hg19_v2_chr1_-_92351769_92351787	0.760541	UCACAUU	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr10_+_11206925_11206993	0.54549	UCACAUU	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr8_-_122653630_122653661	0.533014	UCACAUU	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr9_+_100263912_100263988	0.520866	UCACAUU	ENST00000259365.4|TMOD1|ENSG00000136842.9|tropomodulin 1
hg19_v2_chr1_-_32801825_32801980	0.503964	UCACAUU	ENST00000329421.7|MARCKSL1|ENSG00000175130.6|MARCKS-like 1
hg19_v2_chr15_-_58358607_58358621	0.472332	UCACAUU	ENST00000249750.4|ALDH1A2|ENSG00000128918.10|aldehyde dehydrogenase 1 family, member A2
hg19_v2_chr3_-_87040233_87040257	0.463361	UCACAUU	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr21_-_28338732_28338832	0.455467	UCACAUU	ENST00000284987.5|ADAMTS5|ENSG00000154736.5|ADAM metallopeptidase with thrombospondin type 1 motif, 5
hg19_v2_chr16_-_89007491_89007608	0.438767	UCACAUU	ENST00000327483.5|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000564416.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr9_-_16870704_16870841	0.416091	UCACAUU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr15_+_33010175_33010211	0.415732	UCACAUU	ENST00000300177.4|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560677.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560830.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist
hg19_v2_chr4_+_123747834_123747863	0.38498	UCACAUU	ENST00000264498.3|FGF2|ENSG00000138685.8|fibroblast growth factor 2 (basic)
hg19_v2_chr3_+_69812877_69812962	0.365245	UCACAUU	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr5_-_131826457_131826514	0.353789	UCACAUU	ENST00000437654.1|IRF1|ENSG00000125347.9|interferon regulatory factor 1 	ENST00000245414.4|IRF1|ENSG00000125347.9|interferon regulatory factor 1
hg19_v2_chr5_+_112312416_112312440	0.345686	UCACAUU	ENST00000389063.2|DCP2|ENSG00000172795.11|decapping mRNA 2
hg19_v2_chr19_-_46974741_46974826	0.338404	UCACAUU	ENST00000313683.10|PNMAL1|ENSG00000182013.13|paraneoplastic Ma antigen family-like 1 	ENST00000602246.1|PNMAL1|ENSG00000182013.13|paraneoplastic Ma antigen family-like 1
hg19_v2_chr4_-_140098339_140098392	0.317739	UCACAUU	ENST00000394235.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr11_+_94277017_94277097	0.300423	UCACAUU	ENST00000358752.2|FUT4|ENSG00000196371.2|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)
hg19_v2_chr4_-_174256276_174256303	0.300145	UCACAUU	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr10_+_31608054_31608156	0.292497	UCACAUU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr5_+_162864575_162864620	0.289418	UCACAUU	ENST00000512163.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000393929.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000340828.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511683.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510097.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511490.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510664.1|CCNG1|ENSG00000113328.14|cyclin G1
hg19_v2_chr5_+_82767284_82767310	0.285824	UCACAUU	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr15_-_48937982_48938046	0.277973	UCACAUU	ENST00000316623.5|FBN1|ENSG00000166147.9|fibrillin 1
hg19_v2_chr15_-_37390482_37390572	0.275912	UCACAUU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr2_-_200322723_200322819	0.259515	UCACAUU	ENST00000417098.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr9_+_101569944_101569981	0.258054	UCACAUU	ENST00000375011.3|GALNT12|ENSG00000119514.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
hg19_v2_chr6_+_119215308_119215391	0.248228	UCACAUU	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr5_+_118407053_118407239	0.244475	UCACAUU	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
hg19_v2_chr3_-_138665969_138665993	0.24301	UCACAUU	ENST00000330315.3|FOXL2|ENSG00000183770.5|forkhead box L2
hg19_v2_chr16_-_19896220_19896239	0.237888	UCACAUU	ENST00000562469.1|GPRC5B|ENSG00000167191.7|G protein-coupled receptor, family C, group 5, member B 	ENST00000300571.2|GPRC5B|ENSG00000167191.7|G protein-coupled receptor, family C, group 5, member B
hg19_v2_chr1_+_26798955_26799010	0.236067	UCACAUU	ENST00000361427.5|HMGN2|ENSG00000198830.6|high mobility group nucleosomal binding domain 2
hg19_v2_chr8_+_77593448_77593471	0.23306	UCACAUU	ENST00000521891.2|ZFHX4|ENSG00000091656.11|zinc finger homeobox 4
hg19_v2_chr6_-_39197226_39197258	0.231092	UCACAUU	ENST00000359534.3|KCNK5|ENSG00000164626.8|potassium channel, subfamily K, member 5
hg19_v2_chr1_-_193155729_193155784	0.227987	UCACAUU	ENST00000367434.4|B3GALT2|ENSG00000162630.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
hg19_v2_chr6_-_82462425_82462491	0.215012	UCACAUU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr10_+_89622870_89622870	0.202129	UCACAUU	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr12_+_104682496_104682651	0.20028	UCACAUU	ENST00000378070.4|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr1_+_78470530_78470551	0.195636	UCACAUU	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr9_+_110045537_110045572	0.193007	UCACAUU	ENST00000358015.3|RAD23B|ENSG00000119318.8|RAD23 homolog B (S. cerevisiae)
hg19_v2_chr17_-_40428359_40428462	0.192639	UCACAUU	ENST00000293328.3|STAT5B|ENSG00000173757.5|signal transducer and activator of transcription 5B
hg19_v2_chr2_+_24714729_24714927	0.190155	UCACAUU	ENST00000406961.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1 	ENST00000405141.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1
hg19_v2_chr4_+_154387480_154387536	0.186995	UCACAUU	ENST00000409663.3|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000440693.1|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000409959.3|KIAA0922|ENSG00000121210.11|KIAA0922
hg19_v2_chr9_+_4490394_4490446	0.185771	UCACAUU	ENST00000262352.3|SLC1A1|ENSG00000106688.7|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
hg19_v2_chr2_-_101034070_101034147	0.183876	UCACAUU	ENST00000264249.3|CHST10|ENSG00000115526.6|carbohydrate sulfotransferase 10
hg19_v2_chr7_+_114562172_114562243	0.176986	UCACAUU	ENST00000393486.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing 	ENST00000257724.3|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing
hg19_v2_chr5_+_71403061_71403169	0.17335	UCACAUU	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr5_-_136834982_136835037	0.172429	UCACAUU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr22_+_21213259_21213271	0.171818	UCACAUU	ENST00000215730.7|SNAP29|ENSG00000099940.7|synaptosomal-associated protein, 29kDa
hg19_v2_chr10_-_735553_735683	0.171262	UCACAUU	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr9_+_32384617_32384709	0.170667	UCACAUU	ENST00000379923.1|ACO1|ENSG00000122729.14|aconitase 1, soluble 	ENST00000309951.6|ACO1|ENSG00000122729.14|aconitase 1, soluble 	ENST00000541043.1|ACO1|ENSG00000122729.14|aconitase 1, soluble
hg19_v2_chr15_+_80696666_80696700	0.168415	UCACAUU	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chrX_+_46433193_46433237	0.167706	UCACAUU	ENST00000276055.3|CHST7|ENSG00000147119.3|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7
hg19_v2_chr6_-_137113604_137113666	0.16396	UCACAUU	ENST00000359015.4|MAP3K5|ENSG00000197442.8|mitogen-activated protein kinase kinase kinase 5
hg19_v2_chr15_-_61521495_61521518	0.163583	UCACAUU	ENST00000335670.6|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr8_-_93115445_93115462	0.163127	UCACAUU	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr12_-_10766184_10766222	0.160535	UCACAUU	ENST00000539554.1|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000381881.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000320756.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila)
hg19_v2_chr10_+_72164135_72164135	0.157226	UCACAUU	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr18_-_31803435_31803515	0.154251	UCACAUU	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr11_-_66115032_66115163	0.153367	UCACAUU	ENST00000311181.4|B3GNT1|ENSG00000174684.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
hg19_v2_chr10_-_65225722_65225755	0.15285	UCACAUU	ENST00000399251.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr14_+_79745746_79745762	0.151036	UCACAUU	ENST00000281127.7|NRXN3|ENSG00000021645.13|neurexin 3
hg19_v2_chr8_-_8751068_8751158	0.147926	UCACAUU	ENST00000276282.6|MFHAS1|ENSG00000147324.6|malignant fibrous histiocytoma amplified sequence 1
