hg19_v2_chr6_-_128841503_128841870	3.50212	SOX9	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr12_-_6233828_6233843	3.24566	SOX9	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chrX_-_38080077_38080177	2.92086	SOX9	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chr5_-_16936340_16936418	2.91979	SOX9	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr7_+_134464414_134464429	2.69724	SOX9	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr7_-_27205136_27205164	2.26504	SOX9	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chr2_-_151344172_151344243	2.24914	SOX9	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr7_+_134464376_134464413	2.11547	SOX9	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_-_68698222_68698266	2.08141	SOX9	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr2_-_1748214_1748295	2.00235	SOX9	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr7_-_131241361_131241398	1.7611	SOX9	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr5_-_146833485_146833522	1.65901	SOX9	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr3_-_149688896_149688970	1.58351	SOX9	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr3_-_149688502_149688526	1.57547	SOX9	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr7_-_11871815_11871831	1.56113	SOX9	ENST00000423059.4|THSD7A|ENSG00000005108.11|thrombospondin, type I, domain containing 7A
hg19_v2_chr9_+_116263778_116263793	1.53044	SOX9	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr9_+_116263639_116263707	1.51915	SOX9	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr17_-_39743139_39743173	1.43971	SOX9	ENST00000167586.6|KRT14|ENSG00000186847.5|keratin 14
hg19_v2_chr3_-_149688655_149688737	1.38922	SOX9	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr1_-_79472365_79472443	1.36707	SOX9	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr7_+_16793160_16793160	1.36023	SOX9	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr5_+_76011868_76012005	1.35704	SOX9	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr5_-_39425222_39425283	1.34695	SOX9	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr7_-_107643674_107643700	1.33868	SOX9	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr4_-_186732048_186732225	1.32912	SOX9	ENST00000448662.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439049.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000420158.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000431808.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319471.9|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr14_+_85996471_85996497	1.31435	SOX9	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr1_+_93913713_93913839	1.2992	SOX9	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr16_+_66400533_66400545	1.29598	SOX9	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr5_-_39425290_39425336	1.29356	SOX9	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr16_+_3068393_3068446	1.26179	SOX9	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr6_+_148663729_148663847	1.23179	SOX9	ENST00000367467.3|SASH1|ENSG00000111961.12|SAM and SH3 domain containing 1
hg19_v2_chr6_+_114178512_114178586	1.22894	SOX9	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr7_-_111846435_111846471	1.20541	SOX9	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr1_-_68698197_68698214	1.18538	SOX9	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr12_-_52887034_52887049	1.1734	SOX9	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr22_-_19512893_19512946	1.10702	SOX9	ENST00000403084.1|CLDN5|ENSG00000184113.8|claudin 5 	ENST00000413119.2|CLDN5|ENSG00000184113.8|claudin 5
hg19_v2_chr12_-_10251603_10251619	1.079	SOX9	ENST00000457018.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr18_+_3449821_3450034	1.03546	SOX9	ENST00000407501.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000405385.3|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000546979.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr12_-_10251576_10251599	1.02428	SOX9	ENST00000315330.4|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr2_+_102314161_102314206	1.0193	SOX9	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr12_-_10251539_10251560	1.01436	SOX9	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr1_+_43766642_43766667	1.0138	SOX9	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr2_+_217498105_217498129	1.01267	SOX9	ENST00000233809.4|IGFBP2|ENSG00000115457.5|insulin-like growth factor binding protein 2, 36kDa
hg19_v2_chr22_+_38142235_38142297	1.00731	SOX9	ENST00000407319.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000403663.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000428075.1|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein
hg19_v2_chr10_-_105845674_105845760	0.991948	SOX9	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr12_+_49212514_49212692	0.966939	SOX9	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr5_-_39425068_39425098	0.960588	SOX9	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr8_-_82395461_82395498	0.956234	SOX9	ENST00000256104.4|FABP4|ENSG00000170323.4|fatty acid binding protein 4, adipocyte
hg19_v2_chr2_-_175869936_175869954	0.94578	SOX9	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr14_+_85996507_85996572	0.919938	SOX9	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr4_-_2264015_2264041	0.908622	SOX9	ENST00000337190.2|MXD4|ENSG00000123933.10|MAX dimerization protein 4
hg19_v2_chr4_+_175204818_175204833	0.895637	SOX9	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr8_+_79578282_79578334	0.893572	SOX9	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr18_-_21891460_21891506	0.890167	SOX9	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr1_-_225840747_225840860	0.879535	SOX9	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr15_+_71184931_71184974	0.870922	SOX9	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr12_-_71003568_71003629	0.866488	SOX9	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr5_+_15500280_15500312	0.844161	SOX9	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr5_-_146889619_146889639	0.829275	SOX9	ENST00000343218.5|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr2_-_55277692_55277734	0.799743	SOX9	ENST00000394611.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr18_+_3451646_3451722	0.782555	SOX9	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr8_+_26435359_26435426	0.774842	SOX9	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr18_+_7946941_7946952	0.769762	SOX9	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr2_-_55277654_55277685	0.754024	SOX9	ENST00000337526.6|RTN4|ENSG00000115310.13|reticulon 4 	ENST00000317610.7|RTN4|ENSG00000115310.13|reticulon 4 	ENST00000357732.4|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr11_+_77532233_77532244	0.747727	SOX9	ENST00000525409.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing
