SOX3_SOX2	ENST00000400198.3|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr12_+_112204691_112204781	0.372547	SOX3_SOX2	ENST00000416293.3|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial) 	ENST00000261733.2|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial)
hg19_v2_chr9_-_132586378_132586433	0.370544	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr2_+_54683419_54683442	0.369171	SOX3_SOX2	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr9_-_23826298_23826344	0.368272	SOX3_SOX2	ENST00000380117.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr19_+_11466062_11466159	0.367353	SOX3_SOX2	ENST00000251473.5|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000591329.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000586380.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr22_+_21128167_21128167	0.366694	SOX3_SOX2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr10_-_70092635_70092666	0.364218	SOX3_SOX2	ENST00000309049.4|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr20_+_35090150_35090240	0.364058	SOX3_SOX2	ENST00000340491.4|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chr6_+_64282447_64282586	0.363962	SOX3_SOX2	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr2_-_79313973_79314059	0.363489	SOX3_SOX2	ENST00000454188.1|REG1B|ENSG00000172023.3|regenerating islet-derived 1 beta
hg19_v2_chr17_+_57232690_57232860	0.360456	SOX3_SOX2	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr10_+_45455207_45455279	0.359646	SOX3_SOX2	ENST00000334940.6|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000374417.2|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000340258.5|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000427758.1|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4
hg19_v2_chr16_+_28722684_28722807	0.358436	SOX3_SOX2	ENST00000331666.6|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000395587.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000569690.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000564243.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C
hg19_v2_chr1_-_169555779_169555826	0.357827	SOX3_SOX2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr1_+_150039369_150039444	0.356044	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr14_-_94789663_94789731	0.354872	SOX3_SOX2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chr12_-_117628253_117628308	0.354604	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chrX_-_77041685_77041716	0.352462	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr1_-_115300579_115300590	0.35239	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr11_-_47207390_47207432	0.352133	SOX3_SOX2	ENST00000539589.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3 	ENST00000528462.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3
hg19_v2_chr7_+_73245193_73245337	0.351606	SOX3_SOX2	ENST00000340958.2|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr22_-_20004330_20004364	0.349441	SOX3_SOX2	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr3_-_165555200_165555260	0.348952	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr10_+_72972281_72972336	0.348867	SOX3_SOX2	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr7_+_77167376_77167395	0.346847	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr8_+_67624653_67624752	0.346467	SOX3_SOX2	ENST00000521198.2|SGK3|ENSG00000104205.8|serum/glucocorticoid regulated kinase family, member 3
hg19_v2_chr22_-_22090064_22090127	0.342603	SOX3_SOX2	ENST00000339468.3|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr12_+_133613937_133613994	0.341899	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr11_+_125034586_125034604	0.341597	SOX3_SOX2	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr3_+_15643245_15643318	0.341396	SOX3_SOX2	ENST00000303498.5|BTD|ENSG00000169814.8|biotinidase 	ENST00000437172.1|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr3_-_18466026_18466065	0.338276	SOX3_SOX2	ENST00000417717.2|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr9_+_132934835_132934857	0.337669	SOX3_SOX2	ENST00000372398.3|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr3_+_52828805_52828821	0.337606	SOX3_SOX2	ENST00000416872.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3 	ENST00000449956.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3
hg19_v2_chr17_+_27369918_27370010	0.337254	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr11_-_117103208_117103288	0.335475	SOX3_SOX2	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr6_-_28303901_28303975	0.334661	SOX3_SOX2	ENST00000439158.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000446474.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000414431.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000344279.6|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000453745.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr12_-_10875831_10876025	0.334495	SOX3_SOX2	ENST00000279550.7|YBX3|ENSG00000060138.8|Y box binding protein 3 	ENST00000228251.4|YBX3|ENSG00000060138.8|Y box binding protein 3
hg19_v2_chr4_+_41614720_41614734	0.334237	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr7_+_99613212_99613236	0.333524	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr2_+_181845074_181845118	0.332815	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr2_+_8822113_8822196	0.332255	SOX3_SOX2	ENST00000396290.1|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 	ENST00000331129.3|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
hg19_v2_chr17_+_16284399_16284416	0.33199	SOX3_SOX2	ENST00000535788.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr4_-_169239921_169239972	0.330944	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr3_+_107241783_107241850	0.329581	SOX3_SOX2	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr12_-_8815477_8815490	0.3291	SOX3_SOX2	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr6_+_138725343_138725501	0.327694	SOX3_SOX2	ENST00000607197.1|HEBP2|ENSG00000051620.6|heme binding protein 2 	ENST00000367697.3|HEBP2|ENSG00000051620.6|heme binding protein 2
hg19_v2_chr3_+_173116225_173116242	0.327029	SOX3_SOX2	ENST00000457714.1|NLGN1|ENSG00000169760.13|neuroligin 1
hg19_v2_chr17_-_27278304_27278408	0.326919	SOX3_SOX2	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr5_+_140767452_140767452	0.326093	SOX3_SOX2	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr4_-_15656923_15657035	0.323972	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr14_-_73925225_73925323	0.323797	SOX3_SOX2	ENST00000356296.4|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000355058.3|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000359560.3|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000557597.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000554394.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555238.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000535282.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555987.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555394.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000554546.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila)
hg19_v2_chr5_+_156607829_156607946	0.323409	SOX3_SOX2	ENST00000422843.3|ITK|ENSG00000113263.8|IL2-inducible T-cell kinase
hg19_v2_chr15_-_34659349_34659479	0.321987	SOX3_SOX2	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr14_-_61124977_61125037	0.321936	SOX3_SOX2	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr17_+_73452695_73452744	0.321629	SOX3_SOX2	ENST00000582186.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000582455.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000581252.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000579208.1|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chr11_-_62414070_62414104	0.321394	SOX3_SOX2	ENST00000540933.1|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000346178.4|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000356638.3|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000534779.1|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB 	ENST00000525994.1|GANAB|ENSG00000089597.12|glucosidase, alpha; neutral AB
hg19_v2_chr22_+_30792846_30792978	0.320442	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr1_-_21503337_21503407	0.319483	SOX3_SOX2	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr17_-_7145106_7145172	0.319256	SOX3_SOX2	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr17_-_46623441_46623441	0.318845	SOX3_SOX2	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr20_-_49547910_49547988	0.318827	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr10_-_65028817_65028828	0.318214	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr2_+_17721230_17721255	0.315095	SOX3_SOX2	ENST00000457525.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr7_+_99613195_99613206	0.314018	SOX3_SOX2	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr12_+_133657461_133657529	0.308111	SOX3_SOX2	ENST00000412146.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000544426.1|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440984.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000319849.3|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440550.2|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr3_+_49977440_49977482	0.307212	SOX3_SOX2	ENST00000442092.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000266022.4|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000443081.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr17_+_73452545_73452685	0.304911	SOX3_SOX2	ENST00000314256.7|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chr3_+_156008809_156008839	0.303728	SOX3_SOX2	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr19_+_36266417_36266427	0.302783	SOX3_SOX2	ENST00000378944.5|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33 	ENST00000007510.4|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33
hg19_v2_chr2_-_197791441_197791525	0.302628	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr7_+_77167343_77167369	0.30201	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr7_-_100425112_100425121	0.301559	SOX3_SOX2	ENST00000358173.3|EPHB4|ENSG00000196411.5|EPH receptor B4
hg19_v2_chr19_-_58400148_58400364	0.30076	SOX3_SOX2	ENST00000595048.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000600634.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000595295.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000596604.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597342.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597807.1|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr8_-_60031762_60031803	0.299414	SOX3_SOX2	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr12_-_122296755_122296770	0.298822	SOX3_SOX2	ENST00000289004.4|HPD|ENSG00000158104.7|4-hydroxyphenylpyruvate dioxygenase
hg19_v2_chr19_+_36266433_36266490	0.295831	SOX3_SOX2	ENST00000314737.5|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33