hg19_v2_chr2_-_228028829_228028858	0.140574	UCACAUU	ENST00000396625.3|COL4A4|ENSG00000081052.10|collagen, type IV, alpha 4 	ENST00000329662.7|COL4A4|ENSG00000081052.10|collagen, type IV, alpha 4
hg19_v2_chrX_-_129244655_129244697	0.136903	UCACAUU	ENST00000335997.7|ELF4|ENSG00000102034.12|E74-like factor 4 (ets domain transcription factor)
hg19_v2_chr11_+_34073195_34073266	0.135945	UCACAUU	ENST00000341394.4|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr1_+_112162381_112162431	0.134327	UCACAUU	ENST00000433097.1|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000369709.3|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000436150.2|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family
hg19_v2_chr4_+_129730779_129730826	0.134274	UCACAUU	ENST00000226319.6|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chr11_-_86666427_86666450	0.134099	UCACAUU	ENST00000531380.1|FZD4|ENSG00000174804.3|frizzled family receptor 4
hg19_v2_chr12_-_100536608_100536667	0.12982	UCACAUU	ENST00000356828.3|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like 	ENST00000279907.7|UHRF1BP1L|ENSG00000111647.8|UHRF1 binding protein 1-like
hg19_v2_chr1_-_225615599_225615802	0.129613	UCACAUU	ENST00000421383.1|LBR|ENSG00000143815.10|lamin B receptor 	ENST00000272163.4|LBR|ENSG00000143815.10|lamin B receptor
hg19_v2_chr8_-_60031762_60031803	0.129047	UCACAUU	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr10_-_118502070_118502085	0.127531	UCACAUU	ENST00000369209.3|HSPA12A|ENSG00000165868.8|heat shock 70kDa protein 12A
hg19_v2_chr17_+_58677539_58677610	0.126552	UCACAUU	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr3_-_182698381_182698431	0.125934	UCACAUU	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr10_-_101989315_101989376	0.125469	UCACAUU	ENST00000370397.7|CHUK|ENSG00000213341.6|conserved helix-loop-helix ubiquitous kinase
hg19_v2_chr5_+_32788945_32788945	0.122989	UCACAUU	ENST00000326958.1|AC026703.1|ENSG00000181495.1|AC026703.1
hg19_v2_chr2_-_86564776_86564813	0.121293	UCACAUU	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr6_+_110501344_110501412	0.119659	UCACAUU	ENST00000368932.1|CDC40|ENSG00000168438.10|cell division cycle 40
hg19_v2_chr2_-_47168906_47168994	0.117467	UCACAUU	ENST00000444761.2|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2 	ENST00000409147.1|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2
hg19_v2_chr6_-_116575226_116575278	0.115869	UCACAUU	ENST00000420283.1|TSPYL4|ENSG00000187189.9|TSPY-like 4
hg19_v2_chr12_+_74931551_74931656	0.111715	UCACAUU	ENST00000519948.2|ATXN7L3B|ENSG00000253719.2|ataxin 7-like 3B
hg19_v2_chr12_+_111843749_111843763	0.111547	UCACAUU	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr12_+_72233487_72233563	0.110615	UCACAUU	ENST00000482439.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000550746.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000491063.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000319106.8|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000485960.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000393309.3|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15
hg19_v2_chr12_+_122242597_122242638	0.109462	UCACAUU	ENST00000267197.5|SETD1B|ENSG00000139718.6|SET domain containing 1B
hg19_v2_chr2_+_5832799_5832799	0.109027	UCACAUU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr17_+_37026106_37026123	0.108269	UCACAUU	ENST00000318008.6|LASP1|ENSG00000002834.13|LIM and SH3 protein 1
hg19_v2_chr5_+_32711419_32711540	0.108223	UCACAUU	ENST00000265074.8|NPR3|ENSG00000113389.11|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
hg19_v2_chr3_+_147127142_147127171	0.10661	UCACAUU	ENST00000282928.4|ZIC1|ENSG00000152977.5|Zic family member 1
hg19_v2_chr2_-_172017343_172017391	0.106529	UCACAUU	ENST00000431350.2|TLK1|ENSG00000198586.9|tousled-like kinase 1 	ENST00000360843.3|TLK1|ENSG00000198586.9|tousled-like kinase 1
hg19_v2_chr20_+_37434329_37434371	0.105293	UCACAUU	ENST00000299824.1|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B 	ENST00000373331.2|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B
hg19_v2_chr8_-_103876965_103877012	0.104538	UCACAUU	ENST00000337198.5|AZIN1|ENSG00000155096.9|antizyme inhibitor 1
hg19_v2_chrX_-_124097620_124097666	0.103758	UCACAUU	ENST00000371130.3|TENM1|ENSG00000009694.9|teneurin transmembrane protein 1 	ENST00000422452.2|TENM1|ENSG00000009694.9|teneurin transmembrane protein 1
hg19_v2_chr1_+_24286287_24286326	0.101857	UCACAUU	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr5_-_132948216_132948255	0.0983012	UCACAUU	ENST00000265342.7|FSTL4|ENSG00000053108.12|follistatin-like 4
hg19_v2_chr17_+_25799008_25799036	0.0982452	UCACAUU	ENST00000583370.1|KSR1|ENSG00000141068.9|kinase suppressor of ras 1 	ENST00000398988.3|KSR1|ENSG00000141068.9|kinase suppressor of ras 1 	ENST00000268763.6|KSR1|ENSG00000141068.9|kinase suppressor of ras 1
hg19_v2_chr6_-_34360413_34360453	0.0980101	UCACAUU	ENST00000607016.1|NUDT3|ENSG00000272325.1|nudix (nucleoside diphosphate linked moiety X)-type motif 3
hg19_v2_chr4_-_53525406_53525502	0.0947629	UCACAUU	ENST00000451218.2|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46 	ENST00000441222.3|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr5_-_40755987_40756077	0.0930539	UCACAUU	ENST00000337702.4|TTC33|ENSG00000113638.8|tetratricopeptide repeat domain 33
hg19_v2_chr1_+_118148556_118148681	0.0925172	UCACAUU	ENST00000369448.3|FAM46C|ENSG00000183508.4|family with sequence similarity 46, member C
hg19_v2_chr6_+_106546808_106546833	0.0916191	UCACAUU	ENST00000369089.3|PRDM1|ENSG00000057657.10|PR domain containing 1, with ZNF domain
hg19_v2_chr4_+_144257915_144258009	0.0901891	UCACAUU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr4_-_129208940_129208976	0.0892409	UCACAUU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr1_-_240775447_240775462	0.0885404	UCACAUU	ENST00000318160.4|GREM2|ENSG00000180875.4|gremlin 2, DAN family BMP antagonist
hg19_v2_chr20_-_48099182_48099214	0.0881314	UCACAUU	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr9_+_108456800_108456849	0.0857934	UCACAUU	ENST00000434214.1|TMEM38B|ENSG00000095209.7|transmembrane protein 38B 	ENST00000374692.3|TMEM38B|ENSG00000095209.7|transmembrane protein 38B
hg19_v2_chr17_+_34948228_34948357	0.085125	UCACAUU	ENST00000251312.5|DHRS11|ENSG00000108272.9|dehydrogenase/reductase (SDR family) member 11 	ENST00000590554.1|DHRS11|ENSG00000108272.9|dehydrogenase/reductase (SDR family) member 11
hg19_v2_chr8_+_20054878_20054950	0.0850842	UCACAUU	ENST00000276390.2|ATP6V1B2|ENSG00000147416.6|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 	ENST00000519667.1|ATP6V1B2|ENSG00000147416.6|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2
hg19_v2_chr1_-_245027833_245027855	0.0845234	UCACAUU	ENST00000444376.2|HNRNPU|ENSG00000153187.12|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
hg19_v2_chr1_+_66797687_66797884	0.0828586	UCACAUU	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr3_+_155588300_155588369	0.0824145	UCACAUU	ENST00000496455.2|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr11_-_32452357_32452363	0.0823973	UCACAUU	ENST00000379079.2|WT1|ENSG00000184937.8|Wilms tumor 1 	ENST00000530998.1|WT1|ENSG00000184937.8|Wilms tumor 1
hg19_v2_chr17_+_45608430_45608490	0.082302	UCACAUU	ENST00000322157.4|NPEPPS|ENSG00000141279.11|aminopeptidase puromycin sensitive
hg19_v2_chr4_+_72204755_72204778	0.0821963	UCACAUU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr11_-_9286921_9286937	0.0821163	UCACAUU	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr2_-_70475730_70475798	0.0819771	UCACAUU	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr4_+_184020398_184020463	0.0816706	UCACAUU	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr5_+_65222299_65222361	0.0811752	UCACAUU	ENST00000284037.5|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr9_+_100395891_100395922	0.080584	UCACAUU	ENST00000375147.3|NCBP1|ENSG00000136937.8|nuclear cap binding protein subunit 1, 80kDa
hg19_v2_chr1_-_51984908_51984952	0.0802977	UCACAUU	ENST00000371730.2|EPS15|ENSG00000085832.12|epidermal growth factor receptor pathway substrate 15
hg19_v2_chr12_-_76953284_76953341	0.0798309	UCACAUU	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr11_+_35684288_35684353	0.0796818	UCACAUU	ENST00000299413.5|TRIM44|ENSG00000166326.5|tripartite motif containing 44