hg19_v2_chr3_+_113616317_113616364	0.735399	SOX9	ENST00000440446.2|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C 	ENST00000488680.1|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C
hg19_v2_chr8_-_93115445_93115462	0.72487	SOX9	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr18_+_56530794_56530845	0.710806	SOX9	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr12_-_95611149_95611249	0.70109	SOX9	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr5_+_40679584_40679600	0.700181	SOX9	ENST00000302472.3|PTGER4|ENSG00000171522.5|prostaglandin E receptor 4 (subtype EP4)
hg19_v2_chr7_+_77167376_77167395	0.697594	SOX9	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr7_+_18535346_18535399	0.696499	SOX9	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr2_-_55277512_55277533	0.696295	SOX9	ENST00000402434.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr2_-_55277436_55277464	0.69399	SOX9	ENST00000354474.6|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr11_+_60691924_60691966	0.692375	SOX9	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr18_-_53177984_53178004	0.685967	SOX9	ENST00000543082.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr17_-_7297519_7297593	0.677677	SOX9	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr19_+_16187816_16187838	0.664456	SOX9	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr9_+_103235365_103235419	0.659711	SOX9	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr1_+_66458072_66458109	0.657221	SOX9	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr3_-_57583052_57583079	0.654381	SOX9	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr3_+_43328004_43328095	0.652812	SOX9	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr12_-_8815299_8815331	0.625596	SOX9	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr1_+_155293702_155293729	0.622755	SOX9	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr22_-_22292934_22292967	0.621349	SOX9	ENST00000538191.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000424647.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000407142.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F
hg19_v2_chr1_+_155294342_155294368	0.621062	SOX9	ENST00000292254.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr9_+_27109133_27109187	0.616138	SOX9	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr3_-_57583130_57583152	0.613856	SOX9	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr19_+_48972459_48972490	0.610358	SOX9	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr15_+_85923797_85923844	0.607556	SOX9	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr7_+_12727250_12727265	0.605985	SOX9	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr17_-_7297833_7297889	0.594285	SOX9	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr19_-_44124019_44124030	0.594151	SOX9	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr3_+_51422478_51422478	0.586608	SOX9	ENST00000528157.1|MANF|ENSG00000145050.11|mesencephalic astrocyte-derived neurotrophic factor
hg19_v2_chr5_-_146833222_146833261	0.576606	SOX9	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr20_-_17662878_17662940	0.573888	SOX9	ENST00000377813.1|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000377807.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000360807.4|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000398782.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr12_-_8815215_8815298	0.572524	SOX9	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr1_+_155294264_155294332	0.568967	SOX9	ENST00000368349.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr7_+_116312411_116312502	0.559312	SOX9	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr5_+_140739537_140739703	0.553907	SOX9	ENST00000522605.1|PCDHGB2|ENSG00000253910.1|protocadherin gamma subfamily B, 2
hg19_v2_chr4_+_78078304_78078406	0.553175	SOX9	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr11_+_77532155_77532210	0.542651	SOX9	ENST00000532481.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000526415.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000393427.2|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000527134.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000304716.8|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing
hg19_v2_chr10_+_71812552_71812573	0.535803	SOX9	ENST00000373255.4|H2AFY2|ENSG00000099284.9|H2A histone family, member Y2
hg19_v2_chr17_+_8213590_8213603	0.525855	SOX9	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr4_+_154125565_154125626	0.515861	SOX9	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr2_-_55276320_55276334	0.515272	SOX9	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr7_-_27219849_27219880	0.493514	SOX9	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr14_+_59655369_59655458	0.482562	SOX9	ENST00000360909.3|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000351081.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000556135.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1
hg19_v2_chr3_-_123339418_123339473	0.479885	SOX9	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr16_+_15528332_15528385	0.471334	SOX9	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr5_+_140729649_140729828	0.471235	SOX9	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr11_-_6677018_6677085	0.469503	SOX9	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr5_+_140593509_140593509	0.468192	SOX9	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chrY_+_15016013_15016029	0.463115	SOX9	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr1_+_200708671_200708744	0.45223	SOX9	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr16_-_89556942_89557020	0.451117	SOX9	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr13_+_98795434_98795480	0.447646	SOX9	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr13_+_98795505_98795522	0.446152	SOX9	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr10_+_102106829_102106881	0.445756	SOX9	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr6_-_11232891_11232915	0.445281	SOX9	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr3_-_123339343_123339401	0.445183	SOX9	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr4_-_149363662_149363688	0.442513	SOX9	ENST00000355292.3|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2 	ENST00000358102.3|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2