hg19_v2_chr1_-_243418344_243418356	0.295543	SOX3_SOX2	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr10_+_47894572_47894572	0.294797	SOX3_SOX2	ENST00000355876.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr4_+_75023816_75023890	0.294607	SOX3_SOX2	ENST00000395759.2|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000331145.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000359107.5|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000325278.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
hg19_v2_chr19_+_17420340_17420383	0.29446	SOX3_SOX2	ENST00000359866.4|DDA1|ENSG00000130311.6|DET1 and DDB1 associated 1
hg19_v2_chr7_+_73868120_73868216	0.294091	SOX3_SOX2	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr2_+_181845298_181845378	0.29402	SOX3_SOX2	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr5_+_14143728_14143829	0.292951	SOX3_SOX2	ENST00000344204.4|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor 	ENST00000537187.1|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor
hg19_v2_chr10_+_104535994_104536014	0.291889	SOX3_SOX2	ENST00000369889.4|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr3_-_105588231_105588396	0.291076	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr17_-_61777090_61777221	0.29024	SOX3_SOX2	ENST00000578061.1|LIMD2|ENSG00000136490.4|LIM domain containing 2
hg19_v2_chr5_+_147774275_147774340	0.287884	SOX3_SOX2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr7_-_42951509_42951904	0.287517	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chrX_+_153626708_153626730	0.287373	SOX3_SOX2	ENST00000436473.1|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000344746.4|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000458500.1|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr2_+_10442993_10443051	0.286531	SOX3_SOX2	ENST00000423674.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1 	ENST00000307845.3|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr10_-_54531406_54531460	0.286525	SOX3_SOX2	ENST00000373968.3|MBL2|ENSG00000165471.6|mannose-binding lectin (protein C) 2, soluble
hg19_v2_chr7_+_35840542_35840671	0.285832	SOX3_SOX2	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr7_-_137028534_137028611	0.28547	SOX3_SOX2	ENST00000348225.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr17_+_16284104_16284245	0.285392	SOX3_SOX2	ENST00000577958.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000302182.3|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000577640.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr18_+_32558208_32558340	0.284794	SOX3_SOX2	ENST00000436190.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr22_-_31742218_31742350	0.284625	SOX3_SOX2	ENST00000266269.5|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1 	ENST00000405309.3|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1 	ENST00000351933.4|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1
hg19_v2_chrX_-_45060135_45060149	0.283868	SOX3_SOX2	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr16_-_73082274_73082274	0.283569	SOX3_SOX2	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr5_+_137514687_137514774	0.283545	SOX3_SOX2	ENST00000394894.3|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr3_-_88108192_88108203	0.283199	SOX3_SOX2	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr5_-_141338627_141338627	0.280748	SOX3_SOX2	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr10_+_114710425_114710470	0.280609	SOX3_SOX2	ENST00000352065.5|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369395.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr5_+_72112418_72112456	0.280472	SOX3_SOX2	ENST00000454282.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr11_-_62359027_62359109	0.279422	SOX3_SOX2	ENST00000494385.1|TUT1|ENSG00000149016.11|terminal uridylyl transferase 1, U6 snRNA-specific 	ENST00000308436.7|TUT1|ENSG00000149016.11|terminal uridylyl transferase 1, U6 snRNA-specific
hg19_v2_chr15_+_85923856_85923987	0.279412	SOX3_SOX2	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr17_+_4046462_4046550	0.278788	SOX3_SOX2	ENST00000577075.2|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000575251.1|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000301391.3|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2
hg19_v2_chr9_+_90112741_90112761	0.27734	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr22_-_32651326_32651340	0.275641	SOX3_SOX2	ENST00000266086.4|SLC5A4|ENSG00000100191.4|solute carrier family 5 (glucose activated ion channel), member 4
hg19_v2_chr1_-_3566627_3566676	0.275373	SOX3_SOX2	ENST00000419924.2|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000270708.7|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr10_+_97803151_97803348	0.275353	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr1_+_12834984_12834984	0.275126	SOX3_SOX2	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr19_-_8408139_8408153	0.273852	SOX3_SOX2	ENST00000330915.3|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000593649.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000595639.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3
hg19_v2_chr3_-_27525865_27525887	0.272157	SOX3_SOX2	ENST00000445684.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr3_+_44596679_44596726	0.271415	SOX3_SOX2	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr11_-_18548426_18548500	0.270663	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr5_+_74062806_74062840	0.270443	SOX3_SOX2	ENST00000296802.5|NSA2|ENSG00000164346.5|NSA2 ribosome biogenesis homolog (S. cerevisiae)
hg19_v2_chr14_+_35761580_35761679	0.268878	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr6_+_126240442_126240459	0.268169	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr6_-_52668605_52668708	0.26745	SOX3_SOX2	ENST00000334575.5|GSTA1|ENSG00000243955.1|glutathione S-transferase alpha 1
hg19_v2_chr6_-_112194484_112194662	0.267339	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr3_+_51428704_51428737	0.265973	SOX3_SOX2	ENST00000323686.4|RBM15B|ENSG00000179837.6|RNA binding motif protein 15B
hg19_v2_chr10_+_47894023_47894023	0.265645	SOX3_SOX2	ENST00000358474.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr17_+_19186292_19186414	0.265325	SOX3_SOX2	ENST00000395626.1|EPN2|ENSG00000072134.11|epsin 2 	ENST00000571254.1|EPN2|ENSG00000072134.11|epsin 2
hg19_v2_chr2_+_181845843_181845859	0.264628	SOX3_SOX2	ENST00000602710.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chrX_+_153686614_153686629	0.263176	SOX3_SOX2	ENST00000369682.3|PLXNA3|ENSG00000130827.5|plexin A3
hg19_v2_chrX_-_17878827_17878846	0.262666	SOX3_SOX2	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr12_+_133614119_133614166	0.262439	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr19_+_11466167_11466180	0.261235	SOX3_SOX2	ENST00000591608.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr2_+_30454390_30454409	0.260449	SOX3_SOX2	ENST00000395323.3|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000406087.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000404397.1|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr14_-_45603657_45603732	0.260379	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chr16_-_4987065_4987156	0.260185	SOX3_SOX2	ENST00000590782.2|PPL|ENSG00000118898.11|periplakin 	ENST00000345988.2|PPL|ENSG00000118898.11|periplakin
hg19_v2_chr8_-_33424636_33424653	0.259074	SOX3_SOX2	ENST00000256257.1|RNF122|ENSG00000133874.1|ring finger protein 122
hg19_v2_chr9_-_35111570_35111600	0.258717	SOX3_SOX2	ENST00000378561.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000603301.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr2_+_183580954_183581049	0.257307	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr5_-_137090028_137090075	0.257204	SOX3_SOX2	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr19_-_42498369_42498390	0.256515	SOX3_SOX2	ENST00000302102.5|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENST00000545399.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr4_+_2819883_2819948	0.251836	SOX3_SOX2	ENST00000511747.1|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2 	ENST00000503393.2|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2
hg19_v2_chr2_+_90108504_90108504	0.251011	SOX3_SOX2	ENST00000390271.2|IGKV6D-41|ENSG00000211626.2|immunoglobulin kappa variable 6D-41 (non-functional)
hg19_v2_chr2_-_128568721_128568766	0.250212	SOX3_SOX2	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr18_-_53253323_53253359	0.249706	SOX3_SOX2	ENST00000540999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000563888.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr20_-_49547731_49547753	0.24952	SOX3_SOX2	ENST00000396029.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr19_+_12949251_12949370	0.248957	SOX3_SOX2	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr15_-_86338134_86338261	0.247353	SOX3_SOX2	ENST00000337975.5|KLHL25|ENSG00000183655.11|kelch-like family member 25
hg19_v2_chr1_-_112046289_112046382	0.246301	SOX3_SOX2	ENST00000241356.4|ADORA3|ENSG00000121933.13|adenosine A3 receptor
hg19_v2_chr2_-_178128250_178128300	0.246165	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr15_-_73076030_73076126	0.24583	SOX3_SOX2	ENST00000311669.8|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chrX_+_153626571_153626627	0.244503	SOX3_SOX2	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr4_+_699610_699732	0.24445	SOX3_SOX2	ENST00000521023.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr17_+_72428218_72428264	0.243595	SOX3_SOX2	ENST00000392628.2|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr12_+_133613878_133613924	0.242815	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr5_+_137514834_137514910	0.242664	SOX3_SOX2	ENST00000508792.1|KIF20A|ENSG00000112984.7|kinesin family member 20A 	ENST00000504621.1|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr4_+_699537_699600	0.24031	SOX3_SOX2	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr2_-_89459813_89459850	0.239526	SOX3_SOX2	ENST00000390256.2|IGKV6-21|ENSG00000211611.2|immunoglobulin kappa variable 6-21 (non-functional)
hg19_v2_chr1_-_168106536_168106821	0.239033	SOX3_SOX2	ENST00000537209.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000361697.2|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000546300.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000367835.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161
hg19_v2_chr17_+_48503519_48503597	0.239023	SOX3_SOX2	ENST00000300441.4|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000541920.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000506582.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000504392.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000427954.2|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2
hg19_v2_chr2_+_207024306_207024392	0.237557	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr2_+_27719697_27719723	0.235227	SOX3_SOX2	ENST00000264717.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator 	ENST00000424318.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator
hg19_v2_chr14_-_80697396_80697402	0.233996	SOX3_SOX2	ENST00000557010.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr3_-_8686479_8686486	0.233443	SOX3_SOX2	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr7_-_137028498_137028520	0.231816	SOX3_SOX2	ENST00000393083.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr4_-_90757364_90757396	0.231046	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr11_+_66624527_66624592	0.229251	SOX3_SOX2	ENST00000393952.3|LRFN4|ENSG00000173621.8|leucine rich repeat and fibronectin type III domain containing 4
