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ENCODE cell lines, expression (Ernst 2011)

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Results for AAUCUCA

Z-value: 0.42

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miRNA associated with seed AAUCUCA

NamemiRBASE accession
hsa-miR-216a-5p
MIMAT0000273

Activity profile of AAUCUCA motif

Sorted Z-values of AAUCUCA motif

Network of associatons between targets according to the STRING database.

First level regulatory network of AAUCUCA

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr17_+_53342311 1.08 ENST00000226067.5
 HLF
 hepatic leukemia factor
chr7_-_139876812 0.63 ENST00000397560.2
 JHDM1D
 lysine (K)-specific demethylase 7A
chrX_+_23352133 0.63 ENST00000379361.4
 PTCHD1
 patched domain containing 1
chr6_+_42749759 0.48 ENST00000314073.5
 GLTSCR1L
 GLTSCR1-like
chrX_-_20284958 0.47 ENST00000379565.3
 RPS6KA3
 ribosomal protein S6 kinase, 90kDa, polypeptide 3
chr17_-_73975444 0.38 ENST00000293217.5
ENST00000537812.1
 ACOX1
 acyl-CoA oxidase 1, palmitoyl
chr1_-_67519782 0.32 ENST00000235345.5
 SLC35D1
 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1
chr2_-_242212227 0.31 ENST00000427007.1
ENST00000458564.1
ENST00000452065.1
ENST00000427183.2
ENST00000426343.1
ENST00000422080.1
ENST00000449504.1
ENST00000449864.1
ENST00000391975.1
 HDLBP
 high density lipoprotein binding protein
chr11_-_32452357 0.30 ENST00000379079.2
ENST00000530998.1
 WT1
 Wilms tumor 1
chr4_-_105416039 0.30 ENST00000394767.2
 CXXC4
 CXXC finger protein 4
chr11_+_111945011 0.24 ENST00000532163.1
ENST00000280352.9
ENST00000530104.1
ENST00000526879.1
ENST00000393047.3
ENST00000525785.1
 C11orf57
 chromosome 11 open reading frame 57
chr18_+_59992527 0.23 ENST00000586569.1
 TNFRSF11A
 tumor necrosis factor receptor superfamily, member 11a, NFKB activator
chr17_+_64298944 0.22 ENST00000413366.3
 PRKCA
 protein kinase C, alpha
chr20_-_524455 0.19 ENST00000349736.5
ENST00000217244.3
 CSNK2A1
 casein kinase 2, alpha 1 polypeptide
chr12_-_57030115 0.18 ENST00000379441.3
ENST00000179765.5
ENST00000551812.1
 BAZ2A
 bromodomain adjacent to zinc finger domain, 2A
chr15_+_40733387 0.16 ENST00000416165.1
 BAHD1
 bromo adjacent homology domain containing 1
chr1_-_67896095 0.14 ENST00000370994.4
 SERBP1
 SERPINE1 mRNA binding protein 1
chr9_-_20622478 0.14 ENST00000355930.6
ENST00000380338.4
 MLLT3
 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
chr1_+_63788730 0.12 ENST00000371116.2
 FOXD3
 forkhead box D3
chrX_+_122993827 0.12 ENST00000371199.3
 XIAP
 X-linked inhibitor of apoptosis
chr4_+_3076388 0.12 ENST00000355072.5
 HTT
 huntingtin
chr4_+_99916765 0.10 ENST00000296411.6
 METAP1
 methionyl aminopeptidase 1
chr5_+_149109825 0.09 ENST00000360453.4
ENST00000394320.3
ENST00000309241.5
 PPARGC1B
 peroxisome proliferator-activated receptor gamma, coactivator 1 beta
chr2_-_172967621 0.09 ENST00000234198.4
ENST00000466293.2
 DLX2
 distal-less homeobox 2
chr12_+_50344516 0.08 ENST00000199280.3
ENST00000550862.1
 AQP2
 aquaporin 2 (collecting duct)
chr4_-_113437328 0.08 ENST00000313341.3
 NEUROG2
 neurogenin 2
chr5_-_178054105 0.06 ENST00000316308.4
 CLK4
 CDC-like kinase 4
chr17_+_14204389 0.05 ENST00000360954.2
 HS3ST3B1
 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
chr13_-_45915221 0.05 ENST00000309246.5
ENST00000379060.4
ENST00000379055.1
ENST00000527226.1
ENST00000379056.1
 TPT1
 tumor protein, translationally-controlled 1
chr13_-_31038370 0.01 ENST00000399489.1
ENST00000339872.4
 HMGB1
 high mobility group box 1