hg19_v2_chr17_-_73505961_73505976	0.434192	SOX9	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr8_+_102504651_102504683	0.431632	SOX9	ENST00000251808.3|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila) 	ENST00000521085.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr20_-_17662705_17662874	0.429848	SOX9	ENST00000455029.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr5_-_141338627_141338627	0.422791	SOX9	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr12_-_49582978_49583107	0.41348	SOX9	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr5_+_74633036_74633085	0.411743	SOX9	ENST00000343975.5|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr11_+_128563948_128564003	0.411664	SOX9	ENST00000534087.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr6_+_56954867_56954882	0.409545	SOX9	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr1_+_25071848_25071944	0.396016	SOX9	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr3_-_88108212_88108223	0.390009	SOX9	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr7_+_26191809_26191890	0.381153	SOX9	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr5_+_140797296_140797427	0.376261	SOX9	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr20_-_43150601_43150751	0.373671	SOX9	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr1_+_64239657_64239724	0.372134	SOX9	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr18_-_34408902_34409022	0.371336	SOX9	ENST00000593035.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000383056.3|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000588909.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000590337.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr7_+_16685756_16685820	0.369555	SOX9	ENST00000415365.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000258761.3|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000433922.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000452975.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000405202.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2
hg19_v2_chrX_-_45060135_45060149	0.361335	SOX9	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr5_+_74632993_74633028	0.359854	SOX9	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr12_+_53443680_53443858	0.358481	SOX9	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr19_-_8408139_8408153	0.355039	SOX9	ENST00000330915.3|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000593649.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000595639.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3
hg19_v2_chr1_+_164528866_164528877	0.353889	SOX9	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr11_+_13299186_13299432	0.349967	SOX9	ENST00000527998.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000396441.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000533520.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529825.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389707.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000401424.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529388.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000530357.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403290.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000361003.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389708.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403510.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000482049.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like
hg19_v2_chr11_+_131781290_131781362	0.34995	SOX9	ENST00000425719.2|NTM|ENSG00000182667.10|neurotrimin 	ENST00000374784.1|NTM|ENSG00000182667.10|neurotrimin
hg19_v2_chr14_-_55878538_55878576	0.346786	SOX9	ENST00000247178.5|ATG14|ENSG00000126775.8|autophagy related 14
hg19_v2_chr7_+_128379346_128379447	0.343784	SOX9	ENST00000535011.2|CALU|ENSG00000128595.12|calumenin 	ENST00000542996.2|CALU|ENSG00000128595.12|calumenin 	ENST00000535623.1|CALU|ENSG00000128595.12|calumenin 	ENST00000538546.1|CALU|ENSG00000128595.12|calumenin 	ENST00000249364.4|CALU|ENSG00000128595.12|calumenin 	ENST00000449187.2|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr14_-_88459503_88459615	0.343763	SOX9	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr8_+_70378852_70378866	0.340447	SOX9	ENST00000525061.1|SULF1|ENSG00000137573.9|sulfatase 1 	ENST00000458141.2|SULF1|ENSG00000137573.9|sulfatase 1 	ENST00000260128.4|SULF1|ENSG00000137573.9|sulfatase 1
hg19_v2_chr9_+_27109392_27109435	0.340115	SOX9	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr11_-_75236867_75236968	0.340095	SOX9	ENST00000376282.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5 	ENST00000336898.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5
hg19_v2_chr10_+_70748487_70748498	0.333407	SOX9	ENST00000361983.4|KIAA1279|ENSG00000198954.4|KIAA1279
hg19_v2_chr5_+_140767452_140767452	0.330905	SOX9	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr22_+_38864041_38864150	0.321425	SOX9	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr3_+_49507559_49507580	0.321229	SOX9	ENST00000421560.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000308775.2|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000545947.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000541308.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000539901.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000538711.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000418588.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1)
hg19_v2_chr16_+_14802801_14802801	0.320078	SOX9	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr18_-_34409116_34409158	0.314719	SOX9	ENST00000334295.4|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr3_+_25469802_25469866	0.312822	SOX9	ENST00000330688.4|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr20_+_42086525_42086568	0.292259	SOX9	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr19_+_42580274_42580375	0.292248	SOX9	ENST00000359044.4|ZNF574|ENSG00000105732.9|zinc finger protein 574
hg19_v2_chr1_-_21503337_21503407	0.291127	SOX9	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr16_-_15474904_15474904	0.290816	SOX9	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr3_-_52001448_52001478	0.290402	SOX9	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr15_-_59041768_59041950	0.286703	SOX9	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr19_-_44123734_44123796	0.286416	SOX9	ENST00000598676.1|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr12_+_53443963_53443970	0.286169	SOX9	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr3_-_88108192_88108203	0.285807	SOX9	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr1_-_26232522_26232644	0.285006	SOX9	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr14_+_91580777_91580793	0.284975	SOX9	ENST00000525393.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000428926.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517362.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr7_+_99699280_99699335	0.284706	SOX9	ENST00000421755.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit
hg19_v2_chr19_-_1568057_1568142	0.282341	SOX9	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr8_-_38326119_38326134	0.282048	SOX9	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr20_-_39317868_39317884	0.280851	SOX9	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr14_+_91580357_91580454	0.277578	SOX9	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr14_+_91580732_91580746	0.276268	SOX9	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr16_-_19533404_19533467	0.275148	SOX9	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr16_+_27561449_27561481	0.271882	SOX9	ENST00000261588.4|KIAA0556|ENSG00000047578.8|KIAA0556
hg19_v2_chr1_-_113247543_113247770	0.271716	SOX9	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chr8_+_133787586_133787673	0.268651	SOX9	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr3_-_11623804_11623865	0.264413	SOX9	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr14_+_91580708_91580730	0.26291	SOX9	ENST00000518868.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr15_+_41136216_41136252	0.256196	SOX9	ENST00000562057.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1 	ENST00000344051.4|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr7_-_16685422_16685448	0.255563	SOX9	ENST00000306999.2|ANKMY2|ENSG00000106524.4|ankyrin repeat and MYND domain containing 2
hg19_v2_chr19_+_36359341_36359352	0.25548	SOX9	ENST00000221891.4|APLP1|ENSG00000105290.7|amyloid beta (A4) precursor-like protein 1
hg19_v2_chr7_+_100450328_100450399	0.252239	SOX9	ENST00000540482.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000418037.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000428758.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000275729.3|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000415287.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000354161.3|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9 	ENST00000416675.1|SLC12A9|ENSG00000146828.13|solute carrier family 12, member 9
hg19_v2_chr7_+_99699179_99699214	0.25189	SOX9	ENST00000438383.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit 	ENST00000429084.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit 	ENST00000359593.4|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit 	ENST00000439416.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit
hg19_v2_chr9_+_35538616_35538650	0.251658	SOX9	ENST00000455600.1|RUSC2|ENSG00000198853.7|RUN and SH3 domain containing 2
hg19_v2_chr11_+_126225529_126225660	0.248552	SOX9	ENST00000227495.6|ST3GAL4|ENSG00000110080.14|ST3 beta-galactoside alpha-2,3-sialyltransferase 4 	ENST00000444328.2|ST3GAL4|ENSG00000110080.14|ST3 beta-galactoside alpha-2,3-sialyltransferase 4 	ENST00000356132.4|ST3GAL4|ENSG00000110080.14|ST3 beta-galactoside alpha-2,3-sialyltransferase 4
hg19_v2_chr6_+_89790459_89790479	0.247617	SOX9	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr2_+_220492116_220492137	0.247077	SOX9	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr11_+_64949899_64949941	0.24707	SOX9	ENST00000531068.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527699.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533909.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527323.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr14_+_91581011_91581044	0.245892	SOX9	ENST00000523894.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522322.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523771.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr1_-_243418621_243418648	0.242645	SOX9	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr15_+_85144217_85144281	0.242551	SOX9	ENST00000540936.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000448803.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546275.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546148.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000442073.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000334141.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000358472.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000502939.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000379358.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000327179.6|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2
hg19_v2_chr3_+_189507432_189507459	0.240169	SOX9	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr11_+_1860200_1860219	0.236533	SOX9	ENST00000381911.1|TNNI2|ENSG00000130598.11|troponin I type 2 (skeletal, fast)
hg19_v2_chr10_-_13390270_13390316	0.23384	SOX9	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr9_+_34179003_34179064	0.232661	SOX9	ENST00000545103.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000543944.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000536252.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000540348.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000297661.4|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000379186.4|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1
hg19_v2_chr2_+_220491973_220492049	0.227435	SOX9	ENST00000358055.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr16_-_53737795_53737850	0.222986	SOX9	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr11_-_44971702_44971759	0.22159	SOX9	ENST00000533940.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11 	ENST00000533937.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11
hg19_v2_chr16_+_89989687_89989774	0.220946	SOX9	ENST00000315491.7|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000555576.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000554336.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000553967.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr4_-_110723335_110723356	0.21587	SOX9	ENST00000394634.2|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr3_-_48754599_48754711	0.215776	SOX9	ENST00000413654.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000454335.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000440424.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449610.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443964.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000417896.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000413298.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449563.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443853.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000437427.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000446860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000412850.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000424035.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000340879.4|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000431721.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000434860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000328631.5|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000432678.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2
hg19_v2_chr16_-_67514982_67515140	0.214014	SOX9	ENST00000565835.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000540149.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000290949.3|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