hg19_v2_chr12_-_56615693_56615758	0.228055	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr3_+_15643476_15643557	0.227964	SOX3_SOX2	ENST00000436193.1|BTD|ENSG00000169814.8|biotinidase 	ENST00000383778.4|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr2_+_54342533_54342547	0.227531	SOX3_SOX2	ENST00000406041.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr14_+_77924373_77924451	0.226933	SOX3_SOX2	ENST00000216479.3|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 	ENST00000535854.2|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 	ENST00000555517.1|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
hg19_v2_chr3_+_130612803_130612877	0.226469	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr22_+_30792980_30793047	0.224464	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr18_+_46065393_46065444	0.224444	SOX3_SOX2	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr10_-_13390270_13390316	0.223655	SOX3_SOX2	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr18_+_11851383_11851399	0.223307	SOX3_SOX2	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr12_+_104337515_104337574	0.222124	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr15_-_86338100_86338132	0.222102	SOX3_SOX2	ENST00000536947.1|KLHL25|ENSG00000183655.11|kelch-like family member 25
hg19_v2_chr5_+_162930114_162930125	0.221212	SOX3_SOX2	ENST00000280969.5|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta
hg19_v2_chr19_-_47249679_47249737	0.221166	SOX3_SOX2	ENST00000263280.6|STRN4|ENSG00000090372.10|striatin, calmodulin binding protein 4
hg19_v2_chr14_-_104028595_104028677	0.220284	SOX3_SOX2	ENST00000337322.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000445922.2|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr16_-_19533404_19533467	0.21962	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chrX_-_85302531_85302570	0.218518	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr11_+_35198243_35198260	0.218149	SOX3_SOX2	ENST00000528455.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr2_-_178128528_178128574	0.218065	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr15_+_32322685_32322701	0.217614	SOX3_SOX2	ENST00000454250.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal) 	ENST00000306901.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr1_-_57431679_57431810	0.217339	SOX3_SOX2	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr3_+_46616017_46616045	0.21733	SOX3_SOX2	ENST00000542931.1|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr17_+_38171614_38171635	0.216439	SOX3_SOX2	ENST00000583218.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394149.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr8_+_133787586_133787673	0.212215	SOX3_SOX2	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr6_-_116447283_116447325	0.211601	SOX3_SOX2	ENST00000452729.1|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1 	ENST00000243222.4|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1
hg19_v2_chr2_-_238499131_238499206	0.211276	SOX3_SOX2	ENST00000538644.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr11_-_76155618_76155676	0.210832	SOX3_SOX2	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chrX_+_78003204_78003248	0.209978	SOX3_SOX2	ENST00000435339.3|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4 	ENST00000514744.1|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4
hg19_v2_chr20_-_17511962_17512033	0.208957	SOX3_SOX2	ENST00000377873.3|BFSP1|ENSG00000125864.7|beaded filament structural protein 1, filensin
hg19_v2_chr4_+_71063641_71063766	0.208125	SOX3_SOX2	ENST00000514097.1|ODAM|ENSG00000109205.12|odontogenic, ameloblast asssociated
hg19_v2_chr10_-_101825151_101825200	0.207966	SOX3_SOX2	ENST00000441382.1|CPN1|ENSG00000120054.7|carboxypeptidase N, polypeptide 1
hg19_v2_chr11_-_76155700_76155736	0.207709	SOX3_SOX2	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr14_-_104029013_104029168	0.207429	SOX3_SOX2	ENST00000299204.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000557666.1|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr19_-_47164386_47164456	0.207249	SOX3_SOX2	ENST00000391916.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3 	ENST00000410105.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr1_+_32538520_32538612	0.205944	SOX3_SOX2	ENST00000438825.1|TMEM39B|ENSG00000121775.13|transmembrane protein 39B 	ENST00000456834.2|TMEM39B|ENSG00000121775.13|transmembrane protein 39B 	ENST00000373634.4|TMEM39B|ENSG00000121775.13|transmembrane protein 39B 	ENST00000427288.1|TMEM39B|ENSG00000121775.13|transmembrane protein 39B
hg19_v2_chr20_+_44563267_44563354	0.205673	SOX3_SOX2	ENST00000372409.3|PCIF1|ENSG00000100982.7|PDX1 C-terminal inhibiting factor 1
hg19_v2_chr7_-_42276612_42276782	0.205559	SOX3_SOX2	ENST00000395925.3|GLI3|ENSG00000106571.8|GLI family zinc finger 3 	ENST00000437480.1|GLI3|ENSG00000106571.8|GLI family zinc finger 3
hg19_v2_chr7_-_107443652_107443675	0.203708	SOX3_SOX2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr14_+_74815116_74815202	0.203257	SOX3_SOX2	ENST00000256362.4|VRTN|ENSG00000133980.4|vertebrae development associated
hg19_v2_chr7_-_105029812_105029860	0.202485	SOX3_SOX2	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr5_+_140710061_140710252	0.202115	SOX3_SOX2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr12_-_71551868_71551882	0.200518	SOX3_SOX2	ENST00000247829.3|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr15_-_42186248_42186275	0.199937	SOX3_SOX2	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chrX_+_71401526_71401549	0.198507	SOX3_SOX2	ENST00000218432.5|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000423432.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000373669.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr14_+_77924204_77924229	0.198205	SOX3_SOX2	ENST00000555133.1|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
hg19_v2_chr9_-_35111420_35111455	0.193405	SOX3_SOX2	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr19_-_42498231_42498356	0.193342	SOX3_SOX2	ENST00000602133.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr19_+_8455077_8455083	0.192869	SOX3_SOX2	ENST00000328024.6|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr2_-_99347528_99347603	0.192639	SOX3_SOX2	ENST00000393487.1|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr16_+_31085714_31085783	0.19253	SOX3_SOX2	ENST00000300850.5|ZNF646|ENSG00000167395.10|zinc finger protein 646 	ENST00000564189.1|ZNF646|ENSG00000167395.10|zinc finger protein 646 	ENST00000428260.1|ZNF646|ENSG00000167395.10|zinc finger protein 646
hg19_v2_chr17_+_38171681_38171740	0.192455	SOX3_SOX2	ENST00000225474.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000331769.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394148.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000577675.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr19_-_23433144_23433204	0.192345	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr3_+_49977490_49977522	0.192271	SOX3_SOX2	ENST00000539992.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr10_+_82213904_82213922	0.192121	SOX3_SOX2	ENST00000429989.3|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr9_+_96338860_96338939	0.191262	SOX3_SOX2	ENST00000375376.4|PHF2|ENSG00000197724.6|PHD finger protein 2
hg19_v2_chr9_+_27109133_27109187	0.191217	SOX3_SOX2	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr15_-_40331356_40331389	0.191025	SOX3_SOX2	ENST00000560773.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein) 	ENST00000267884.6|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr15_-_40331115_40331251	0.190239	SOX3_SOX2	ENST00000558720.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr2_-_73964447_73964527	0.190194	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chr13_-_108518986_108519083	0.190145	SOX3_SOX2	ENST00000375915.2|FAM155A|ENSG00000204442.2|family with sequence similarity 155, member A
hg19_v2_chr8_+_104427581_104427677	0.189937	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr5_+_175792459_175792513	0.189892	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr19_-_20150252_20150298	0.188482	SOX3_SOX2	ENST00000595736.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000593468.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000596019.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr3_+_49977523_49977540	0.186957	SOX3_SOX2	ENST00000422955.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr5_-_118324200_118324254	0.184942	SOX3_SOX2	ENST00000515439.3|DTWD2|ENSG00000169570.5|DTW domain containing 2 	ENST00000510708.1|DTWD2|ENSG00000169570.5|DTW domain containing 2
hg19_v2_chr10_-_65028938_65028989	0.18489	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr16_+_21610797_21610850	0.184617	SOX3_SOX2	ENST00000358154.3|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr1_+_32538492_32538508	0.184377	SOX3_SOX2	ENST00000336294.5|TMEM39B|ENSG00000121775.13|transmembrane protein 39B
hg19_v2_chr14_-_105262016_105262054	0.184377	SOX3_SOX2	ENST00000407796.2|AKT1|ENSG00000142208.11|v-akt murine thymoma viral oncogene homolog 1
hg19_v2_chrX_+_150866779_150866779	0.184016	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr17_+_75283973_75284045	0.183445	SOX3_SOX2	ENST00000431235.2|SEPT9|ENSG00000184640.13|septin 9 	ENST00000449803.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr15_+_32322709_32322759	0.183243	SOX3_SOX2	ENST00000455693.2|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr19_+_50354393_50354422	0.182662	SOX3_SOX2	ENST00000391842.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr3_+_130613001_130613078	0.179792	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr3_+_130613226_130613485	0.17881	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr12_-_117628333_117628339	0.177371	SOX3_SOX2	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr3_+_183415558_183415649	0.177225	SOX3_SOX2	ENST00000305135.5|YEATS2|ENSG00000163872.11|YEATS domain containing 2
hg19_v2_chr1_+_28285973_28285973	0.176552	SOX3_SOX2	ENST00000373884.5|XKR8|ENSG00000158156.7|XK, Kell blood group complex subunit-related family, member 8
hg19_v2_chr5_+_54398463_54398480	0.176523	SOX3_SOX2	ENST00000274306.6|GZMA|ENSG00000145649.7|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)
hg19_v2_chr6_-_72130472_72130519	0.176455	SOX3_SOX2	ENST00000426635.2|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr17_+_43971643_43971748	0.175485	SOX3_SOX2	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chrX_-_13338518_13338518	0.174761	SOX3_SOX2	ENST00000380622.2|ATXN3L|ENSG00000123594.3|ataxin 3-like
hg19_v2_chr14_-_105262055_105262107	0.174637	SOX3_SOX2	ENST00000349310.3|AKT1|ENSG00000142208.11|v-akt murine thymoma viral oncogene homolog 1
hg19_v2_chr19_+_38397839_38397932	0.17199	SOX3_SOX2	ENST00000222345.6|SIPA1L3|ENSG00000105738.6|signal-induced proliferation-associated 1 like 3