hg19_v2_chrX_-_110513703_110513751	0.0795217	UCACAUU	ENST00000324068.1|CAPN6|ENSG00000077274.7|calpain 6
hg19_v2_chr11_-_76091986_76092038	0.0780897	UCACAUU	ENST00000260045.3|PRKRIR|ENSG00000137492.3|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
hg19_v2_chr7_-_120498357_120498456	0.07681	UCACAUU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr1_+_198126093_198126207	0.075718	UCACAUU	ENST00000367385.4|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000442588.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000538004.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7
hg19_v2_chr17_-_10421853_10421866	0.0738566	UCACAUU	ENST00000226207.5|MYH1|ENSG00000109061.9|myosin, heavy chain 1, skeletal muscle, adult
hg19_v2_chr4_+_186064395_186064426	0.073755	UCACAUU	ENST00000281456.6|SLC25A4|ENSG00000151729.6|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4
hg19_v2_chr8_-_28243934_28243993	0.0735171	UCACAUU	ENST00000521185.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000520290.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000344423.5|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr7_-_37956409_37956517	0.0733841	UCACAUU	ENST00000436072.2|SFRP4|ENSG00000106483.7|secreted frizzled-related protein 4
hg19_v2_chr10_+_88516396_88516426	0.071669	UCACAUU	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr10_+_93558069_93558154	0.070036	UCACAUU	ENST00000371627.4|TNKS2|ENSG00000107854.5|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
hg19_v2_chr2_+_152214098_152214115	0.0699503	UCACAUU	ENST00000243347.3|TNFAIP6|ENSG00000123610.3|tumor necrosis factor, alpha-induced protein 6
hg19_v2_chr1_+_36396677_36396749	0.0699232	UCACAUU	ENST00000373191.4|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3 	ENST00000397828.2|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr1_-_205719295_205719404	0.0697502	UCACAUU	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr8_+_61591337_61591393	0.0689005	UCACAUU	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr14_-_57735528_57735726	0.0685016	UCACAUU	ENST00000340918.7|EXOC5|ENSG00000070367.11|exocyst complex component 5 	ENST00000413566.2|EXOC5|ENSG00000070367.11|exocyst complex component 5
hg19_v2_chr9_+_129567282_129567353	0.068399	UCACAUU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr5_+_149887672_149887698	0.0682064	UCACAUU	ENST00000261797.6|NDST1|ENSG00000070614.10|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
hg19_v2_chr1_+_164528866_164528877	0.0681855	UCACAUU	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr3_-_47823298_47823423	0.0665739	UCACAUU	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr6_+_96463840_96463892	0.0665339	UCACAUU	ENST00000302103.5|FUT9|ENSG00000172461.6|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)
hg19_v2_chr21_+_44394620_44394737	0.0661082	UCACAUU	ENST00000291547.5|PKNOX1|ENSG00000160199.10|PBX/knotted 1 homeobox 1
hg19_v2_chr7_+_99036543_99036696	0.0660674	UCACAUU	ENST00000436336.2|CPSF4|ENSG00000160917.10|cleavage and polyadenylation specific factor 4, 30kDa 	ENST00000451876.1|CPSF4|ENSG00000160917.10|cleavage and polyadenylation specific factor 4, 30kDa 	ENST00000292476.5|CPSF4|ENSG00000160917.10|cleavage and polyadenylation specific factor 4, 30kDa
hg19_v2_chr5_+_127419449_127419540	0.0651399	UCACAUU	ENST00000262461.2|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2 	ENST00000343225.4|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2
hg19_v2_chr3_-_171178157_171178225	0.064989	UCACAUU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr7_-_87505658_87505717	0.0643938	UCACAUU	ENST00000341119.5|SLC25A40|ENSG00000075303.8|solute carrier family 25, member 40
hg19_v2_chr20_+_39657454_39657470	0.0629977	UCACAUU	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr3_-_88108192_88108203	0.0624209	UCACAUU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr2_+_159313452_159313624	0.0615544	UCACAUU	ENST00000389757.3|PKP4|ENSG00000144283.17|plakophilin 4 	ENST00000389759.3|PKP4|ENSG00000144283.17|plakophilin 4
hg19_v2_chr1_-_114355083_114355123	0.0611867	UCACAUU	ENST00000261441.5|RSBN1|ENSG00000081019.9|round spermatid basic protein 1
hg19_v2_chr4_+_79697495_79697538	0.0608503	UCACAUU	ENST00000502871.1|BMP2K|ENSG00000138756.13|BMP2 inducible kinase 	ENST00000335016.5|BMP2K|ENSG00000138756.13|BMP2 inducible kinase
hg19_v2_chr21_+_47401650_47401692	0.0606534	UCACAUU	ENST00000361866.3|COL6A1|ENSG00000142156.10|collagen, type VI, alpha 1
hg19_v2_chr7_-_123197733_123197890	0.0599528	UCACAUU	ENST00000470123.1|NDUFA5|ENSG00000128609.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 	ENST00000471770.1|NDUFA5|ENSG00000128609.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
hg19_v2_chr5_+_126112794_126112928	0.0595944	UCACAUU	ENST00000261366.5|LMNB1|ENSG00000113368.7|lamin B1 	ENST00000395354.1|LMNB1|ENSG00000113368.7|lamin B1
hg19_v2_chr1_-_231560790_231560790	0.0595619	UCACAUU	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr13_+_98605902_98605968	0.0590606	UCACAUU	ENST00000460070.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000481455.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000261574.5|IPO5|ENSG00000065150.14|importin 5 	ENST00000493281.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000463157.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000471898.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000489058.1|IPO5|ENSG00000065150.14|importin 5 	ENST00000481689.1|IPO5|ENSG00000065150.14|importin 5
hg19_v2_chrX_+_70316005_70316047	0.0589832	UCACAUU	ENST00000374259.3|FOXO4|ENSG00000184481.12|forkhead box O4
hg19_v2_chr1_-_24194771_24194851	0.05755	UCACAUU	ENST00000374479.3|FUCA1|ENSG00000179163.11|fucosidase, alpha-L- 1, tissue
hg19_v2_chr4_-_76439596_76439643	0.0571035	UCACAUU	ENST00000451788.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 	ENST00000512706.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr1_-_212004090_212004168	0.0569703	UCACAUU	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr8_-_94753229_94753263	0.0560895	UCACAUU	ENST00000518597.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B 	ENST00000399300.2|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B 	ENST00000517700.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr4_-_13546632_13546674	0.0551628	UCACAUU	ENST00000382438.5|NKX3-2|ENSG00000109705.7|NK3 homeobox 2
hg19_v2_chr7_+_94139105_94139197	0.0550288	UCACAUU	ENST00000297273.4|CASD1|ENSG00000127995.12|CAS1 domain containing 1
hg19_v2_chr8_-_57123815_57123867	0.0549536	UCACAUU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr9_-_36400213_36400296	0.0548657	UCACAUU	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr18_+_32558208_32558340	0.0548279	UCACAUU	ENST00000436190.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr14_-_61116168_61116180	0.0543692	UCACAUU	ENST00000247182.6|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr21_-_47706205_47706223	0.0542705	UCACAUU	ENST00000397708.1|MCM3AP|ENSG00000160294.6|minichromosome maintenance complex component 3 associated protein
hg19_v2_chr7_+_27779714_27779819	0.0541518	UCACAUU	ENST00000265393.6|TAX1BP1|ENSG00000106052.9|Tax1 (human T-cell leukemia virus type I) binding protein 1 	ENST00000409980.1|TAX1BP1|ENSG00000106052.9|Tax1 (human T-cell leukemia virus type I) binding protein 1 	ENST00000433216.2|TAX1BP1|ENSG00000106052.9|Tax1 (human T-cell leukemia virus type I) binding protein 1 	ENST00000396319.2|TAX1BP1|ENSG00000106052.9|Tax1 (human T-cell leukemia virus type I) binding protein 1
hg19_v2_chr4_-_16900217_16900230	0.0541004	UCACAUU	ENST00000441778.2|LDB2|ENSG00000169744.8|LIM domain binding 2
hg19_v2_chr5_+_10353780_10353890	0.0536601	UCACAUU	ENST00000449913.2|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000503788.1|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000274140.5|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase
hg19_v2_chr17_-_46671323_46671323	0.0525781	UCACAUU	ENST00000239151.5|HOXB5|ENSG00000120075.5|homeobox B5
hg19_v2_chr12_+_94542459_94542513	0.0525567	UCACAUU	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr11_+_47291193_47291267	0.0523963	UCACAUU	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr3_+_173116225_173116242	0.0522051	UCACAUU	ENST00000457714.1|NLGN1|ENSG00000169760.13|neuroligin 1