hg19_v2_chr1_+_68150744_68150890	0.212756	SOX9	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr18_-_34408693_34408780	0.212663	SOX9	ENST00000587382.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000589049.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000587129.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr4_-_110723194_110723207	0.208354	SOX9	ENST00000394635.3|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr9_-_35111570_35111600	0.207432	SOX9	ENST00000378561.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000603301.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr14_+_24641062_24641246	0.207159	SOX9	ENST00000311457.3|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000557806.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000559919.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr1_+_26503894_26504025	0.206573	SOX9	ENST00000361530.6|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1 	ENST00000374253.5|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1
hg19_v2_chr12_+_54674482_54674564	0.201918	SOX9	ENST00000547708.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000340913.6|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000551702.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000330752.8|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000547276.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1
hg19_v2_chr16_-_53737722_53737790	0.199003	SOX9	ENST00000569716.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562588.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562230.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000379925.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000563746.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000568653.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr16_+_524850_524883	0.195764	SOX9	ENST00000450428.1|RAB11FIP3|ENSG00000090565.11|RAB11 family interacting protein 3 (class II) 	ENST00000452814.1|RAB11FIP3|ENSG00000090565.11|RAB11 family interacting protein 3 (class II)
hg19_v2_chr8_-_101965559_101965570	0.19282	SOX9	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr12_+_110011571_110011644	0.191896	SOX9	ENST00000539696.1|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000228510.3|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000392727.3|MVK|ENSG00000110921.7|mevalonate kinase
hg19_v2_chr16_+_22524844_22525003	0.191884	SOX9	ENST00000538606.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000424340.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000517539.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000528249.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr10_+_104535994_104536014	0.190278	SOX9	ENST00000369889.4|WBP1L|ENSG00000166272.12|WW domain binding protein 1-like
hg19_v2_chr8_-_38326139_38326161	0.190203	SOX9	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr18_-_34408802_34408807	0.189861	SOX9	ENST00000590842.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr7_+_128379449_128379463	0.189046	SOX9	ENST00000479257.1|CALU|ENSG00000128595.12|calumenin
hg19_v2_chrX_+_68048803_68048892	0.18792	SOX9	ENST00000204961.4|EFNB1|ENSG00000090776.5|ephrin-B1
hg19_v2_chr17_+_57642886_57643006	0.185452	SOX9	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr6_+_89790490_89790506	0.183701	SOX9	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr12_+_22778116_22778139	0.18033	SOX9	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr5_+_170288856_170288920	0.179667	SOX9	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr4_-_110723134_110723181	0.178476	SOX9	ENST00000510800.1|CFI|ENSG00000205403.8|complement factor I 	ENST00000512148.1|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr16_-_1661988_1662111	0.176167	SOX9	ENST00000426508.2|IFT140|ENSG00000187535.9|intraflagellar transport 140 homolog (Chlamydomonas)
hg19_v2_chr11_-_117103208_117103288	0.174791	SOX9	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr17_+_35851570_35851667	0.172535	SOX9	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chrX_+_46306624_46306709	0.171666	SOX9	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr6_+_30594619_30594665	0.169886	SOX9	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr19_-_7694417_7694459	0.164638	SOX9	ENST00000358368.4|XAB2|ENSG00000076924.7|XPA binding protein 2 	ENST00000534844.1|XAB2|ENSG00000076924.7|XPA binding protein 2
hg19_v2_chr19_-_17375541_17375605	0.160389	SOX9	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr12_-_10151773_10151899	0.155539	SOX9	ENST00000298527.6|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B 	ENST00000348658.4|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B
hg19_v2_chr2_-_175629135_175629148	0.154549	SOX9	ENST00000409542.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000409219.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle)
hg19_v2_chr9_-_35111420_35111455	0.15167	SOX9	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr7_+_77167343_77167369	0.151656	SOX9	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr10_+_97803151_97803348	0.151619	SOX9	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr19_+_7580944_7581031	0.151381	SOX9	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr8_-_101965146_101965236	0.151178	SOX9	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr10_+_94050913_94050965	0.151052	SOX9	ENST00000358935.2|MARCH5|ENSG00000198060.5|membrane-associated ring finger (C3HC4) 5
hg19_v2_chr7_-_148725733_148725759	0.149742	SOX9	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr19_+_12949251_12949370	0.14868	SOX9	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr8_+_11660227_11660306	0.148106	SOX9	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr1_+_150039369_150039444	0.14783	SOX9	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr14_-_88459182_88459236	0.147228	SOX9	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr12_+_22778009_22778112	0.145825	SOX9	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr5_+_50678921_50678921	0.14291	SOX9	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr19_+_54641444_54641504	0.142365	SOX9	ENST00000221232.5|CNOT3|ENSG00000088038.13|CCR4-NOT transcription complex, subunit 3 	ENST00000358389.3|CNOT3|ENSG00000088038.13|CCR4-NOT transcription complex, subunit 3
hg19_v2_chr9_-_123476719_123476810	0.142205	SOX9	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr1_-_151689259_151689290	0.141102	SOX9	ENST00000420342.1|CELF3|ENSG00000159409.10|CUGBP, Elav-like family member 3 	ENST00000290583.4|CELF3|ENSG00000159409.10|CUGBP, Elav-like family member 3
hg19_v2_chr16_+_1662326_1662442	0.141011	SOX9	ENST00000397412.3|CRAMP1L|ENSG00000007545.11|Crm, cramped-like (Drosophila)