hg19_v2_chr16_+_57673207_57673343	0.17186	SOX3_SOX2	ENST00000564783.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000564729.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000565976.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566508.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000544297.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr14_-_50999307_50999367	0.170977	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr16_-_279405_279462	0.169522	SOX3_SOX2	ENST00000430864.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000293872.8|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000337351.4|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000397783.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae)
hg19_v2_chr14_-_23285069_23285127	0.16937	SOX3_SOX2	ENST00000554758.1|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 	ENST00000397528.4|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr19_-_20150301_20150321	0.168294	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr8_+_23104130_23104184	0.168078	SOX3_SOX2	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr1_+_156338993_156339011	0.167863	SOX3_SOX2	ENST00000368249.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000368246.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000537040.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000400992.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000255013.3|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000451864.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene)
hg19_v2_chr19_-_58514129_58514205	0.167716	SOX3_SOX2	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr11_-_9336234_9336327	0.167334	SOX3_SOX2	ENST00000528080.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr19_-_20150014_20150085	0.166877	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr4_-_48782259_48782335	0.165129	SOX3_SOX2	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr10_+_91174314_91174403	0.164628	SOX3_SOX2	ENST00000371795.4|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr14_+_91580777_91580793	0.162891	SOX3_SOX2	ENST00000525393.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000428926.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517362.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr14_-_50999190_50999225	0.162015	SOX3_SOX2	ENST00000557390.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr17_-_73775839_73775868	0.161885	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr19_+_15052301_15052301	0.161123	SOX3_SOX2	ENST00000248072.3|OR7C2|ENSG00000127529.7|olfactory receptor, family 7, subfamily C, member 2
hg19_v2_chr14_-_95624227_95624347	0.160238	SOX3_SOX2	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chr17_+_21730180_21730256	0.158868	SOX3_SOX2	ENST00000584398.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr16_+_4674814_4674962	0.158848	SOX3_SOX2	ENST00000415496.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000587747.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000399577.5|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000588994.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase 	ENST00000586183.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr1_-_150602035_150602095	0.15855	SOX3_SOX2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr22_-_27014043_27014073	0.157463	SOX3_SOX2	ENST00000215939.2|CRYBB1|ENSG00000100122.5|crystallin, beta B1
hg19_v2_chr17_+_63133587_63133627	0.1569	SOX3_SOX2	ENST00000449996.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9 	ENST00000262406.9|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr12_+_22778116_22778139	0.156587	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr19_+_58095501_58095628	0.156281	SOX3_SOX2	ENST00000536878.2|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597850.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597219.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000598689.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000599456.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000307468.4|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1
hg19_v2_chr15_-_101792137_101792159	0.155859	SOX3_SOX2	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr6_+_83777374_83777456	0.154322	SOX3_SOX2	ENST00000349129.2|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000237163.5|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000536812.1|DOPEY1|ENSG00000083097.10|dopey family member 1
hg19_v2_chr6_+_170190417_170190475	0.154146	SOX3_SOX2	ENST00000420557.2|LINC00574|ENSG00000231690.2|long intergenic non-protein coding RNA 574
hg19_v2_chr4_+_113558612_113558669	0.152029	SOX3_SOX2	ENST00000505034.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7 	ENST00000324052.6|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr1_-_26232951_26232959	0.150957	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr8_-_9009079_9009092	0.149992	SOX3_SOX2	ENST00000519699.1|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr7_-_128415844_128415849	0.148537	SOX3_SOX2	ENST00000249389.2|OPN1SW|ENSG00000128617.2|opsin 1 (cone pigments), short-wave-sensitive
hg19_v2_chr2_-_238499337_238499423	0.148514	SOX3_SOX2	ENST00000411462.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family 	ENST00000409822.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr1_+_28696111_28696130	0.147667	SOX3_SOX2	ENST00000373839.3|PHACTR4|ENSG00000204138.8|phosphatase and actin regulator 4
hg19_v2_chr1_-_120439112_120439125	0.147464	SOX3_SOX2	ENST00000369400.1|ADAM30|ENSG00000134249.6|ADAM metallopeptidase domain 30
hg19_v2_chr7_-_22234381_22234430	0.146815	SOX3_SOX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr13_+_97874574_97874609	0.146609	SOX3_SOX2	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr14_+_20923350_20923424	0.146303	SOX3_SOX2	ENST00000555414.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000216714.3|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553681.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557344.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000398030.4|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557181.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000555839.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553368.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000556054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557592.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557150.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1
hg19_v2_chr21_-_32931290_32931341	0.14614	SOX3_SOX2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr19_-_44100275_44100302	0.144914	SOX3_SOX2	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr9_-_115819039_115819082	0.144832	SOX3_SOX2	ENST00000555206.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr1_-_155177677_155177739	0.144553	SOX3_SOX2	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr4_+_88343952_88343970	0.144536	SOX3_SOX2	ENST00000440591.2|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr7_-_32931387_32931509	0.144411	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chrX_+_119384607_119384720	0.143892	SOX3_SOX2	ENST00000326624.2|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33 	ENST00000557385.1|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33
hg19_v2_chr6_-_137366096_137366111	0.143182	SOX3_SOX2	ENST00000316649.5|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha 	ENST00000367746.3|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr14_+_21467414_21467463	0.142146	SOX3_SOX2	ENST00000554422.1|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2 	ENST00000298681.4|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2
hg19_v2_chr17_+_7621045_7621079	0.140382	SOX3_SOX2	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr3_-_184095923_184095953	0.140152	SOX3_SOX2	ENST00000445696.2|THPO|ENSG00000090534.13|thrombopoietin 	ENST00000204615.7|THPO|ENSG00000090534.13|thrombopoietin
hg19_v2_chr12_-_57522813_57522883	0.139881	SOX3_SOX2	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr12_-_9360966_9360996	0.13919	SOX3_SOX2	ENST00000261336.2|PZP|ENSG00000126838.5|pregnancy-zone protein
hg19_v2_chr12_+_14572070_14572164	0.137955	SOX3_SOX2	ENST00000545769.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000428217.2|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000396279.2|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000542514.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536279.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr1_-_202858227_202858283	0.137214	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chr17_+_40985407_40985513	0.136957	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr12_-_88974236_88974256	0.136847	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chrX_-_114252193_114252207	0.136131	SOX3_SOX2	ENST00000243213.1|IL13RA2|ENSG00000123496.3|interleukin 13 receptor, alpha 2
hg19_v2_chr7_-_142232071_142232090	0.135546	SOX3_SOX2	ENST00000390364.3|TRBV10-1|ENSG00000211717.3|T cell receptor beta variable 10-1(gene/pseudogene)
hg19_v2_chr19_+_8455200_8455301	0.135309	SOX3_SOX2	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr11_-_64546202_64546258	0.133997	SOX3_SOX2	ENST00000377390.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000227503.9|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000377394.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000422298.2|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000334944.5|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr17_-_79829190_79829282	0.133711	SOX3_SOX2	ENST00000581876.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000584461.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000583868.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000400721.4|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000269321.7|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr19_+_17326191_17326215	0.133599	SOX3_SOX2	ENST00000595101.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000596136.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000379776.4|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr20_+_39765581_39765646	0.133218	SOX3_SOX2	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr5_-_157002749_157002768	0.133189	SOX3_SOX2	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr18_-_61311485_61311532	0.133082	SOX3_SOX2	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr9_+_91003271_91003386	0.13289	SOX3_SOX2	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chr5_+_140625147_140625147	0.13252	SOX3_SOX2	ENST00000231173.3|PCDHB15|ENSG00000113248.3|protocadherin beta 15
hg19_v2_chr10_-_104953009_104953061	0.131889	SOX3_SOX2	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr16_+_54964740_54964789	0.131693	SOX3_SOX2	ENST00000394636.4|IRX5|ENSG00000176842.10|iroquois homeobox 5
hg19_v2_chr14_-_88459182_88459236	0.131325	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr3_-_49459865_49459876	0.131017	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr8_+_95653302_95653364	0.130375	SOX3_SOX2	ENST00000423620.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1 	ENST00000433389.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr22_+_37447771_37447916	0.129735	SOX3_SOX2	ENST00000402077.3|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17 	ENST00000403888.3|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17 	ENST00000456470.1|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17