hg19_v2_chr9_-_127905736_127905815	0.0521609	UCACAUU	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chrX_-_64196307_64196338	0.0514997	UCACAUU	ENST00000545618.1|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr15_+_64443905_64443943	0.0511595	UCACAUU	ENST00000325881.4|SNX22|ENSG00000157734.9|sorting nexin 22
hg19_v2_chr10_-_30348439_30348531	0.0508108	UCACAUU	ENST00000375377.1|KIAA1462|ENSG00000165757.8|KIAA1462
hg19_v2_chr3_+_88188254_88188254	0.0506911	UCACAUU	ENST00000309495.5|ZNF654|ENSG00000175105.5|zinc finger protein 654
hg19_v2_chr4_+_170541660_170541677	0.0497813	UCACAUU	ENST00000513761.1|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3 	ENST00000347613.4|CLCN3|ENSG00000109572.9|chloride channel, voltage-sensitive 3
hg19_v2_chr17_-_65241281_65241326	0.049544	UCACAUU	ENST00000358691.5|HELZ|ENSG00000198265.7|helicase with zinc finger 	ENST00000580168.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr11_+_74660278_74660334	0.0495011	UCACAUU	ENST00000263672.6|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae) 	ENST00000530257.1|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae) 	ENST00000526361.1|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae) 	ENST00000532972.1|SPCS2|ENSG00000118363.7|signal peptidase complex subunit 2 homolog (S. cerevisiae)
hg19_v2_chr3_+_38495333_38495422	0.0489273	UCACAUU	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr6_-_16761678_16761721	0.0471768	UCACAUU	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr17_-_58603568_58603610	0.0471069	UCACAUU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr17_-_10452929_10452946	0.0465375	UCACAUU	ENST00000532183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000397183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000420805.1|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult
hg19_v2_chr17_-_33814851_33814890	0.0456043	UCACAUU	ENST00000449046.1|SLFN12L|ENSG00000205045.4|schlafen family member 12-like 	ENST00000260908.7|SLFN12L|ENSG00000205045.4|schlafen family member 12-like
hg19_v2_chr5_+_133984462_133984514	0.0449833	UCACAUU	ENST00000398844.2|SEC24A|ENSG00000113615.8|SEC24 family member A 	ENST00000322887.4|SEC24A|ENSG00000113615.8|SEC24 family member A
hg19_v2_chr16_-_75467318_75467408	0.0448679	UCACAUU	ENST00000283882.3|CFDP1|ENSG00000153774.4|craniofacial development protein 1
hg19_v2_chr7_+_89975979_89976052	0.0445671	UCACAUU	ENST00000257659.8|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000222511.6|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000417207.1|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative)
hg19_v2_chr10_+_112836779_112836797	0.0441741	UCACAUU	ENST00000280155.2|ADRA2A|ENSG00000150594.5|adrenoceptor alpha 2A
hg19_v2_chr7_-_112430647_112430776	0.0425944	UCACAUU	ENST00000312814.6|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr9_+_37485932_37485990	0.0425272	UCACAUU	ENST00000377798.4|POLR1E|ENSG00000137054.11|polymerase (RNA) I polypeptide E, 53kDa 	ENST00000442009.2|POLR1E|ENSG00000137054.11|polymerase (RNA) I polypeptide E, 53kDa
hg19_v2_chr12_-_120554534_120554585	0.0424615	UCACAUU	ENST00000538903.1|RAB35|ENSG00000111737.7|RAB35, member RAS oncogene family 	ENST00000534951.1|RAB35|ENSG00000111737.7|RAB35, member RAS oncogene family
hg19_v2_chr2_+_26915584_26915634	0.0416854	UCACAUU	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr1_-_150669500_150669602	0.0416667	UCACAUU	ENST00000271732.3|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chr16_+_58497567_58497586	0.0413934	UCACAUU	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr8_+_37594130_37594169	0.041221	UCACAUU	ENST00000518526.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000523887.1|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2 	ENST00000276461.5|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2
hg19_v2_chr21_-_15755446_15755508	0.0411639	UCACAUU	ENST00000544452.1|HSPA13|ENSG00000155304.4|heat shock protein 70kDa family, member 13 	ENST00000285667.3|HSPA13|ENSG00000155304.4|heat shock protein 70kDa family, member 13
hg19_v2_chr1_-_89531041_89531050	0.0408743	UCACAUU	ENST00000370473.4|GBP1|ENSG00000117228.9|guanylate binding protein 1, interferon-inducible
hg19_v2_chr19_-_50528584_50528670	0.04021	UCACAUU	ENST00000594092.1|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000443401.2|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000594948.1|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000377011.2|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000593919.1|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000601324.1|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000316763.3|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000601341.1|VRK3|ENSG00000105053.6|vaccinia related kinase 3 	ENST00000600259.1|VRK3|ENSG00000105053.6|vaccinia related kinase 3
hg19_v2_chr11_+_32112431_32112454	0.0400899	UCACAUU	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr2_+_176981307_176981307	0.0398526	UCACAUU	ENST00000249501.4|HOXD10|ENSG00000128710.5|homeobox D10
hg19_v2_chr6_-_24721054_24721074	0.0394833	UCACAUU	ENST00000378119.4|C6orf62|ENSG00000112308.8|chromosome 6 open reading frame 62
hg19_v2_chr17_-_3749515_3749551	0.0393129	UCACAUU	ENST00000158149.3|C17orf85|ENSG00000074356.12|chromosome 17 open reading frame 85 	ENST00000389005.4|C17orf85|ENSG00000074356.12|chromosome 17 open reading frame 85
hg19_v2_chr17_+_1958388_1958404	0.038911	UCACAUU	ENST00000399849.3|HIC1|ENSG00000177374.8|hypermethylated in cancer 1
hg19_v2_chr13_+_73302047_73302073	0.0386152	UCACAUU	ENST00000377814.2|BORA|ENSG00000136122.11|bora, aurora kinase A activator 	ENST00000377815.3|BORA|ENSG00000136122.11|bora, aurora kinase A activator 	ENST00000390667.5|BORA|ENSG00000136122.11|bora, aurora kinase A activator
hg19_v2_chr11_-_85780086_85780161	0.038574	UCACAUU	ENST00000532317.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000528256.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000526033.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein
hg19_v2_chr1_+_179923873_179923954	0.0382253	UCACAUU	ENST00000367607.3|CEP350|ENSG00000135837.11|centrosomal protein 350kDa 	ENST00000491495.2|CEP350|ENSG00000135837.11|centrosomal protein 350kDa
hg19_v2_chr19_-_55881741_55881837	0.0370794	UCACAUU	ENST00000264563.2|IL11|ENSG00000095752.2|interleukin 11 	ENST00000590625.1|IL11|ENSG00000095752.2|interleukin 11 	ENST00000585513.1|IL11|ENSG00000095752.2|interleukin 11
hg19_v2_chr6_+_4021554_4021656	0.0370589	UCACAUU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr14_-_68141535_68141574	0.0366389	UCACAUU	ENST00000554659.1|VTI1B|ENSG00000100568.6|vesicle transport through interaction with t-SNAREs 1B
hg19_v2_chr1_-_46598284_46598356	0.0363455	UCACAUU	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr11_+_14665263_14665274	0.0361455	UCACAUU	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr11_+_68080077_68080127	0.0357117	UCACAUU	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr10_-_101491828_101491900	0.0351682	UCACAUU	ENST00000370483.5|COX15|ENSG00000014919.8|cytochrome c oxidase assembly homolog 15 (yeast) 	ENST00000016171.5|COX15|ENSG00000014919.8|cytochrome c oxidase assembly homolog 15 (yeast)
hg19_v2_chr9_+_102668915_102669024	0.035103	UCACAUU	ENST00000259400.6|STX17|ENSG00000136874.6|syntaxin 17 	ENST00000531035.1|STX17|ENSG00000136874.6|syntaxin 17 	ENST00000525640.1|STX17|ENSG00000136874.6|syntaxin 17 	ENST00000534052.1|STX17|ENSG00000136874.6|syntaxin 17 	ENST00000526607.1|STX17|ENSG00000136874.6|syntaxin 17
hg19_v2_chr12_-_88974236_88974256	0.0343494	UCACAUU	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr1_+_33283043_33283198	0.0336629	UCACAUU	ENST00000373476.1|S100PBP|ENSG00000116497.13|S100P binding protein 	ENST00000373475.5|S100PBP|ENSG00000116497.13|S100P binding protein 	ENST00000529027.1|S100PBP|ENSG00000116497.13|S100P binding protein 	ENST00000398243.3|S100PBP|ENSG00000116497.13|S100P binding protein
hg19_v2_chr8_-_117886955_117887105	0.0336434	UCACAUU	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr4_-_174320687_174320687	0.0335982	UCACAUU	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr2_-_45236540_45236577	0.033486	UCACAUU	ENST00000303077.6|SIX2|ENSG00000170577.7|SIX homeobox 2
hg19_v2_chr6_+_117996621_117996665	0.0334602	UCACAUU	ENST00000368494.3|NUS1|ENSG00000153989.7|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
hg19_v2_chr2_+_42396472_42396563	0.0333476	UCACAUU	ENST00000318522.5|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4 	ENST00000402711.2|EML4|ENSG00000143924.14|echinoderm microtubule associated protein like 4