hg19_v2_chr13_+_53029564_53029650	0.138598	SOX9	ENST00000468284.1|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000378034.3|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000258607.5|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000378037.5|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2
hg19_v2_chr4_+_78079570_78079586	0.13661	SOX9	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr14_-_65569057_65569119	0.132128	SOX9	ENST00000555419.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000341653.2|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr17_+_57232690_57232860	0.13089	SOX9	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr17_-_40306934_40307035	0.12918	SOX9	ENST00000592574.1|CTD-2132N18.3|ENSG00000267261.1|Uncharacterized protein  	ENST00000550406.1|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000547517.1|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000393860.3|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000346213.4|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family
hg19_v2_chr2_+_220492287_220492338	0.126818	SOX9	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr6_-_105850937_105850983	0.124524	SOX9	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr1_+_155579979_155580032	0.124321	SOX9	ENST00000452804.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000538143.1|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000245564.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000368341.4|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator
hg19_v2_chr11_+_64949343_64949454	0.123661	SOX9	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr12_+_53845879_53846152	0.121127	SOX9	ENST00000359282.5|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000603815.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000447282.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000437231.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000549863.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000359462.5|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000550520.2|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000546463.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000552296.2|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2
hg19_v2_chr1_-_26233423_26233482	0.120304	SOX9	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr16_+_3704822_3704836	0.11769	SOX9	ENST00000414110.2|DNASE1|ENSG00000213918.6|deoxyribonuclease I
hg19_v2_chr8_+_11660120_11660221	0.117449	SOX9	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr19_-_1592652_1592762	0.116782	SOX9	ENST00000156825.1|MBD3|ENSG00000071655.13|methyl-CpG binding domain protein 3 	ENST00000434436.3|MBD3|ENSG00000071655.13|methyl-CpG binding domain protein 3
hg19_v2_chr15_-_34659349_34659479	0.113297	SOX9	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr3_+_111718036_111718047	0.108727	SOX9	ENST00000455401.2|TAGLN3|ENSG00000144834.8|transgelin 3
hg19_v2_chr11_-_8190534_8190602	0.107766	SOX9	ENST00000309737.6|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000425599.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000539720.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000531450.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000419822.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000335425.7|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000343202.4|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone
hg19_v2_chrX_-_130037198_130037234	0.107727	SOX9	ENST00000370935.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000338144.3|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000394363.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr12_-_91398796_91398808	0.107503	SOX9	ENST00000261172.3|EPYC|ENSG00000083782.3|epiphycan 	ENST00000551767.1|EPYC|ENSG00000083782.3|epiphycan
hg19_v2_chr1_-_157014865_157014865	0.107011	SOX9	ENST00000361409.2|ARHGEF11|ENSG00000132694.14|Rho guanine nucleotide exchange factor (GEF) 11
hg19_v2_chr1_-_152297679_152297722	0.10578	SOX9	ENST00000368799.1|FLG|ENSG00000143631.10|filaggrin
hg19_v2_chr6_+_29691198_29691241	0.102498	SOX9	ENST00000440587.2|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000434407.2|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F
hg19_v2_chr7_-_75368248_75368265	0.102063	SOX9	ENST00000434438.2|HIP1|ENSG00000127946.12|huntingtin interacting protein 1 	ENST00000336926.6|HIP1|ENSG00000127946.12|huntingtin interacting protein 1
hg19_v2_chr19_-_58514129_58514205	0.0993532	SOX9	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr5_-_134871639_134871660	0.0980802	SOX9	ENST00000314744.4|NEUROG1|ENSG00000181965.4|neurogenin 1
hg19_v2_chr14_-_65569186_65569243	0.0969541	SOX9	ENST00000555932.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358664.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000284165.6|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358402.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000246163.2|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556979.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000555667.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000557746.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556443.1|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr8_+_104831472_104831510	0.0960877	SOX9	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chrX_-_16888448_16888537	0.095904	SOX9	ENST00000468092.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000404022.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000380087.2|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7
hg19_v2_chr3_+_189507460_189507471	0.0946595	SOX9	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr2_-_175629164_175629224	0.0917547	SOX9	ENST00000409323.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000261007.5|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000348749.5|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle)
hg19_v2_chrX_-_85302531_85302570	0.0894157	SOX9	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr16_-_27561209_27561244	0.0877562	SOX9	ENST00000356183.4|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa 	ENST00000561623.1|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa
hg19_v2_chr1_-_243418344_243418356	0.0868294	SOX9	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr2_-_37899323_37899374	0.0868284	SOX9	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr15_-_50411412_50411437	0.0858779	SOX9	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr12_+_49761224_49761259	0.0847668	SOX9	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr11_-_79151695_79151710	0.0847134	SOX9	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr19_+_10764937_10764998	0.0843274	SOX9	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr3_+_49058444_49058618	0.0834595	SOX9	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr16_-_22385901_22385947	0.0820006	SOX9	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr3_-_185826855_185826911	0.0818162	SOX9	ENST00000306376.5|ETV5|ENSG00000244405.3|ets variant 5