hg19_v2_chr1_+_228337553_228337602	0.129431	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr5_-_131892501_131892530	0.129346	SOX3_SOX2	ENST00000450655.1|IL5|ENSG00000113525.5|interleukin 5 (colony-stimulating factor, eosinophil)
hg19_v2_chr19_-_5903714_5903809	0.129098	SOX3_SOX2	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr7_+_5938351_5938379	0.128733	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr17_-_3337135_3337135	0.128411	SOX3_SOX2	ENST00000248384.1|OR1E2|ENSG00000127780.3|olfactory receptor, family 1, subfamily E, member 2
hg19_v2_chrX_+_155227246_155227335	0.12817	SOX3_SOX2	ENST00000244174.5|IL9R|ENSG00000124334.12|interleukin 9 receptor 	ENST00000424344.3|IL9R|ENSG00000124334.12|interleukin 9 receptor
hg19_v2_chr6_+_43266063_43266097	0.127964	SOX3_SOX2	ENST00000372574.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr2_-_224467093_224467221	0.127053	SOX3_SOX2	ENST00000305409.2|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr6_+_28109703_28109716	0.126828	SOX3_SOX2	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr8_+_110346546_110346619	0.1248	SOX3_SOX2	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr6_-_108582168_108582256	0.124319	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chr22_-_22090043_22090058	0.124311	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr19_-_40324255_40324296	0.123823	SOX3_SOX2	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr7_-_50628745_50628778	0.123726	SOX3_SOX2	ENST00000380984.4|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000357936.5|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000426377.1|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase)
hg19_v2_chr14_+_101299520_101299615	0.122477	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr9_+_101705893_101705921	0.122439	SOX3_SOX2	ENST00000375001.3|COL15A1|ENSG00000204291.6|collagen, type XV, alpha 1
hg19_v2_chr10_+_94451574_94451612	0.12233	SOX3_SOX2	ENST00000492654.2|HHEX|ENSG00000152804.6|hematopoietically expressed homeobox
hg19_v2_chr3_-_69101461_69101494	0.122079	SOX3_SOX2	ENST00000543976.1|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr11_-_82997371_82997416	0.121938	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr19_+_50354430_50354448	0.120936	SOX3_SOX2	ENST00000599732.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr1_+_213123976_213124009	0.119296	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr18_+_11751493_11751507	0.119035	SOX3_SOX2	ENST00000269162.5|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr5_+_133707252_133707295	0.119011	SOX3_SOX2	ENST00000506787.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B 	ENST00000507277.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr15_-_83876758_83876770	0.118841	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chrX_-_106959631_106959775	0.118556	SOX3_SOX2	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr1_-_23670817_23670829	0.118501	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr19_+_50354462_50354482	0.118453	SOX3_SOX2	ENST00000601675.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr12_-_10151773_10151899	0.117102	SOX3_SOX2	ENST00000298527.6|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B 	ENST00000348658.4|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B
hg19_v2_chr3_-_197025447_197025533	0.117048	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr21_-_40685504_40685516	0.116037	SOX3_SOX2	ENST00000380800.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr8_+_134125727_134125747	0.115921	SOX3_SOX2	ENST00000521107.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr19_+_10764937_10764998	0.115477	SOX3_SOX2	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr16_-_8962853_8962878	0.114788	SOX3_SOX2	ENST00000565287.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa 	ENST00000311052.5|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr6_+_30594619_30594665	0.114405	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr12_+_122326662_122326768	0.112959	SOX3_SOX2	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr2_-_235405679_235405739	0.112761	SOX3_SOX2	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr2_+_70142232_70142320	0.112734	SOX3_SOX2	ENST00000540449.1|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr19_+_57791419_57791436	0.112565	SOX3_SOX2	ENST00000537645.1|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr6_-_30815936_30816035	0.112414	SOX3_SOX2	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr4_-_120549163_120549220	0.11193	SOX3_SOX2	ENST00000394439.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific 	ENST00000420633.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr11_+_35198118_35198209	0.111615	SOX3_SOX2	ENST00000525211.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526000.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000279452.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000527889.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr14_-_105531759_105531782	0.111398	SOX3_SOX2	ENST00000329797.3|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000539291.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000392585.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132
hg19_v2_chr16_+_69796209_69796275	0.110781	SOX3_SOX2	ENST00000359154.2|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2 	ENST00000561780.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2 	ENST00000563659.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2 	ENST00000448661.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr2_-_160472952_160473080	0.110127	SOX3_SOX2	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr2_-_136594740_136594760	0.110013	SOX3_SOX2	ENST00000264162.2|LCT|ENSG00000115850.5|lactase
hg19_v2_chr1_-_154150651_154150691	0.109757	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr6_+_43265992_43266003	0.109687	SOX3_SOX2	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr16_+_3162557_3162796	0.109629	SOX3_SOX2	ENST00000382192.3|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000219091.4|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000444510.2|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000414351.1|ZNF205|ENSG00000122386.6|zinc finger protein 205
hg19_v2_chr9_-_127269661_127269719	0.108392	SOX3_SOX2	ENST00000373588.4|NR5A1|ENSG00000136931.5|nuclear receptor subfamily 5, group A, member 1
hg19_v2_chr6_+_112375275_112375334	0.107888	SOX3_SOX2	ENST00000368666.2|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3 	ENST00000604763.1|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3 	ENST00000230529.5|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3
hg19_v2_chr5_+_66300446_66300463	0.107272	SOX3_SOX2	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr16_-_4817129_4817219	0.106558	SOX3_SOX2	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr12_-_81331460_81331505	0.106468	SOX3_SOX2	ENST00000549417.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr16_-_52580920_52580992	0.106028	SOX3_SOX2	ENST00000219746.9|TOX3|ENSG00000103460.12|TOX high mobility group box family member 3
hg19_v2_chr6_-_27880174_27880174	0.105995	SOX3_SOX2	ENST00000303324.2|OR2B2|ENSG00000168131.2|olfactory receptor, family 2, subfamily B, member 2
hg19_v2_chr2_-_207024233_207024327	0.105334	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr12_-_25055177_25055258	0.10512	SOX3_SOX2	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr4_-_174320687_174320687	0.104437	SOX3_SOX2	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr6_-_35464727_35464738	0.104246	SOX3_SOX2	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr14_+_91580732_91580746	0.104244	SOX3_SOX2	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr6_-_84937314_84937372	0.104136	SOX3_SOX2	ENST00000257766.4|KIAA1009|ENSG00000135315.7|KIAA1009 	ENST00000403245.3|KIAA1009|ENSG00000135315.7|KIAA1009
hg19_v2_chr6_-_146057144_146057164	0.103912	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chrX_+_37850026_37850070	0.103686	SOX3_SOX2	ENST00000341016.3|CXorf27|ENSG00000187516.5|chromosome X open reading frame 27
hg19_v2_chr6_-_52774464_52774499	0.103651	SOX3_SOX2	ENST00000370968.1|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3 	ENST00000211122.3|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3
hg19_v2_chr20_-_4795747_4795769	0.103569	SOX3_SOX2	ENST00000379376.2|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr6_-_91006627_91006641	0.103136	SOX3_SOX2	ENST00000537989.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr4_+_24797085_24797180	0.102933	SOX3_SOX2	ENST00000382120.3|SOD3|ENSG00000109610.5|superoxide dismutase 3, extracellular
hg19_v2_chr16_-_20702578_20702578	0.102873	SOX3_SOX2	ENST00000307493.4|ACSM1|ENSG00000166743.5|acyl-CoA synthetase medium-chain family member 1 	ENST00000219151.4|ACSM1|ENSG00000166743.5|acyl-CoA synthetase medium-chain family member 1
hg19_v2_chr19_+_45754505_45754577	0.101257	SOX3_SOX2	ENST00000262891.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4 	ENST00000300843.4|MARK4|ENSG00000007047.10|MAP/microtubule affinity-regulating kinase 4
hg19_v2_chr5_-_38595498_38595514	0.101256	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr4_-_100009856_100009902	0.101182	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr12_-_57634475_57634532	0.0996919	SOX3_SOX2	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr11_+_76494253_76494317	0.0990151	SOX3_SOX2	ENST00000333090.4|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr1_+_151739131_151739177	0.098964	SOX3_SOX2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr2_+_220492116_220492137	0.0986848	SOX3_SOX2	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr16_-_18911366_18911366	0.0967885	SOX3_SOX2	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr11_+_111807863_111807937	0.0958016	SOX3_SOX2	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr16_-_70239683_70239683	0.0949137	SOX3_SOX2	ENST00000601706.1|AC009060.1|ENSG00000269746.1|Uncharacterized protein
hg19_v2_chr19_+_55043977_55044008	0.0943278	SOX3_SOX2	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr4_+_175839551_175839567	0.0938064	SOX3_SOX2	ENST00000404450.4|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000514159.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29
hg19_v2_chr3_+_189507460_189507471	0.0933378	SOX3_SOX2	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr19_+_48773337_48773359	0.0924658	SOX3_SOX2	ENST00000595607.1|ZNF114|ENSG00000178150.4|zinc finger protein 114
hg19_v2_chr19_+_10222189_10222214	0.0916077	SOX3_SOX2	ENST00000321826.4|P2RY11|ENSG00000244165.1|purinergic receptor P2Y, G-protein coupled, 11
hg19_v2_chr11_+_63753883_63753929	0.0906476	SOX3_SOX2	ENST00000538426.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1 	ENST00000543004.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr19_+_45971246_45971265	0.0906257	SOX3_SOX2	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr13_-_99404875_99404942	0.0905172	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chr16_+_1832902_1833008	0.0899341	SOX3_SOX2	ENST00000262302.9|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000563136.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565987.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000543305.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000568287.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565134.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2