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0071810 circadian temperature homeostasis(GO:0060086) regulation of fever generation by regulation of prostaglandin secretion(GO:0071810) positive regulation of fever generation by positive regulation of prostaglandin secretion(GO:0071812) positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling(GO:0071848) regulation of fever generation by prostaglandin secretion(GO:0100009)
0.1 0.3 GO:0072302 posterior mesonephric tubule development(GO:0072166) negative regulation of metanephric glomerulus development(GO:0072299) negative regulation of metanephric glomerular mesangial cell proliferation(GO:0072302)
0.1 0.2 GO:0061110 histone H3-T6 phosphorylation(GO:0035408) dense core granule biogenesis(GO:0061110) regulation of dense core granule biogenesis(GO:2000705)
0.1 0.3 GO:0006065 UDP-glucuronate biosynthetic process(GO:0006065)
0.0 0.3 GO:0007352 zygotic specification of dorsal/ventral axis(GO:0007352)
0.0 0.1 GO:1902528 regulation of protein linear polyubiquitination(GO:1902528) positive regulation of protein linear polyubiquitination(GO:1902530)
0.0 0.1 GO:0031587 positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity(GO:0031587)
0.0 0.6 GO:0021794 thalamus development(GO:0021794)
0.0 0.1 GO:1902866 regulation of neural retina development(GO:0061074) regulation of retina development in camera-type eye(GO:1902866)
0.0 0.4 GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase(GO:0033539)
0.0 0.1 GO:0071288 cellular response to mercury ion(GO:0071288)
0.0 0.3 GO:0034384 high-density lipoprotein particle clearance(GO:0034384)
0.0 0.5 GO:0043555 regulation of translation in response to stress(GO:0043555)
0.0 1.1 GO:0035914 skeletal muscle cell differentiation(GO:0035914)
0.0 0.1 GO:0010694 positive regulation of alkaline phosphatase activity(GO:0010694)
0.0 0.1 GO:0018206 peptidyl-methionine modification(GO:0018206)
0.0 0.1 GO:0007379 segment specification(GO:0007379) positive regulation of Wnt signaling pathway, planar cell polarity pathway(GO:2000096)
0.0 0.2 GO:0031507 heterochromatin assembly(GO:0031507)
0.0 0.2 GO:0000183 chromatin silencing at rDNA(GO:0000183)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0033553 rDNA heterochromatin(GO:0033553)
0.0 0.2 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.2 GO:0005956 protein kinase CK2 complex(GO:0005956)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0035403 histone kinase activity (H3-T6 specific)(GO:0035403)
0.1 0.3 GO:0044729 hemi-methylated DNA-binding(GO:0044729)
0.0 0.4 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.0 0.3 GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165)
0.0 0.6 GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027)
0.0 0.1 GO:0050682 AF-2 domain binding(GO:0050682)
0.0 0.1 GO:0015168 glycerol transmembrane transporter activity(GO:0015168)

Gene overrepresentation in C2:CP category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID TCR RAS PATHWAY Ras signaling in the CD4+ TCR pathway
0.0 0.5 SA B CELL RECEPTOR COMPLEXES Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases.

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.0 0.4 REACTOME ALPHA LINOLENIC ACID ALA METABOLISM Genes involved in alpha-linolenic acid (ALA) metabolism
0.0 0.3 REACTOME GLUCURONIDATION Genes involved in Glucuronidation
0.0 0.5 REACTOME ERK MAPK TARGETS Genes involved in ERK/MAPK targets