hg19_v2_chr20_-_34330129_34330234	0.0806851	SOX9	ENST00000397370.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000528062.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000407261.4|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000374038.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000361162.6|RBM39|ENSG00000131051.16|RNA binding motif protein 39
hg19_v2_chr9_-_139760717_139760728	0.0729028	SOX9	ENST00000371648.4|EDF1|ENSG00000107223.8|endothelial differentiation-related factor 1
hg19_v2_chr4_+_78079450_78079563	0.0728905	SOX9	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr11_+_128563652_128563689	0.0724522	SOX9	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr1_-_19426149_19426221	0.0719845	SOX9	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr1_-_197115818_197115829	0.0718836	SOX9	ENST00000367409.4|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 	ENST00000294732.7|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
hg19_v2_chr6_+_43457317_43457360	0.0716085	SOX9	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr4_+_41614909_41614926	0.0669746	SOX9	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr19_+_45504688_45504782	0.066963	SOX9	ENST00000221452.8|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B 	ENST00000540120.1|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B 	ENST00000505236.1|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B
hg19_v2_chr11_+_120255997_120256048	0.0668964	SOX9	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr1_+_180897269_180897295	0.0667895	SOX9	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr7_-_122840015_122840040	0.0666839	SOX9	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr19_+_45394477_45394546	0.0664506	SOX9	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chr12_+_49761273_49761330	0.0662732	SOX9	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr2_-_65357225_65357267	0.0637809	SOX9	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr16_+_56970567_56970647	0.0620778	SOX9	ENST00000563911.1|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
hg19_v2_chr12_-_88974236_88974256	0.0600666	SOX9	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr5_-_43313574_43313614	0.0599911	SOX9	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr17_-_4871085_4871167	0.0586024	SOX9	ENST00000575142.1|SPAG7|ENSG00000091640.3|sperm associated antigen 7 	ENST00000206020.3|SPAG7|ENSG00000091640.3|sperm associated antigen 7
hg19_v2_chr12_-_54673871_54673925	0.0571026	SOX9	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr17_-_62308087_62308116	0.0557788	SOX9	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr7_-_99277610_99277626	0.0550696	SOX9	ENST00000343703.5|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000222982.4|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000439761.1|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000339843.2|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5
hg19_v2_chr5_-_179780312_179780387	0.0549261	SOX9	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr16_+_3019246_3019304	0.0536295	SOX9	ENST00000318782.8|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV 	ENST00000293978.8|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chr10_+_73724123_73724206	0.0517342	SOX9	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chrX_+_84499081_84499115	0.0504425	SOX9	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr5_+_178986693_178986820	0.049178	SOX9	ENST00000437570.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1 	ENST00000393438.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1
hg19_v2_chr12_+_49621658_49621709	0.0482354	SOX9	ENST00000541364.1|TUBA1C|ENSG00000167553.10|tubulin, alpha 1c
hg19_v2_chr17_-_56605341_56605363	0.0475424	SOX9	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr17_-_39041479_39041501	0.0452879	SOX9	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr10_-_120101804_120101843	0.0432854	SOX9	ENST00000369183.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A 	ENST00000369172.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A
hg19_v2_chr9_-_139760737_139760769	0.0402065	SOX9	ENST00000371649.1|EDF1|ENSG00000107223.8|endothelial differentiation-related factor 1 	ENST00000224073.1|EDF1|ENSG00000107223.8|endothelial differentiation-related factor 1
hg19_v2_chr12_+_130646999_130647019	0.0398158	SOX9	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr6_+_29691056_29691188	0.0383592	SOX9	ENST00000414333.1|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000334668.4|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000259951.7|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F
hg19_v2_chr16_+_3019552_3019559	0.0369571	SOX9	ENST00000572687.1|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chr9_+_134269439_134269506	0.0361338	SOX9	ENST00000405995.1|PRRC2B|ENSG00000130723.13|proline-rich coiled-coil 2B
hg19_v2_chr10_+_104678102_104678119	0.0345376	SOX9	ENST00000433628.2|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chrX_-_132352373_132352384	0.0331404	SOX9	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr9_-_99064386_99064410	0.0322338	SOX9	ENST00000375262.2|HSD17B3|ENSG00000130948.5|hydroxysteroid (17-beta) dehydrogenase 3
hg19_v2_chr11_+_111807863_111807937	0.0321645	SOX9	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr16_+_1832902_1833008	0.0320579	SOX9	ENST00000262302.9|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000563136.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565987.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000543305.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000568287.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2 	ENST00000565134.1|NUBP2|ENSG00000095906.12|nucleotide binding protein 2
hg19_v2_chr6_+_131571535_131571595	0.0317289	SOX9	ENST00000474850.2|AKAP7|ENSG00000118507.11|A kinase (PRKA) anchor protein 7
hg19_v2_chr10_+_99079008_99079060	0.0304571	SOX9	ENST00000371021.3|FRAT1|ENSG00000165879.7|frequently rearranged in advanced T-cell lymphomas
hg19_v2_chr17_+_46970134_46970170	0.0298404	SOX9	ENST00000503641.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) 	ENST00000514808.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr3_+_189507523_189507590	0.0298299	SOX9	ENST00000437221.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392463.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392461.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000449992.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000456148.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr5_+_140248518_140248689	0.0296854	SOX9	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr4_-_76598326_76598346	0.029574	SOX9	ENST00000503660.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr3_+_25469724_25469773	0.0294127	SOX9	ENST00000437042.2|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr10_+_49514698_49514736	0.0292358	SOX9	ENST00000432379.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8 	ENST00000429041.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8 	ENST00000374189.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8