hg19_v2_chr8_-_53322303_53322340	0.0898263	SOX3_SOX2	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr14_+_91580357_91580454	0.0895382	SOX3_SOX2	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr9_+_82187630_82187722	0.0884758	SOX3_SOX2	ENST00000265284.6|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr1_-_113247543_113247770	0.0884493	SOX3_SOX2	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chr3_-_170744498_170744542	0.0872581	SOX3_SOX2	ENST00000382808.4|SLC2A2|ENSG00000163581.9|solute carrier family 2 (facilitated glucose transporter), member 2 	ENST00000314251.3|SLC2A2|ENSG00000163581.9|solute carrier family 2 (facilitated glucose transporter), member 2
hg19_v2_chrY_-_19992098_19992100	0.0868751	SOX3_SOX2	ENST00000544303.1|CDY2B|ENSG00000129873.6|chromodomain protein, Y-linked, 2B 	ENST00000382867.3|CDY2B|ENSG00000129873.6|chromodomain protein, Y-linked, 2B
hg19_v2_chr2_+_70142189_70142223	0.0867913	SOX3_SOX2	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr19_-_18385221_18385245	0.0867085	SOX3_SOX2	ENST00000595654.2|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000593659.1|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000599528.1|KIAA1683|ENSG00000130518.12|KIAA1683
hg19_v2_chr17_+_16284604_16284661	0.0865879	SOX3_SOX2	ENST00000395839.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000395837.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr12_+_120907622_120907696	0.0865857	SOX3_SOX2	ENST00000392509.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549649.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548342.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr14_+_39644387_39644417	0.0865129	SOX3_SOX2	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr22_+_20104947_20105003	0.0864516	SOX3_SOX2	ENST00000402752.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr1_+_236305826_236305877	0.0862833	SOX3_SOX2	ENST00000366592.3|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B 	ENST00000366591.4|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B
hg19_v2_chr2_-_242556900_242556916	0.0862077	SOX3_SOX2	ENST00000402545.1|THAP4|ENSG00000176946.7|THAP domain containing 4 	ENST00000402136.1|THAP4|ENSG00000176946.7|THAP domain containing 4
hg19_v2_chr5_+_113769205_113769227	0.0860754	SOX3_SOX2	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr9_+_134269439_134269506	0.0854546	SOX3_SOX2	ENST00000405995.1|PRRC2B|ENSG00000130723.13|proline-rich coiled-coil 2B
hg19_v2_chr20_-_50479451_50479469	0.0852247	SOX3_SOX2	ENST00000438154.1|RP5-1112F19.2|ENSG00000227964.1|RP5-1112F19.2
hg19_v2_chr2_+_106361333_106361520	0.0848988	SOX3_SOX2	ENST00000233154.4|NCK2|ENSG00000071051.9|NCK adaptor protein 2 	ENST00000451463.2|NCK2|ENSG00000071051.9|NCK adaptor protein 2
hg19_v2_chr20_-_44007014_44007033	0.0845047	SOX3_SOX2	ENST00000372726.3|TP53TG5|ENSG00000124251.6|TP53 target 5 	ENST00000537995.1|TP53TG5|ENSG00000124251.6|TP53 target 5
hg19_v2_chr4_-_88141615_88141751	0.0840902	SOX3_SOX2	ENST00000545252.1|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000425278.2|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000498875.2|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr3_+_186435065_186435126	0.0833313	SOX3_SOX2	ENST00000287611.2|KNG1|ENSG00000113889.7|kininogen 1 	ENST00000265023.4|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr22_-_31688431_31688520	0.0831911	SOX3_SOX2	ENST00000402249.3|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000443175.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000215912.5|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000441972.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr19_+_9473676_9473712	0.0827018	SOX3_SOX2	ENST00000343499.4|ZNF177|ENSG00000188629.7|zinc finger protein 177 	ENST00000592912.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr4_+_175204818_175204833	0.0823404	SOX3_SOX2	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr9_+_6716478_6716551	0.0820645	SOX3_SOX2	ENST00000452643.1|RP11-390F4.3|ENSG00000225489.2|RP11-390F4.3
hg19_v2_chr17_-_39041479_39041501	0.0812706	SOX3_SOX2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr16_-_3930724_3930735	0.0812671	SOX3_SOX2	ENST00000262367.5|CREBBP|ENSG00000005339.8|CREB binding protein
hg19_v2_chr19_-_46389359_46389376	0.0790587	SOX3_SOX2	ENST00000302165.3|IRF2BP1|ENSG00000170604.3|interferon regulatory factor 2 binding protein 1
hg19_v2_chr18_+_32820990_32821031	0.078942	SOX3_SOX2	ENST00000601719.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000591206.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000330501.7|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000261333.6|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000355632.4|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000585800.1|ZNF397|ENSG00000186812.8|zinc finger protein 397
hg19_v2_chr12_-_54673871_54673925	0.0780336	SOX3_SOX2	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr15_-_40331342_40331354	0.0778716	SOX3_SOX2	ENST00000559081.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr17_-_33446820_33446899	0.0775248	SOX3_SOX2	ENST00000592577.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000590016.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000345365.6|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000360276.3|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000357906.3|RAD51D|ENSG00000185379.16|RAD51 paralog D
hg19_v2_chr8_-_145688231_145688261	0.0770526	SOX3_SOX2	ENST00000530374.1|CYHR1|ENSG00000187954.8|cysteine/histidine-rich 1
hg19_v2_chr9_-_36400213_36400296	0.0768444	SOX3_SOX2	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr4_-_164534657_164534701	0.0765563	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr21_+_47268058_47268079	0.0758086	SOX3_SOX2	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr7_+_73868439_73868450	0.075245	SOX3_SOX2	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr17_-_18950950_18950950	0.0746918	SOX3_SOX2	ENST00000284154.5|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr8_-_110620284_110620304	0.0744539	SOX3_SOX2	ENST00000529690.1|SYBU|ENSG00000147642.12|syntabulin (syntaxin-interacting)
hg19_v2_chr14_-_23285011_23285039	0.0739885	SOX3_SOX2	ENST00000397532.3|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr10_+_71562180_71562291	0.0737265	SOX3_SOX2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr1_+_155036204_155036238	0.0732806	SOX3_SOX2	ENST00000368409.3|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000359751.4|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000556931.1|EFNA3|ENSG00000143590.9|ephrin-A3 	ENST00000505139.1|EFNA3|ENSG00000251246.1|Ephrin-A3; Uncharacterized protein; cDNA FLJ57652, highly similar to Ephrin-A3  	ENST00000427683.2|EFNA4|ENSG00000243364.3|ephrin-A4
hg19_v2_chr5_+_172386517_172386523	0.0731725	SOX3_SOX2	ENST00000519522.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr19_-_12267524_12267564	0.0729371	SOX3_SOX2	ENST00000455799.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000355738.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000439556.2|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000542938.1|ZNF625|ENSG00000257591.1|zinc finger protein 625
hg19_v2_chr2_+_71127699_71127744	0.0724744	SOX3_SOX2	ENST00000234392.2|VAX2|ENSG00000116035.2|ventral anterior homeobox 2
hg19_v2_chr16_+_16434185_16434185	0.0719872	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr19_+_17326141_17326178	0.0717135	SOX3_SOX2	ENST00000445667.2|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000263897.5|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr1_+_174417095_174417212	0.0711119	SOX3_SOX2	ENST00000367685.2|GPR52|ENSG00000203737.2|G protein-coupled receptor 52
hg19_v2_chr8_-_16043780_16043783	0.0709368	SOX3_SOX2	ENST00000445506.2|MSR1|ENSG00000038945.10|macrophage scavenger receptor 1
hg19_v2_chr1_+_171154347_171154389	0.0706003	SOX3_SOX2	ENST00000209929.7|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional) 	ENST00000441535.1|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional)
hg19_v2_chr12_+_133707161_133707202	0.0703371	SOX3_SOX2	ENST00000538918.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000540609.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000248211.6|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000543271.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000536877.1|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr3_+_46618727_46618745	0.0700482	SOX3_SOX2	ENST00000296145.5|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr20_-_48184638_48184694	0.0693446	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr11_-_35287243_35287292	0.0689321	SOX3_SOX2	ENST00000464522.2|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chrX_+_140968348_140968348	0.0686512	SOX3_SOX2	ENST00000536088.1|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3 	ENST00000443323.2|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3
hg19_v2_chr17_-_62308087_62308116	0.0686474	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr12_-_76462713_76462773	0.0683064	SOX3_SOX2	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr6_+_29429217_29429217	0.0681312	SOX3_SOX2	ENST00000396792.2|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr10_+_18429671_18429887	0.0677736	SOX3_SOX2	ENST00000282343.8|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr19_+_9732156_9732223	0.06753	SOX3_SOX2	ENST00000586614.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000587536.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000591056.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000592851.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82
hg19_v2_chr4_-_140216948_140216999	0.0674538	SOX3_SOX2	ENST00000265500.4|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr8_+_95653427_95653460	0.0671734	SOX3_SOX2	ENST00000454170.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr2_+_70121075_70121102	0.0670933	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chr18_-_64271363_64271390	0.0661989	SOX3_SOX2	ENST00000262150.2|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr8_-_38386175_38386180	0.0659027	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr1_-_235491462_235491534	0.0658312	SOX3_SOX2	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr7_+_95401851_95401876	0.0657235	SOX3_SOX2	ENST00000447467.2|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chr2_+_113735575_113735606	0.0656954	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr3_-_69171708_69171723	0.0647972	SOX3_SOX2	ENST00000420581.2|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr12_+_85673868_85673885	0.0645896	SOX3_SOX2	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr12_-_114211444_114211468	0.0637111	SOX3_SOX2	ENST00000510694.2|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000550223.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr12_-_108154925_108154945	0.0631145	SOX3_SOX2	ENST00000228437.5|PRDM4|ENSG00000110851.7|PR domain containing 4