hg19_v2_chr10_+_60094735_60094749	0.0333424	UCACAUU	ENST00000373910.4|UBE2D1|ENSG00000072401.10|ubiquitin-conjugating enzyme E2D 1
hg19_v2_chr6_-_52926539_52926668	0.0331366	UCACAUU	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr13_+_20532807_20532841	0.0330166	UCACAUU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr9_+_34990219_34990312	0.032904	UCACAUU	ENST00000541010.1|DNAJB5|ENSG00000137094.10|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENST00000454002.2|DNAJB5|ENSG00000137094.10|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENST00000545841.1|DNAJB5|ENSG00000137094.10|DnaJ (Hsp40) homolog, subfamily B, member 5
hg19_v2_chr1_-_84464780_84464862	0.0327476	UCACAUU	ENST00000260505.8|TTLL7|ENSG00000137941.12|tubulin tyrosine ligase-like family, member 7
hg19_v2_chr11_+_133938820_133938914	0.0326561	UCACAUU	ENST00000299106.4|JAM3|ENSG00000166086.8|junctional adhesion molecule 3 	ENST00000529443.2|JAM3|ENSG00000166086.8|junctional adhesion molecule 3
hg19_v2_chr17_-_29151794_29151803	0.0326042	UCACAUU	ENST00000324238.6|CRLF3|ENSG00000176390.10|cytokine receptor-like factor 3
hg19_v2_chr7_+_117824086_117824202	0.0320888	UCACAUU	ENST00000249299.2|NAA38|ENSG00000128534.3|N(alpha)-acetyltransferase 38, NatC auxiliary subunit 	ENST00000424702.1|NAA38|ENSG00000128534.3|N(alpha)-acetyltransferase 38, NatC auxiliary subunit
hg19_v2_chr12_-_54673871_54673925	0.0318152	UCACAUU	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr12_-_49449107_49449107	0.0317847	UCACAUU	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr16_-_58231782_58231856	0.0316039	UCACAUU	ENST00000565188.1|CSNK2A2|ENSG00000070770.4|casein kinase 2, alpha prime polypeptide 	ENST00000262506.3|CSNK2A2|ENSG00000070770.4|casein kinase 2, alpha prime polypeptide
hg19_v2_chr7_-_14029515_14029642	0.0314514	UCACAUU	ENST00000430479.1|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000405218.2|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000343495.5|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr5_+_56111361_56111403	0.0313723	UCACAUU	ENST00000399503.3|MAP3K1|ENSG00000095015.5|mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase
hg19_v2_chr17_-_74449252_74449294	0.0312277	UCACAUU	ENST00000319380.7|UBE2O|ENSG00000175931.8|ubiquitin-conjugating enzyme E2O
hg19_v2_chr17_-_36956155_36956223	0.0310554	UCACAUU	ENST00000269554.3|PIP4K2B|ENSG00000141720.7|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
hg19_v2_chr10_+_99079008_99079060	0.0309086	UCACAUU	ENST00000371021.3|FRAT1|ENSG00000165879.7|frequently rearranged in advanced T-cell lymphomas
hg19_v2_chr17_-_38020392_38020477	0.0308643	UCACAUU	ENST00000346872.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439167.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377945.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000394189.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377944.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377958.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000535189.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000377952.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr13_-_79233314_79233331	0.0307964	UCACAUU	ENST00000282003.6|RNF219|ENSG00000152193.7|ring finger protein 219
hg19_v2_chr6_-_154677900_154677944	0.0306441	UCACAUU	ENST00000265198.4|IPCEF1|ENSG00000074706.9|interaction protein for cytohesin exchange factors 1 	ENST00000520261.1|IPCEF1|ENSG00000074706.9|interaction protein for cytohesin exchange factors 1
hg19_v2_chr15_+_67358163_67358192	0.0302981	UCACAUU	ENST00000327367.4|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr15_+_41709302_41709348	0.0302848	UCACAUU	ENST00000389629.4|RTF1|ENSG00000137815.10|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr4_-_185395672_185395734	0.030265	UCACAUU	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr1_-_55680762_55680786	0.0301539	UCACAUU	ENST00000407756.1|USP24|ENSG00000162402.8|ubiquitin specific peptidase 24 	ENST00000294383.6|USP24|ENSG00000162402.8|ubiquitin specific peptidase 24
hg19_v2_chrX_+_118108571_118108589	0.0300608	UCACAUU	ENST00000304778.7|LONRF3|ENSG00000175556.12|LON peptidase N-terminal domain and ring finger 3
hg19_v2_chr12_-_118797475_118797527	0.029272	UCACAUU	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr21_+_35445827_35445886	0.0290912	UCACAUU	ENST00000608209.1|SLC5A3|ENSG00000272962.1|sodium/myo-inositol cotransporter  	ENST00000381151.3|SLC5A3|ENSG00000198743.5|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3
hg19_v2_chr1_-_39339777_39339777	0.0289123	UCACAUU	ENST00000397572.2|MYCBP|ENSG00000214114.4|MYC binding protein
hg19_v2_chr14_+_50234309_50234330	0.0288252	UCACAUU	ENST00000298307.5|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr5_-_160973649_160973713	0.0285101	UCACAUU	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chr4_+_128554081_128554121	0.0284909	UCACAUU	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr5_-_176778523_176778684	0.0284539	UCACAUU	ENST00000513877.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2 	ENST00000515209.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2 	ENST00000514458.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2 	ENST00000502560.1|LMAN2|ENSG00000169223.10|lectin, mannose-binding 2
hg19_v2_chr10_+_121652204_121652286	0.0279364	UCACAUU	ENST00000369075.3|SEC23IP|ENSG00000107651.8|SEC23 interacting protein 	ENST00000543134.1|SEC23IP|ENSG00000107651.8|SEC23 interacting protein
hg19_v2_chr20_+_49348081_49348096	0.0275928	UCACAUU	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr12_+_69004619_69004699	0.0274003	UCACAUU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr8_+_37620097_37620146	0.0273597	UCACAUU	ENST00000328195.3|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial) 	ENST00000523358.1|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial) 	ENST00000523187.1|PROSC|ENSG00000147471.7|proline synthetase co-transcribed homolog (bacterial)
hg19_v2_chr8_+_64081118_64081131	0.0272006	UCACAUU	ENST00000539294.1|YTHDF3|ENSG00000185728.12|YTH domain family, member 3
hg19_v2_chr1_-_86174065_86174134	0.0269648	UCACAUU	ENST00000370574.3|ZNHIT6|ENSG00000117174.6|zinc finger, HIT-type containing 6 	ENST00000431532.2|ZNHIT6|ENSG00000117174.6|zinc finger, HIT-type containing 6
hg19_v2_chr7_-_155604967_155605105	0.026763	UCACAUU	ENST00000297261.2|SHH|ENSG00000164690.3|sonic hedgehog
hg19_v2_chr4_+_87856129_87856186	0.0264079	UCACAUU	ENST00000395146.4|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1 	ENST00000507468.1|AFF1|ENSG00000172493.16|AF4/FMR2 family, member 1
hg19_v2_chr11_+_75526212_75526301	0.0263979	UCACAUU	ENST00000356136.3|UVRAG|ENSG00000198382.4|UV radiation resistance associated
hg19_v2_chr6_-_91006461_91006517	0.0260516	UCACAUU	ENST00000257749.4|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000343122.3|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000406998.2|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000453877.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr16_+_2479390_2479409	0.0249267	UCACAUU	ENST00000397066.4|CCNF|ENSG00000162063.8|cyclin F
hg19_v2_chrX_-_54384425_54384495	0.0248655	UCACAUU	ENST00000375169.3|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3 	ENST00000354646.2|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3
hg19_v2_chr9_-_135230336_135230398	0.0248001	UCACAUU	ENST00000224140.5|SETX|ENSG00000107290.9|senataxin 	ENST00000372169.2|SETX|ENSG00000107290.9|senataxin 	ENST00000393220.1|SETX|ENSG00000107290.9|senataxin
hg19_v2_chr9_+_91003271_91003386	0.0247284	UCACAUU	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chr17_+_39845134_39845145	0.0244252	UCACAUU	ENST00000591776.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1 	ENST00000469257.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1
hg19_v2_chr21_-_40685477_40685496	0.0238992	UCACAUU	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr3_+_61547585_61547585	0.0238501	UCACAUU	ENST00000295874.10|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G 	ENST00000474889.1|PTPRG|ENSG00000144724.14|protein tyrosine phosphatase, receptor type, G
hg19_v2_chr9_-_93405352_93405386	0.023803	UCACAUU	ENST00000375765.3|DIRAS2|ENSG00000165023.5|DIRAS family, GTP-binding RAS-like 2