hg19_v2_chr10_+_6244829_6244904	0.0284783	SOX9	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr2_+_30569506_30569525	0.0278965	SOX9	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chrX_+_12993336_12993363	0.0276141	SOX9	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr12_-_11036844_11036861	0.0275563	SOX9	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chr3_+_49507674_49507758	0.0268044	SOX9	ENST00000431960.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000452317.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000435508.2|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000452060.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000428779.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000419218.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000430636.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1)
hg19_v2_chr6_+_27782788_27782823	0.0243591	SOX9	ENST00000359465.4|HIST1H2BM|ENSG00000196374.5|histone cluster 1, H2bm
hg19_v2_chr9_-_99064429_99064442	0.0237801	SOX9	ENST00000375263.3|HSD17B3|ENSG00000130948.5|hydroxysteroid (17-beta) dehydrogenase 3
hg19_v2_chr17_-_74722672_74722761	0.0227033	SOX9	ENST00000397625.4|JMJD6|ENSG00000070495.10|jumonji domain containing 6 	ENST00000445478.2|JMJD6|ENSG00000070495.10|jumonji domain containing 6
hg19_v2_chr1_+_12834984_12834984	0.0219399	SOX9	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr10_-_104953009_104953061	0.021851	SOX9	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr12_-_54019755_54019804	0.0209619	SOX9	ENST00000588078.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000591834.1|RP11-793H13.10|ENSG00000267281.2|Uncharacterized protein  	ENST00000551480.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000548118.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000456903.4|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chrX_+_84499038_84499078	0.0209124	SOX9	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr6_-_135375921_135375969	0.0208143	SOX9	ENST00000367820.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000314674.3|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000524715.1|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000415177.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000367826.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae)
hg19_v2_chr8_+_61429416_61429502	0.0206941	SOX9	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr2_-_86422523_86422595	0.0203445	SOX9	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr14_-_64761078_64761128	0.0197239	SOX9	ENST00000341099.4|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000556275.1|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000542956.1|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000353772.3|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000357782.2|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000267525.6|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta)
hg19_v2_chr17_-_38210644_38210675	0.0179285	SOX9	ENST00000394128.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000394127.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000356271.3|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000535071.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580885.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000543759.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000537674.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580517.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000578161.1|MED24|ENSG00000008838.13|mediator complex subunit 24
hg19_v2_chr1_-_26232951_26232959	0.0172555	SOX9	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr7_-_107443652_107443675	0.0171404	SOX9	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr2_+_54198210_54198293	0.0165467	SOX9	ENST00000607452.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type 	ENST00000422521.2|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr17_+_46970178_46970180	0.0156773	SOX9	ENST00000393366.2|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) 	ENST00000506855.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr6_-_79944336_79944440	0.015539	SOX9	ENST00000344726.5|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3 	ENST00000275036.7|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3
hg19_v2_chr19_-_44100275_44100302	0.015481	SOX9	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr6_+_37787262_37787291	0.0147926	SOX9	ENST00000287218.4|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr19_-_15490568_15490606	0.0142497	SOX9	ENST00000269701.2|AKAP8|ENSG00000105127.4|A kinase (PRKA) anchor protein 8
hg19_v2_chr5_+_140602904_140603078	0.0138522	SOX9	ENST00000515856.2|PCDHB14|ENSG00000120327.4|protocadherin beta 14 	ENST00000239449.4|PCDHB14|ENSG00000120327.4|protocadherin beta 14
hg19_v2_chr1_-_217311090_217311097	0.0137781	SOX9	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr19_+_36208877_36208921	0.0120759	SOX9	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr19_+_44100632_44100683	0.0106848	SOX9	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr12_-_81763184_81763202	0.00975719	SOX9	ENST00000548670.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000541570.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000553058.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr7_+_29519486_29519549	0.00950838	SOX9	ENST00000409041.4|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr16_-_75590114_75590184	0.00768635	SOX9	ENST00000568377.1|TMEM231|ENSG00000205084.6|transmembrane protein 231 	ENST00000565067.1|TMEM231|ENSG00000205084.6|transmembrane protein 231 	ENST00000258173.6|TMEM231|ENSG00000205084.6|transmembrane protein 231
hg19_v2_chr19_+_8455200_8455301	0.0072615	SOX9	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr13_-_31040060_31040102	0.00586097	SOX9	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr10_+_22605304_22605372	0.00518419	SOX9	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chrX_-_153599578_153599656	0.00305005	SOX9	ENST00000360319.4|FLNA|ENSG00000196924.10|filamin A, alpha 	ENST00000344736.4|FLNA|ENSG00000196924.10|filamin A, alpha
hg19_v2_chr5_-_60240858_60240905	0.00242216	SOX9	ENST00000426742.2|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000265038.5|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000543101.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000439176.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8
hg19_v2_chr10_+_104678032_104678094	0.000812594	SOX9	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