hg19_v2_chr4_+_156680143_156680152	0.0630126	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr3_-_15540055_15540120	0.0628067	SOX3_SOX2	ENST00000605797.1|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 	ENST00000435459.2|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
hg19_v2_chr6_+_101846664_101846702	0.0621065	SOX3_SOX2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr13_-_28674693_28674747	0.0615514	SOX3_SOX2	ENST00000537084.1|FLT3|ENSG00000122025.10|fms-related tyrosine kinase 3 	ENST00000241453.7|FLT3|ENSG00000122025.10|fms-related tyrosine kinase 3 	ENST00000380982.4|FLT3|ENSG00000122025.10|fms-related tyrosine kinase 3
hg19_v2_chr16_+_8814563_8814603	0.0615269	SOX3_SOX2	ENST00000425191.2|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase 	ENST00000569156.1|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase
hg19_v2_chr9_+_39884975_39884975	0.0613407	SOX3_SOX2	ENST00000456183.2|SPATA31A2|ENSG00000204848.4|SPATA31 subfamily A, member 2
hg19_v2_chr11_+_113779704_113779727	0.0612405	SOX3_SOX2	ENST00000537778.1|HTR3B|ENSG00000149305.2|5-hydroxytryptamine (serotonin) receptor 3B, ionotropic
hg19_v2_chr12_-_11036844_11036861	0.0612385	SOX3_SOX2	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chr8_+_85095769_85095793	0.0607565	SOX3_SOX2	ENST00000518566.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr4_-_83483395_83483510	0.0605302	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr1_-_23670813_23670816	0.0598532	SOX3_SOX2	ENST00000374612.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr21_+_41239243_41239371	0.0597677	SOX3_SOX2	ENST00000328619.5|PCP4|ENSG00000183036.6|Purkinje cell protein 4
hg19_v2_chr14_+_54976546_54976602	0.0590009	SOX3_SOX2	ENST00000216420.7|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr5_+_172386419_172386480	0.0581572	SOX3_SOX2	ENST00000265100.2|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1 	ENST00000519239.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr14_+_24779376_24779394	0.0575582	SOX3_SOX2	ENST00000530080.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2
hg19_v2_chr19_+_41257084_41257125	0.0571807	SOX3_SOX2	ENST00000601393.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr1_+_32930647_32930684	0.0565397	SOX3_SOX2	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr6_-_144385698_144385742	0.0563574	SOX3_SOX2	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr3_+_9834758_9834801	0.0560094	SOX3_SOX2	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chr9_-_110540419_110540419	0.0559006	SOX3_SOX2	ENST00000398726.3|AL162389.1|ENSG00000214645.3|Uncharacterized protein
hg19_v2_chr11_-_10562710_10562782	0.0558077	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr12_-_122907091_122907186	0.0546041	SOX3_SOX2	ENST00000358808.2|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000361654.4|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000539080.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000537178.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr7_+_11013491_11013553	0.0536039	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr17_-_49198095_49198119	0.0535817	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr16_-_20556492_20556492	0.0524907	SOX3_SOX2	ENST00000568098.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr19_+_56652556_56652641	0.0524776	SOX3_SOX2	ENST00000337080.3|ZNF444|ENSG00000167685.10|zinc finger protein 444
hg19_v2_chrY_+_20137667_20137669	0.0519153	SOX3_SOX2	ENST00000250838.4|CDY2A|ENSG00000182415.8|chromodomain protein, Y-linked, 2A 	ENST00000426790.1|CDY2A|ENSG00000182415.8|chromodomain protein, Y-linked, 2A
hg19_v2_chr19_+_21324827_21324855	0.0516214	SOX3_SOX2	ENST00000600692.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000599296.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000594425.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000311048.7|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr5_+_140800638_140800795	0.0512599	SOX3_SOX2	ENST00000398587.2|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11 	ENST00000518882.1|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11
hg19_v2_chr6_-_111136513_111136525	0.0511597	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr2_-_9770706_9770753	0.0509802	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr20_+_3870024_3870072	0.0507904	SOX3_SOX2	ENST00000610179.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr1_-_3566590_3566622	0.0504821	SOX3_SOX2	ENST00000424367.1|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000378322.3|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr19_-_14785674_14785685	0.0503583	SOX3_SOX2	ENST00000253673.5|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr7_-_142207004_142207033	0.0503105	SOX3_SOX2	ENST00000426318.2|TRBV10-2|ENSG00000229769.2|T cell receptor beta variable 10-2
hg19_v2_chr18_+_6729725_6730042	0.0492733	SOX3_SOX2	ENST00000400091.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000583410.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000584387.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr14_+_24439148_24439196	0.0492444	SOX3_SOX2	ENST00000543805.1|DHRS4L2|ENSG00000187630.10|dehydrogenase/reductase (SDR family) member 4 like 2 	ENST00000534993.1|DHRS4L2|ENSG00000187630.10|dehydrogenase/reductase (SDR family) member 4 like 2
hg19_v2_chr19_-_47349395_47349412	0.0486645	SOX3_SOX2	ENST00000597020.1|AP2S1|ENSG00000042753.7|adaptor-related protein complex 2, sigma 1 subunit
hg19_v2_chr8_+_59323823_59323947	0.0482817	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr7_-_142247606_142247628	0.0482516	SOX3_SOX2	ENST00000390361.3|TRBV7-3|ENSG00000211714.3|T cell receptor beta variable 7-3
hg19_v2_chrX_-_132352373_132352384	0.0478812	SOX3_SOX2	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr6_+_168418553_168418581	0.0476219	SOX3_SOX2	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr1_+_87797351_87797441	0.0475966	SOX3_SOX2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr19_+_17326521_17326574	0.0474158	SOX3_SOX2	ENST00000593597.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr1_-_151119087_151119114	0.0466257	SOX3_SOX2	ENST00000341697.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENST00000368914.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
hg19_v2_chr2_-_232329186_232329305	0.0463377	SOX3_SOX2	ENST00000322723.4|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chrX_-_46404811_46404876	0.0457521	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chrX_-_140786896_140786896	0.0455979	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr1_+_35734562_35734573	0.0454464	SOX3_SOX2	ENST00000314607.6|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4 	ENST00000373297.2|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr2_-_48132814_48132917	0.0450809	SOX3_SOX2	ENST00000316377.4|FBXO11|ENSG00000138081.15|F-box protein 11 	ENST00000378314.3|FBXO11|ENSG00000138081.15|F-box protein 11
hg19_v2_chr6_-_32811771_32811831	0.0444861	SOX3_SOX2	ENST00000395339.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8 	ENST00000374882.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8
hg19_v2_chrX_+_84498989_84499003	0.0442319	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr6_+_134758827_134758863	0.0425641	SOX3_SOX2	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr11_-_102323489_102323576	0.0416296	SOX3_SOX2	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr17_-_42100474_42100589	0.0415341	SOX3_SOX2	ENST00000585950.1|TMEM101|ENSG00000091947.5|transmembrane protein 101 	ENST00000592127.1|TMEM101|ENSG00000091947.5|transmembrane protein 101 	ENST00000589334.1|TMEM101|ENSG00000091947.5|transmembrane protein 101
hg19_v2_chr15_-_47426320_47426320	0.0412118	SOX3_SOX2	ENST00000557832.1|FKSG62|ENSG00000259752.1|FKSG62
hg19_v2_chr18_-_78005231_78005435	0.0405047	SOX3_SOX2	ENST00000470488.2|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma 	ENST00000353265.3|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma
hg19_v2_chr3_-_64009102_64009236	0.0403632	SOX3_SOX2	ENST00000478185.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000482510.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000497323.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000492933.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000295901.4|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr1_-_49242553_49242590	0.0401377	SOX3_SOX2	ENST00000371833.3|BEND5|ENSG00000162373.8|BEN domain containing 5
hg19_v2_chrX_+_107288239_107288259	0.0380816	SOX3_SOX2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chrX_-_43832711_43832750	0.0380153	SOX3_SOX2	ENST00000378062.5|NDP|ENSG00000124479.8|Norrie disease (pseudoglioma)
hg19_v2_chr14_-_89878369_89878496	0.0373676	SOX3_SOX2	ENST00000553840.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000556916.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr5_-_83680192_83680209	0.0369166	SOX3_SOX2	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr21_+_27011584_27011618	0.0362935	SOX3_SOX2	ENST00000400532.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000480456.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000312957.5|JAM2|ENSG00000154721.10|junctional adhesion molecule 2
hg19_v2_chr17_-_49198216_49198236	0.0359427	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr3_-_116164306_116164380	0.0358976	SOX3_SOX2	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr3_+_186435137_186435158	0.0352366	SOX3_SOX2	ENST00000447445.1|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr14_+_23791159_23791231	0.035226	SOX3_SOX2	ENST00000557702.1|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr11_-_64013288_64013343	0.0351895	SOX3_SOX2	ENST00000542235.1|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr16_-_25026641_25026698	0.0348437	SOX3_SOX2	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr14_+_32546274_32546295	0.0343866	SOX3_SOX2	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr14_-_24553834_24553850	0.0332421	SOX3_SOX2	ENST00000397002.2|NRL|ENSG00000129535.8|neural retina leucine zipper
hg19_v2_chr16_-_29910365_29910430	0.0331817	SOX3_SOX2	ENST00000346932.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000350527.3|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000537485.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000568380.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr2_+_169923577_169923592	0.0331127	SOX3_SOX2	ENST00000432060.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr7_-_112727774_112727833	0.0329656	SOX3_SOX2	ENST00000297146.3|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000501255.2|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr5_+_140430979_140430979	0.0323218	SOX3_SOX2	ENST00000306549.3|PCDHB1|ENSG00000171815.3|protocadherin beta 1