hg19_v2_chr22_-_31885727_31885923	0.0235544	UCACAUU	ENST00000330125.5|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1 	ENST00000344710.5|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1 	ENST00000397518.1|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1
hg19_v2_chr1_+_236849754_236849808	0.0235002	UCACAUU	ENST00000542672.1|ACTN2|ENSG00000077522.8|actinin, alpha 2 	ENST00000366578.4|ACTN2|ENSG00000077522.8|actinin, alpha 2
hg19_v2_chr5_+_52083730_52083821	0.0234681	UCACAUU	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr3_-_72496035_72496069	0.0233259	UCACAUU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr12_-_120806960_120806985	0.0233088	UCACAUU	ENST00000257552.2|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr4_-_24586140_24586188	0.0233021	UCACAUU	ENST00000336812.4|DHX15|ENSG00000109606.8|DEAH (Asp-Glu-Ala-His) box helicase 15
hg19_v2_chr4_-_40631859_40631889	0.0228567	UCACAUU	ENST00000295971.7|RBM47|ENSG00000163694.10|RNA binding motif protein 47 	ENST00000319592.4|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr1_-_68962782_68962801	0.0224559	UCACAUU	ENST00000456315.2|DEPDC1|ENSG00000024526.12|DEP domain containing 1
hg19_v2_chr15_+_63481668_63481812	0.0222999	UCACAUU	ENST00000321437.4|RAB8B|ENSG00000166128.8|RAB8B, member RAS oncogene family 	ENST00000559006.1|RAB8B|ENSG00000166128.8|RAB8B, member RAS oncogene family 	ENST00000448330.2|RAB8B|ENSG00000166128.8|RAB8B, member RAS oncogene family
hg19_v2_chr3_-_15374033_15374136	0.022216	UCACAUU	ENST00000253688.5|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated) 	ENST00000383791.3|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated)
hg19_v2_chr2_+_173940442_173940625	0.0221838	UCACAUU	ENST00000409176.2|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT  	ENST00000338983.3|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT  	ENST00000431503.2|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr3_+_33155444_33155492	0.0220787	UCACAUU	ENST00000320954.6|CRTAP|ENSG00000170275.10|cartilage associated protein
hg19_v2_chr4_-_104640973_104640973	0.0218978	UCACAUU	ENST00000304883.2|TACR3|ENSG00000169836.4|tachykinin receptor 3
hg19_v2_chr4_+_159131346_159131401	0.0218579	UCACAUU	ENST00000508243.1|TMEM144|ENSG00000164124.6|transmembrane protein 144 	ENST00000296529.6|TMEM144|ENSG00000164124.6|transmembrane protein 144
hg19_v2_chr9_+_117373486_117373645	0.0218306	UCACAUU	ENST00000288502.4|C9orf91|ENSG00000157693.10|chromosome 9 open reading frame 91 	ENST00000374049.4|C9orf91|ENSG00000157693.10|chromosome 9 open reading frame 91
hg19_v2_chr3_-_50365607_50365676	0.0213664	UCACAUU	ENST00000232496.4|TUSC2|ENSG00000114383.5|tumor suppressor candidate 2
hg19_v2_chr17_-_66287257_66287276	0.0212708	UCACAUU	ENST00000327268.4|SLC16A6|ENSG00000108932.7|solute carrier family 16, member 6
hg19_v2_chr6_+_143929307_143929322	0.0212464	UCACAUU	ENST00000427704.2|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2 	ENST00000305766.6|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2
hg19_v2_chr10_-_98945677_98945729	0.0211807	UCACAUU	ENST00000266058.4|SLIT1|ENSG00000187122.12|slit homolog 1 (Drosophila) 	ENST00000371041.3|SLIT1|ENSG00000187122.12|slit homolog 1 (Drosophila)
hg19_v2_chr18_+_67956135_67956144	0.0211374	UCACAUU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr14_-_80677970_80678051	0.0210744	UCACAUU	ENST00000438257.4|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr4_+_140222609_140222742	0.0203861	UCACAUU	ENST00000296543.5|NAA15|ENSG00000164134.8|N(alpha)-acetyltransferase 15, NatA auxiliary subunit 	ENST00000398947.1|NAA15|ENSG00000164134.8|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
hg19_v2_chr7_-_127225620_127225679	0.0202011	UCACAUU	ENST00000321407.2|GCC1|ENSG00000179562.2|GRIP and coiled-coil domain containing 1
hg19_v2_chr13_+_58206655_58206655	0.019944	UCACAUU	ENST00000377918.3|PCDH17|ENSG00000118946.7|protocadherin 17
hg19_v2_chr1_-_65432171_65432252	0.0199042	UCACAUU	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr4_+_147560042_147560046	0.0195118	UCACAUU	ENST00000281321.3|POU4F2|ENSG00000151615.3|POU class 4 homeobox 2
hg19_v2_chr17_+_28705921_28706000	0.0193451	UCACAUU	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr12_+_27396901_27397108	0.0191997	UCACAUU	ENST00000541191.1|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like 	ENST00000389032.3|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like
hg19_v2_chr3_+_50712672_50712703	0.0189368	UCACAUU	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr20_+_60718785_60718853	0.0189304	UCACAUU	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr1_+_46972668_46972669	0.0188504	UCACAUU	ENST00000371956.4|DMBX1|ENSG00000197587.6|diencephalon/mesencephalon homeobox 1 	ENST00000360032.3|DMBX1|ENSG00000197587.6|diencephalon/mesencephalon homeobox 1
hg19_v2_chr4_+_17616253_17616275	0.018669	UCACAUU	ENST00000237380.7|MED28|ENSG00000118579.7|mediator complex subunit 28
hg19_v2_chr15_-_55881135_55881192	0.0184773	UCACAUU	ENST00000302000.6|PYGO1|ENSG00000171016.7|pygopus family PHD finger 1
hg19_v2_chrX_-_109561294_109561467	0.0183179	UCACAUU	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr17_+_35766965_35767030	0.0181333	UCACAUU	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr4_+_41937131_41937211	0.0176495	UCACAUU	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr15_-_56209306_56209344	0.0176275	UCACAUU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr15_-_64648273_64648442	0.0175578	UCACAUU	ENST00000607537.1|CSNK1G1|ENSG00000169118.11|casein kinase 1, gamma 1 	ENST00000303052.7|CSNK1G1|ENSG00000169118.11|casein kinase 1, gamma 1 	ENST00000303032.6|CSNK1G1|ENSG00000169118.11|casein kinase 1, gamma 1
hg19_v2_chr5_+_179159813_179159851	0.0174116	UCACAUU	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr1_-_217262969_217262995	0.0173556	UCACAUU	ENST00000361525.3|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr13_-_72441315_72441454	0.017319	UCACAUU	ENST00000305425.4|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila) 	ENST00000313174.7|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila) 	ENST00000354591.4|DACH1|ENSG00000165659.12|dachshund homolog 1 (Drosophila)
hg19_v2_chr4_+_41992489_41992561	0.0170163	UCACAUU	ENST00000264451.7|SLC30A9|ENSG00000014824.9|solute carrier family 30 (zinc transporter), member 9
hg19_v2_chr5_+_139493665_139493718	0.0168714	UCACAUU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr6_+_19837592_19837621	0.0166883	UCACAUU	ENST00000378700.3|ID4|ENSG00000172201.6|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
hg19_v2_chr3_-_98312548_98312567	0.0164173	UCACAUU	ENST00000264193.2|CPOX|ENSG00000080819.2|coproporphyrinogen oxidase
hg19_v2_chr3_-_135914615_135914701	0.0162329	UCACAUU	ENST00000309993.2|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr5_+_135468516_135468621	0.0160793	UCACAUU	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr10_+_81107216_81107237	0.0160218	UCACAUU	ENST00000394579.3|PPIF|ENSG00000108179.9|peptidylprolyl isomerase F 	ENST00000225174.3|PPIF|ENSG00000108179.9|peptidylprolyl isomerase F
hg19_v2_chr6_+_151561085_151561146	0.0157424	UCACAUU	ENST00000402676.2|AKAP12|ENSG00000131016.12|A kinase (PRKA) anchor protein 12
hg19_v2_chr9_-_127952032_127952098	0.0156273	UCACAUU	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr1_+_28099683_28099694	0.0155602	UCACAUU	ENST00000373943.4|STX12|ENSG00000117758.9|syntaxin 12
hg19_v2_chrX_+_12156582_12156603	0.0155542	UCACAUU	ENST00000380682.1|FRMPD4|ENSG00000169933.8|FERM and PDZ domain containing 4
hg19_v2_chr9_+_115249100_115249358	0.0154279	UCACAUU	ENST00000337530.6|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000374244.3|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000536272.1|KIAA1958|ENSG00000165185.10|KIAA1958
hg19_v2_chr1_-_39347255_39347303	0.0154002	UCACAUU	ENST00000454994.2|GJA9|ENSG00000131233.8|gap junction protein, alpha 9, 59kDa 	ENST00000357771.3|GJA9|ENSG00000131233.8|gap junction protein, alpha 9, 59kDa
hg19_v2_chr16_+_15068955_15068991	0.0151547	UCACAUU	ENST00000396410.4|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000569715.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000450288.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr17_-_18585541_18585572	0.0151328	UCACAUU	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr14_+_73525144_73525224	0.0149911	UCACAUU	ENST00000261973.7|RBM25|ENSG00000119707.9|RNA binding motif protein 25 	ENST00000540173.1|RBM25|ENSG00000119707.9|RNA binding motif protein 25