hg19_v2_chr1_-_8877692_8877732	0.0321141	SOX3_SOX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr3_-_49459878_49459912	0.0315296	SOX3_SOX2	ENST00000546031.1|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000458307.2|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000430521.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr14_+_91580708_91580730	0.0308438	SOX3_SOX2	ENST00000518868.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr3_+_123813543_123813587	0.0305335	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr15_+_79166065_79166163	0.0302921	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr2_+_210444748_210444770	0.0301655	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr8_+_95653373_95653415	0.0298564	SOX3_SOX2	ENST00000358397.5|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr17_-_17740287_17740316	0.029504	SOX3_SOX2	ENST00000355815.4|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1 	ENST00000261646.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr1_-_150601588_150601631	0.0292351	SOX3_SOX2	ENST00000513281.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000361631.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000361532.5|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr9_+_124103625_124103625	0.0287099	SOX3_SOX2	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr17_-_62050278_62050278	0.0283335	SOX3_SOX2	ENST00000578147.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit 	ENST00000435607.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit
hg19_v2_chr7_-_122840015_122840040	0.027748	SOX3_SOX2	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr14_+_52456193_52456320	0.0272025	SOX3_SOX2	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr6_-_49834240_49834253	0.0265891	SOX3_SOX2	ENST00000335847.4|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr3_-_128294929_128294929	0.0265287	SOX3_SOX2	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr1_-_31902614_31902614	0.0260923	SOX3_SOX2	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr12_+_133707204_133707236	0.0259986	SOX3_SOX2	ENST00000426665.2|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr20_-_32274179_32274213	0.025756	SOX3_SOX2	ENST00000343380.5|E2F1|ENSG00000101412.9|E2F transcription factor 1
hg19_v2_chr7_+_107224364_107224391	0.0256259	SOX3_SOX2	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr1_+_22333943_22333951	0.025074	SOX3_SOX2	ENST00000400271.2|CELA3A|ENSG00000142789.15|chymotrypsin-like elastase family, member 3A
hg19_v2_chr19_-_14785622_14785667	0.0237897	SOX3_SOX2	ENST00000443157.2|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr1_+_214161854_214161892	0.022821	SOX3_SOX2	ENST00000435016.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr3_-_69101413_69101457	0.0226318	SOX3_SOX2	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr14_-_89021077_89021230	0.0222031	SOX3_SOX2	ENST00000556564.1|PTPN21|ENSG00000070778.8|protein tyrosine phosphatase, non-receptor type 21
hg19_v2_chr9_+_82187487_82187557	0.0221244	SOX3_SOX2	ENST00000435650.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000414465.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376537.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376534.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr19_+_36132631_36132695	0.0217208	SOX3_SOX2	ENST00000379026.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000379023.4|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000402764.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000479824.1|ETV2|ENSG00000105672.10|ets variant 2
hg19_v2_chr16_-_5116025_5116111	0.0208796	SOX3_SOX2	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr7_+_29234375_29234558	0.0208631	SOX3_SOX2	ENST00000409350.1|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000495789.2|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000539389.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr15_+_57210818_57210930	0.0207225	SOX3_SOX2	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr7_+_16828866_16828866	0.020706	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr6_+_44355257_44355315	0.0202738	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr9_-_88896977_88897023	0.0198411	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr1_+_109419596_109419640	0.0197826	SOX3_SOX2	ENST00000435987.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2 	ENST00000264126.3|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr19_-_21950362_21950430	0.0197014	SOX3_SOX2	ENST00000358296.6|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr9_+_41500679_41500679	0.0196321	SOX3_SOX2	ENST00000377621.1|SPATA31A5|ENSG00000233788.4|SPATA31 subfamily A, member 5
hg19_v2_chr22_+_20105259_20105476	0.0191676	SOX3_SOX2	ENST00000416427.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000421656.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000423859.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000418705.2|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr7_-_76829125_76829143	0.0189474	SOX3_SOX2	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr19_-_6502304_6502328	0.0188977	SOX3_SOX2	ENST00000540257.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000594276.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000594075.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000600216.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000596926.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa
hg19_v2_chr1_-_157108266_157108347	0.0179082	SOX3_SOX2	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr16_-_15736881_15736928	0.0173366	SOX3_SOX2	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr9_+_112403059_112403079	0.0171675	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr9_+_27109392_27109435	0.0170337	SOX3_SOX2	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr3_+_54157480_54157547	0.0170307	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr5_-_134734901_134734931	0.0162341	SOX3_SOX2	ENST00000312469.4|H2AFY|ENSG00000113648.12|H2A histone family, member Y 	ENST00000423969.2|H2AFY|ENSG00000113648.12|H2A histone family, member Y
hg19_v2_chr19_-_58400372_58400411	0.0160048	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr7_+_73868220_73868300	0.0156434	SOX3_SOX2	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr2_+_166428839_166428859	0.0153881	SOX3_SOX2	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr8_+_105235572_105235610	0.01499	SOX3_SOX2	ENST00000523362.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr19_-_51472823_51472929	0.0149863	SOX3_SOX2	ENST00000310157.2|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr14_+_91581011_91581044	0.0143595	SOX3_SOX2	ENST00000523894.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522322.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523771.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr1_+_32084641_32084641	0.0136232	SOX3_SOX2	ENST00000373706.5|HCRTR1|ENSG00000121764.7|hypocretin (orexin) receptor 1
hg19_v2_chr2_+_220492287_220492338	0.0132278	SOX3_SOX2	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr2_+_71205510_71205637	0.0130559	SOX3_SOX2	ENST00000272421.6|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53 	ENST00000441349.1|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53 	ENST00000457410.1|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53
hg19_v2_chr13_-_114843416_114843438	0.0130512	SOX3_SOX2	ENST00000389544.4|RASA3|ENSG00000185989.9|RAS p21 protein activator 3
hg19_v2_chr1_-_3528034_3528077	0.0117501	SOX3_SOX2	ENST00000356575.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr10_+_18429606_18429670	0.0114979	SOX3_SOX2	ENST00000324631.7|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit 	ENST00000352115.6|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit 	ENST00000377328.1|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr20_+_61448376_61448418	0.0110752	SOX3_SOX2	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr19_-_48673552_48673578	0.010523	SOX3_SOX2	ENST00000536218.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent 	ENST00000596549.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr12_+_22778009_22778112	0.0103966	SOX3_SOX2	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chrX_+_70435044_70435109	0.00974134	SOX3_SOX2	ENST00000374029.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000374022.3|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000447581.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr18_-_13915530_13915540	0.0090815	SOX3_SOX2	ENST00000327606.3|MC2R|ENSG00000185231.4|melanocortin 2 receptor (adrenocorticotropic hormone)
hg19_v2_chr12_-_96793844_96793855	0.00795494	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr14_-_65569057_65569119	0.00775943	SOX3_SOX2	ENST00000555419.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000341653.2|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr11_+_63137251_63137280	0.00751352	SOX3_SOX2	ENST00000310969.4|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9 	ENST00000279178.3|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9
hg19_v2_chr17_+_72581057_72581057	0.00719249	SOX3_SOX2	ENST00000392620.1|C17orf77|ENSG00000182352.4|chromosome 17 open reading frame 77
hg19_v2_chr22_-_32341336_32341336	0.00685846	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr13_+_45694583_45694696	0.0059841	SOX3_SOX2	ENST00000340473.6|GTF2F2|ENSG00000188342.7|general transcription factor IIF, polypeptide 2, 30kDa
hg19_v2_chr3_-_64009658_64009687	0.00533532	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr2_-_74570520_74570547	0.00428175	SOX3_SOX2	ENST00000394019.2|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000346834.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000359484.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000423644.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000377634.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000436454.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5
hg19_v2_chr6_-_46620522_46620560	0.00358962	SOX3_SOX2	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr3_-_172312460_172312516	0.00351736	SOX3_SOX2	ENST00000418839.2|RP11-408H1.3|ENSG00000223387.2|RP11-408H1.3
hg19_v2_chr15_+_93749295_93749295	0.0034526	SOX3_SOX2	ENST00000599897.1|AC112693.2|ENSG00000269360.1|AC112693.2
hg19_v2_chr12_-_13248705_13248710	0.00318308	SOX3_SOX2	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr1_-_23670752_23670803	0.00309273	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr12_+_49372251_49372398	0.00304914	SOX3_SOX2	ENST00000293549.3|WNT1|ENSG00000125084.7|wingless-type MMTV integration site family, member 1
hg19_v2_chr5_-_147211226_147211349	0.00295664	SOX3_SOX2	ENST00000296695.5|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr6_-_49834209_49834220	0.00286334	SOX3_SOX2	ENST00000507853.1|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr1_-_78149041_78149142	0.0027572	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr12_+_99038998_99039078	0.000574025	SOX3_SOX2	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr16_+_15068955_15068991	0.000174286	SOX3_SOX2	ENST00000396410.4|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000569715.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000450288.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr22_-_23484246_23484283	4.97167e-05	SOX3_SOX2	ENST00000216036.4|RTDR1|ENSG00000100218.7|rhabdoid tumor deletion region gene 1