hg19_v2_chr12_+_68042495_68042508	0.0149425	UCACAUU	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr16_+_67596310_67596353	0.0146995	UCACAUU	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr18_+_9913977_9914088	0.0144202	UCACAUU	ENST00000400000.2|VAPA|ENSG00000101558.9|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 	ENST00000340541.4|VAPA|ENSG00000101558.9|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
hg19_v2_chr2_+_45878790_45878913	0.0141531	UCACAUU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chrX_-_20284958_20285039	0.013994	UCACAUU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr6_+_168227611_168227813	0.0139761	UCACAUU	ENST00000344191.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000351017.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000392108.3|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000366806.2|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000392112.1|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000400824.4|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000447894.2|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENST00000400822.3|MLLT4|ENSG00000130396.16|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
hg19_v2_chr17_-_33416231_33416338	0.0137588	UCACAUU	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr22_+_39853258_39853349	0.0137537	UCACAUU	ENST00000341184.6|MGAT3|ENSG00000128268.11|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr17_+_34900737_34900821	0.0136593	UCACAUU	ENST00000304718.4|GGNBP2|ENSG00000005955.8|gametogenetin binding protein 2 	ENST00000485685.2|GGNBP2|ENSG00000005955.8|gametogenetin binding protein 2
hg19_v2_chr2_+_48541776_48541874	0.0135555	UCACAUU	ENST00000413569.1|FOXN2|ENSG00000170802.11|forkhead box N2 	ENST00000340553.3|FOXN2|ENSG00000170802.11|forkhead box N2
hg19_v2_chr10_+_70480963_70481010	0.0134695	UCACAUU	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr1_+_78956651_78956757	0.0132769	UCACAUU	ENST00000370757.3|PTGFR|ENSG00000122420.5|prostaglandin F receptor (FP) 	ENST00000370756.3|PTGFR|ENSG00000122420.5|prostaglandin F receptor (FP)
hg19_v2_chr2_+_135676381_135676435	0.0132598	UCACAUU	ENST00000537343.1|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000295238.6|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000264157.5|CCNT2|ENSG00000082258.8|cyclin T2
hg19_v2_chr3_-_133380731_133380834	0.0127396	UCACAUU	ENST00000260810.5|TOPBP1|ENSG00000163781.8|topoisomerase (DNA) II binding protein 1
hg19_v2_chr2_-_40679186_40679297	0.0127347	UCACAUU	ENST00000406785.2|SLC8A1|ENSG00000183023.14|solute carrier family 8 (sodium/calcium exchanger), member 1
hg19_v2_chr10_+_96162242_96162283	0.0126206	UCACAUU	ENST00000225235.4|TBC1D12|ENSG00000108239.8|TBC1 domain family, member 12
hg19_v2_chr10_-_119806085_119806114	0.0120573	UCACAUU	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr2_+_85766280_85766299	0.0120195	UCACAUU	ENST00000306434.3|MAT2A|ENSG00000168906.8|methionine adenosyltransferase II, alpha
hg19_v2_chr16_-_4897266_4897343	0.01193	UCACAUU	ENST00000591451.1|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000436648.5|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000381983.3|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000588297.1|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis) 	ENST00000321919.9|GLYR1|ENSG00000140632.12|glyoxylate reductase 1 homolog (Arabidopsis)
hg19_v2_chr16_+_2587998_2588011	0.011855	UCACAUU	ENST00000441549.3|PDPK1|ENSG00000140992.14|3-phosphoinositide dependent protein kinase-1 	ENST00000268673.7|PDPK1|ENSG00000140992.14|3-phosphoinositide dependent protein kinase-1
hg19_v2_chr11_+_82868030_82868179	0.0114959	UCACAUU	ENST00000298281.4|PCF11|ENSG00000165494.6|PCF11 cleavage and polyadenylation factor subunit 	ENST00000530660.1|PCF11|ENSG00000165494.6|PCF11 cleavage and polyadenylation factor subunit
hg19_v2_chr14_+_60715928_60716007	0.0113979	UCACAUU	ENST00000395076.4|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A
hg19_v2_chr20_+_31407692_31407709	0.0113177	UCACAUU	ENST00000375571.5|MAPRE1|ENSG00000101367.8|microtubule-associated protein, RP/EB family, member 1
hg19_v2_chr6_+_117002339_117002400	0.0108771	UCACAUU	ENST00000413340.1|KPNA5|ENSG00000196911.5|karyopherin alpha 5 (importin alpha 6) 	ENST00000368564.1|KPNA5|ENSG00000196911.5|karyopherin alpha 5 (importin alpha 6) 	ENST00000356348.1|KPNA5|ENSG00000196911.5|karyopherin alpha 5 (importin alpha 6)
hg19_v2_chr4_+_160188889_160188968	0.010508	UCACAUU	ENST00000264431.4|RAPGEF2|ENSG00000109756.4|Rap guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr20_+_32077880_32077951	0.0105045	UCACAUU	ENST00000342704.6|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000375279.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr19_+_41305406_41305450	0.010369	UCACAUU	ENST00000406058.2|EGLN2|ENSG00000269858.1|egl-9 family hypoxia-inducible factor 2 	ENST00000593726.1|EGLN2|ENSG00000269858.1|egl-9 family hypoxia-inducible factor 2
hg19_v2_chr2_-_25475120_25475180	0.0100517	UCACAUU	ENST00000380746.4|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha 	ENST00000402667.1|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha
hg19_v2_chr3_-_138553594_138553684	0.00987115	UCACAUU	ENST00000477593.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 	ENST00000483968.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
hg19_v2_chr4_-_103748880_103749047	0.00972237	UCACAUU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr3_+_52232102_52232160	0.00972048	UCACAUU	ENST00000469224.1|ALAS1|ENSG00000023330.10|aminolevulinate, delta-, synthase 1 	ENST00000394965.2|ALAS1|ENSG00000023330.10|aminolevulinate, delta-, synthase 1 	ENST00000310271.2|ALAS1|ENSG00000023330.10|aminolevulinate, delta-, synthase 1 	ENST00000484952.1|ALAS1|ENSG00000023330.10|aminolevulinate, delta-, synthase 1
hg19_v2_chr11_+_124609823_124609941	0.00962505	UCACAUU	ENST00000412681.2|NRGN|ENSG00000154146.8|neurogranin (protein kinase C substrate, RC3)
hg19_v2_chr12_+_862089_862343	0.00942289	UCACAUU	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chr15_+_74833518_74833567	0.00914653	UCACAUU	ENST00000346246.5|ARID3B|ENSG00000179361.13|AT rich interactive domain 3B (BRIGHT-like)
hg19_v2_chr4_-_76598296_76598318	0.00911066	UCACAUU	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr1_+_244214577_244214593	0.00908195	UCACAUU	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr4_-_74124502_74124523	0.00870513	UCACAUU	ENST00000358602.4|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000330838.6|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17 	ENST00000561029.1|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr15_-_27018175_27018241	0.00857626	UCACAUU	ENST00000311550.5|GABRB3|ENSG00000166206.9|gamma-aminobutyric acid (GABA) A receptor, beta 3
hg19_v2_chr19_-_33793430_33793470	0.00855418	UCACAUU	ENST00000498907.2|CEBPA|ENSG00000245848.2|CCAAT/enhancer binding protein (C/EBP), alpha
hg19_v2_chrX_+_122993827_122993910	0.00853022	UCACAUU	ENST00000371199.3|XIAP|ENSG00000101966.8|X-linked inhibitor of apoptosis
hg19_v2_chr12_-_96794143_96794264	0.00798414	UCACAUU	ENST00000543119.2|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr16_-_17564738_17564834	0.00757223	UCACAUU	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr14_-_59932044_59932114	0.00733053	UCACAUU	ENST00000395116.1|GPR135|ENSG00000181619.11|G protein-coupled receptor 135
hg19_v2_chr3_+_140660634_140660729	0.00717584	UCACAUU	ENST00000446041.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000507429.1|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000324194.6|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr5_+_140207536_140207650	0.0071665	UCACAUU	ENST00000529310.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6 	ENST00000527624.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6
hg19_v2_chr8_+_1449532_1449532	0.00692531	UCACAUU	ENST00000421627.2|DLGAP2|ENSG00000198010.7|discs, large (Drosophila) homolog-associated protein 2
hg19_v2_chr10_+_93683519_93683594	0.0069047	UCACAUU	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr3_-_18466787_18466861	0.00683447	UCACAUU	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr10_+_85899196_85899273	0.00666189	UCACAUU	ENST00000372134.3|GHITM|ENSG00000165678.15|growth hormone inducible transmembrane protein
hg19_v2_chr3_-_47205457_47205492	0.00662261	UCACAUU	ENST00000409792.3|SETD2|ENSG00000181555.15|SET domain containing 2
hg19_v2_chr1_+_218458625_218458660	0.00640941	UCACAUU	ENST00000366932.3|RRP15|ENSG00000067533.5|ribosomal RNA processing 15 homolog (S. cerevisiae)
hg19_v2_chr10_-_94003003_94003013	0.00632658	UCACAUU	ENST00000412050.4|CPEB3|ENSG00000107864.10|cytoplasmic polyadenylation element binding protein 3
hg19_v2_chrX_-_6146876_6146924	0.00616376	UCACAUU	ENST00000381095.3|NLGN4X|ENSG00000146938.10|neuroligin 4, X-linked
hg19_v2_chr10_-_11653753_11653806	0.00585197	UCACAUU	ENST00000609104.1|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr7_-_26240357_26240377	0.00580202	UCACAUU	ENST00000354667.4|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1 	ENST00000356674.7|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v2_chr5_-_141392538_141392606	0.00579527	UCACAUU	ENST00000503794.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000510194.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000504424.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000513454.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000458112.2|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000542860.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000503229.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000500692.2|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000311337.6|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000504139.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000505689.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1
hg19_v2_chr10_+_102295616_102295713	0.00562326	UCACAUU	ENST00000299163.6|HIF1AN|ENSG00000166135.9|hypoxia inducible factor 1, alpha subunit inhibitor
hg19_v2_chr14_+_55518349_55518423	0.00550517	UCACAUU	ENST00000395468.4|MAPK1IP1L|ENSG00000168175.10|mitogen-activated protein kinase 1 interacting protein 1-like
hg19_v2_chr16_-_56485257_56485287	0.00535492	UCACAUU	ENST00000300291.5|NUDT21|ENSG00000167005.9|nudix (nucleoside diphosphate linked moiety X)-type motif 21
hg19_v2_chr1_+_24069642_24069646	0.00509373	UCACAUU	ENST00000418390.2|TCEB3|ENSG00000011007.8|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)
hg19_v2_chr2_-_160919112_160919162	0.00500938	UCACAUU	ENST00000283243.7|PLA2R1|ENSG00000153246.7|phospholipase A2 receptor 1, 180kDa 	ENST00000392771.1|PLA2R1|ENSG00000153246.7|phospholipase A2 receptor 1, 180kDa
hg19_v2_chr13_-_103053946_103054124	0.00498778	UCACAUU	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr5_-_78281603_78281617	0.00488782	UCACAUU	ENST00000264914.4|ARSB|ENSG00000113273.11|arylsulfatase B
hg19_v2_chr12_+_13197218_13197293	0.00481842	UCACAUU	ENST00000197268.8|KIAA1467|ENSG00000084444.9|KIAA1467
hg19_v2_chr20_+_62371206_62371224	0.00475881	UCACAUU	ENST00000266077.2|SLC2A4RG|ENSG00000125520.9|SLC2A4 regulator
hg19_v2_chr5_+_140201183_140201361	0.00447798	UCACAUU	ENST00000529619.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000529859.1|PCDHA5|ENSG00000204965.4|protocadherin alpha 5 	ENST00000378126.3|PCDHA5|ENSG00000204965.4|protocadherin alpha 5
hg19_v2_chr7_-_97881429_97881563	0.00385211	UCACAUU	ENST00000420697.1|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000379795.3|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000415086.1|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000542604.1|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1 	ENST00000447648.2|TECPR1|ENSG00000205356.5|tectonin beta-propeller repeat containing 1
hg19_v2_chr8_-_72268889_72268955	0.00375993	UCACAUU	ENST00000388742.4|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr19_+_13135386_13135435	0.00375406	UCACAUU	ENST00000360105.4|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor) 	ENST00000588228.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor) 	ENST00000591028.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor)
hg19_v2_chr3_-_52713729_52713784	0.00366442	UCACAUU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr3_+_5163905_5164039	0.00344902	UCACAUU	ENST00000256496.3|ARL8B|ENSG00000134108.8|ADP-ribosylation factor-like 8B 	ENST00000419534.2|ARL8B|ENSG00000134108.8|ADP-ribosylation factor-like 8B
hg19_v2_chr13_-_46626847_46626899	0.0034237	UCACAUU	ENST00000242848.4|ZC3H13|ENSG00000123200.12|zinc finger CCCH-type containing 13 	ENST00000282007.3|ZC3H13|ENSG00000123200.12|zinc finger CCCH-type containing 13
hg19_v2_chr2_-_100721178_100721307	0.0032779	UCACAUU	ENST00000409236.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr8_-_82024290_82024310	0.00322899	UCACAUU	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr9_-_73736511_73736546	0.00276613	UCACAUU	ENST00000377110.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377111.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr3_+_101292939_101293063	0.00254531	UCACAUU	ENST00000265260.3|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000469941.1|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000296024.5|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein
hg19_v2_chr1_-_150849208_150849244	0.00249086	UCACAUU	ENST00000358595.5|ARNT|ENSG00000143437.16|aryl hydrocarbon receptor nuclear translocator
hg19_v2_chr1_+_167190066_167190156	0.00229394	UCACAUU	ENST00000367866.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000429375.2|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000452019.1|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000420254.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1 	ENST00000541643.3|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr14_-_92572894_92572965	0.00216615	UCACAUU	ENST00000532032.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000506466.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000555381.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000557311.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000554592.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000554672.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000553491.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000556220.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000502250.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000503767.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000393287.5|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000340660.6|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000545170.1|ATXN3|ENSG00000066427.17|ataxin 3 	ENST00000429774.2|ATXN3|ENSG00000066427.17|ataxin 3
hg19_v2_chr7_+_99613195_99613206	0.00206237	UCACAUU	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr1_-_31196427_31196434	0.0017936	UCACAUU	ENST00000373765.4|MATN1|ENSG00000162510.5|matrilin 1, cartilage matrix protein
hg19_v2_chr14_-_38064198_38064239	0.00175343	UCACAUU	ENST00000250448.2|FOXA1|ENSG00000129514.4|forkhead box A1
hg19_v2_chr6_+_153019023_153019043	0.0014933	UCACAUU	ENST00000367245.5|MYCT1|ENSG00000120279.6|myc target 1 	ENST00000529453.1|MYCT1|ENSG00000120279.6|myc target 1
hg19_v2_chr4_+_124320665_124320702	0.00120141	UCACAUU	ENST00000394339.2|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr18_+_905104_905118	0.00106919	UCACAUU	ENST00000579794.1|ADCYAP1|ENSG00000141433.8|adenylate cyclase activating polypeptide 1 (pituitary)
hg19_v2_chr12_+_62860581_62860629	0.00105214	UCACAUU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr2_-_96781984_96781984	0.000984678	UCACAUU	ENST00000409345.3|ADRA2B|ENSG00000222040.3|adrenoceptor alpha 2B
hg19_v2_chr16_+_53468332_53468414	0.000563492	UCACAUU	ENST00000262133.6|RBL2|ENSG00000103479.10|retinoblastoma-like 2 (p130)
hg19_v2_chr3_+_196466710_196466824	0.000512577	UCACAUU	ENST00000327134.3|PAK2|ENSG00000180370.6|p21 protein (Cdc42/Rac)-activated kinase 2
hg19_v2_chr2_+_163200598_163200667	0.000313059	UCACAUU	ENST00000437150.2|GCA|ENSG00000115271.6|grancalcin, EF-hand calcium binding protein 	ENST00000453113.2|GCA|ENSG00000115271.6|grancalcin, EF-hand calcium binding protein
hg19_v2_chr8_+_26240414_26240631	0.00018921	UCACAUU	ENST00000380629.2|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr15_-_67546963_67547074	0.000124263	UCACAUU	ENST00000561452.1|AAGAB|ENSG00000103591.8|alpha- and gamma-adaptin binding protein 	ENST00000261880.5|AAGAB|ENSG00000103591.8|alpha- and gamma-adaptin binding protein
hg19_v2_chr16_+_81069433_81069462	7.47584e-05	UCACAUU	ENST00000299575.4|ATMIN|ENSG00000166454.5|ATM interactor
